NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F102734

Metagenome Family F102734

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F102734
Family Type Metagenome
Number of Sequences 101
Average Sequence Length 41 residues
Representative Sequence MNQMTRRAFGAAGFALLLATSASFAQQPPPVRVRGTIEAVD
Number of Associated Samples 88
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 96.04 %
% of genes near scaffold ends (potentially truncated) 100.00 %
% of genes from short scaffolds (< 2000 bps) 92.08 %
Associated GOLD sequencing projects 86
AlphaFold2 3D model prediction Yes
3D model pTM-score0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (56.436 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(12.871 % of family members)
Environment Ontology (ENVO) Unclassified
(25.743 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(51.485 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.
1INPgaii200_09014621
2ICChiseqgaiiDRAFT_04940431
3INPhiseqgaiiFebDRAFT_1003558441
4INPhiseqgaiiFebDRAFT_1019223341
5AF_2010_repII_A1DRAFT_101454702
6AF_2010_repII_A100DRAFT_10081441
7AF_2010_repII_A001DRAFT_101272361
8AP72_2010_repI_A100DRAFT_10636931
9AP72_2010_repI_A001DRAFT_10265591
10AP72_2010_repI_A001DRAFT_10294922
11AP72_2010_repI_A001DRAFT_10365922
12JGI10216J12902_1194420661
13Ga0055488_100604872
14Ga0066398_100669642
15Ga0066388_1039264532
16Ga0070673_1015119562
17Ga0070662_1015347102
18Ga0066694_101948532
19Ga0068859_1024709061
20Ga0066905_1001608321
21Ga0066905_1011392771
22Ga0066903_1017305901
23Ga0066903_1076923841
24Ga0066903_1083918043
25Ga0068860_1000575555
26Ga0070766_110823051
27Ga0066652_1000123106
28Ga0075425_1007739881
29Ga0075424_1000898496
30Ga0079219_106504211
31Ga0075418_119614481
32Ga0075423_100914124
33Ga0075423_106013822
34Ga0105242_122576832
35Ga0126374_114243521
36Ga0126380_104957822
37Ga0126384_122103022
38Ga0134063_100305471
39Ga0134071_102190923
40Ga0126378_100504251
41Ga0126378_112406341
42Ga0126378_120317152
43Ga0126378_123688261
44Ga0126377_118333102
45Ga0134124_109917943
46Ga0134127_123933341
47Ga0138505_1000253472
48Ga0137383_104963381
49Ga0137376_101658421
50Ga0137378_109641351
51Ga0137377_109542931
52Ga0137377_110896721
53Ga0137384_106962681
54Ga0150984_1158778762
55Ga0164303_108375221
56Ga0164307_100823301
57Ga0075350_11192152
58Ga0157379_116890422
59Ga0157376_107810784
60Ga0157376_111173372
61Ga0173478_107515682
62Ga0182035_117308071
63Ga0184616_101012041
64Ga0184609_102259451
65Ga0184625_102112771
66Ga0190268_103230001
67Ga0190270_110206432
68Ga0190274_110557453
69Ga0179596_104589541
70Ga0210383_115446992
71Ga0193694_10317012
