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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F102719 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 101 |
| Average Sequence Length | 63 residues |
| Representative Sequence | LKLEMDAATPKDPKKLTPDEKKKADEQQKILVQKNNAAVDELQAVVGRFNEQLKIFKAKQKS |
| Number of Associated Samples | 95 |
| Number of Associated Scaffolds | 101 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 12.50 % |
| % of genes near scaffold ends (potentially truncated) | 5.94 % |
| % of genes from short scaffolds (< 2000 bps) | 5.94 % |
| Associated GOLD sequencing projects | 93 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.55 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (96.040 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (20.792 % of family members) |
| Environment Ontology (ENVO) | Unclassified (21.782 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (39.604 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
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| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 60.00% β-sheet: 0.00% Coil/Unstructured: 40.00% | Feature Viewer |
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| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.55 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 101 Family Scaffolds |
|---|---|---|
| PF03453 | MoeA_N | 80.20 |
| PF03454 | MoeA_C | 4.95 |
| PF12804 | NTP_transf_3 | 3.96 |
| PF04055 | Radical_SAM | 2.97 |
| PF08281 | Sigma70_r4_2 | 0.99 |
| PF01967 | MoaC | 0.99 |
| PF00656 | Peptidase_C14 | 0.99 |
| PF00899 | ThiF | 0.99 |
| COG ID | Name | Functional Category | % Frequency in 101 Family Scaffolds |
|---|---|---|---|
| COG0303 | Molybdopterin Mo-transferase (molybdopterin biosynthesis) | Coenzyme transport and metabolism [H] | 85.15 |
| COG0315 | Molybdenum cofactor biosynthesis enzyme MoaC | Coenzyme transport and metabolism [H] | 0.99 |
| COG4249 | Uncharacterized conserved protein, contains caspase domain | General function prediction only [R] | 0.99 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 96.04 % |
| All Organisms | root | All Organisms | 3.96 % |
| Visualization |
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| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 3300012202|Ga0137363_10364727 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 1198 | Open in IMG/M |
| 3300014501|Ga0182024_12025664 | Not Available | 636 | Open in IMG/M |
| 3300015053|Ga0137405_1409662 | Not Available | 2461 | Open in IMG/M |
| 3300018008|Ga0187888_1378112 | Not Available | 536 | Open in IMG/M |
| 3300020580|Ga0210403_10782748 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 759 | Open in IMG/M |
| 3300021180|Ga0210396_10387869 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 1229 | Open in IMG/M |
| 3300026555|Ga0179593_1043868 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 2248 | Open in IMG/M |
| 3300027432|Ga0209421_1053996 | Not Available | 802 | Open in IMG/M |
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 20.79% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 9.90% |
| Palsa | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa | 9.90% |
| Peatland | Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland | 7.92% |
| Bog | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog | 6.93% |
| Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil | 3.96% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 2.97% |
| Untreated Peat Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil | 2.97% |
| Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 2.97% |
| Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil | 2.97% |
| Fen | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen | 2.97% |
| Peatland | Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland | 1.98% |
| Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 1.98% |
| Surface Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil | 1.98% |
| Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere | 1.98% |
| Host-Associated | Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated | 1.98% |
| Bog Forest Soil | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil | 0.99% |
| Bog | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog | 0.99% |
| Freshwater Sediment | Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment | 0.99% |
| Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 0.99% |
| Glacier Forefield Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil | 0.99% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 0.99% |
| Permafrost Soil | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil | 0.99% |
| Fen | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen | 0.99% |
| Bog | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog | 0.99% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil | 0.99% |
| Prmafrost Soil | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil | 0.99% |
| Permafrost | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost | 0.99% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 0.99% |
| Soil | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil | 0.99% |
| Moss Associated | Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Moss Associated | 0.99% |
| Boreal Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil | 0.99% |
| Visualization |
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| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300004120 | Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF238 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300004635 | Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3 | Environmental | Open in IMG/M |
| 3300005538 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 | Environmental | Open in IMG/M |
| 3300005602 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 | Environmental | Open in IMG/M |
| 3300005921 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 | Environmental | Open in IMG/M |
| 3300006102 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013 | Environmental | Open in IMG/M |
| 3300006864 | Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 3 DNA2013-193 | Environmental | Open in IMG/M |
| 3300009090 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG | Environmental | Open in IMG/M |
| 3300009623 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10 | Environmental | Open in IMG/M |
| 3300009649 | Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-059 | Environmental | Open in IMG/M |
| 3300009697 | Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum magellanicum MG | Host-Associated | Open in IMG/M |
