NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F102548

Metagenome Family F102548

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F102548
Family Type Metagenome
Number of Sequences 101
Average Sequence Length 58 residues
Representative Sequence MSTFKKWLLIVIVTIALLHTVGGGFADMFGSSFFSAAHGWNEGLIYMLLALVVAIAVK
Number of Associated Samples 68
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 70.30 %
% of genes near scaffold ends (potentially truncated) 18.81 %
% of genes from short scaffolds (< 2000 bps) 57.43 %
Associated GOLD sequencing projects 60
AlphaFold2 3D model prediction Yes
3D model pTM-score0.66

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (92.079 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake
(29.703 % of family members)
Environment Ontology (ENVO) Unclassified
(82.178 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(85.149 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 55.81%    β-sheet: 0.00%    Coil/Unstructured: 44.19%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.66
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 101 Family Scaffolds
PF01192RNA_pol_Rpb6 37.62
PF01194RNA_pol_N 13.86
PF00352TBP 2.97
PF08719NADAR 2.97
PF05704Caps_synth 1.98
PF02150RNA_POL_M_15KD 1.98
PF08795DUF1796 1.98
PF00636Ribonuclease_3 1.98
PF02902Peptidase_C48 0.99
PF01391Collagen 0.99
PF06739SBBP 0.99
PF08707PriCT_2 0.99
PF09553RE_Eco47II 0.99
PF11350DUF3152 0.99
PF05204Hom_end 0.99
PF00145DNA_methylase 0.99
PF02137A_deamin 0.99
PF04851ResIII 0.99
PF01555N6_N4_Mtase 0.99

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 101 Family Scaffolds
COG1758DNA-directed RNA polymerase, subunit K/omegaTranscription [K] 37.62
COG2101TATA-box binding protein (TBP), component of TFIID and TFIIIBTranscription [K] 2.97
COG3236N-glycosidase YbiA/RibX (riboflavin biosynthesis, damage control), NADAR superfamilyDefense mechanisms [V] 2.97
COG1594DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIISTranscription [K] 1.98
COG0270DNA-cytosine methylaseReplication, recombination and repair [L] 0.99
COG0863DNA modification methylaseReplication, recombination and repair [L] 0.99
COG1041tRNA G10 N-methylase Trm11Translation, ribosomal structure and biogenesis [J] 0.99
COG2189Adenine specific DNA methylase ModReplication, recombination and repair [L] 0.99
COG5160Protease, Ulp1 familyPosttranslational modification, protein turnover, chaperones [O] 0.99


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A92.08 %
All OrganismsrootAll Organisms7.92 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002835|B570J40625_100062213Not Available5085Open in IMG/M
3300002835|B570J40625_101670475Not Available519Open in IMG/M
3300002835|B570J40625_101704630Not Available512Open in IMG/M
3300002933|G310J44882_10002236Not Available8020Open in IMG/M
3300003793|Ga0007847_105606Not Available691Open in IMG/M
3300003796|Ga0007865_1003920Not Available1842Open in IMG/M
3300003802|Ga0007840_1013518Not Available530Open in IMG/M
3300004240|Ga0007787_10295971Not Available800Open in IMG/M
3300004240|Ga0007787_10545880Not Available580Open in IMG/M
3300005584|Ga0049082_10144228Not Available827Open in IMG/M
3300005662|Ga0078894_10164231Not Available2001Open in IMG/M
3300005662|Ga0078894_10176513Not Available1928Open in IMG/M
3300005662|Ga0078894_10298751Not Available1460Open in IMG/M
3300005662|Ga0078894_10309064Not Available1433Open in IMG/M
3300005662|Ga0078894_10363397Not Available1310Open in IMG/M
3300005662|Ga0078894_10380502Not Available1276Open in IMG/M
3300005662|Ga0078894_10425276Not Available1198Open in IMG/M
3300005662|Ga0078894_10791530Not Available830Open in IMG/M
3300005662|Ga0078894_10866638Not Available785Open in IMG/M
3300005662|Ga0078894_10897739Not Available769Open in IMG/M
3300005662|Ga0078894_11113243Not Available673Open in IMG/M
3300005662|Ga0078894_11232203Not Available632Open in IMG/M
3300005662|Ga0078894_11350150Not Available597Open in IMG/M
3300006116|Ga0007807_1006442Not Available3033Open in IMG/M
3300007708|Ga0102859_1171291Not Available640Open in IMG/M
3300008055|Ga0108970_10761452Not Available825Open in IMG/M
3300008055|Ga0108970_11610066Not Available514Open in IMG/M
3300009068|Ga0114973_10025741Not Available3605Open in IMG/M
3300009068|Ga0114973_10189434Not Available1128Open in IMG/M
3300009151|Ga0114962_10002272Not Available16137Open in IMG/M
3300009151|Ga0114962_10096698Not Available1845Open in IMG/M
3300009151|Ga0114962_10491523Not Available650Open in IMG/M
3300009152|Ga0114980_10000184Not Available42302Open in IMG/M
3300009152|Ga0114980_10002540Not Available12780Open in IMG/M
3300009154|Ga0114963_10045399All Organisms → Viruses → Predicted Viral2833Open in IMG/M
3300009159|Ga0114978_10001506Not Available19572Open in IMG/M
3300009163|Ga0114970_10097996Not Available1817Open in IMG/M
3300009164|Ga0114975_10043860Not Available2651Open in IMG/M
3300009182|Ga0114959_10000333Not Available44071Open in IMG/M
3300009182|Ga0114959_10006593Not Available8455Open in IMG/M
3300009419|Ga0114982_1000684Not Available17972Open in IMG/M
3300009419|Ga0114982_1017666Not Available2402Open in IMG/M
3300010157|Ga0114964_10201490Not Available956Open in IMG/M
3300010160|Ga0114967_10405779Not Available679Open in IMG/M
3300010160|Ga0114967_10614945Not Available521Open in IMG/M
3300011116|Ga0151516_10099Not Available45783Open in IMG/M
3300011116|Ga0151516_10157All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Parasitiformes → Ixodida → Ixodoidea → Ixodidae → Ixodinae → Ixodes → Ixodes ricinus37492Open in IMG/M
3300011116|Ga0151516_10934Not Available12848Open in IMG/M
3300012000|Ga0119951_1054561Not Available1122Open in IMG/M
3300012665|Ga0157210_1002613Not Available4544Open in IMG/M
3300013005|Ga0164292_10466776Not Available832Open in IMG/M
3300013006|Ga0164294_10040860Not Available3651Open in IMG/M
3300020048|Ga0207193_1001119Not Available48185Open in IMG/M
3300020048|Ga0207193_1018826Not Available8824Open in IMG/M
3300020172|Ga0211729_10631078Not Available1751Open in IMG/M
3300020172|Ga0211729_10894284Not Available14070Open in IMG/M
3300020205|Ga0211731_11273307Not Available6930Open in IMG/M
3300020572|Ga0207909_1041162Not Available746Open in IMG/M
3300020703|Ga0214227_1012382Not Available815Open in IMG/M
3300021131|Ga0214206_1022696Not Available760Open in IMG/M
3300021519|Ga0194048_10138883Not Available918Open in IMG/M
3300023174|Ga0214921_10005364Not Available18158Open in IMG/M
3300023174|Ga0214921_10012248Not Available10289Open in IMG/M
3300023174|Ga0214921_10096077All Organisms → Viruses → Predicted Viral2251Open in IMG/M
3300023184|Ga0214919_10002709Not Available27480Open in IMG/M
3300023184|Ga0214919_10003288Not Available24593Open in IMG/M
3300025379|Ga0208738_1003287Not Available3232Open in IMG/M
3300025405|Ga0208381_1021539All Organisms → cellular organisms → Bacteria1015Open in IMG/M
3300025418|Ga0208253_1058967Not Available632Open in IMG/M
3300025421|Ga0207958_1021507Not Available1057Open in IMG/M
3300025487|Ga0208105_1009598Not Available2073Open in IMG/M
3300025606|Ga0207954_1150290Not Available547Open in IMG/M
3300025782|Ga0208867_1049779Not Available582Open in IMG/M
3300025785|Ga0208498_1007171Not Available2453Open in IMG/M
3300027121|Ga0255074_1037825Not Available599Open in IMG/M
3300027138|Ga0255064_1023177Not Available1054Open in IMG/M
3300027508|Ga0255072_1109292Not Available543Open in IMG/M
3300027708|Ga0209188_1000390Not Available44033Open in IMG/M
3300027710|Ga0209599_10000060All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Imitervirales → Mimiviridae81005Open in IMG/M
3300027733|Ga0209297_1029150Not Available2576Open in IMG/M
3300027736|Ga0209190_1017127Not Available4132Open in IMG/M
3300027741|Ga0209085_1009644All Organisms → Viruses → Predicted Viral4872Open in IMG/M
3300027749|Ga0209084_1011470Not Available5301Open in IMG/M
3300027754|Ga0209596_1011276Not Available5871Open in IMG/M
3300027754|Ga0209596_1298303Not Available641Open in IMG/M
3300027759|Ga0209296_1333189Not Available591Open in IMG/M
3300027759|Ga0209296_1334165Not Available589Open in IMG/M
3300027760|Ga0209598_10082662Not Available1552Open in IMG/M
3300027763|Ga0209088_10000019All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes146518Open in IMG/M
3300027769|Ga0209770_10215687Not Available753Open in IMG/M
3300027892|Ga0209550_10724085Not Available569Open in IMG/M
3300027969|Ga0209191_1172600Not Available868Open in IMG/M
3300027971|Ga0209401_1200297Not Available745Open in IMG/M
3300028025|Ga0247723_1012379Not Available3212Open in IMG/M
3300028393|Ga0304728_1085992Not Available1227Open in IMG/M
3300034107|Ga0335037_0000053All Organisms → cellular organisms → Bacteria79923Open in IMG/M
3300034116|Ga0335068_0483639Not Available576Open in IMG/M
3300034117|Ga0335033_0083117Not Available1878Open in IMG/M
3300034117|Ga0335033_0304010Not Available817Open in IMG/M
3300034167|Ga0335017_0369305Not Available784Open in IMG/M
3300034272|Ga0335049_0096308Not Available2160Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake29.70%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake16.83%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater12.87%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater11.88%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater6.93%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater4.95%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater2.97%
Deep SubsurfaceEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface2.97%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater1.98%
Freshwater Lake SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment1.98%
EstuaryHost-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary1.98%
Freshwater LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic0.99%
Anoxic Zone FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater0.99%
FreshwaterEnvironmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater0.99%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine0.99%
Deep Subsurface SedimentEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment0.99%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002835Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)EnvironmentalOpen in IMG/M
3300002933Combined Assembly of freshwater hypolimnion microbial communities from Trout Bog Lake, Wisconsin, USAEnvironmentalOpen in IMG/M
3300003793Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH24Jun08EnvironmentalOpen in IMG/M
3300003796Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jul09EnvironmentalOpen in IMG/M
3300003802Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE29Oct07EnvironmentalOpen in IMG/M
3300004240Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SNEnvironmentalOpen in IMG/M
3300005584Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRFEnvironmentalOpen in IMG/M
3300005662Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)EnvironmentalOpen in IMG/M
3300006116Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE12Aug09EnvironmentalOpen in IMG/M
3300007708Estuarine microbial communities from the Columbia River estuary - metaG 1371B-02EnvironmentalOpen in IMG/M
3300008055Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393Host-AssociatedOpen in IMG/M
3300009068Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaGEnvironmentalOpen in IMG/M
3300009151Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaGEnvironmentalOpen in IMG/M
3300009152Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaGEnvironmentalOpen in IMG/M
3300009154Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaGEnvironmentalOpen in IMG/M
3300009159Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaGEnvironmentalOpen in IMG/M
3300009163Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaGEnvironmentalOpen in IMG/M
3300009164Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaGEnvironmentalOpen in IMG/M
3300009182Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaGEnvironmentalOpen in IMG/M
3300009419Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FTEnvironmentalOpen in IMG/M
3300010157Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_MF_MetaGEnvironmentalOpen in IMG/M
3300010160Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaGEnvironmentalOpen in IMG/M
3300011116Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015NovEnvironmentalOpen in IMG/M
3300012000Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007AEnvironmentalOpen in IMG/M
3300012665Freshwater microbial communities from Talbot River, Ontario, Canada - S11EnvironmentalOpen in IMG/M
3300013005Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaGEnvironmentalOpen in IMG/M
3300013006Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaGEnvironmentalOpen in IMG/M
3300020048Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915EnvironmentalOpen in IMG/M
3300020172Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1EnvironmentalOpen in IMG/M
3300020205Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1EnvironmentalOpen in IMG/M
3300020572Freshwater microbial communities from Lake Mendota, WI - 05MAY2010 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020703Freshwater microbial communities from Trout Bog Lake, WI - 16OCT2007 hypolimnionEnvironmentalOpen in IMG/M
3300021131Freshwater microbial communities from Trout Bog Lake, WI - 07JUL2009 epilimnionEnvironmentalOpen in IMG/M
3300021519Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5mEnvironmentalOpen in IMG/M
3300023174Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505EnvironmentalOpen in IMG/M
3300023184Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503EnvironmentalOpen in IMG/M
3300025379Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09 (SPAdes)EnvironmentalOpen in IMG/M
3300025405Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE13Jul09 (SPAdes)EnvironmentalOpen in IMG/M
3300025418Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Oct08 (SPAdes)EnvironmentalOpen in IMG/M
3300025421Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jul07 (SPAdes)EnvironmentalOpen in IMG/M
3300025487Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE16Jul07 (SPAdes)EnvironmentalOpen in IMG/M
3300025606Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA0M (SPAdes)EnvironmentalOpen in IMG/M
3300025782Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE05Oct08 (SPAdes)EnvironmentalOpen in IMG/M
3300025785Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE12Aug09 (SPAdes)EnvironmentalOpen in IMG/M
3300027121Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepC_8hEnvironmentalOpen in IMG/M
3300027138Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepB_0hEnvironmentalOpen in IMG/M
3300027508Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepA_8hEnvironmentalOpen in IMG/M
3300027708Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027710Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes)EnvironmentalOpen in IMG/M
3300027733Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027736Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027741Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027749Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027754Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027759Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027760Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027763Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027769Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)EnvironmentalOpen in IMG/M
3300027892Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (SPAdes)EnvironmentalOpen in IMG/M
3300027969Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027971Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300028025Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FCEnvironmentalOpen in IMG/M
3300028393Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_MF_MetaG (v2)EnvironmentalOpen in IMG/M
3300034107Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Apr2017-rr0133EnvironmentalOpen in IMG/M
3300034116Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOREnvironmentalOpen in IMG/M
3300034117Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jun2014-rr0124EnvironmentalOpen in IMG/M
3300034167Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Apr2015-rr0082EnvironmentalOpen in IMG/M
3300034272Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2017-rr0156EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
B570J40625_10006221313300002835FreshwaterMSTFKKWLLLAIVTVALFHTVGGSLADILGGGTSLFSPAHGWNEGLIYMLLAIVVAIAVK
B570J40625_10167047513300002835FreshwaterMSTFKKWLLIVIVGIALLHTMGGGFSDMLGLSFFSPAHGWNEGLIFMLLAVVVAIAVK*
B570J40625_10170463023300002835FreshwaterMSTFKKWLLLAIVAVALFHTFGGSLADVFGGGTSLFTPAHGWNEGLIYMLLAIVVAIAVK
G310J44882_1000223653300002933FreshwaterMSTLKKWLLFLIVAVALFHTVGGSFADVFGGGTSXFTPAHGWNEGLIYMLLALVVAVAMK
Ga0007847_10560633300003793FreshwaterMSTLKKWLLFLIVAVALFHTVGGSFADVFGGGTSMFTPAHGWNEGLIYMLLALVVAVA
Ga0007865_100392043300003796FreshwaterMSTFKKWLLLVIVAVALFHTFAGGAADLLGGTVTFSAAHGWNEGLIYMLLAVVVAIAVK*
Ga0007840_101351823300003802FreshwaterMSTLKKWLLFLIVAVALFHTVGGSFADVFGGGTSMFTPAHGWNEGLIYMLLALVVAVAMK
Ga0007787_1029597133300004240Freshwater LakeMSTFKKWLLIIIIVIALLHTVGGGFADMFGGTFFTAQHGWNEGLIFMILALVV
Ga0007787_1054588023300004240Freshwater LakeMSTFKKWLLIIIVVIALLHTIGGGFADMFGAGFFTAQHGWNEGFIYMLLALVVAVAMK*
Ga0049082_1014422833300005584Freshwater LenticMSTFKKWLLIIIIVIALLHTIGGGFADMFGAGFFTAQHGWNEGFIYMLLALVVAVAMK*
Ga0078894_1016423133300005662Freshwater LakeMSTFKKWLLIIIVIIALLHTIGGGFADMFGAGFFTAQHGWNEGFIYMLLALVIAVALK*
Ga0078894_1017651353300005662Freshwater LakeMSTFKKWLLIIIVVIALLHTIGGGFADMFGAGFFTAQHGWNEGFIYMLLALVVAIAIK*
Ga0078894_1029875143300005662Freshwater LakeMSTFKKWLLIIIVAIALIHTIGGGFADMFGPLVYPFSSAHGWNEGLIFMILALVVSIALK
Ga0078894_1030906413300005662Freshwater LakeMSTFKKWLLIIIVVIALLHTVGGGFADMFGGMFFTASHGWNEGLIYMLLALVVAIALK*
Ga0078894_1036339723300005662Freshwater LakeMSTFKKWLLIIIVVIALIHTVGGGFADMFGPFVYPFSSAHGWNEGLNFMILALVVAIALK
Ga0078894_1038050223300005662Freshwater LakeMSTFKKWLLIIIIVIALLHTVGGGFADMFGGMFFTASHGWNEGLIYMLLALVVAIAVK*
Ga0078894_1042527613300005662Freshwater LakeIVVIALIHTVGGGFADMFGPLVYPFSSAHGWNEGLIFMILALVVAIALK*
Ga0078894_1079153023300005662Freshwater LakeMSTFKKWLLIIIIVIALIHTIGGGFADMFGPIMYPFSSAHGWNEGLIFMILALVVSIALK
Ga0078894_1086663833300005662Freshwater LakeMSTFKKWLLIIIISIALLHTIGGGFADMFGGGFFTAQHGWNEGFIYMLLALVVSIALK*
Ga0078894_1089773933300005662Freshwater LakeMSTFKKWLLLAVIAVALFHTFGGSLADVFGRGTSLFTPAHGWNEGLIYMLLAI
Ga0078894_1111324323300005662Freshwater LakeMSTFKKWLLIIIIVIALLHTVGGGFADMFGGTFFTAQHGWNEGLIFMILALVVAIAVK*
Ga0078894_1123220323300005662Freshwater LakeMSTFKKWLLIIIIVIALLHTIGGGFADMFGAGFFTAQHGWNEGFIYMLLALVVAIAVK*
Ga0078894_1135015023300005662Freshwater LakeMSTFKKWLLIIIVVIALLHTIGGGFADMFGGTFFTAQHGWNEGFIYMLLALVVAVAVK*
Ga0007807_100644213300006116FreshwaterMSTFKKWLLLVIVVVALFHTFAGDVADLLGGTVTFSAAHGWNEGLIYMLLAVVVAIAVK*
Ga0102859_117129123300007708EstuarineMSTFKKWLLIIIVVIALIHTVGGGFADMFGGRFFSAEHGWNEGLIYMLLALVVAIALK*
Ga0108970_1076145223300008055EstuaryMSTFKKWLLIIIIVIALLHTIGGGFADMFGGGFFTAQHGWNEGFIYMLLALVVAVAMK*
Ga0108970_1161006623300008055EstuaryIIVVIALIHTVGGGFADMFGPFVYPFSSAHGWNEGLIFMILALVVSIALK*
Ga0114973_1002574143300009068Freshwater LakeMSTFKKWLLIVIVIIALLHTVGGGFADMFGSPFFSPAHGWNEGLIYMLLALVVAIAVK*
Ga0114973_1018943433300009068Freshwater LakeMSTFKKWLLIIIVIIALLHTIGGGFADMFGGGFFTAQHGWNEGFIYMLLALVVAVAMK*
Ga0114962_10002272123300009151Freshwater LakeMSTFKKWLLLVIVGIALLHTVGGGFSDMFGLSFFSAAHGWNEGLIYMLLALVVAIAVK*
Ga0114962_1009669843300009151Freshwater LakeMSTFKKWLLLVIVTVALFHTVGGGFADMLGGGTSLFSPAHGWNEGLIYMILALVVAIAIK
Ga0114962_1049152333300009151Freshwater LakeTFKKWLLLVIVGIALLHTVAGGFADMFGLSFFSPAHGWNEGIIFMLLAVVVAIAVK*
Ga0114980_10000184203300009152Freshwater LakeMSTFKKWLLIVIVTIALLHTVGGGFADMFGSPFFSPAHGWNEGLIYMMLALVVAIAVK*
Ga0114980_1000254023300009152Freshwater LakeMYKNWLLIIIIVIALLHTIGGGLADMFGGGFFTAQHGWNEGLIYMLLALVVAIAMK*
Ga0114963_1004539963300009154Freshwater LakeMSTFKKWLLLVIVVVALLHTVGGGFADMFGSSFFSAAHGWNEGLIYMLLALVVAIAVK*
Ga0114978_1000150633300009159Freshwater LakeMSTFKKWLLLVIVAIALLHSFGGSLADVFGGGFTSAHGWNEAVIYMLLAIVVAIAVK*
Ga0114970_1009799633300009163Freshwater LakeMSTFKKWLLIVIMIIALLHTVGGGFADMFGSPFFSPAHGWNEGLIYMLLALVVAIAVK*
Ga0114975_1004386043300009164Freshwater LakeMSTFKKWLLLAVVAVALFHTFGGSLADVFGGGTSLFTPAHGWNEGLIYMLLAIVVAIAVK
Ga0114959_10000333243300009182Freshwater LakeMTTFKKWLLLVIVGIALLHTVAGGFADMFGLSFFSPAHGWNEGIIFMLLAVVVAIAVK*
Ga0114959_1000659383300009182Freshwater LakeMSTFKKWLLLVIVAVALFHTFAGGVADLLGGAVTFSAAHGWNEGLIYMLLAVVVAIAVK*
Ga0114982_100068463300009419Deep SubsurfaceMYKNWLLIIIIVIALLHTIGGGFADMFGGGFFTAQHGWNEGLIYMLLALVVAVAMK*
Ga0114982_101766633300009419Deep SubsurfaceMSTFKKWLLIIIVVIALLHTIGGGFADMFGGGFFTAQHGWNEGFIYMLLALVVAVAMK*
Ga0114964_1020149023300010157Freshwater LakeMSTFKKWLLLVIVTVALFHTVGGVFADMLGGGTSLFSPAHGWNEGLIYMILALVVAIAIK
Ga0114967_1040577923300010160Freshwater LakeMSTFKKWLLIVIVTIALLHTVGGGFADMFGSPFFSPAHGWNEGLIYMLLALVVAITVK*
Ga0114967_1061494523300010160Freshwater LakeLLIVIVTIALLHTVGGGFADMFGSPFFSPAHGWNEGLIYMLLALVVAIAVK*
Ga0151516_10099303300011116FreshwaterMSTFKKWLLLAIVTVALFHTFGGSLADIFGGGTSLFSPAHGWNEGLIYMLLAIVVAIAVK
Ga0151516_10157203300011116FreshwaterMSEFKKWLLIMIVIIALLHTVGGGFADMFGGTFFTAQHGWNEGFIYMLLALVVAVALK*
Ga0151516_1093463300011116FreshwaterMSTFKKWLLIVIVTIALLHTVGGGFADMFGSSFFSAAHGWNEGLIYMLLALVVAIAVK*
Ga0119951_105456123300012000FreshwaterMSTFKKWLLIVIVTIALLHTVGGGFADMFGSPFFSPAHGWNEGLIYMLLALVVAIAVK*
Ga0157210_100261363300012665FreshwaterMSTFKKWLLVIIVVIALIHTVAGGFADMFGGMFFTAAHGWNEGLIYMLLAVVVAIALK*
Ga0164292_1046677633300013005FreshwaterMSTFKKWLLSIIVVIALIHTIGGGFANMFGPILYPFTAEHGWNEGLIFMILAVVVAIAVK
Ga0164294_1004086063300013006FreshwaterMSTFKKWLLIIIVVIALLHTVGGGFADMFGAGFFSAQHGWNEGFIYMLLALVVAVAMK*
Ga0207193_1001119303300020048Freshwater Lake SedimentMSTFKKWLLLVIVAIALFHAVGGGFADMFGGGTSLFSPAHGWNEGVIYMLLAIVVAIAVK
Ga0207193_101882683300020048Freshwater Lake SedimentMSTFKKWLLIIIVIIALLHTIGGGFADMFGAGFFTAQHGWNEGFIYMLLALVIAVALK
Ga0211729_1063107823300020172FreshwaterMSILKKWLLIIIVVIALLHTVGGGFADMFGGTFFTAQHGWNEGFIYMLLALVVAVAMK
Ga0211729_10894284103300020172FreshwaterMSTFKKWLLIIIVVIALLHTVGGGFADMFGGGFFTAQHGWNEGFIYMLLALVVSIALK
Ga0211731_1127330743300020205FreshwaterMSTFKAWLLAIIVTIALFHTFGGSLADIFGGGTSLFTPAHGWNEGLIYMLLAIVVAIAVK
Ga0207909_104116213300020572FreshwaterMSTFKKWLLIVIVGIALLHTMGGGFSDMLGLSFFSPAHGWNEGLIFMLLAVVVAIAVK
Ga0214227_101238223300020703FreshwaterMSTLKKWLLFLIVAVALFHTVGGSFADVFGGGTSLFTPAHGWNEGLIYMLLALVVAVAMK
Ga0214206_102269623300021131FreshwaterMSTFKKWLLIVIVTIALLHTVGGGFADMFGLSFFSPAHGWNEGLIYMLLAVVVAIAVK
Ga0194048_1013888323300021519Anoxic Zone FreshwaterMSTFKKWLLIVIVTIALLHTVGGGFADMFGSPFFSPAHGWNEGLIYMLLALVVAIAVK
Ga0214921_10005364163300023174FreshwaterMSTFKKWLLSIIVVIALIHTIGGGFANMFGPILYPFTAAHGWNEGLIFMILALVVAIAVK
Ga0214921_10012248103300023174FreshwaterMSTFKKWLLIVIVAIALLHTIGGGFSDMFGLPFFSAAHGWNEGLIYMLLALVVAIALK
Ga0214921_1009607753300023174FreshwaterMSTFKKWLLSIIVVIALIHTIGGGFANMFGPILYPFTAEHGWNEGLIFMILALVVAIAVK
Ga0214919_10002709213300023184FreshwaterMSTFKKWLLLVIVAVALVHTFAGGFADILGGTVSFSAAHGWNEGLIYMLLAVVVAIAVK
Ga0214919_10003288133300023184FreshwaterMSTFKKWLLLVIVAIALLHSFGGSLADVFGGGFTSAHGWNEAVIYMLLAIVVAIAVK
Ga0208738_100328763300025379FreshwaterMSTFKKWLLLVIVAVALFHTFAGGAADLLGGTVTFSAAHGWNEGLIYMLLAVVVAIAVK
Ga0208381_102153913300025405FreshwaterKEMSTFKKWLLLVIVAVALFHTFAGGAADLLGGTVTFSAAHGWNEGLIYMLLAVVVAIAV
Ga0208253_105896723300025418FreshwaterMSTFKKWLLLVIVVVALFHTFAGDVADLLGGTVTFSAAHGWNEGLIYMLLAVVVAIAVK
Ga0207958_102150743300025421FreshwaterRNFPVCRKMSTLKKWLLFLIVAVALFHTVGGSFADVFGGGTSMFTPAHGWNEGLIYMLLALVVAVAMK
Ga0208105_100959813300025487FreshwaterFPVCRKMSTLKKWLLFLIVAVALFHTVGGSFADVFGGGTSMFTPAHGWNEGLIYMLLALVVAVAMK
Ga0207954_115029013300025606FreshwaterCRKMSTLKKWLLFLIVAVALFHTVGGSFADVFGGGTSLFTPAHGWNEGLIYMLLALVVAVAMK
Ga0208867_104977913300025782FreshwaterMSTFKKWLLLVIVVVALFHTFAGDVADLLGGTVTFSAAHGWNEGLIYMLLAVVVA
Ga0208498_100717153300025785FreshwaterMSTFKKWLLLVIVAVALFHTFAGGAADLLGGTVTFSAAHGWNEGLIYMLLAVVVAIA
Ga0255074_103782523300027121FreshwaterMSTFKKWLLIIIIVIALLHTIGGGFADMFGAGFFTAQHGWNEGFIYMLLALVVAVAMK
Ga0255064_102317713300027138FreshwaterMSTFKKWLLIIIVVIALLHTIGGGFADMFGGGFFTAQHGWNEGFIYMLLALVVAVAMK
Ga0255072_110929213300027508FreshwaterMSTFKKWLLIIIVVIALLHTIGGGFADMFGGGFFTAQHGWNEGFIYMLLALVVSIA
Ga0209188_1000390213300027708Freshwater LakeMTTFKKWLLLVIVGIALLHTVAGGFADMFGLSFFSPAHGWNEGIIFMLLAVVVAIAVK
Ga0209599_10000060503300027710Deep SubsurfaceMYKNWLLIIIIVIALLHTIGGGFADMFGGGFFTAQHGWNEGLIYMLLALVVAVAMK
Ga0209297_102915043300027733Freshwater LakeMSTFKKWLLIVIVTIALLHTVGGGFADMFGSPFFSPAHGWNEGLIYMMLALVVAIAVK
Ga0209190_101712763300027736Freshwater LakeMSTFKKWLLIVIVTIALLHTVGGGFADMFGSPFFSPAHGWNEGLIYMLLALVVAIAIK
Ga0209085_100964453300027741Freshwater LakeMSTFKKWLLLVIVVVALLHTVGGGFADMFGSSFFSAAHGWNEGLIYMLLALVVAIAVK
Ga0209084_101147053300027749Freshwater LakeMSTFKKWLLLVIVGIALLHTVGGGFSDMFGLSFFSAAHGWNEGLIYMLLALVVAIAVK
Ga0209596_101127673300027754Freshwater LakeMSTFKKWLLIVIVIIALLHTVGGGFADMFGSPFFSPAHGWNEGLIYMLLALVVAIAVK
Ga0209596_129830323300027754Freshwater LakeMSTFKKWLLLVIVGIALLHTAAGGLADIFGRGTSLFSPAHGWNDGLIFMLLAVVVAIAVK
Ga0209296_133318923300027759Freshwater LakeMYKNWLLIIIIVIALLHTIGGGLADMFGGGFFTAQHGWNEGLIYMLLALVVAIAMK
Ga0209296_133416523300027759Freshwater LakeMSTFKKWLLLAVVAVALFHTFGGSLADVFGGGTSLFTPAHGWNEGLIYM
Ga0209598_1008266243300027760Freshwater LakeMSTFKKWLLTIIVVIALIHTIGGGFANMFGPILYPFTAEHGWNEGLIFMILALVVAIAIK
Ga0209088_100000191333300027763Freshwater LakeMSTFKKWLLLVIVAIALFHAVGGGFADMFGGGTSLFSAAHGWNEGVIYMLLAIVVAIAVK
Ga0209770_1021568733300027769Freshwater LakeMSTFKKWLLIIIVVIALLHTVGGGFADMFGAGFFTAQHGWNEGFIYMLLALVVAIALK
Ga0209550_1072408513300027892Freshwater LakeMSTFKKWLLIIIVVIALLHTIGGGFADMFGAGFFTAQHGWNEGFIYMLLALVVAIALK
Ga0209191_117260043300027969Freshwater LakeMSTFKKWLLLAVVAVALFHTFGGSLADVFGGGTSLFTPAHGWNEGLIYMLLAIVVAIA
Ga0209401_120029723300027971Freshwater LakeMSTFKKWLLIIIVIIALLHTIGGGFADMFGGGFFTAQHGWNEGFIYMLLALVVAVAMK
Ga0247723_101237983300028025Deep Subsurface SedimentMSTFKKWLLSIIVVIALIHTIGGGFANMFGAILYPFTAAHGWNEGLIFMILALVVAIAL
Ga0304728_108599223300028393Freshwater LakeMSTFKKWLLLVIVAVALFHTFAGGVADLLGGAVTFSAAHGWNEGLIYMLLAVVVAIAVK
Ga0335037_0000053_62441_626233300034107FreshwaterMSPFKKWLLSIIVVIALIHTIGGGFANMFGPILYPFTAAHGWNEGLIFMILALVVAIALK
Ga0335068_0483639_400_5763300034116FreshwaterTFKKWLLLAVVAVALFHTFGGSLADLFGGGTSLFTPAHGWNEGLIYMLLAIVVAIAVK
Ga0335033_0083117_23_2053300034117FreshwaterMSTFKKWLLSIIVVIALIHTIGGGFANMFGPILYPFTAAHGWNEGLIFMILALVVAIALK
Ga0335033_0304010_521_6973300034117FreshwaterMSTFKKWLLIIIVIIALLHTIGGGFADMFGGTFFTAQHGWNEGFIYMLLALVVAVAVK
Ga0335017_0369305_620_7843300034167FreshwaterMSTFKKWLLIIIVIIALLHTIGGGFADMFGGTFFTAQHGWNEGFIYMLLALVVAV
Ga0335049_0096308_1148_13303300034272FreshwaterMSTFKKWLLLAIVAVALFHTFGGSLADLFGGGTSLFTPAHGWNEGLIYMLLAIVVAIAVK


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