72Ga0207653_101874522
73Ga0207671_115743001
74Ga0207668_103821961
75Ga0209438_11828102
76Ga0209378_12973822
77Ga0209161_101033831
78Ga0209577_100640674
79Ga0209382_107297872
80Ga0307503_101671251
81Ga0247824_102183681
82Ga0307302_103438261
83Ga0307278_101866292
84Ga0307278_102483551
85Ga0307277_100465993
86Ga0307495_100331921
87Ga0318574_100865491
88Ga0318509_103344991
89Ga0318526_104836401
90Ga0318552_102730452
91Ga0318523_101540001
92Ga0318565_101908032
93Ga0318520_110190282
94Ga0306921_120529341
95Ga0310906_106004171
96Ga0318558_103674912
97Ga0268251_103371101
98Ga0307471_1037428582
99Ga0307472_1016669202
100Ga0306920_1035009692
101Ga0310914_104403063
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 33.33%    β-sheet: 0.00%    Coil/Unstructured: 66.67%
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510152025303540MNQMTRRAFGAAGFALLLATSASFAQQPPPVRVRGTIEAVDSequenceα-helicesβ-strandsCoilSS Conf. scoreSignal Peptide
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.46
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
43.6%56.4%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Natural And Restored Wetlands
Groundwater Sediment
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Grasslands Soil
Agricultural Soil
Soil
Grasslands Soil
Soil
Forest Soil
Soil
Hardwood Forest Soil
Soil
Natural And Restored Wetlands
Tropical Forest Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Soil
Switchgrass Rhizosphere
Populus Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Switchgrass Rhizosphere
Corn Rhizosphere
Avena Fatua Rhizosphere
Agave
3.0%12.9%6.9%7.9%9.9%9.9%6.9%3.0%6.9%5.9%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
INPgaii200_090146212228664022SoilMDQMTRRAFGAAGFALLLATSTTLAQQQSPTVRVRGTIEGVDGPM
ICChiseqgaiiDRAFT_049404313300000033SoilMHPMTRRXLCALGLAXLXATSASXAQXPAAVRVRGTI
INPhiseqgaiiFebDRAFT_10035584413300000364SoilMHGITRRMFCAVAXXLLAATSVSLAQQPETVRVRGTVE
INPhiseqgaiiFebDRAFT_10192233413300000364SoilMNQMTRRVFAVAGFTLLLATSASFAQQPPPVRVRGTVE
AF_2010_repII_A1DRAFT_1014547023300000597Forest SoilMNQITRRAFGAAGFALLLVTSASFAQQPPPVRVRGTVEA
AF_2010_repII_A100DRAFT_100814413300000655Forest SoilMKQMTRRIFGMAGFALLLATSASFAQQPPQTVRIRGQIEKVEGDV
AF_2010_repII_A001DRAFT_1012723613300000793Forest SoilMNQMTRRVFAVAGFTLLLATSASFAQQPPPVRVRGTVEG
AP72_2010_repI_A100DRAFT_106369313300000837Forest SoilMKAVIRGVFAVAGVALLLGTAASFAQQPALVRVRGTVEAVD
AP72_2010_repI_A001DRAFT_102655913300000893Forest SoilMNHITRRAFGAAGFALLLVTSASFAQQPPPVRVRGTVE
AP72_2010_repI_A001DRAFT_102949223300000893Forest SoilMNQITRRAFGAAGFALLLVTSASFAQQPPPVRVRGTVE