| 3300009759 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_10 | Environmental | Open in IMG/M |
| 3300009787 | Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fa - Sphagnum fallax MG | Host-Associated | Open in IMG/M |
| 3300010396 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2 | Environmental | Open in IMG/M |
| 3300010865 | Boreal forest soil eukaryotic communities from Alaska, USA - C3-3 Metatranscriptome (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300012202 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG | Environmental | Open in IMG/M |
| 3300012363 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG | Environmental | Open in IMG/M |
| 3300012685 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG | Environmental | Open in IMG/M |
| 3300012923 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG | Environmental | Open in IMG/M |
| 3300012927 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300013314 | Moss microbial communities from three moss species from boreal forest in Fairbanks, Alaska, USA Reanalysis | Host-Associated | Open in IMG/M |
| 3300014165 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG | Environmental | Open in IMG/M |
| 3300014498 | Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG | Environmental | Open in IMG/M |
| 3300014501 | Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300014838 | Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300015053 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction) | Environmental | Open in IMG/M |
| 3300015054 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction) | Environmental | Open in IMG/M |
| 3300015197 | Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G6B, Proglacial plain, adjacent to northern proglacial tributary) | Environmental | Open in IMG/M |
| 3300016750 | Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300017823 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3 | Environmental | Open in IMG/M |
| 3300017948 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10 | Environmental | Open in IMG/M |
| 3300018008 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_40 | Environmental | Open in IMG/M |
| 3300018026 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_100 | Environmental | Open in IMG/M |
| 3300018040 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150 | Environmental | Open in IMG/M |
| 3300018043 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10 | Environmental | Open in IMG/M |
| 3300018044 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10 | Environmental | Open in IMG/M |
| 3300018047 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10 | Environmental | Open in IMG/M |
| 3300020061 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c1 | Environmental | Open in IMG/M |
| 3300020580 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M | Environmental | Open in IMG/M |
| 3300020581 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M | Environmental | Open in IMG/M |
| 3300021086 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300021180 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O | Environmental | Open in IMG/M |
| 3300021402 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O | Environmental | Open in IMG/M |
| 3300021403 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O | Environmental | Open in IMG/M |
