Basic Information | |
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Family ID | F102548 |
Family Type | Metagenome |
Number of Sequences | 101 |
Average Sequence Length | 58 residues |
Representative Sequence | MSTFKKWLLIVIVTIALLHTVGGGFADMFGSSFFSAAHGWNEGLIYMLLALVVAIAVK |
Number of Associated Samples | 68 |
Number of Associated Scaffolds | 101 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 70.30 % |
% of genes near scaffold ends (potentially truncated) | 18.81 % |
% of genes from short scaffolds (< 2000 bps) | 57.43 % |
Associated GOLD sequencing projects | 60 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.66 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (92.079 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake (29.703 % of family members) |
Environment Ontology (ENVO) | Unclassified (82.178 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) (85.149 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 55.81% β-sheet: 0.00% Coil/Unstructured: 44.19% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.66 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Freshwater Freshwater Freshwater Lake Freshwater Lentic Freshwater Freshwater Anoxic Zone Freshwater Freshwater Lake Freshwater Freshwater Lake Sediment Freshwater Freshwater Estuarine Deep Subsurface Deep Subsurface Sediment Estuary |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
B570J40625_1000622131 | 3300002835 | Freshwater | MSTFKKWLLLAIVTVALFHTVGGSLADILGGGTSLFSPAHGWNEGLIYMLLAIVVAIAVK |
B570J40625_1016704751 | 3300002835 | Freshwater | MSTFKKWLLIVIVGIALLHTMGGGFSDMLGLSFFSPAHGWNEGLIFMLLAVVVAIAVK* |
B570J40625_1017046302 | 3300002835 | Freshwater | MSTFKKWLLLAIVAVALFHTFGGSLADVFGGGTSLFTPAHGWNEGLIYMLLAIVVAIAVK |
G310J44882_100022365 | 3300002933 | Freshwater | MSTLKKWLLFLIVAVALFHTVGGSFADVFGGGTSXFTPAHGWNEGLIYMLLALVVAVAMK |
Ga0007847_1056063 | 3300003793 | Freshwater | MSTLKKWLLFLIVAVALFHTVGGSFADVFGGGTSMFTPAHGWNEGLIYMLLALVVAVA |
Ga0007865_10039204 | 3300003796 | Freshwater | MSTFKKWLLLVIVAVALFHTFAGGAADLLGGTVTFSAAHGWNEGLIYMLLAVVVAIAVK* |
Ga0007840_10135182 | 3300003802 | Freshwater | MSTLKKWLLFLIVAVALFHTVGGSFADVFGGGTSMFTPAHGWNEGLIYMLLALVVAVAMK |
Ga0007787_102959713 | 3300004240 | Freshwater Lake | MSTFKKWLLIIIIVIALLHTVGGGFADMFGGTFFTAQHGWNEGLIFMILALVV |
Ga0007787_105458802 | 3300004240 | Freshwater Lake | MSTFKKWLLIIIVVIALLHTIGGGFADMFGAGFFTAQHGWNEGFIYMLLALVVAVAMK* |
Ga0049082_101442283 | 3300005584 | Freshwater Lentic | MSTFKKWLLIIIIVIALLHTIGGGFADMFGAGFFTAQHGWNEGFIYMLLALVVAVAMK* |
Ga0078894_101642313 | 3300005662 | Freshwater Lake | MSTFKKWLLIIIVIIALLHTIGGGFADMFGAGFFTAQHGWNEGFIYMLLALVIAVALK* |
Ga0078894_101765135 | 3300005662 | Freshwater Lake | MSTFKKWLLIIIVVIALLHTIGGGFADMFGAGFFTAQHGWNEGFIYMLLALVVAIAIK* |
Ga0078894_102987514 | 3300005662 | Freshwater Lake | MSTFKKWLLIIIVAIALIHTIGGGFADMFGPLVYPFSSAHGWNEGLIFMILALVVSIALK |
Ga0078894_103090641 | 3300005662 | Freshwater Lake | MSTFKKWLLIIIVVIALLHTVGGGFADMFGGMFFTASHGWNEGLIYMLLALVVAIALK* |
Ga0078894_103633972 | 3300005662 | Freshwater Lake | MSTFKKWLLIIIVVIALIHTVGGGFADMFGPFVYPFSSAHGWNEGLNFMILALVVAIALK |
Ga0078894_103805022 | 3300005662 | Freshwater Lake | MSTFKKWLLIIIIVIALLHTVGGGFADMFGGMFFTASHGWNEGLIYMLLALVVAIAVK* |
Ga0078894_104252761 | 3300005662 | Freshwater Lake | IVVIALIHTVGGGFADMFGPLVYPFSSAHGWNEGLIFMILALVVAIALK* |
Ga0078894_107915302 | 3300005662 | Freshwater Lake | MSTFKKWLLIIIIVIALIHTIGGGFADMFGPIMYPFSSAHGWNEGLIFMILALVVSIALK |
Ga0078894_108666383 | 3300005662 | Freshwater Lake | MSTFKKWLLIIIISIALLHTIGGGFADMFGGGFFTAQHGWNEGFIYMLLALVVSIALK* |
Ga0078894_108977393 | 3300005662 | Freshwater Lake | MSTFKKWLLLAVIAVALFHTFGGSLADVFGRGTSLFTPAHGWNEGLIYMLLAI |
Ga0078894_111132432 | 3300005662 | Freshwater Lake | MSTFKKWLLIIIIVIALLHTVGGGFADMFGGTFFTAQHGWNEGLIFMILALVVAIAVK* |
Ga0078894_112322032 | 3300005662 | Freshwater Lake | MSTFKKWLLIIIIVIALLHTIGGGFADMFGAGFFTAQHGWNEGFIYMLLALVVAIAVK* |
Ga0078894_113501502 | 3300005662 | Freshwater Lake | MSTFKKWLLIIIVVIALLHTIGGGFADMFGGTFFTAQHGWNEGFIYMLLALVVAVAVK* |
Ga0007807_10064421 | 3300006116 | Freshwater | MSTFKKWLLLVIVVVALFHTFAGDVADLLGGTVTFSAAHGWNEGLIYMLLAVVVAIAVK* |
Ga0102859_11712912 | 3300007708 | Estuarine | MSTFKKWLLIIIVVIALIHTVGGGFADMFGGRFFSAEHGWNEGLIYMLLALVVAIALK* |
Ga0108970_107614522 | 3300008055 | Estuary | MSTFKKWLLIIIIVIALLHTIGGGFADMFGGGFFTAQHGWNEGFIYMLLALVVAVAMK* |
Ga0108970_116100662 | 3300008055 | Estuary | IIVVIALIHTVGGGFADMFGPFVYPFSSAHGWNEGLIFMILALVVSIALK* |
Ga0114973_100257414 | 3300009068 | Freshwater Lake | MSTFKKWLLIVIVIIALLHTVGGGFADMFGSPFFSPAHGWNEGLIYMLLALVVAIAVK* |
Ga0114973_101894343 | 3300009068 | Freshwater Lake | MSTFKKWLLIIIVIIALLHTIGGGFADMFGGGFFTAQHGWNEGFIYMLLALVVAVAMK* |
Ga0114962_1000227212 | 3300009151 | Freshwater Lake | MSTFKKWLLLVIVGIALLHTVGGGFSDMFGLSFFSAAHGWNEGLIYMLLALVVAIAVK* |
Ga0114962_100966984 | 3300009151 | Freshwater Lake | MSTFKKWLLLVIVTVALFHTVGGGFADMLGGGTSLFSPAHGWNEGLIYMILALVVAIAIK |
Ga0114962_104915233 | 3300009151 | Freshwater Lake | TFKKWLLLVIVGIALLHTVAGGFADMFGLSFFSPAHGWNEGIIFMLLAVVVAIAVK* |
Ga0114980_1000018420 | 3300009152 | Freshwater Lake | MSTFKKWLLIVIVTIALLHTVGGGFADMFGSPFFSPAHGWNEGLIYMMLALVVAIAVK* |
Ga0114980_100025402 | 3300009152 | Freshwater Lake | MYKNWLLIIIIVIALLHTIGGGLADMFGGGFFTAQHGWNEGLIYMLLALVVAIAMK* |
Ga0114963_100453996 | 3300009154 | Freshwater Lake | MSTFKKWLLLVIVVVALLHTVGGGFADMFGSSFFSAAHGWNEGLIYMLLALVVAIAVK* |
Ga0114978_100015063 | 3300009159 | Freshwater Lake | MSTFKKWLLLVIVAIALLHSFGGSLADVFGGGFTSAHGWNEAVIYMLLAIVVAIAVK* |
Ga0114970_100979963 | 3300009163 | Freshwater Lake | MSTFKKWLLIVIMIIALLHTVGGGFADMFGSPFFSPAHGWNEGLIYMLLALVVAIAVK* |
Ga0114975_100438604 | 3300009164 | Freshwater Lake | MSTFKKWLLLAVVAVALFHTFGGSLADVFGGGTSLFTPAHGWNEGLIYMLLAIVVAIAVK |
Ga0114959_1000033324 | 3300009182 | Freshwater Lake | MTTFKKWLLLVIVGIALLHTVAGGFADMFGLSFFSPAHGWNEGIIFMLLAVVVAIAVK* |
Ga0114959_100065938 | 3300009182 | Freshwater Lake | MSTFKKWLLLVIVAVALFHTFAGGVADLLGGAVTFSAAHGWNEGLIYMLLAVVVAIAVK* |
Ga0114982_10006846 | 3300009419 | Deep Subsurface | MYKNWLLIIIIVIALLHTIGGGFADMFGGGFFTAQHGWNEGLIYMLLALVVAVAMK* |
Ga0114982_10176663 | 3300009419 | Deep Subsurface | MSTFKKWLLIIIVVIALLHTIGGGFADMFGGGFFTAQHGWNEGFIYMLLALVVAVAMK* |
Ga0114964_102014902 | 3300010157 | Freshwater Lake | MSTFKKWLLLVIVTVALFHTVGGVFADMLGGGTSLFSPAHGWNEGLIYMILALVVAIAIK |
Ga0114967_104057792 | 3300010160 | Freshwater Lake | MSTFKKWLLIVIVTIALLHTVGGGFADMFGSPFFSPAHGWNEGLIYMLLALVVAITVK* |
Ga0114967_106149452 | 3300010160 | Freshwater Lake | LLIVIVTIALLHTVGGGFADMFGSPFFSPAHGWNEGLIYMLLALVVAIAVK* |
Ga0151516_1009930 | 3300011116 | Freshwater | MSTFKKWLLLAIVTVALFHTFGGSLADIFGGGTSLFSPAHGWNEGLIYMLLAIVVAIAVK |
Ga0151516_1015720 | 3300011116 | Freshwater | MSEFKKWLLIMIVIIALLHTVGGGFADMFGGTFFTAQHGWNEGFIYMLLALVVAVALK* |
Ga0151516_109346 | 3300011116 | Freshwater | MSTFKKWLLIVIVTIALLHTVGGGFADMFGSSFFSAAHGWNEGLIYMLLALVVAIAVK* |
Ga0119951_10545612 | 3300012000 | Freshwater | MSTFKKWLLIVIVTIALLHTVGGGFADMFGSPFFSPAHGWNEGLIYMLLALVVAIAVK* |
Ga0157210_10026136 | 3300012665 | Freshwater | MSTFKKWLLVIIVVIALIHTVAGGFADMFGGMFFTAAHGWNEGLIYMLLAVVVAIALK* |
Ga0164292_104667763 | 3300013005 | Freshwater | MSTFKKWLLSIIVVIALIHTIGGGFANMFGPILYPFTAEHGWNEGLIFMILAVVVAIAVK |
Ga0164294_100408606 | 3300013006 | Freshwater | MSTFKKWLLIIIVVIALLHTVGGGFADMFGAGFFSAQHGWNEGFIYMLLALVVAVAMK* |
Ga0207193_100111930 | 3300020048 | Freshwater Lake Sediment | MSTFKKWLLLVIVAIALFHAVGGGFADMFGGGTSLFSPAHGWNEGVIYMLLAIVVAIAVK |
Ga0207193_10188268 | 3300020048 | Freshwater Lake Sediment | MSTFKKWLLIIIVIIALLHTIGGGFADMFGAGFFTAQHGWNEGFIYMLLALVIAVALK |
Ga0211729_106310782 | 3300020172 | Freshwater | MSILKKWLLIIIVVIALLHTVGGGFADMFGGTFFTAQHGWNEGFIYMLLALVVAVAMK |
Ga0211729_1089428410 | 3300020172 | Freshwater | MSTFKKWLLIIIVVIALLHTVGGGFADMFGGGFFTAQHGWNEGFIYMLLALVVSIALK |
Ga0211731_112733074 | 3300020205 | Freshwater | MSTFKAWLLAIIVTIALFHTFGGSLADIFGGGTSLFTPAHGWNEGLIYMLLAIVVAIAVK |
Ga0207909_10411621 | 3300020572 | Freshwater | MSTFKKWLLIVIVGIALLHTMGGGFSDMLGLSFFSPAHGWNEGLIFMLLAVVVAIAVK |
Ga0214227_10123822 | 3300020703 | Freshwater | MSTLKKWLLFLIVAVALFHTVGGSFADVFGGGTSLFTPAHGWNEGLIYMLLALVVAVAMK |
Ga0214206_10226962 | 3300021131 | Freshwater | MSTFKKWLLIVIVTIALLHTVGGGFADMFGLSFFSPAHGWNEGLIYMLLAVVVAIAVK |
Ga0194048_101388832 | 3300021519 | Anoxic Zone Freshwater | MSTFKKWLLIVIVTIALLHTVGGGFADMFGSPFFSPAHGWNEGLIYMLLALVVAIAVK |
Ga0214921_1000536416 | 3300023174 | Freshwater | MSTFKKWLLSIIVVIALIHTIGGGFANMFGPILYPFTAAHGWNEGLIFMILALVVAIAVK |
Ga0214921_1001224810 | 3300023174 | Freshwater | MSTFKKWLLIVIVAIALLHTIGGGFSDMFGLPFFSAAHGWNEGLIYMLLALVVAIALK |
Ga0214921_100960775 | 3300023174 | Freshwater | MSTFKKWLLSIIVVIALIHTIGGGFANMFGPILYPFTAEHGWNEGLIFMILALVVAIAVK |
Ga0214919_1000270921 | 3300023184 | Freshwater | MSTFKKWLLLVIVAVALVHTFAGGFADILGGTVSFSAAHGWNEGLIYMLLAVVVAIAVK |
Ga0214919_1000328813 | 3300023184 | Freshwater | MSTFKKWLLLVIVAIALLHSFGGSLADVFGGGFTSAHGWNEAVIYMLLAIVVAIAVK |
Ga0208738_10032876 | 3300025379 | Freshwater | MSTFKKWLLLVIVAVALFHTFAGGAADLLGGTVTFSAAHGWNEGLIYMLLAVVVAIAVK |
Ga0208381_10215391 | 3300025405 | Freshwater | KEMSTFKKWLLLVIVAVALFHTFAGGAADLLGGTVTFSAAHGWNEGLIYMLLAVVVAIAV |
Ga0208253_10589672 | 3300025418 | Freshwater | MSTFKKWLLLVIVVVALFHTFAGDVADLLGGTVTFSAAHGWNEGLIYMLLAVVVAIAVK |
Ga0207958_10215074 | 3300025421 | Freshwater | RNFPVCRKMSTLKKWLLFLIVAVALFHTVGGSFADVFGGGTSMFTPAHGWNEGLIYMLLALVVAVAMK |
Ga0208105_10095981 | 3300025487 | Freshwater | FPVCRKMSTLKKWLLFLIVAVALFHTVGGSFADVFGGGTSMFTPAHGWNEGLIYMLLALVVAVAMK |
Ga0207954_11502901 | 3300025606 | Freshwater | CRKMSTLKKWLLFLIVAVALFHTVGGSFADVFGGGTSLFTPAHGWNEGLIYMLLALVVAVAMK |
Ga0208867_10497791 | 3300025782 | Freshwater | MSTFKKWLLLVIVVVALFHTFAGDVADLLGGTVTFSAAHGWNEGLIYMLLAVVVA |
Ga0208498_10071715 | 3300025785 | Freshwater | MSTFKKWLLLVIVAVALFHTFAGGAADLLGGTVTFSAAHGWNEGLIYMLLAVVVAIA |
Ga0255074_10378252 | 3300027121 | Freshwater | MSTFKKWLLIIIIVIALLHTIGGGFADMFGAGFFTAQHGWNEGFIYMLLALVVAVAMK |
Ga0255064_10231771 | 3300027138 | Freshwater | MSTFKKWLLIIIVVIALLHTIGGGFADMFGGGFFTAQHGWNEGFIYMLLALVVAVAMK |
Ga0255072_11092921 | 3300027508 | Freshwater | MSTFKKWLLIIIVVIALLHTIGGGFADMFGGGFFTAQHGWNEGFIYMLLALVVSIA |
Ga0209188_100039021 | 3300027708 | Freshwater Lake | MTTFKKWLLLVIVGIALLHTVAGGFADMFGLSFFSPAHGWNEGIIFMLLAVVVAIAVK |
Ga0209599_1000006050 | 3300027710 | Deep Subsurface | MYKNWLLIIIIVIALLHTIGGGFADMFGGGFFTAQHGWNEGLIYMLLALVVAVAMK |
Ga0209297_10291504 | 3300027733 | Freshwater Lake | MSTFKKWLLIVIVTIALLHTVGGGFADMFGSPFFSPAHGWNEGLIYMMLALVVAIAVK |
Ga0209190_10171276 | 3300027736 | Freshwater Lake | MSTFKKWLLIVIVTIALLHTVGGGFADMFGSPFFSPAHGWNEGLIYMLLALVVAIAIK |
Ga0209085_10096445 | 3300027741 | Freshwater Lake | MSTFKKWLLLVIVVVALLHTVGGGFADMFGSSFFSAAHGWNEGLIYMLLALVVAIAVK |
Ga0209084_10114705 | 3300027749 | Freshwater Lake | MSTFKKWLLLVIVGIALLHTVGGGFSDMFGLSFFSAAHGWNEGLIYMLLALVVAIAVK |
Ga0209596_10112767 | 3300027754 | Freshwater Lake | MSTFKKWLLIVIVIIALLHTVGGGFADMFGSPFFSPAHGWNEGLIYMLLALVVAIAVK |
Ga0209596_12983032 | 3300027754 | Freshwater Lake | MSTFKKWLLLVIVGIALLHTAAGGLADIFGRGTSLFSPAHGWNDGLIFMLLAVVVAIAVK |
Ga0209296_13331892 | 3300027759 | Freshwater Lake | MYKNWLLIIIIVIALLHTIGGGLADMFGGGFFTAQHGWNEGLIYMLLALVVAIAMK |
Ga0209296_13341652 | 3300027759 | Freshwater Lake | MSTFKKWLLLAVVAVALFHTFGGSLADVFGGGTSLFTPAHGWNEGLIYM |
Ga0209598_100826624 | 3300027760 | Freshwater Lake | MSTFKKWLLTIIVVIALIHTIGGGFANMFGPILYPFTAEHGWNEGLIFMILALVVAIAIK |
Ga0209088_10000019133 | 3300027763 | Freshwater Lake | MSTFKKWLLLVIVAIALFHAVGGGFADMFGGGTSLFSAAHGWNEGVIYMLLAIVVAIAVK |
Ga0209770_102156873 | 3300027769 | Freshwater Lake | MSTFKKWLLIIIVVIALLHTVGGGFADMFGAGFFTAQHGWNEGFIYMLLALVVAIALK |
Ga0209550_107240851 | 3300027892 | Freshwater Lake | MSTFKKWLLIIIVVIALLHTIGGGFADMFGAGFFTAQHGWNEGFIYMLLALVVAIALK |
Ga0209191_11726004 | 3300027969 | Freshwater Lake | MSTFKKWLLLAVVAVALFHTFGGSLADVFGGGTSLFTPAHGWNEGLIYMLLAIVVAIA |
Ga0209401_12002972 | 3300027971 | Freshwater Lake | MSTFKKWLLIIIVIIALLHTIGGGFADMFGGGFFTAQHGWNEGFIYMLLALVVAVAMK |
Ga0247723_10123798 | 3300028025 | Deep Subsurface Sediment | MSTFKKWLLSIIVVIALIHTIGGGFANMFGAILYPFTAAHGWNEGLIFMILALVVAIAL |
Ga0304728_10859922 | 3300028393 | Freshwater Lake | MSTFKKWLLLVIVAVALFHTFAGGVADLLGGAVTFSAAHGWNEGLIYMLLAVVVAIAVK |
Ga0335037_0000053_62441_62623 | 3300034107 | Freshwater | MSPFKKWLLSIIVVIALIHTIGGGFANMFGPILYPFTAAHGWNEGLIFMILALVVAIALK |
Ga0335068_0483639_400_576 | 3300034116 | Freshwater | TFKKWLLLAVVAVALFHTFGGSLADLFGGGTSLFTPAHGWNEGLIYMLLAIVVAIAVK |
Ga0335033_0083117_23_205 | 3300034117 | Freshwater | MSTFKKWLLSIIVVIALIHTIGGGFANMFGPILYPFTAAHGWNEGLIFMILALVVAIALK |
Ga0335033_0304010_521_697 | 3300034117 | Freshwater | MSTFKKWLLIIIVIIALLHTIGGGFADMFGGTFFTAQHGWNEGFIYMLLALVVAVAVK |
Ga0335017_0369305_620_784 | 3300034167 | Freshwater | MSTFKKWLLIIIVIIALLHTIGGGFADMFGGTFFTAQHGWNEGFIYMLLALVVAV |
Ga0335049_0096308_1148_1330 | 3300034272 | Freshwater | MSTFKKWLLLAIVAVALFHTFGGSLADLFGGGTSLFTPAHGWNEGLIYMLLAIVVAIAVK |
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