AP72_2010_repI_A001DRAFT_103659223300000893Forest SoilMKQMTRRVFGVAGFALLLATSASFAQQPPPVRIRGQIEK
JGI10216J12902_11944206613300000956SoilMDQMTRRAFGAAGFAVLLATSTTFAEQQSSTVRMRGTVEGADGPMLTV
Ga0055488_1006048723300004070Natural And Restored WetlandsMNKLTRRALGVAGFALILATSASFAQQPPVRIRGDIVKADGDVFEIKTRGGET
Ga0066398_1006696423300004268Tropical Forest SoilMNQITRRAFGVGGFALLLATSESFAQQSPPVRVRGTIEAFDNGVLT
Ga0066388_10392645323300005332Tropical Forest SoilMNQTTRRAFGAAGFALLLATSVSFAQQPPPVRVRGTVEAVDGP
Ga0070673_10151195623300005364Switchgrass RhizosphereMNQTTRRVFGVAGFALLLATSASFAQQPAPVRVRGTVEAVDGPMLTV
Ga0070662_10153471023300005457Corn RhizosphereMNQTTRRIFGVAGFALLLATSASFAQQPAPVRVRGTVEAVDG
Ga0066694_1019485323300005574SoilMNQMTRRFFGVAGFALLLATSASFAQQQPPTVRIRGQIEKV
Ga0068859_10247090613300005617Switchgrass RhizosphereMHGMTRRVLCALGLALLSATSASLAQQPAAVRVRGTIEAV
Ga0066905_10016083213300005713Tropical Forest SoilMDKMTRRAVDAAGFALLLATSATFAQQQSPTVRVRG
Ga0066905_10113927713300005713Tropical Forest SoilMNHITRRAFGAAGFALLLVTSASFAQQPPPVRVRGTVEAVDGP
Ga0066903_10173059013300005764Tropical Forest SoilMDGITRRAFGAAGFALLLATTTTLAQQQSPTVRVR
Ga0066903_10769238413300005764Tropical Forest SoilVKHVRQRAFCLVTLALASSASFAQEHATVRVRGTIEAVD
Ga0066903_10839180433300005764Tropical Forest SoilMKQMTRRVFGVAGFALLLATSASFAQQPPPVRIRG
Ga0068860_10005755553300005843Switchgrass RhizosphereMNQTTRRIFGVAGFALLLATSASFAQQPAPVRVRGTVEAVDGPMLTV
Ga0070766_1108230513300005921SoilMNKMTRRMFGASSLAVLLASRAGFAQQSPPVRVRGT
Ga0066652_10001231063300006046SoilMKQMTRRVFGVAGFALLLATSASFAQQPPPVRIRGQIEKIEGDVLDIKT
Ga0075425_10077398813300006854Populus RhizosphereMNQMTRRVFGVAGFALLLATSASFAQQPPPTVRIRGQI
Ga0075424_10008984963300006904Populus RhizosphereMHPMTRRLLCALGLALLSATPASLAQQPAAVRVRGTIEAVDGAM
Ga0079219_1065042113300006954Agricultural SoilMNQMTRRVFGVAGFALLLATSASFAQQPPPTVRIRGQIEKVDG
Ga0075418_1196144813300009100Populus RhizosphereMKQMTRRVFAVAGFTLLLATSASFAQQPPPVRVRGTVEG
Ga0075423_1009141243300009162Populus RhizosphereMNQMTRRVFGVAGFALLLATSASFAQQPPPTVRIRGQIE
Ga0075423_1060138223300009162Populus RhizosphereMKQMTRRVFGVAGFALLLATSASFAQQPPPTVRIRGQIEK
Ga0105242_1225768323300009176Miscanthus RhizosphereMNQTTRRVFGVAGFALLLATSASFAQQPAPVRVRGTVEAVDGP
Ga0126374_1142435213300009792Tropical Forest SoilMGFREDDMNQITRRAFGAAGFALLLVTSASFAQQPPPVRVRGTVEAVD
Ga0126380_1049578223300010043Tropical Forest SoilMGFREDDMKAVIRGVFAVAGVALLLGTAASFAQQPALVRVRGTVEAV
Ga0126384_1221030223300010046Tropical Forest SoilMVMYGLTNRVTRRAFAVAGFALLVATSASFAQQPQMVRVRGTV
Ga0134063_1003054713300010335Grasslands SoilMNQMTRRAFGAAGFALLLATSASFAQQPPPVRVRG
Ga0134071_1021909233300010336Grasslands SoilMNQMTRRFFGVAGFALLLATSASFAQQQPPTVRIRGQ
Ga0126378_1005042513300010361Tropical Forest SoilMNQMTRRIFAMAGFALLLATSASFAQQPPQTVRIRGQIEKVEGDVLDIK
Ga0126378_1124063413300010361Tropical Forest SoilMKQMTRRVFGVAGFALLLATSASFAQQPPPVRIRGQIEKIEGDVLDIK
Ga0126378_1203171523300010361Tropical Forest SoilMKQMTRRVFGVAGFALLLATSASFAQQPPPVRIRGQIEKIEG
Ga0126378_1236882613300010361Tropical Forest SoilMDKMTRRAFGAAGLVLLLSTSAPLAQQQAPSVRVRGTIERIDGSTY
Ga0126377_1183331023300010362Tropical Forest SoilMPCLLAPALLLAAGASLAQEPAPVRVRGTIEAVDGAMLTVRSR
Ga0134124_1099179433300010397Terrestrial SoilMTRRLLCALGLALLSATPASLAQQPAAVRVRGTIEAVDGAMLTVRS
Ga0134127_1239333413300010399Terrestrial SoilMKQMTRRVFGVAGFALLLATSASFAQQPPPTVRIRGQIEKVD
Ga0138505_10002534723300010999SoilMDQMTRRAFGAAGFAVLLATSTTFAEQQSSTVRMRGTVEGADGPMLTVTS
Ga0137383_1049633813300012199Vadose Zone SoilMNQMTRRAFGVAGFTVLLVTSASFAQQQPPPVRVRG
Ga0137376_1016584213300012208Vadose Zone SoilMDEMTRRAFGAAGFALLLATSATFAQQQSPTVRVRGTVEG
Ga0137378_1096413513300012210Vadose Zone SoilMNQMTRRVFGVAGFALLLATSASFAQQQPQTVRIRGQIEKVEGD
Ga0137377_1095429313300012211Vadose Zone SoilMDQMTRRVFGAAGFALLLATSTTFAQQQSPTVRVRGTVE
Ga0137377_1108967213300012211Vadose Zone SoilMNQMTRRAFGVAGFTVLLVTSASFAQQQPPPVRVR
Ga0137384_1069626813300012357Vadose Zone SoilMNQMTRRFFGVAGFALLLATSASFAQQQPPTVRIRGQIEK
Ga0150984_11587787623300012469Avena Fatua RhizosphereMHSMTRRMLYAAGLFLLGATSVSFAQQTELVRVRGTI
Ga0164303_1083752213300012957SoilMNQMIRRASSAAAFALLFVASISFAQQPPQVRVRGTVEAVDGS
Ga0164307_1008233013300012987SoilMTRRVFCALGLALLSATSASFAQQPAAVRVRGTIEAVDG
Ga0075350_111921523300014315Natural And Restored WetlandsMNKLTRRALGVAGFALILATSASFAQQPPVRIRGDIVKADGDVFEIKTRGGETVKV
Ga0157379_1168904223300014968Switchgrass RhizosphereMKQTTRRIFGVAGFALLLATSASFAQQPAPVRVRGTVEAVD
Ga0157376_1078107843300014969Miscanthus RhizosphereMHLMTRRMLCALGLALLPVTSVSLAQQSAPVRVRGTIEAV
Ga0157376_1111733723300014969Miscanthus RhizosphereMNQTTRRVFGVAGFALLLATSASFAQQPAPVRVRGTVEAVD
Ga0173478_1075156823300015201SoilMNQTTRRVFGVAGFALLLATSASFAQQPAPVRVRGTVEAVDGPML
Ga0182035_1173080713300016341SoilMNQITRRALGAAGFALLLATSVSFAQQPPPVRVRGTVE
Ga0184616_1010120413300018055Groundwater SedimentMNQTTRRIFGVAGFALLLATSASFAQQPAPVRVRGTVEA
Ga0184609_1022594513300018076Groundwater SedimentMNQTTRRVFGVAGFALLLATSASFAQQPAPVRVRGTVEAVDG
Ga0184625_1021127713300018081Groundwater SedimentMQGITRRMFCAVALSLLAATSVSLAQQPETVRVRGTIEAVDGAMLT
Ga0190268_1032300013300018466SoilMNQTTRRIFGVAGFALLLATSASFAQQPAPVRVRGTVEAV
Ga0190270_1102064323300018469SoilMNQTTRRVFGVAGFALLLATSASFAQQPAPVRVRGTVEAV
Ga0190274_1105574533300018476SoilMHPMTRRMFCAIGFALLPVTSVSFAQQPAPVRVRGTI
Ga0179596_1045895413300021086Vadose Zone SoilMNKMTRRMFGASSFALLLAGSASYAQQSPPVRVRGTVEGVD
Ga0210383_1154469923300021407SoilMNKLTRRMFGASSLAVLLASPFASSAGLAQQSPAVRVRG
Ga0193694_103170123300021415SoilMNQTTRRIFGVAGFALLLAASASFAQQPAPVRVRGTVEAV
Ga0207653_1018745223300025885Corn, Switchgrass And Miscanthus RhizosphereMNQTTRRIFGVAGFALLLATSASFAQQPAPVRVRGTVEAVDGPMLT
Ga0207671_1157430013300025914Corn RhizosphereMHPMTRRVLCALGLALLSATSASLAQQPAAVRVRGTIEAVD
Ga0207668_1038219613300025972Switchgrass RhizosphereMHLMTRRMLCAVGFALLPVTSVSFAQQPAPVRVRGTIEAVDGAMLTV
Ga0209438_118281023300026285Grasslands SoilMNQTTRRVFGVAGFALLLATSASFAQQPAPVRVRGTVEAVDGPLL
Ga0209378_129738223300026528SoilMNQMTRRAFGAAGFALLLATSASFAQQPPPVRVRGTIEAVD
Ga0209161_1010338313300026548SoilMNQMTRRFFGVAGFALLLATSASFAQQQPPTVRIRGQIEKVE
Ga0209577_1006406743300026552SoilMKQMTRRVFGVAGFALLLATSASFAQQPPPVRIRGQIE
Ga0209382_1072978723300027909Populus RhizosphereMNQTTRRVVGAAGLALLLLTSASFAQQPAPVRVRGTV
Ga0307503_1016712513300028802SoilMNQTTRRIFGVAGFALLLATSASFAQQPAPVRVRG
Ga0247824_1021836813300028809SoilMNQTTRRIFGVAGFALLLATSASFAQQPAPVRVRGTVEAVDGQM
Ga0307302_1034382613300028814SoilMHGITRRMFCAVVLSLLAVTSVSFAQQPETVRVRGTIEAV
Ga0307278_1018662923300028878SoilMNQMTRRAFGVAGFAVLFVTSASFAQQQPPPVRVR
Ga0307278_1024835513300028878SoilMDQMTRRAFGAAGFALLLATSATFAQQQSPTVRVRGT
Ga0307277_1004659933300028881SoilMNQMTRRAFGVTGFAVLLVTSASFAQQQPPPVRIRGQIDKIEGDVLDIKARNGDMVK
Ga0307495_1003319213300031199SoilMHGITRRMFCAVGLSLLAATSVSFAQQPETVRVRGTIEA
Ga0318574_1008654913300031680SoilMNQITRRAFGAAGFALLLATSVSFAQQPPPVRVRGTV
Ga0318509_1033449913300031768SoilMDGITRRAFGAAGFALLLATTTTLAQQQSPTVRVRGTIEGVDGPMLTVK
Ga0318526_1048364013300031769SoilMNHMTRRAFGAAGFVLLLATSASYAQQQPPPVRVLLGIT
Ga0318552_1027304523300031782SoilMNQTTRRAFGAAGFALLLATSVSFAQQPPPVRVRGTVEAVDG
Ga0318523_1015400013300031798SoilMNQMTRRIFAMAGFALLLATSASFAQQPPQTVRIRGQIEKVEGDVLD
Ga0318565_1019080323300031799SoilMNQITRRAFGAAGFALLLATSVSFAQQPPPVRVRGTVEA
Ga0318520_1101902823300031897SoilMNQITRRAFGAAGFALLLATSVSFAQQPPPVRVRGTVEAVDGA
Ga0306921_1205293413300031912SoilMDKMTRRAFGAAGFVLLLSTSATLAQQQAPTVRLR
Ga0310906_1060041713300032013SoilMHPMTRRVLCALGLALLSATSASLAQQPAAVRVRGTIEAVDGAM
Ga0318558_1036749123300032044SoilMNQITRRAFGATGFALLLVTSASFAQQPPPVRVRGTVEA
Ga0268251_1033711013300032159AgaveMNQMTRRVFGVAGFAVLLVTSASFGQQQPPPVRVRGTI
Ga0307471_10374285823300032180Hardwood Forest SoilMNKMTRRMFGASGLALMLASSASFAQQSPPVRVRGTVEGVD
Ga0307472_10166692023300032205Hardwood Forest SoilMNQMTRRVFGVVGFVLLLATSASFAQQPPPVRIRGQIDKVEGDVIDIK
Ga0306920_10350096923300032261SoilMNQIARRALGAAGFALLLATSVSFAQQPPPVRVRGTVEAV
Ga0310914_1044030633300033289SoilMNQITRRALGAAGFALLLATSVSFAQQPPPVRVRGT


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