Metagenome Family F102128

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F102128
Family Type	Metagenome
Number of Sequences	102
Average Sequence Length	49 residues
Representative Sequence	MTQDRIVERKTVTETSAAPRETVEKDYVTGAPHGDEEAGGAVGGAV
Number of Associated Samples	57
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	85.29 %
Associated GOLD sequencing projects	43
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.13

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (50.980 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil (76.471 % of family members)
Environment Ontology (ENVO)	Unclassified (64.706 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (96.078 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64. 1P1_DRAFT_00592770 2B3_GZOS_CLC_01201390 3Bog_all_C_02056020 4JGI20193J14888_10037891 5JGI20191J14862_10476691 6JGI20177J14857_10071405 7JGI20195J14853_10348351 8JGI20195J14853_10395192 9JGI20179J14886_10070541 10JGI24133J20442_10105211 11JGI24133J20442_10602862 12JGIcombinedJ21911_101059773 13JGIcombinedJ21911_101395322 14JGIcombinedJ21911_101866452 15JGIcombinedJ21913_102851881 16JGIcombinedJ21912_100517811 17JGIcombinedJ21912_100793112 18JGIcombinedJ21912_100987971 19JGIcombinedJ21912_102754012 20JGIcombinedJ21915_100749703 21JGIcombinedJ21915_101552922 22JGIcombinedJ21915_101804621 23JGIcombinedJ21915_101955271 24JGIcombinedJ21915_102024721 25JGIcombinedJ26865_10025821 26JGI24132J36420_100953352 27JGI24130J36418_100990122 28JGI24130J36418_101393192 29JGI24131J36419_101100911 30JGI24135J36437_10060571 31JGI24135J36437_10308091 32JGI24136J36422_101276001 33Ga0066794_101594742 34Ga0075527_100424601 35Ga0075521_100410791 36Ga0075520_11329074 37Ga0075520_11498622 38Ga0075520_11789311 39Ga0075520_14316601 40Ga0066793_102588841 41Ga0066793_108795111 42Ga0105855_13039462 43Ga0182010_103126071 44Ga0182010_103267571 45Ga0182017_102450781 46Ga0182017_109433901 47Ga0182019_109590631 48Ga0182019_109944721 49Ga0182021_110581801 50Ga0182021_112675662 51Ga0182021_122632262 52Ga0182021_133711971 53Ga0182027_121274961 54Ga0256681_117961501 55Ga0208851_10261861 56Ga0208079_10189393 57Ga0208079_10249953 58Ga0208079_10732362 59Ga0208079_10774051 60Ga0208587_10765611 61Ga0208587_10831532 62Ga0208587_10854671 63Ga0207932_10171515 64Ga0207932_11037841 65Ga0207931_10245371 66Ga0208584_10993791 67Ga0208584_11026152 68Ga0208584_11218572 69Ga0208716_10033111 70Ga0207927_10271731 71Ga0209385_11212842 72Ga0209744_10258813 73Ga0209744_11154321 74Ga0209744_11494253 75Ga0209746_11416171 76Ga0209638_10067381 77Ga0209638_10928621 78Ga0209638_11257511 79Ga0209638_11305023 80Ga0209745_10260994 81Ga0209745_10363381 82Ga0209539_10209554 83Ga0209539_13254482 84Ga0209748_12668291 85Ga0209124_100684331 86Ga0209124_102530711 87Ga0209014_100040461 88Ga0209014_100911432 89Ga0209014_101362821 90Ga0209014_101585253 91Ga0209429_100221201 92Ga0209226_101949701 93Ga0209540_100742191 94Ga0209540_101321023 95Ga0209540_102161672 96Ga0209540_102303281 97Ga0209585_101542421 98Ga0302299_103653273 99Ga0311348_114527291 100Ga0311366_106349421 101Ga0265332_104561791 102Ga0370481_0411534_3_122
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64. 1P1_DRAFT_00592770 2JGI20195J14853_10395192 3JGI24133J20442_10105211 4JGIcombinedJ21912_100793112 5JGIcombinedJ21915_100749703 6Ga0066794_101594742 7Ga0066793_102588841 8Ga0182010_103126071 9Ga0182021_133711971 10Ga0208851_10261861 11Ga0209745_10260994
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46 1Bog_all_C_02056020 2JGI20193J14888_10037891 3JGI20195J14853_10348351 4JGI24133J20442_10105211 5JGIcombinedJ21911_101395322 6JGIcombinedJ21915_100749703 7JGIcombinedJ26865_10025821 8JGI24135J36437_10060571 9Ga0075527_100424601 10Ga0066793_102588841 11Ga0182010_103267571 12Ga0182021_133711971 13Ga0182027_121274961 14Ga0208584_11026152 15Ga0208584_11218572 16Ga0209745_10260994 17Ga0209539_13254482 18Ga0209585_101542421 19Ga0302299_103653273 20Ga0311348_114527291 21Ga0265332_104561791
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.13
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.13
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF01566	Nramp	10.78
PF00486	Trans_reg_C	7.84
PF00892	EamA	5.88
PF01406	tRNA-synt_1e	5.88
PF05532	CsbD	3.92
PF04226	Transgly_assoc	1.96
PF09954	DUF2188	1.96
PF01047	MarR	0.98
PF08734	GYD	0.98
PF09594	GT87	0.98

Showing 1 to 10 of 19 entries

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COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG1914	Mn2+ or Fe2+ transporter, NRAMP family	Inorganic ion transport and metabolism [P]	10.78
COG0018	Arginyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	5.88
COG0143	Methionyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	5.88
COG0215	Cysteinyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	5.88
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	3.92
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	1.96
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	0.98
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	0.98
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	0.98
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	0.98

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	50.98 %
Unclassified	root	N/A	49.02 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	50.98 %
Unclassified	root	N/A	49.02 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	50.98 %
Unclassified	root	N/A	49.02 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	5.88 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	21.57 %
Unclassified	root	N/A	49.02 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.94 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	14.71 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.98 %
Unclassified	root	N/A	49.02 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.96 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.98 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.96 %
Unclassified	root	N/A	49.02 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	1.96 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.96 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.98 %
Chloroflexi bacterium RBG_16_69_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_69_14	0.98 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.98 %
Unclassified	root	N/A	49.02 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.98 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.96 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.98 %
Chloroflexi bacterium RBG_16_69_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_69_14	0.98 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.98 %
Rhizobiales bacterium YIM 77505	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium YIM 77505	0.98 %
Unclassified	root	N/A	49.02 %

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090004\|P1_DRAFT_NODE_211005_len_1635_cov_8_777370	Not Available	1685	Open in IMG/M
2124908035\|B3_GZOS_CLC_ConsensusfromContig130544	Not Available	695	Open in IMG/M
2140918008\|ConsensusfromContig255364	Not Available	636	Open in IMG/M
3300001385\|JGI20193J14888_1003789	All Organisms → cellular organisms → Bacteria	3704	Open in IMG/M
3300001394\|JGI20191J14862_1047669	Not Available	567	Open in IMG/M
3300001397\|JGI20177J14857_1007140	All Organisms → cellular organisms → Bacteria	2283	Open in IMG/M
3300001402\|JGI20195J14853_1034835	Not Available	721	Open in IMG/M
3300001402\|JGI20195J14853_1039519	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300001410\|JGI20179J14886_1007054	All Organisms → cellular organisms → Bacteria	975	Open in IMG/M
3300001871\|JGI24133J20442_1010521	All Organisms → cellular organisms → Bacteria	2590	Open in IMG/M

Showing 1 to 10 of 102 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.02%
Host-Associated	Host-Associated	0.98%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	0.98%
Plants	Host-Associated → Plants	0.98%
Terrestrial	Environmental → Terrestrial	98.04%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	0.98%
Peat	Environmental → Terrestrial → Peat	2.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.98%
Soil	Environmental → Terrestrial → Soil	95.10%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	0.98%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.98%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	79.41%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.94%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	15.69%

Habitat	Taxonomy	Distribution
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	79.41%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	14.71%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.94%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	0.98%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	76.47%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	10.78%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	2.94%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.98%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.98%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	1.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.98%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.98%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090004	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Permafrost Layer P1	Environmental	Open in IMG/M
2124908035	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog Site B3	Environmental	Open in IMG/M
2140918008	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog_all	Environmental	Open in IMG/M
3300001385	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 deep-092012	Environmental	Open in IMG/M
3300001394	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210 deep-092012	Environmental	Open in IMG/M
3300001397	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 deep-072012	Environmental	Open in IMG/M
3300001402	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 deep-092012	Environmental	Open in IMG/M
3300001410	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 deep-072012	Environmental	Open in IMG/M
3300001871	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0004-311	Environmental	Open in IMG/M
3300002066	Barrow Graham LP Ref core NGADG0002-211 (Barrow Graham LP Ref core NGADG0002-211,NGADG0004-311, ASSEMBLY_DATE=20131004)	Environmental	Open in IMG/M

Showing 1 to 10 of 57 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
P1_DRAFT_00592770	2088090004	Soil	MTQERIVERKTVTESSPAPRETVEKDYVTGVPHGDEEAGGAVGGAVA
B3_GZOS_CLC_01201390	2124908035	Soil	MTQDRIVERKTVTETSAAPRETVEKDYVTGAPHGDEEAGGAVGGAVA
Bog_all_C_02056020	2140918008	Soil	MTQDRIVERKTVTETSAAPRETVEKDYVTGAPHGDEEAGGAVGGAV
JGI20193J14888_10037891	3300001385	Arctic Peat Soil	MTQERIVERKTVPESSAAPRETVEKDYVAGVPHGDEEAGGAVGGAVGGAVVGAVVG
JGI20191J14862_10476691	3300001394	Arctic Peat Soil	MTQERIVERKTXTEXSPAPXETIEKDYVTGAPHGDEEAGGAVGGAV
JGI20177J14857_10071405	3300001397	Arctic Peat Soil	MTQERIVERKTVPESSAAPRETVEKDYVAGVPHGDEEAGGAVGGAVGGAV
JGI20195J14853_10348351	3300001402	Arctic Peat Soil	MTQERIVERKTVTESSPAPHETIEKDYVTGAPHGDEEAGGAVRGAVAGAVVG
JGI20195J14853_10395192	3300001402	Arctic Peat Soil	MTEDRVIERETVTESSPAPRETVEKDYVAGVPHGDEE
JGI20179J14886_10070541	3300001410	Arctic Peat Soil	MTQERIVERKTVTESSAAPRETVEKDYVAGAPHGDEEAGGAVGGAVGGAVVGAVVG
JGI24133J20442_10105211	3300001871	Arctic Peat Soil	MTEHRVIESETITEDGAEHREALRKDYVSGAPHGDEEAGGAVAGGVAGAVVGAVVGGPVGAVV
JGI24133J20442_10602862	3300001871	Arctic Peat Soil	MTQERNVERKTVTESSAAPRETVEKDYVAGVPHGDEEAGGAV
JGIcombinedJ21911_101059773	3300002066	Arctic Peat Soil	MTQERIVERKTVTESSPAPHETVEKDYVTGVPHGDEEAGGAVGGAVAGAVAGAVVG
JGIcombinedJ21911_101395322	3300002066	Arctic Peat Soil	MTEDRVVEQKTVTDSSPAPRETVEKDYVTGAPHGDEEAGGAVGGAVA
JGIcombinedJ21911_101866452	3300002066	Arctic Peat Soil	MTEDRVVERKTVTESSPAPHETIEKDYVTGAPHGDEEAGGAVG
JGIcombinedJ21913_102851881	3300002068	Arctic Peat Soil	MTEDRVVERKTVTESSPAPHETIEKDYVTGAPHGDEEAGGAVGG
JGIcombinedJ21912_100517811	3300002069	Arctic Peat Soil	MTEDRVVERETVTESSPAPRETVEKDYVTGAPHGDEE
JGIcombinedJ21912_100793112	3300002069	Arctic Peat Soil	MTQERVVEQKTVTETSAAPRETVEKDYVTGAPHGDEEAGGAVGGAVAGAVVGAVVGGPVG
JGIcombinedJ21912_100987971	3300002069	Arctic Peat Soil	MTQDRIVERKTVTESSAAPRETVEKDYVTGVPHGD
JGIcombinedJ21912_102754012	3300002069	Arctic Peat Soil	MTQERIVERKTVPESSAAPRETVEKDYVAGVPHGDEEAGGAVGGAV
JGIcombinedJ21915_100749703	3300002071	Arctic Peat Soil	MTEDRVIEXETVTEQTVEPHETIEKDYVTGAPHGDEEAGGAVGGAVGGAV
JGIcombinedJ21915_101552922	3300002071	Arctic Peat Soil	MTQERIVERKTVTESSAAPRETVEKDYVAGVPHGDEEVGGAV
JGIcombinedJ21915_101804621	3300002071	Arctic Peat Soil	MTQERNVERKTVTETSPAPHETVEKDYVTGAPHGDEEAGGAVGGAVGGAVVGA
JGIcombinedJ21915_101955271	3300002071	Arctic Peat Soil	MTEDRVVERKTVTESSPAPHETIEKDYVTGAPHGDEEAGGAVGGAVGGAV
JGIcombinedJ21915_102024721	3300002071	Arctic Peat Soil	MTQERIVERKTVTESSPAPRETIEKDYVTGAPHGDEEAGGAVGGAVA
JGIcombinedJ26865_10025821	3300002347	Arctic Peat Soil	MTQERIVASETITDDGVERRETLRKDYVQGAQHGDEEAGGAVAVGVAGAVVGAVVGGPVGAVV
JGI24132J36420_100953352	3300002538	Arctic Peat Soil	MTQERIVERKTVTESSAAPRETVEKDYVAGVPHGDEEAGGAVGGAVGGAVVGAVVGGPV
JGI24130J36418_100990122	3300002549	Arctic Peat Soil	MTQERIVERKTVPESSAAPRETVEKDYVAGVPHGDEEAGGAVGG
JGI24130J36418_101393192	3300002549	Arctic Peat Soil	MTQERNVERKTVTESSAAPRETVEKDYVAGVPHGDEEAGGAVGGAVGGAVVGAVVGGP
JGI24131J36419_101100911	3300002550	Arctic Peat Soil	MTQERIVERKTVTESSPAPHETIEKDYVTGAPHGDEEAGGAVGGAV
JGI24135J36437_10060571	3300002551	Arctic Peat Soil	MTERRIVESDITDDGVERRETLRKDYVSGAPHGDEEAGGAVAGGVAGAVVGAVVGGPVGAVV
JGI24135J36437_10308091	3300002551	Arctic Peat Soil	MTQERIVERKTVPESSAAPRETVEKDYVAGVPHGDEEAGG
JGI24136J36422_101276001	3300002569	Arctic Peat Soil	MTEDRVVERKTVTESSPAPHETIEKDYVTGAPHGDEEAGGAVGGAVG
Ga0066794_101594742	3300005947	Soil	MTERRVTESETVTRTGGEPRETVEKDYVTGVPHGDEEAGGAVAG
Ga0075527_100424601	3300006640	Arctic Peat Soil	MTQERIVEQKTVTESSPAPRETVEKDYVTGVPHGDE
Ga0075521_100410791	3300006642	Arctic Peat Soil	MTQERVVEQKTVTETSAAPRETIEKDYVTGAPHGDEEAGGAVGGAVAGAVVGAVVGGPV
Ga0075520_11329074	3300006795	Arctic Peat Soil	MTEDRVVEQKTVTETSSAPRETVEKDYVTGAAHGDEEAGGAVGGAVAGAVVGAVVGGP
Ga0075520_11498622	3300006795	Arctic Peat Soil	MTQERNVERTTVTESSAAPRETVEKDYVAGVPHGDEEAGGAVGGAVGGA
Ga0075520_11789311	3300006795	Arctic Peat Soil	MTQERIVERTTVTETSAAPRETIEKDYVTGAPHGDEEAGGAVGGAVAGAVVGAVVGGP
Ga0075520_14316601	3300006795	Arctic Peat Soil	MTQERIVERKTVTESSAAPRETVEKDYVAGVPHGDEEAGGAVGG
Ga0066793_102588841	3300009029	Prmafrost Soil	MTEHRIIERETVTEQAVEPHGTIEKDFATGVPHGDEEAGGAVGGAVGGAIVGAVVGG
Ga0066793_108795111	3300009029	Prmafrost Soil	MTQERIVERKTVTDTSAAPHETIEKDYVTGAPHGDEEAGGAVGGAVGGAVVGA
Ga0105855_13039462	3300009649	Permafrost Soil	MTQERIVERKTVTESSAAPRETVEKDYVTGVPHGDEE
Ga0182010_103126071	3300014490	Fen	MTERIVKTETVTESNAAPHETIEKDYVTGAPHGDEEAGG
Ga0182010_103267571	3300014490	Fen	MTERISKTETVTETSAAPRETVEKDYVTGAPHGDEE
Ga0182017_102450781	3300014494	Fen	MTQDRIVERKTVTETSAAPRETVEKDYVTGAPHGDEEAGGAVGGAVAGAVVGAVVGGPVG
Ga0182017_109433901	3300014494	Fen	MTQDRIVERKTVTETSAAPRETVEKDYVTGAPHGDEEAGGAVGGAVAGAVVGAVVG
Ga0182019_109590631	3300014498	Fen	MTERIVKTETVTEGSAAPRETVEKDYVTGAPHGDEEAGGAVGGAVAGAVVGA
Ga0182019_109944721	3300014498	Fen	MTQERIVERTTVTETSAAPRETIEKDYVTGAPHGDEEAGGAVGGAVAGAVVGAVVGGPVGAV
Ga0182021_110581801	3300014502	Fen	MTQERIVERKTVSETSPAPHETIEKDYVTGAPHGDEEAGGAVGG
Ga0182021_112675662	3300014502	Fen	MTQDRIVERKTVTETSAAPRETVEKDYVTGAPHGDEEAGGAVGGA
Ga0182021_122632262	3300014502	Fen	MTQERIVERTTVTETSAAPRETIEKDYVTGAPHGDEEAGGAVGGAVAGAVVGAVVG
Ga0182021_133711971	3300014502	Fen	MTERIVETETVTSDGAERRETLHKDSELGVPHGDEEAGGA
Ga0182027_121274961	3300014839	Fen	MTERIVKTETVTEGSAAPHETIEKDYVTGAPHGDEEAGGAVGGAVAGAVVGAVVGGPVGA
Ga0256681_117961501	3300023311	Freshwater	MTQDRIVERKTVTETSAAPRETVEKDYVTGAPHGDEEAGGAVGGAVAGAVVGAVVGGPVGAVVG
Ga0208851_10261861	3300025461	Arctic Peat Soil	MTEKTTVVRETTTEQAAEPRETVEKDYQTGIPHGDEEAGGAVGGA
Ga0208079_10189393	3300025481	Arctic Peat Soil	MTEDRVIERETVTESSPAPRETVEKDYVTGAPHGD
Ga0208079_10249953	3300025481	Arctic Peat Soil	MTQERNVERTTVTESSAAPRETVEKDYVAGVPHGDEEAGGAVGGA
Ga0208079_10732362	3300025481	Arctic Peat Soil	MTQERMVEQKTVTETSAAPRETIEKDYVTGAPHGDEEAGGAVGG
Ga0208079_10774051	3300025481	Arctic Peat Soil	MTQERIVERKTVTDTSAAPHETIEKDYVTGAPHGDEEAGGA
Ga0208587_10765611	3300025484	Arctic Peat Soil	MTQERIVERKTVTESSPAPHETIEKDYVTGAPHGDEEAGGAVGGAVAGAV
Ga0208587_10831532	3300025484	Arctic Peat Soil	MTQERVVEQKTVTETSAAPRETVEKDYVTGAPHGDEEAGGAVGGAVAGAVVGAVVG
Ga0208587_10854671	3300025484	Arctic Peat Soil	MTQERIVERKTVTESSAAPRETVEKDYVTGVPHGDEEAGGAVGGAVAGGVVGAVV
Ga0207932_10171515	3300025495	Arctic Peat Soil	MTQERIVERKTVTESSAAPRETVEKDYVAGAPHGDEE
Ga0207932_11037841	3300025495	Arctic Peat Soil	MTEKTTTVRETTTEQPVEPRETVEKDYQTGIPHGDEEAGGAAGGA
Ga0207931_10245371	3300025499	Arctic Peat Soil	MTQERNVERKTVTETSPAPHETVEKDYVTGAPHGDEEAGGAVGGAVGGA
Ga0208584_10993791	3300025533	Arctic Peat Soil	MTERRIVESDITDDGVERRETLRKDYVSGAPHGDEEAGGAVAGGVAGAVVGAVVGGPVGA
Ga0208584_11026152	3300025533	Arctic Peat Soil	MTDRIVERETITDDGAERRETLREDYVPGAPRHGDEEAGGAVAGGVGGAVVGAVVGGPVGAVVG
Ga0208584_11218572	3300025533	Arctic Peat Soil	MTEDRVVERKTATESGAAPRETVEKDYVAGVPHGDEEAGGAVGGA
Ga0208716_10033111	3300025548	Arctic Peat Soil	MTQERIVERKTATESSPAPRETIEKDYVTGAPHGDEEAGGAVGGAVAGAVV
Ga0207927_10271731	3300025579	Arctic Peat Soil	MTQERNVERTTVTESSAAPRETVEKDYVTGVPHGDEEAGGAVGGAVGGAVVGAVVGGPV
Ga0209385_11212842	3300025650	Arctic Peat Soil	MTEDRVVEQKTVTETSSAPRETVEKDYVTGAPHGDEEAGGAVGG
Ga0209744_10258813	3300025692	Arctic Peat Soil	MTQERIVERKTVTESSAAPHETIEKDYVTGAPHGDEE
Ga0209744_11154321	3300025692	Arctic Peat Soil	MTQERNVERKTVTESSAAPRETVEKDYVAGVPHGDEEAGGAVGGAVGGAVVGAVVGGPVGAVV
Ga0209744_11494253	3300025692	Arctic Peat Soil	MTEKTTTVRETTTEQPAEPRETVEKDYQTGIPHGDEEAGGAAGGAVGGAVVGAV
Ga0209746_11416171	3300025716	Arctic Peat Soil	MTQERIVERKTVTDTSAAPRETVEKDYVTGAPHGDEEAGGAVGGAVGG
Ga0209638_10067381	3300025725	Arctic Peat Soil	MTQERIVERTTVTESSPAPRETVEKDYVTGAPHGDEEAGGAVGGAVAGAVVGA
Ga0209638_10928621	3300025725	Arctic Peat Soil	MTQERIVERKTVSETSPAPHETIEKDYVTGAPHGDEEAGGAVG
Ga0209638_11257511	3300025725	Arctic Peat Soil	MTQERIVERKTVTESSPAPRETVEKDYVTGVPHGD
Ga0209638_11305023	3300025725	Arctic Peat Soil	MTEDRVVEQKTVTDSSPAPRETVEKDYVTGAPHGDEEAGGAVGGAVAGAVVGA
Ga0209745_10260994	3300025739	Arctic Peat Soil	MTEDTTIVRETTTEHAVEPHESIEKDYQTGVPHGDEEAGGAAGGAVAGAVVGAVVGGPV
Ga0209745_10363381	3300025739	Arctic Peat Soil	MTERRVTESETVTRTGGEPRETVEKDYVTGVPHGDEEAGGAVGGA
Ga0209539_10209554	3300025764	Arctic Peat Soil	MTQERNVERKTVTESSAAPRETVEKDYVAGVPHGDEEAGGAVGGAVGGAVVGAVVGGPVGAV
Ga0209539_13254482	3300025764	Arctic Peat Soil	MTERRVTESETVTRTGGEPRETVEKDYVTGVPHGDEEAGGAVVGAVVGAVVGAVVGGPV
Ga0209748_12668291	3300025836	Arctic Peat Soil	MTQERIVERKTVPESSAAPRETVEKDYVAGVPHGDEEAGGAVGGAVGGAVVGAVVGGPVG
Ga0209124_100684331	3300025852	Arctic Peat Soil	MTQERIVERKTVTESSPAPRETIEKDYVTGAPHGDE
Ga0209124_102530711	3300025852	Arctic Peat Soil	MTQERIVERKTVSETSPAPHETIEKDYVTGAPHGDEEAGGAV
Ga0209014_100040461	3300025857	Arctic Peat Soil	MTQERLVERKTVTESSAAPRETVEKDYVTGVPHGDEEAGGAVGGAVGGAVVGAV
Ga0209014_100911432	3300025857	Arctic Peat Soil	MTQERIVERKTVSETSPAPHETIEKDYVTGAPHGDEEAGGAVGGAVAGAVVG
Ga0209014_101362821	3300025857	Arctic Peat Soil	MTERRVTESETVTRTGGEPRETVEKDYVTDVPHGDEEAGGAVAGAVGGAVVGAVVGGPVGAV
Ga0209014_101585253	3300025857	Arctic Peat Soil	MTEDRVVEQKTVTDSSPAPRETVEKDYVTGAPHGDEEAGGAVGGAV
Ga0209429_100221201	3300025864	Arctic Peat Soil	MTEDRVIERETVTESSPAPRETVEKDYVTGAPHGDEEAGGAVGGAVGGAVVGAVVGGPV
Ga0209226_101949701	3300025865	Arctic Peat Soil	MTEDRVVERKTVTESSPAPHETIEKDYVTGAPHGDEEAGGAVGGAVGGAVVGAV
Ga0209540_100742191	3300025888	Arctic Peat Soil	MTQERNVERKTVTETSPAPHETVEKDYVTGAPHGDEEAGGAVGGAVGGAVVGAVV
Ga0209540_101321023	3300025888	Arctic Peat Soil	MTEDRVIERETVTESSPAPRETVEKDYVTGAPHGDEEAGGAVGGAVGGA
Ga0209540_102161672	3300025888	Arctic Peat Soil	MTQERVVEQKTVTETSAAPRETVEKDYVTGAPHGDEEAGGAV
Ga0209540_102303281	3300025888	Arctic Peat Soil	MTQERIVERKTVTESSPAPHETIEKDYVTGAPHGDEEAGGA
Ga0209585_101542421	3300025891	Arctic Peat Soil	MTEDRVIERETVTESSPAPRETVEKDYVAGVPHGDEEAGGAVGG
Ga0302299_103653273	3300030010	Fen	MTEKTTIVRETTTEQAAEPRETVEKDYQTGVPHGDEEAGGAVGGAVAGA
Ga0311348_114527291	3300030019	Fen	MTEKTTTVRETTTERAVEPRETVERDYQTGIPHGDEEAGGAVGGAVAGAVVGAVVGG
Ga0311366_106349421	3300030943	Fen	MTQERIVERTTVTETSAAPRETIEKDYVTGAPHGDEEAGGAVGG
Ga0265332_104561791	3300031238	Rhizosphere	MTEHTIIERETVTDTSAAPRETVEKDIVAGVPHGD
Ga0370481_0411534_3_122	3300034281	Untreated Peat Soil	MTQERIVERKTVTESSPAPRETVEKDYVTGVPHGDEEAGG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters