Basic Information | |
---|---|
Family ID | F102270 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 101 |
Average Sequence Length | 56 residues |
Representative Sequence | ETYLVTRVYTEALSTIVVLRKSGAEEESQMRVKVERTSDGQNIPGFAPAMEDDSF |
Number of Associated Samples | 79 |
Number of Associated Scaffolds | 101 |
Quality Assessment | |
---|---|
Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 13.00 % |
% of genes near scaffold ends (potentially truncated) | 82.18 % |
% of genes from short scaffolds (< 2000 bps) | 85.15 % |
Associated GOLD sequencing projects | 77 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.52 |
Hidden Markov Model |
---|
|
Powered by Skylign |
Most Common Taxonomy | |
---|---|
Group | Bacteria (88.119 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
---|---|
GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (24.752 % of family members) |
Environment Ontology (ENVO) | Unclassified (33.663 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (56.436 % of family members) |
⦗Top⦘ |
Full Alignment |
---|
Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76. |
Powered by MSAViewer |
⦗Top⦘ |
Predicted Topology & Secondary Structure | |||||
---|---|---|---|---|---|
Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 0.00% β-sheet: 28.92% Coil/Unstructured: 71.08% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
|||||
Powered by Feature Viewer |
Structure Viewer | |
---|---|
| |
Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.52 |
Powered by PDBe Molstar |
⦗Top⦘ |
⦗Top⦘ |
Visualization |
---|
All Organisms Unclassified |
Powered by ApexCharts |
⦗Top⦘ |
Visualization |
---|
Bog Forest Soil Bog Peatland Freshwater Sediment Soil Watersheds Soil Vadose Zone Soil Tropical Forest Soil Peatlands Soil Arctic Peat Soil Soil Soil Soil Tropical Peatland Bog Forest Soil Bog Tropical Forest Soil Palsa Peat Soil |
Powered by ApexCharts |
⦗Top⦘ |
Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI26341J46601_101094712 | 3300003219 | Bog Forest Soil | LVTRVYNEALSSIAVLRKSGAEGEDLVRVKVERTPEGQGLPGFVPAVDDD* |
Ga0062384_1005827533 | 3300004082 | Bog Forest Soil | MSVSKIQSGQLWKKNESGEIYLVTRVYTEALSTVAMLRKSGAETEPLIRVRVERTARGQNIP |
Ga0062387_1005541032 | 3300004091 | Bog Forest Soil | TMVVLRKSGAEDQSLIRLRVEGTATGQNIPGFTPALDDDAG* |
Ga0062387_1006107481 | 3300004091 | Bog Forest Soil | WKNLESGDTFLVTRVYTEALSTIVVLRKSGAEDQSQLRIKVERTPEGQNIPGFAPAMEDDSV* |
Ga0066388_1058200411 | 3300005332 | Tropical Forest Soil | YTEALSTIVVLRKPGAEDQSLVRVEVERTSGGQNIPGFAPAMDDDSG* |
Ga0075017_1016187202 | 3300006059 | Watersheds | LWKKEDTGDIFLVTRVYSEALSTIVVLRKSGAEEENVTRVKVERTPQGHNLPGFVPAVDDDSV* |
Ga0126373_111783501 | 3300010048 | Tropical Forest Soil | VYTEALSTIVVLRKSGAEEESQMRIKVERTSDGQNIPGFAPAMEDDSF* |
Ga0126373_113978202 | 3300010048 | Tropical Forest Soil | WKRDGTGETYLVTRVYTEALSTIVVLRKSGAEEESQMRIKVERTSDGQNIPGFAPAMEDDSF* |
Ga0126373_115384862 | 3300010048 | Tropical Forest Soil | VLRKSGAEEESQIRLRVERTSEGQNIPGFVPATEDDAF* |
Ga0126373_124194771 | 3300010048 | Tropical Forest Soil | TIVVLRKSGAEEESQMRIKVERTSDGQNIPGFAPAMEDDSF* |
Ga0126373_124782283 | 3300010048 | Tropical Forest Soil | EALSTIVVLRKSGAEEESQMRIKVERTSDGQNIPGFAPAMEDDSF* |
Ga0126373_126816192 | 3300010048 | Tropical Forest Soil | VTRVYTEALSTIVVLRKSGAEEESQMRVKVERTSDGQNIPGFAPAMEDDSF* |
Ga0127503_103582541 | 3300010154 | Soil | LVTRIYTEALSTIALLRKSGAEDQDLIRVRVERNPSGQSLPGFIPAVEDDSI* |
Ga0074046_104474841 | 3300010339 | Bog Forest Soil | YNEALSTIAVLRKSGSENENQLRIKVERTPAGQNLPGFSPAMEDDIV* |
Ga0074045_101682973 | 3300010341 | Bog Forest Soil | MSVRKLQIGQLWKKEDNGEIYLVTRVYSEALSTIAVLRKSGAEEENVTRVKVERTGRGQGLPGFVPAVDDDSM* |
Ga0074045_108302782 | 3300010341 | Bog Forest Soil | EALSTIVVLRKSGSENENQLRIKVERTPTGLTIPGFSPAMEDDIV* |
Ga0074044_101423691 | 3300010343 | Bog Forest Soil | LRKSGAEDEHQIRLKVERTPQGQGIPGFAPAMEDDSQ* |
Ga0126376_120097172 | 3300010359 | Tropical Forest Soil | MANSVSRIQIGQLWKKDETGETYLVTGVYSEALSTVATLRKSGAENEALVRVKVERAAGGQTLPGFSPAQEDDF* |
Ga0126377_126091342 | 3300010362 | Tropical Forest Soil | VTRVYTEALSTIAVLRKSGAEDQHLVRVKVERTPQGQGLPGFVPAVEDD* |
Ga0126381_1039404592 | 3300010376 | Tropical Forest Soil | QIGQLWKNLETGETYLVTRVYTEALSTIVVLRKSGAEDQSQVRVKVERTSGGQNIPGFAPAMDDDSG* |
Ga0126381_1039549732 | 3300010376 | Tropical Forest Soil | QIGQLWKNLETGETYLVTRVYTEALSTIVVLRKSGAEDQSLVRVKVERTSGGQNIPGFAPAMDDDSG* |
Ga0126381_1042397532 | 3300010376 | Tropical Forest Soil | LWKRDGTGETYLVTRVYTEALSTIVVLRKSGAEEESQMRIKVERTSDGQNIPGFVPAMEDDSF* |
Ga0137396_102620854 | 3300012918 | Vadose Zone Soil | WKKKETGDTFLVTRVYHEALSTIVVLRKSGSEGEDLVRVKVERTPQGQGLPGFVPAVEDDTL* |
Ga0137416_103353103 | 3300012927 | Vadose Zone Soil | QIGQLWKKKETGDTFLVTRVYHEALSTIVVLRKSGSEGEDLVRVKVERTPQGQGLPGFVPAVEDDSL* |
Ga0164298_111634441 | 3300012955 | Soil | IQIGQLWKKEASGETYLVTRVYTEALSTIVVLRKSGSEGEALTRVKADRTGGGSALPGFVPAQEDERF* |
Ga0181524_100629864 | 3300014155 | Bog | RKSGSENENQLRIKVERTPDGQNLPGFSPAMEDDIV* |
Ga0182014_104606522 | 3300014491 | Bog | LRKSGAESQSQLRIKIERTPEGQNLPGFKPASVDDSV* |
Ga0181522_103662311 | 3300014657 | Bog | KNDSGEIYLVTRVYTEALSSVAMLRKSGAETEPLIRVRVERTSGGQNIPGFTPAQEDEKF |
Ga0137420_10146171 | 3300015054 | Vadose Zone Soil | IQIGQLWKKKETGDTFLVTRVYHEALSTIVVLRKSGSEGEDLVRVKVERTPQGQGLPGFVPAVEDDTL* |
Ga0182036_109045332 | 3300016270 | Soil | YTEALSTIVVLRKSGAEEESQIRVKVERTSEGQNIPGFVPAMEDDSF |
Ga0182033_121366563 | 3300016319 | Soil | GQLWKKNGTGETYLVTRVYTEALSTIAVLRKSGAEDQNLVRVKVERTAQGQGLPGFVPAVEDD |
Ga0182035_102040891 | 3300016341 | Soil | QLWKKDGTGETYLVTRVYTEALSTIVVLRKSGAEEESQIRLKVERTSEGQNIPGFVPATEDDAF |
Ga0182035_119365341 | 3300016341 | Soil | VYTEALSTIVVLRKSGAEEESQMRVKVERTSDGQNIPGFAPAMEDDSF |
Ga0182037_117804601 | 3300016404 | Soil | YTEALSTIVVLRKSGAEEESQMRVKVERTSDGQNIPGFAPAMEDDSF |
Ga0182039_112312742 | 3300016422 | Soil | VYTEALSTIAVLRRSGAEEESQIRVKVERTSDGQNIPGFAPAMEDDSF |
Ga0187801_100189303 | 3300017933 | Freshwater Sediment | MSVKRIQIGQLWKQLETGETYLVTRVYTEALSTIVVLRKSGAEDQSQLRVKVERTPAGPNIPGFTPAMEDDSV |
Ga0187819_100225333 | 3300017943 | Freshwater Sediment | MSVKRIQIGQLWKKLETGETYLVTRVYTEALSTMVVLRKSGQEDQSQVRVKVERSGAGQNIPGFAPAMEDDSV |
Ga0187819_102031701 | 3300017943 | Freshwater Sediment | LESGETFLVTRVYTEALSTIVVLRKSGAEDQSQLRIKIERTPEGQNIPGFAPAMEDDSV |
Ga0187817_100697692 | 3300017955 | Freshwater Sediment | MTARRIQIGQLWKNLATEETYLVTRVYTEALSTIVVLRKSGAEDQSQIRLKVERTSAGQNIPGFVPAMEDDSV |
Ga0187817_104827971 | 3300017955 | Freshwater Sediment | ESGETFLVTRVYTEALSTIVVLRKSGAEDQSQLRIKIERTPEGQNIPGFAPAMEDDSV |
Ga0187776_100227784 | 3300017966 | Tropical Peatland | LDTGETFLVTRVYPEALSTFVVLRKSGAEDQSQVRVKVERTPAGQNIPGFAPAMEDDSV |
Ga0187783_108334541 | 3300017970 | Tropical Peatland | MSAKKVQIGQLWKNLETGDTFLVTRVYTEALSTIVVLRKSGAEDQQQIRLKVERTPEGQNIPGFMPALQDDTA |
Ga0187781_113836471 | 3300017972 | Tropical Peatland | ETGETYLVTRVYTEALSTIVVLRKSGAEDESQLRLKVERTPAGSTIPGFAPAMDDDAV |
Ga0187816_103401942 | 3300017995 | Freshwater Sediment | LETGETYLVTRVYTEALRTMVILRKSGQEDQSQVRVKVERAGSGQSIPGFAPAMEDDSL |
Ga0187810_102878461 | 3300018012 | Freshwater Sediment | MTARRIQIGQLWKNLATEETYLVTRVYTEALSTIVVLRKSGAEDQSQIRLKIERTSAGQNIPGFVPAMEDDSV |
Ga0187766_102881552 | 3300018058 | Tropical Peatland | GETYLVTRVYTEALSTIAVLRKSGAENQDLVRVKVERTPQGQGLPGFVPAVEDD |
Ga0187772_102424353 | 3300018085 | Tropical Peatland | AVLRKSGAEDQSQLRIKVERRGGIPSIPGFTPAMDEDDSV |
Ga0187771_100413662 | 3300018088 | Tropical Peatland | MSVKRIRIGQLWKKLDSGETYLVTRVYTEALSTIVVLRKSGAEEQSQLRIKVERTNGGQVIPGFALAMEDDNL |
Ga0187771_101047122 | 3300018088 | Tropical Peatland | MASMSVKRIQIGQLWKQLETGETYLVTRVYTEALSTIVVLRKSGAEDQSQLRVKVERTPDGPNIPGFSPAMEDDSI |
Ga0187771_101760223 | 3300018088 | Tropical Peatland | MSVKRIQIGQLWKQLETGETYLVTRVYTEALSTIVVLRKSGAEEQSQLRVKVERTPAGPNIPGFAPAMEDDSV |
Ga0210403_100194462 | 3300020580 | Soil | MSARKLQIGQLWKKKETGDTFLVTRVYTEALSTFVVLRKSGSEGESLVRVKVERTPEGQGLPGFVPAVEDDSV |
Ga0210403_112143501 | 3300020580 | Soil | LWKKAESGETYLVTRVYTEALSTMVVLRKSGAEDENQIRIKVERTGDGQNIPGFHPATDDDSV |
Ga0210385_100142151 | 3300021402 | Soil | RKSGAEDEHQLRIKVERTPQGQNIPGFAPAMDDDSM |
Ga0126371_101810071 | 3300021560 | Tropical Forest Soil | GQLWKNLETGETYLVTRVYTEALSTIVVLRKSGAEDQSQVRVKVERTSGGQNIPGFAPAMDDDSG |
Ga0126371_127330743 | 3300021560 | Tropical Forest Soil | GTGETYLVTRVYTEALSTIVVLRKSGAEEESQMRIKVERTSDGQNIPGFAPAMEDDSF |
Ga0208687_10774011 | 3300025469 | Peatland | KDGTAETYLVTRVYPEALSTIAVLRKSGSENENQLRVKVERTPAGQNLPGFSPAMEDDIV |
Ga0208479_10015723 | 3300025474 | Arctic Peat Soil | MSVRKLQIGQLWKKEDSGEIYLVTRVYSEALSTIAVLRKSGAEEESVTRVKVERTGKGQNLPGFTPAVDDDSV |
Ga0207759_1197812 | 3300026823 | Tropical Forest Soil | VYTEALSTIVVLRKSGAEEESQIRVKVERTSEGQNIPGFVPAMEDDSF |
Ga0207741_10040223 | 3300026941 | Tropical Forest Soil | LVTRVYTEALSTMVVLRKSGAEDQNLVRIKVESTGKGQNIPGFAPAMEDDSV |
Ga0207736_1046541 | 3300027023 | Tropical Forest Soil | RVYTEALSTIVVLRKSGAEEESQIRVKVERTSEGQNIPGFVPAMEDDSF |
Ga0207766_10404791 | 3300027042 | Tropical Forest Soil | RKSGAEEENLVRIKVERTAKGQNLPGFVPAVDDDSV |
Ga0208827_11643302 | 3300027641 | Peatlands Soil | IVVLRKSGAESEHQVRVKVERTPAGQNIPGFSPAMEDDIV |
Ga0209656_103842651 | 3300027812 | Bog Forest Soil | DGTADVFLVTRVYHEALTTIALLRKSGAEGENQVRVKVERSGAGFTLPGFVPALDDDSM |
Ga0209415_107649792 | 3300027905 | Peatlands Soil | MSVRRIQIGQLWKKEDTGETYLVTRIYEEALSTFALLRKSGAEDQDQVRVRVVRTAAGQSLTGFVLAMEDDSI |
Ga0311369_108685231 | 3300029910 | Palsa | GEIYLVTRVYTEALSSVAMLRKSGAETEPLIRVRVERTSGGQNIPGFTPAQEDEKF |
Ga0318516_104409512 | 3300031543 | Soil | TYLVTRVYTEALSTIVVLRKSGAEEESQMRIKVERTSDGQNIPGFAPAMEDDSF |
Ga0318528_101339282 | 3300031561 | Soil | IQIGQLWKRDGTGETYLVTRVYTEALSTIVVLRKSGAEEESQMRIKVERTSDGQNIPGFAPAMEDDSF |
Ga0318555_108017011 | 3300031640 | Soil | YLVTRVYTEALSTIVVLRKSGAEEESQMRIKVERTSDGQNIPGFAPAMEDDSF |
Ga0318542_104770761 | 3300031668 | Soil | VYTEALSTIVVLRKSGAEEESQMRIKVERTSDGQNIPGFAPAMEDDSF |
Ga0318574_103432791 | 3300031680 | Soil | GETFLVTRVYTEALSTMVVLRKSGAEDQNLVRIKIENTGKGQNIPGFAPAMEDDSL |
Ga0306917_102901862 | 3300031719 | Soil | CGARKSGAEEESQMRIKVERTSDGQNIPGFAPAMEDDSF |
Ga0318509_108437612 | 3300031768 | Soil | ALSTIVVLRKSGAEEESQMRIKVERTSDGQNIPGFAPAMEDDSF |
Ga0318546_103671711 | 3300031771 | Soil | LWKKDGTGETYLVTRVYTEALSTIVVLRKSGAEEESQIRLKVERTSEGQNIPGFVPATEDDAF |
Ga0318567_101311561 | 3300031821 | Soil | IVVLRKSGAEEESQMRIKVERTSDGQNIPGFAPAMEDDSF |
Ga0310917_103622742 | 3300031833 | Soil | KRDGTGETYLVTRVYTEALSTIVVLRKSGAEEESQMRIKVERTSDGQNIPGFAPAMEDDS |
Ga0310917_108972911 | 3300031833 | Soil | KRDGTGETYLVTRVYTEALSTIVVLRKSGAEEESQMRVKVERTSDGQNIPGFAPAMEDDS |
Ga0306925_106081802 | 3300031890 | Soil | TIVVLRKSGAEEESQMRIKVERTSDGQNIPGFAPAMEDDSF |
Ga0318551_107338152 | 3300031896 | Soil | DGTGETYLVTRVYTEALSTIVVLRKSGAEEESQMRIKVERTSDGQNIPGFAPAMEDDSF |
Ga0318520_103982392 | 3300031897 | Soil | TIVVLRKSGAEEESQIRVKVERTSEGQNIPGFVPAMEDDSF |
Ga0310913_102571882 | 3300031945 | Soil | LRKSGAEEESQMRIKVERTSDGQNIPGFAPAMEDDSF |
Ga0310913_107124252 | 3300031945 | Soil | ETYLVTRVYTEALSTIVVLRKSGAEEESQMRVKVERTSDGQNIPGFAPAMEDDSF |
Ga0310910_103326641 | 3300031946 | Soil | TEALSTIVVLRKSGAEEESQMRIKVERTSDGQNIPGFAPAMEDDSF |
Ga0310909_114065012 | 3300031947 | Soil | ETYLVTRVYTEALSTIVVLRKSGAEEESQIRVKVERTSEGQNIPGFVPAMEDDPF |
Ga0318531_101117812 | 3300031981 | Soil | LWKRDGTGETYLVTRVYTEALSTIVVLRKSGAEEESQMRIKVERTSDGQNIPGFAPAMEDDSF |
Ga0310911_105406002 | 3300032035 | Soil | KKDGTGETYLVTRVYTEALSTIAVLRKSGAEDQNLVRVKVERTPQGQGLPGFVPAVEDD |
Ga0318559_103027461 | 3300032039 | Soil | LWKKDGTGETYLVTRVYTEALSTIVVLRKSGAEEESQIRVKVERTSEGQNIPGFVPAMEDDSF |
Ga0318532_103603712 | 3300032051 | Soil | AVLRKSGAEEQNQIRVKVERTPEGQNIPGFAPALEDDSV |
Ga0318570_102017312 | 3300032054 | Soil | GETYLVTRVYTEALSTIVVLRKSGAEEESQMRIKVERTSDGQNIPGFAPAMEDDSF |
Ga0318504_104438371 | 3300032063 | Soil | VVLRKSGAEEESQMRIKVERTSDGQNIPGFAPAMEDDSF |
Ga0306924_112282141 | 3300032076 | Soil | STIAVLRKSGAEEQNQIRVKVERTPEGQNIPGFAPALEDDSV |
Ga0306920_1000986896 | 3300032261 | Soil | VTRVYTEALSTIVVLRKSGAEEQSQIRVKVERTSEGQNIPGFVPAMEDDSF |
Ga0306920_1012207942 | 3300032261 | Soil | TGETYLVTRVYTEALSTIVVLRKSGAEEESQMRVKVERTSDGQNIPGFAPAMEDDSF |
Ga0306920_1022456022 | 3300032261 | Soil | RVYTEALSTIAVLRKSGAEDQNLVRVKVERTPQGQGLPGFVPAVEDD |
Ga0335079_110320491 | 3300032783 | Soil | IQIGQLWKKLETGETYLVTRVYTEALSTMVILRKSGQEDQNQVRVKVERAGAGQSIPGFAPAMEDDSL |
Ga0335079_116964462 | 3300032783 | Soil | YLVTRIYTEALSTIALLRKSGAEDQDLIRVRVERTAIGQNLPGFVPAVEDDSI |
Ga0335078_100138594 | 3300032805 | Soil | MSVKRIQIGQLWKKLETGETYLVTRVYTEALSTMVILRKSGQEDQSQVRVKVERAGAGQSIPGFVPAMEDDSL |
Ga0335078_110548641 | 3300032805 | Soil | MSVKRIQIGQLWKKLETGETYLVTRVYTEALSTMVILRKSGQEDQNQIRVKVERAGAGQSIPGFAPAMEDDSL |
Ga0335080_122890131 | 3300032828 | Soil | STMVILRKSGQEDQNQVRVKVERAGAGQSIPGFAPAMEDDSL |
Ga0335076_107343772 | 3300032955 | Soil | VTRVYTEALSTMVILRKSGAEDESQLRLKVERTAEGQNIPGFTPAMEDDSV |
Ga0326728_110634731 | 3300033402 | Peat Soil | YTEALSTIAVLRKSGAEEQSQLRIKVERTPEGQNIPGFAPAMEDDSI |
Ga0326727_101645722 | 3300033405 | Peat Soil | MSVRKLQIGQLWKKEDNGEIYLVTRVYSEALSTIAVLRKSGAEEENVTRVKVERRGKGQGLPGFVPAVDDDSM |
⦗Top⦘ |