| 3300021404 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O | Environmental | Open in IMG/M |
| 3300021407 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O | Environmental | Open in IMG/M |
| 3300021420 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M | Environmental | Open in IMG/M |
| 3300022530 | Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-O (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300022717 | Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-M (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300025939 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300026281 | Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046 (SPAdes) | Environmental | Open in IMG/M |
| 3300026446 | Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-B | Environmental | Open in IMG/M |
| 3300026555 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction) | Environmental | Open in IMG/M |
| 3300027432 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O2 (SPAdes) | Environmental | Open in IMG/M |
| 3300027591 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027855 | Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027869 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027894 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes) | Environmental | Open in IMG/M |
| 3300028813 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_3 | Environmental | Open in IMG/M |
| 3300029636 | Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300029882 | III_Palsa_E1 coassembly | Environmental | Open in IMG/M |
| 3300029910 | III_Palsa_E2 coassembly | Environmental | Open in IMG/M |
| 3300029914 | III_Bog_E2 coassembly | Environmental | Open in IMG/M |
| 3300029919 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_2 | Environmental | Open in IMG/M |
| 3300029987 | I_Fen_E3 coassembly | Environmental | Open in IMG/M |
| 3300029992 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N2_3 | Environmental | Open in IMG/M |
| 3300030019 | II_Fen_E2 coassembly | Environmental | Open in IMG/M |
| 3300030509 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_2 | Environmental | Open in IMG/M |
| 3300030524 | II_Palsa_N3 coassembly | Environmental | Open in IMG/M |
| 3300030577 | Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO131-ARE010SO (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030580 | II_Palsa_N1 coassembly | Environmental | Open in IMG/M |
| 3300030597 | Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO747-VDE046SO (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030688 | II_Bog_N2 coassembly | Environmental | Open in IMG/M |
| 3300030737 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_2 | Environmental | Open in IMG/M |
| 3300030738 | Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VDE Co-assembly | Environmental | Open in IMG/M |
| 3300030739 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_3 | Environmental | Open in IMG/M |
| 3300030743 | Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VCO Co-assembly | Environmental | Open in IMG/M |
| 3300030763 | Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI5 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030855 | Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA9 Emin (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030934 | Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OB3 Emin (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030973 | Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FB6 Emin (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031018 | Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE5 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031231 | Coassembly Site 11 (all samples) - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031249 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG | Host-Associated | Open in IMG/M |
| 3300031446 | Fir Summer Coassembly Site 11 - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031469 | Fir Spring Coassembly Site 11 - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031524 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3 | Environmental | Open in IMG/M |
| 3300031525 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3 | Environmental | Open in IMG/M |
| 3300031711 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG | Host-Associated | Open in IMG/M |
| 3300031788 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2 | Environmental | Open in IMG/M |
| 3300031918 | III_Fen_N3 coassembly | Environmental | Open in IMG/M |
| 3300033134 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2 | Environmental | Open in IMG/M |
| 3300033818 | Peat soil microbial communities from Stordalen Mire, Sweden - 713 S-3-M | Environmental | Open in IMG/M |
| 3300034124 | Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14 | Environmental | Open in IMG/M |
| 3300034199 | Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_01D_14 | Environmental | Open in IMG/M |
| Geographical Distribution | |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| Ga0058901_15035721 | 3300004120 | Forest Soil | PKDPSKLTPDEKKKVAQHQSILTAKHNAAVDDLQANVGRFNEQLRIYKAKPKT* |
| Ga0062388_1022773551 | 3300004635 | Bog Forest Soil | PKDPSKLSADEKKKALEQEKMLTQKNNAAVDELQAVVGRFNEQLKAYKAAHTP* |
| Ga0070731_102184782 | 3300005538 | Surface Soil | NGEMNSYLDCLKLEMDAATPKDPKKLTPDEKKKADEQQKVLVQKNNAAVDELQAVVGRFNEQLKIYKAKQQKS* |
| Ga0070762_105524461 | 3300005602 | Soil | YLDCLKLEMDAAVPKDPSKMSADEKKKAAEQQNVLVQKNNAAVDELQAVVGRFNEQLKIFKAKQKAAS* |
| Ga0070766_106899902 | 3300005921 | Soil | VYLDCLNLEMDATPKDVSKMSPDEKKKADQEQKALVQKHNAAVDELQAVVGKFNEQLKIFKAKQK* |
| Ga0075015_1009300801 | 3300006102 | Watersheds | NKYLDCIKLEMDAAQPADPSKLTPDEKKKVDEQQKILIQKNNAAVDELQAVVSRFNEQLKIFKAKPKK* |
| Ga0066797_12485731 | 3300006864 | Soil | SKDPSKLSADEKKKALDQEKMLTQKNNSAVDELQAVVGRFNEQLKAYKAAHTP* |
| Ga0099827_117511472 | 3300009090 | Vadose Zone Soil | CLKLEMDAATPKDPKKLTPDEKKKADEQQKILVQKNNAAVDELQAVVGRFNEQLKIFKAKQKS* |
| Ga0116133_11417521 | 3300009623 | Peatland | ANKDYGRYNTEMNGYLDCLKAEMDALTPKDPSKLSADAKKKLDDQQKILVQKSNAAVDELQAAVGRFNEQLKIYKAKQQKS* |
| Ga0105855_12604672 | 3300009649 | Permafrost Soil | DAATPKDPKKLTADEKKKADDQQKILVQKNNAAVDELQANVGRFNEQLKAFKAKSQESK* |
| Ga0116231_106109762 | 3300009697 | Host-Associated | TPKDVSKLTPDQKKQSDDKIKYLVQKSNAAVDELQAAVGRFNEQLKIFKAKQQKS* |
| Ga0116101_10102961 | 3300009759 | Peatland | IPKDPSKLSPDEKKKLDDQQKILVQKSNAAVDELQAAVGRFNEQLKIFKAKQQKS* |
| Ga0116226_107217422 | 3300009787 | Host-Associated | MKAAAKEYGRYNGEMNDYLACLRSASDAATPKDPTKLSADEKKKADDKVKYINQKNDAAVDELQTTVGRFNDQLKIFKAKQQKP* |
| Ga0134126_1000979913 | 3300010396 | Terrestrial Soil | DAAAPKDPTKLTPDEKKKAEAQQKILVQKNNAAVDELQAVVGRFNEQLKIFKAKAKS* |
| Ga0126346_12174352 | 3300010865 | Boreal Forest Soil | LDCIKLEMDAPAPADPSKLTADEKKKADQQHKMYVKKNDAAVDELQAVVGRFNEQLKIYKARNVQ* |
| Ga0137363_103647271 | 3300012202 | Vadose Zone Soil | KDPKKLSADEKKKADEQQKILVQKNNAAVDELQANVGRFNEQLKAFKAKSQESK* |
| Ga0137390_108395791 | 3300012363 | Vadose Zone Soil | RYNTEMNAYLECIKLEMDAATPKDPKKLTPDEKKKADEQQKVLVQKNNAAVDELQANVGRFNEQLKAFKAKSQESK* |
| Ga0137397_105805552 | 3300012685 | Vadose Zone Soil | KLEMDAATPKDPKKLSADEKKKADEQQKILVQKNNAAVDELQANVGRFNEQLKAFKAKSQESK* |
| Ga0137359_103702061 | 3300012923 | Vadose Zone Soil | DCLKLEMDAATPKDPKKLTPDEKKKADEQQKILVQKNNAAVDELQAVVGRFNEQLKIFKAKQKS* |
| Ga0137416_110398142 | 3300012927 | Vadose Zone Soil | YLDCLKLEMDAATPKDPKKLTPDEKKKADDQQKILVQKNNAAVDELQAVVGRFNEQLKLFKAKQKS* |
| Ga0175859_10723801 | 3300013314 | Moss Associated | AYLDCIKLEIAAAAPQNSSKLSKEDKAKAAEQEKVLTQKNNAAVDELNAVVGRFNEQLKIWKAKNAS* |
| Ga0181523_105797332 | 3300014165 | Bog | YNTEMNSYLDCLKLEMDAAAPKDPSKLTPDEKKKADDQQKILVQKNNAAVDELQAAVGRFNEQLKIFKAKQQKS* |
| Ga0182019_112839082 | 3300014498 | Fen | LDCLKLEMDAATPKDPKKLSADEKKKADEQQKVLVQKNNAAVDELQAVVGKFNEQLKIYKAAQAAH* |
| Ga0182024_120256641 | 3300014501 | Permafrost | SKLSKDEKKKVDGQVKVLTEKHDAAVDELHAVAGRFNDQLKAFKAKQQPQ* |
| Ga0182030_102539881 | 3300014838 | Bog | YLDCLKLEMDAATPKDPKKLTPDEKKKSDDQQKILVQKNNAAVDELQAVVGHFNEQLKIFKAKQQKP* |
| Ga0137405_14096625 | 3300015053 | Vadose Zone Soil | MNSYLDCLKLEMDAATPKDPKKLSADEKKKADEQQKILVQKNNAAVDELQAVVGRFNEH* |
| Ga0137420_14440911 | 3300015054 | Vadose Zone Soil | MDAATPKDPKKLSADEKKKADEQQKILVQKNNAAVDELQAVVGRFNEQLKIFKAKQTP* |
| Ga0167638_10049491 | 3300015197 | Glacier Forefield Soil | GEMNSYLDCLKLEMDAATPKDPKKLTADEKKKADEQQKLLVQKNNAAVDELQAVVGRFNEQLKLFKSKQTP* |
| Ga0181505_110834291 | 3300016750 | Peatland | PKDPSKLSPADKKKSDEQLKILTQKNNAAFDELQALVGRFNDQLKAYKAAHTP |
| Ga0187818_100313723 | 3300017823 | Freshwater Sediment | DAAAPKDPSKLTPDEKKKADEQQRILVQKNNAAVDELQANVGRFNDQLKAYKAAHQP |
| Ga0187847_107177201 | 3300017948 | Peatland | RYNNEMNAYLDCIKLEINAATPKDPSKLSKDEKAKAEEQEKILTQKNNSAVDELQAIVGRFNDQLKAYKAKHAAS |
| Ga0187888_13781121 | 3300018008 | Peatland | PKDTSKLSADEKKKAEEHEKVLVQKNNAAVDELQANVGRFNEQLKIFKAKNAKPQ |
| Ga0187857_104101111 | 3300018026 | Peatland | KLEIDAATPKDPSKLSKDDKAKAEEQQKILTQKNNAAVDELQSIVGKFNDQLKAYKAKHAAS |
| Ga0187862_105604612 | 3300018040 | Peatland | YLDCIKLEIDAATPKDPSKLSKDDKAKADQQQKILTQKNNAAVDELQAIVGKFNEQLKAYKAKHAAS |
| Ga0187887_102272281 | 3300018043 | Peatland | EMDAATPKDPSKLSPDEKKKADDQQKILVQKNNAAVDELQAVVGHFNEQLKIFKAKQQKS |
| Ga0187890_102904561 | 3300018044 | Peatland | LEIDAATPKDPSKLSKDDKAKADQQQKILTQKNNAAVDELQAIVGKFNEQLKAYKAKHAA |
| Ga0187859_105734612 | 3300018047 | Peatland | DCLNLEMDASPKDVSKMTPDEKKKADQEQKALVQKHNAAVDELQAVVGKFNEQLKIFKAKQK |
| Ga0193716_10923352 | 3300020061 | Soil | NLEMDAQPKDKDLSKLSPDEKKKADQAAKVLVQKHNAAVDELQAVVGRFNEQLKIFKAKQ |
| Ga0210403_107827482 | 3300020580 | Soil | APKDPAKMTPDEKKKADQENKILVQKHNAAVDELQAVVGKFNEQLKIFKAKQK |
| Ga0210399_101539093 | 3300020581 | Soil | PKDPKKLTADEKKKADDQQKILVQKNNAAVDELTAVVGRFNEQLKIYKAKVAAAPKQ |
| Ga0179596_106634252 | 3300021086 | Vadose Zone Soil | KDPKKLTADEKKKADEQQKVLVQKNNAAVDELQANVGRFNEQLKAFKAKSQAPQ |
| Ga0210396_103878691 | 3300021180 | Soil | DPKKLTPDEKKQSDEQQKVLVQKNNAAVDELQAVVGRFNEQLKIYKAKAAASKS |
| Ga0210385_103055711 | 3300021402 | Soil | NGEMNTYLDCIKLETDAATPKDPSKLTADEKKKAAEQQKVLAQKNNAAVDELQAVVGKFNEQLKLYKARQQKS |
| Ga0210397_103435022 | 3300021403 | Soil | MNSYLDCLKLEMDAATPKDPKKLTPDEKKKADEQQKVLVQKNNAAVDELQAVVGRFNEQLKIYKAKQQKS |
| Ga0210389_107933202 | 3300021404 | Soil | KLEMDAATPKDPKKLTAEEKKKSDEQQKMLVQKNNAAVDELQAVVGRFNEQLKIFKAKQQKS |
| Ga0210383_106036652 | 3300021407 | Soil | IDAAVPKDPTKLTQDERKKAIQQQTMLTAKHNAAVDDLQANVGRFNEQLRIYKAKPKT |
| Ga0210394_105229222 | 3300021420 | Soil | ATPKDPKKLTPEEKKKADEQQKILVQKNNAAVDELQAVVGRFNEQLKIFKAKQQKS |
| Ga0242658_12482502 | 3300022530 | Soil | LDCLNLEMDAAPKDLSKMTPDEKKKADQEQKVLVQKHNAAVDELQAVVGRFNEQLKIFKAKQK |
| Ga0242661_11626312 | 3300022717 | Soil | EIDAAAPKDPSKLTKDEQAKVKQQQAILTQKHNAAVDELQAVVGRFNEQLKIFKAKQKS |
| Ga0207665_105604911 | 3300025939 | Corn, Switchgrass And Miscanthus Rhizosphere | LDCLKLEMDAAAPKDPSKLSPDEKKKADDQQKILVQKNNAAVDELQAVVGRFNEQLKIFKAKQKPS |
| Ga0209863_102096342 | 3300026281 | Prmafrost Soil | CLNLEMDATPKDLSKLTPDEKKKADQEQKILVQKHNAAVDELQAVVGKFNEQLKIFKAKK |
| Ga0257178_10592421 | 3300026446 | Soil | TYLDCLKLEMDAATPKDPKKLTPDEKKKADEQQKILVQKNNAAVDELQAVVGRFNEQLKIFKAKQKS |
| Ga0179593_10438682 | 3300026555 | Vadose Zone Soil | MDAATPKDPKKLTPDEKKKSDEQQKILVQKNNAAVDELQAVVGRFNEQLKIFKAKQQKS |
| Ga0209421_10539961 | 3300027432 | Forest Soil | PPPADPSKLTPDEKKKADQQHKLYVKKNDAAVDELQAVVGRFNEQLKIYKARQTP |
| Ga0209733_11442111 | 3300027591 | Forest Soil | LEMDAAAPKDPKKLTPDEKKKSDDQQKILVQKNNAAVDELQAVVGRFNEQLKIFKAKQQK |
| Ga0209693_102564892 | 3300027855 | Soil | MNSYLDCLKLEMDAATPKDPKKLTPDEKKKADDQQKILVQKNNAAVDELTAVVGRFNEQLKIYKAKVAAAPKP |
| Ga0209579_105779712 | 3300027869 | Surface Soil | CLKLEMDAATPKDPKKLTPDEKKKADEQQKVLVQKNNAAVDELQAVVGRFNEQLKIYKAKQQKS |
| Ga0209068_101102841 | 3300027894 | Watersheds | YLDCIKQLLDAATPKDPSKLSADDKKKALEQEKMLTQKNNAAVDELQTVVGRFNEQLKAYKAAHTP |
| Ga0302157_100409305 | 3300028813 | Bog | NKDYGRYNTEMNAYLDCLKGELDAAAPKDPSKLSADEKKKADDKQKILVQKSNAAVDELQAAVGRFNEQLKIYKAKLQKP |
| Ga0222749_105360301 | 3300029636 | Soil | LEISAAPPKDPSKLTPDEKKKADQENKILVQKHNAAVDELQAVVGKFNEQLKIFKAKQR |
| Ga0311368_105168522 | 3300029882 | Palsa | LQLEINSSAPADPSKLSADDKKKMAQQQAILTQKHNAAVDELQAVVGHFNEQLRIYKAKHTQ |
| Ga0311369_111034512 | 3300029910 | Palsa | LEMDAATPKDPSKLSADEKKKADQQSKVLAQKNNAAVDELQANVGRFNEQLKIYKAKAAAAK |
| Ga0311359_100260321 | 3300029914 | Bog | PKDKSKLSADEKKKADEQEKMLVQKNNAAVDELQANVGKFNEQLKIFKAKAAAQ |
| Ga0302141_12248922 | 3300029919 | Bog | AITVADVKGMTDDQKKANDQQRKVKEKLVQQNNAAVDELQANVGRFNEQLKIFKAKQQKS |
| Ga0311334_109970381 | 3300029987 | Fen | CIKLEMDAATPADPSKLTPDEKKKVDDQQKILIQKNNAAVDGLQAVVARFNEQLKIFKARPKK |
| Ga0302276_100926571 | 3300029992 | Bog | QDASKLKPEEKKKNDDQVKILVAKNNAAVDELQAVVGRFNDQLKAYKAAHATPAPAQ |
| Ga0311348_110800162 | 3300030019 | Fen | TPADPSKLTPDEKKKVDDQQKILIQKNNAAVDELQAVVARFNEQLKIFKARPKK |
| Ga0302183_103117821 | 3300030509 | Palsa | GEMNSYLDCLKLEMDAAAPKDPSKLSADEKKKADDQQKILVQKNNAAVDELQAVVGHFNEQLKIFKAKQKS |
| Ga0311357_104192651 | 3300030524 | Palsa | DCLNLEMDATPKDVSKMSPDEKKKADQEQKALVQKHNAAVDELQAVVGKFNEQLKIFKAKQK |
| Ga0311357_104493952 | 3300030524 | Palsa | SYLDCLKLEMDAAAPKDPSKLTADEKKKVEDQQKILVQKNNAAVDELQAVVGHFNEQLKIFKAKQQKS |
| Ga0210260_102273231 | 3300030577 | Soil | DKLTPADTSKLSPEQKKKMDEQAKALVAKNNAAVDELQAVVGKFNDQLKAYKAAHAAPAPAQ |
| Ga0311355_106928481 | 3300030580 | Palsa | DCLKLEMDSASPKDPSKLTADDKKKAAEQEKILVQKNNAAVDELQVNVGRFNEQLKAYKAAHQP |
| Ga0210286_12056421 | 3300030597 | Soil | RYNGEMNVYLDCLNLEMDATPKDLTKMTSDEKKKADQEQKALVQKHNAAVDELQAVVGKFNEQLKIFKAKQK |
| Ga0311345_103776301 | 3300030688 | Bog | EIDAATPKDPSKLSKDDKAKADQQQKILTQKNNAAVDELQAIVGKFNEQLKAYKAKHAAS |
| Ga0302310_103509191 | 3300030737 | Palsa | YLDCIKLEIQALPKDAKMSKDDKAKAAAQEKALDQKNNAAVDELNGVVGRFNEQLKIWKAKNAS |
| Ga0265462_111078612 | 3300030738 | Soil | GEINVYLDCLNLEMDATPKDQTKMTSDEKKKAEQEQKVLVQKHNAAVDELQAVVGKFNEQLKIFKAKQK |
| Ga0265462_119540792 | 3300030738 | Soil | PKDPSKLSKDEKAKAEEQEKVLTQKNNAAVDELQQVVGRFNEQLKAWKAAHAS |
| Ga0302311_100112231 | 3300030739 | Palsa | NTYLDCLKLEMDAATPKDPSKLSADEKKKADQQSKLLAQKNNAAVDELQANVGRFNEQLKIYKAKAAAAK |
| Ga0302311_108097411 | 3300030739 | Palsa | KLEMDAAAPKDPKKPTPEEKKQAAILVQKNNAAVDELQAVVGRFNEQLKLYKAKAAASKS |
| Ga0265461_108304142 | 3300030743 | Soil | MDANPKDVSKLTPDEKKKAEQEQKALVQRHNAAVDELQAVVGKFNEQLKIFKAKQK |
| Ga0265461_135594641 | 3300030743 | Soil | SASPKDPSKLTADEKKKAAEQEKILVQKNNAAVDELQANVGRFNDQLKAYKAAHQP |
| Ga0265763_10255631 | 3300030763 | Soil | MDATPKDPTKMSPDEKKKADQEQKALVQKHNAAVDELQAVVGKFNEQLKIFKAKQK |
| Ga0075374_100127142 | 3300030855 | Soil | LKLEMDAATPKDPKKLTPDEKKKADEQQKILVQKNNAAVDELQAVVGRFNEQLKIFKAKQKS |
| Ga0075391_111473791 | 3300030934 | Soil | SYLDCLKLEMDAATPKDPKKLTPDEKKKADEQQKILVQKNNAAVDELQAVVGRFNEQLKIFKAKQKS |
| Ga0075395_112299602 | 3300030973 | Soil | YLDCLKLEMDAAAPKDPSKLSAAEKKKADDQQKILVQKNNAAVDELQAVVGRFNEQLKIFKAKQKPS |
| Ga0265773_10287852 | 3300031018 | Soil | YLDCLKLEMDAATPKDPKKLTPDEKKKADEQQKVLVQKNNAAVDELQAVVGRFNEQLKIYKAKQQKS |
| Ga0170824_1043354582 | 3300031231 | Forest Soil | LEMDAATPKDPKKLTPDEKKKADEQQKVLVQKNNAAVDELQANVGRFNEQLKAFKAKSQESK |
| Ga0170824_1086934281 | 3300031231 | Forest Soil | GRDAYLDCLKSEIDSNKKETSKLSADEKKKADEQQKMLIQKNNAAVDELQANVGRFNEQLKIYKAKNSKT |
| Ga0265339_101412921 | 3300031249 | Rhizosphere | DCLKLEIDAATPKDASKLKGDEKKKVEEQQKALVQKNNAAVDELQSVVGRFNEQLKIFKAKNAAGKS |
| Ga0170820_127630783 | 3300031446 | Forest Soil | LDCLKLEMDAAAPKDPSKLSADEKKKADDQQKILVQKNNAAVDELQAVVGRFNEQLKIFKAKQKPS |
| Ga0170819_169506322 | 3300031469 | Forest Soil | MRISNVKLEMDAATPKDPKKLTPDEKKKADEQQKVLVQKNNAAVDELQANVGRFNEQLKAFKAKSQESK |
| Ga0302320_118705662 | 3300031524 | Bog | GEMNSYLDCLKLEIDAATPKDPKKMSADEKKAAEEQQKQLVQKNNAAVDELTAAVGHFNEQLKIYKARAAQ |
| Ga0302326_135590022 | 3300031525 | Palsa | LSKLTADEKKKAYEQQKILDQKHNAAFDELTAVVSRFNEQLRIFKARPKS |
| Ga0265314_104021712 | 3300031711 | Rhizosphere | KLEIDAAAPKDPSKLTPDEKKKADAQQKILVQKNNAAVDELQAVVGRFNEQLKIFKAKAK |
| Ga0302319_101092891 | 3300031788 | Bog | LDCLKLASDAATPKDLSKLTPDEKKKYDDQQKILVQKSNAAVDELQAAVGRFNEQLKIFKAKQQKS |
| Ga0311367_113963011 | 3300031918 | Fen | YLDCLKLEMDAATPKDPKKLSADEKKKADEQQKVLVQKNNAAVDELQAVVGKFNEQLKLFKATQAQAK |
| Ga0335073_110066601 | 3300033134 | Soil | MNAYLDCIKLEIDAATPKDPSKLSKEEKEKADEQQKILTQKNNAAVDELQAIVGKFNDQLKAYKAKHAS |
| Ga0334804_003252_8061_8225 | 3300033818 | Soil | PKDPSKLSKDDKAKADQQQKILTQKNNAAVDELQAIVGKFNEQLKAYKAKHAAS |
| Ga0370483_0286114_319_567 | 3300034124 | Untreated Peat Soil | AKHDFDRYNGEMNSYLDCLKLEMDAATPKDPKKLTADEKKKADDQQKILVQKNNAAVDELQANVGRFNEQLKIYKATAAAAK |
| Ga0370514_059649_19_198 | 3300034199 | Untreated Peat Soil | MDAATPKDPKKLTPDEKKKADEQQKVLVQKNNAAVDELQAVVGRFNEQLKIYKAKQQKS |
| Ga0370514_185139_14_193 | 3300034199 | Untreated Peat Soil | MDAATPKDPSKLSPDEKKKADDQQKILVQKNNAAVDELQAVVGHFNEQLKIFKAKQQKS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |