Metagenome / Metatranscriptome Family F102117

Overview

Basic Information

• Family ID: F102117
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 102
• Average Sequence Length: 59 residues
• Representative Sequence: MKWQYKEMGSRDKKGKLKYYRVTVEDWKIVDCQCPAREFRRHTPCKHMKRLNEKLTHLAI
• Number of Associated Samples: 86
• Number of Associated Scaffolds: 102

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 6.86 %
• % of genes near scaffold ends (potentially truncated): 28.43 %
• % of genes from short scaffolds (< 2000 bps): 70.59 %
• Associated GOLD sequencing projects: 82
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.51

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (53.922 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh (34.314 % of family members)
• Environment Ontology (ENVO): Unclassified (39.216 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline) (73.529 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 19.32%
  β-sheet: 27.27%
  Coil/Unstructured: 53.41%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF08282	Hydrolase_3	6.86
PF10688	Imp-YgjV	3.92
PF12705	PDDEXK_1	2.94
PF01370	Epimerase	2.94
PF04055	Radical_SAM	1.96
PF01041	DegT_DnrJ_EryC1	1.96
PF00118	Cpn60_TCP1	1.96
PF00166	Cpn10	1.96
PF00551	Formyl_trans_N	1.96
PF00085	Thioredoxin	1.96

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0560	Phosphoserine phosphatase	Amino acid transport and metabolism [E]	6.86
COG0561	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	Coenzyme transport and metabolism [H]	6.86
COG1877	Trehalose-6-phosphate phosphatase	Carbohydrate transport and metabolism [G]	6.86
COG2217	Cation-transporting P-type ATPase	Inorganic ion transport and metabolism [P]	6.86
COG3769	Mannosyl-3-phosphoglycerate phosphatase YedP/MpgP, HAD superfamily	Carbohydrate transport and metabolism [G]	6.86
COG0234	Co-chaperonin GroES (HSP10)	Posttranslational modification, protein turnover, chaperones [O]	1.96
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	1.96
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	1.96
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	1.96
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	1.96

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	46.08 %
Unclassified	root	N/A	53.92 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	10.78 %
Unclassified	root	N/A	53.92 %
Viruses	superkingdom	All Organisms → Viruses	35.29 %

Level 3

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	3.92 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	6.86 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	7.84 %
environmental samples	no rank	All Organisms → Viruses → environmental samples	0.98 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	23.53 %
Unclassified	root	N/A	53.92 %
unclassified viruses	clade	All Organisms → Viruses → unclassified viruses	0.98 %

Level 4

Name	Rank	Taxonomy	Distribution
DPANN group	clade	All Organisms → cellular organisms → Archaea → DPANN group	1.96 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	1.96 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	7.84 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	23.53 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.96 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.98 %
Unclassified	root	N/A	53.92 %
unclassified Archaea	no rank	All Organisms → cellular organisms → Archaea → unclassified Archaea	1.96 %
unclassified DNA viruses	no rank	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses	0.98 %
uncultured virus	species	All Organisms → Viruses → environmental samples → uncultured virus	0.98 %

Level 5

Name	Rank	Taxonomy	Distribution
archaeon	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	1.96 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	1.96 %
Candidatus Woesearchaeota	phylum	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota	1.96 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.98 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.98 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	23.53 %
Unclassified	root	N/A	53.92 %
unclassified dsDNA viruses	no rank	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses	0.98 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	0.98 %
uncultured virus	species	All Organisms → Viruses → environmental samples → uncultured virus	0.98 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	7.84 %

Level 6

Name	Rank	Taxonomy	Distribution
archaeon	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	1.96 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1.96 %
Candidatus Woesearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	1.96 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	7.84 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.98 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	23.53 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	0.98 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.98 %
Unclassified	root	N/A	53.92 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.98 %
uncultured virus	species	All Organisms → Viruses → environmental samples → uncultured virus	0.98 %

Level 7

Name	Rank	Taxonomy	Distribution
archaeon	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	1.96 %
Candidatus Woesearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	1.96 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	7.84 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.98 %
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	1.96 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.98 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	23.53 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	0.98 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.98 %
Unclassified	root	N/A	53.92 %
uncultured virus	species	All Organisms → Viruses → environmental samples → uncultured virus	0.98 %

Level 8

Name	Rank	Taxonomy	Distribution
archaeon	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	1.96 %
Candidatus Woesearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	1.96 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.98 %
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1.96 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.98 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	23.53 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	0.98 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.98 %
Unclassified	root	N/A	53.92 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	7.84 %
uncultured virus	species	All Organisms → Viruses → environmental samples → uncultured virus	0.98 %

Level 9

Name	Rank	Taxonomy	Distribution
archaeon	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	1.96 %
Candidatus Woesearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	1.96 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.98 %
Flavobacteriaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	0.98 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.98 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	23.53 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	0.98 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.98 %
Unclassified	root	N/A	53.92 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	7.84 %
uncultured virus	species	All Organisms → Viruses → environmental samples → uncultured virus	0.98 %

Level 10

Name	Rank	Taxonomy	Distribution
archaeon	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	1.96 %
Candidatus Woesearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	1.96 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.98 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.98 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	23.53 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	0.98 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.98 %
Unclassified	root	N/A	53.92 %
unclassified Flavobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae	0.98 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	7.84 %
uncultured virus	species	All Organisms → Viruses → environmental samples → uncultured virus	0.98 %

Level 11

Name	Rank	Taxonomy	Distribution
archaeon	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	1.96 %
Candidatus Woesearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	1.96 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.98 %
Flavobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	0.98 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.98 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	23.53 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	0.98 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.98 %
Unclassified	root	N/A	53.92 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	7.84 %
uncultured virus	species	All Organisms → Viruses → environmental samples → uncultured virus	0.98 %

Associated Scaffolds

Scaffold	Taxonomy	Length
(restricted) 3300014720|Ga0172376_10408075	All Organisms → cellular organisms → Bacteria	779
(restricted) 3300023210|Ga0233412_10515891	Not Available	541
3300000928|OpTDRAFT_10029170	All Organisms → Viruses → Predicted Viral	2210
3300000973|BBAY93_10140255	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	609
3300001419|JGI11705J14877_10000772	Not Available	19426
3300001748|JGI11772J19994_1008290	All Organisms → Viruses → Predicted Viral	1858
3300001955|GOS2237_1032611	Not Available	1486
3300002408|B570J29032_109567671	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	882
3300003346|JGI26081J50195_1000183	Not Available	27680
3300003617|JGI26082J51739_10098017	Not Available	746

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.02%
Host-Associated	Host-Associated	0.98%

Class

Habitat	Taxonomy	Distribution
Algae	Host-Associated → Algae	0.98%
Aquatic	Environmental → Aquatic	99.02%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	19.61%
Green Algae	Host-Associated → Algae → Green Algae	0.98%
Marine	Environmental → Aquatic → Marine	74.51%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	4.90%

Type

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	7.84%
Ectosymbionts	Host-Associated → Algae → Green Algae → Ectosymbionts	0.98%
Inlet	Environmental → Aquatic → Marine → Inlet	1.96%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	41.18%
Lake	Environmental → Aquatic → Freshwater → Lake	8.82%
Lentic	Environmental → Aquatic → Freshwater → Lentic	3.92%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	0.98%
Oceanic	Environmental → Aquatic → Marine → Oceanic	4.90%
Pelagic	Environmental → Aquatic → Marine → Pelagic	2.94%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	4.90%
Unclassified	Environmental → Aquatic → Marine → Unclassified	14.71%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	6.86%

Subtype

Habitat	Taxonomy	Distribution
Epilimnion	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion	0.98%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	1.96%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	34.31%
Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment	0.98%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	14.71%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	8.82%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	7.84%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	6.86%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	4.90%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	4.90%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	3.92%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	2.94%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	2.94%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	1.96%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	0.98%
Unclassified	Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified	0.98%

Habitat

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	4.90%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	2.94%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	1.96%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	6.86%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	6.86%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	1.96%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	1.96%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	0.98%
Freshwater And Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine	0.98%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	2.94%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	1.96%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	0.98%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	1.96%
Macroalgal Surface	Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface	0.98%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	4.90%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	4.90%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	3.92%
Marine	Environmental → Aquatic → Marine → Inlet → Unclassified → Marine	0.98%
Marine Water	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Water	0.98%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	2.94%
Pond Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water	2.94%
Saline Water And Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment	0.98%
Saline Water And Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment	0.98%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	34.31%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	2.94%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	0.98%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
3300000928	Marine plume microbial communities from the Columbia River - 25 PSU	Environmental
3300000973	Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY93	Host-Associated
3300001419	Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline water (15 m)	Environmental
3300001748	Saline surface water microbial communities from Etoliko Lagoon, Greece - surface water (0 m)	Environmental
3300001955	Marine microbial communities from Gulf of Panama, Panama - GS021	Environmental
3300002408	Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)	Environmental
3300003346	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_74LU_5_DNA	Environmental
3300003617	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_105LU_22_DNA	Environmental
3300003621	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_85LU_5_DNA	Environmental
3300004240	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN	Environmental

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
OpTDRAFT_100291707	3300000928	Freshwater And Marine	MKWQYNEMGSRDKKGKLKYYRVTVEDWKIVNCECPARGFRRHTPCKHMKRLNEKMSHLSI
BBAY93_101402552	3300000973	Macroalgal Surface	MKEWQYREMGSRNKKSGITVRDWRIVDCECKAREFRRYTPCKHMKRLSEKMSHLSIN*
JGI11705J14877_1000077236	3300001419	Saline Water And Sediment	MSKWQYREMGSRDKKGKLKYYNVTVEDWKIINCECPAREFRRHTPCKHMKRLSEKMSNLTII*
JGI11772J19994_10082902	3300001748	Saline Water And Sediment	MSKWQYRXMGSRXKKTGKXXYYXVTVXDWKIINCECPAREFRRHTPCKHMKRLSEKMSNLTII*
GOS2237_10326112	3300001955	Marine	MLPTEPNVENVENLKLKKMNSWQYREMGSRDKKGNLKYYNVTVTDWKISDCECAARQFRPYSPCKHMKRLNEKLTHLAI*
B570J29032_1095676711	3300002408	Freshwater	EMGSRDKKGNLKYYRVTVEDWKIVDCKCPAREFRRHTPCKHMKRLNEKLTHLTI*
JGI26081J50195_100018334	3300003346	Marine	MKWQYNEMGSRDKKGKLKYYRVTVEDWKIVNCECPARGFRRHTPCKHMKRLSEKMSHLSI
JGI26082J51739_100980171	3300003617	Marine	EMGSRDKKGKLSYYRVTVEDWKITDCECKAREFRRYTPCKHMKRLNEKLTHLTI*
JGI26083J51738_101181602	3300003621	Marine	MANSWYYREMGSRDKKGKLKYYQVRVTDYKIDDCECPARQFRSHSPCKHMKRLNEKLTHLAI*
Ga0007787_104678162	3300004240	Freshwater Lake	YKEMGSRDKKGNLKYYRVTVEDWKIVDCKCPAREFRRHTPCKHMKRLNEKLTHLTI*
Ga0068511_10027672	3300005057	Marine Water	MSNSWYYREMGSRDKKGNLKYYQVRVTDYKIDDCECMARQFRPYSPCKHMKRLQEKLSHLAI*
Ga0049081_102056583	3300005581	Freshwater Lentic	MGSRDKKGNLKYYRVTVEDWKIVDCKCPAREFRRHTPCKHMKRLNEKLTH
Ga0070743_100495253	3300005941	Estuarine	MKWQYNEMGSRDKKGNLKYYRVTVEDWKIVNCECPARGFRRHTPCKHMKRLSEKMSHLSI
Ga0070749_102376562	3300006802	Aqueous	MRWQYREIGSRDKKGKLKYYNVTVEDYKIINCECPAREFRRYTPCKHMKRLHEKCSHLAI
Ga0070745_11442322	3300007344	Aqueous	MKWQYKEMGSRDKKGKLSYYRVTVEDWKIVDCECKAREFRRHTPCKHMKRLNEKMNHLAI
Ga0099849_10794022	3300007539	Aqueous	MKWQYKEMGSRDKKGKLSYYRVTVTDWKITDCECKAREFRRHTPCKHMKRLNEKLTHLAI
Ga0114340_10362974	3300008107	Freshwater, Plankton	MGSRDKKGNLKYYRVTVEDWKIVDCQCPAREFRRHTPCKHMKRLNEKLTHLTI*
Ga0114340_10499584	3300008107	Freshwater, Plankton	KKGNLKYYRVTVEDWKIVDCKCPAREFRRHTPCKHMKRLNEKLTHLAI*
Ga0114876_10732601	3300008448	Freshwater Lake	MKWQYNEMGSRDKKGKLKYYRVTVEDWKIVDCQCPAREFRRHTPCKHMKRLNEKLTHLTI
Ga0114876_11312811	3300008448	Freshwater Lake	MKWQYKEMGSRDKKGNLKYYRVTVEDWKIVDCQCPAREFRRHTPCKHMKRLNAKLIHLTS
Ga0114880_10228535	3300008450	Freshwater Lake	MGSRDKKGNLKYYRVTVEDWKIVDCKCPAREFRRHTPCKHMKRLNEKLTHLAI*
Ga0102831_10206991	3300008996	Estuarine	MKWQYREMGSRDKKGKLSYYNVTVDDWKIIDCTCKAREFRRHTPCKHMISINKKLGHSL*
Ga0102960_10131706	3300009000	Pond Water	MTNSWYYREMGSRDKKGNLKYYQVRVTDYKIDDCECPARQFRSYSPCKHMKRLHEKLSHLSI*
Ga0102963_10328826	3300009001	Pond Water	MTNSWYYREMGSRDKKGNLKYYQVRVTDYKIDDCECPARQFRSYSPCKHMKRLHE
Ga0115566_100687813	3300009071	Pelagic Marine	MTNSWYYREMGSRDKKGNLKYYQVRVTDYKIDDCECPARSFRSYSPCKHMKRLHEKISHLAI*
Ga0115552_10747103	3300009077	Pelagic Marine	MTNSWYYREMGSRDKKGNLKYYQVRVTDYKIDDCECPARSFRSYSPCKHMKRLQEKLTHLSI*
(restricted) Ga0172376_104080752	3300014720	Freshwater	MKWQYKEMGSRDKKGNLKYYRVTVEDWKIVDCQCPAREFRRHTPCNHMKRLNEKLTHLTI
Ga0182095_18355312	3300016791	Salt Marsh	MKWQYKEMGSRDKKGKLSYYRVTVEDWKIVDCECKAREFRRYTPCKHMKRLNEKLTHLAI
Ga0181347_10169732	3300017722	Freshwater Lake	MKWQYREMGSRDKKGKLKYYRVTVEDWKIINCQCPAREFRRHTPCKHMKRLNEKLTHLTV
Ga0181565_101971381	3300017818	Salt Marsh	MKWQYKEMGSRDKKGKLSYYRVTVTDWKITDCECKAREFRRHSPCKHMKRLNEKLTHLAI
Ga0181552_101925793	3300017824	Salt Marsh	MANSWYYREMGSRDKKGKLKYYQVRVTDYKIDDCECPARQFRSYSPCKHMKRLNEKLSHLTT
Ga0181584_107774532	3300017949	Salt Marsh	MKWQYKEMGSRDKKGKLSYYRVTVEDWKIVDCECKAREFRRHSPCKHMKRLNEKLTHLAI
Ga0181607_102748283	3300017950	Salt Marsh	MKWQYKEMGSRDKKGKLSYYRVTVEDWKIVDCECKAREFRRHTPCKHMKRLNEKLTHLAI
Ga0181607_104681162	3300017950	Salt Marsh	MKWQYKEMGSRDKKGKLSYYRVTIEDWKIVDCECKAREFRRHTPCKHMKRLNEKLTHLAI
Ga0181583_106466871	3300017952	Salt Marsh	MANSWYYREMGSRDKKGKLKYYQVRVTDYKIDDCECPARQFRSYSPCKHMKRLNEKLSHLSI
Ga0181580_100164415	3300017956	Salt Marsh	MANSWYYREMGSRDKKGNLKYYQVKVTDYKIDDCECMARQFRPYSPCKHMKRLHEKLSHFAI
Ga0181580_100447249	3300017956	Salt Marsh	MGSRDKKGKLSYYRVTVEDWKIVDCECKAREFRRHTPCKHMKRLNEKLTHLAI
Ga0181580_101987081	3300017956	Salt Marsh	YYREMGSRDKKGKLKYYQVRVTDYKIDDCECPARQFRSHSPCKHMKRLNEKLTHLAI
Ga0181581_108013612	3300017962	Salt Marsh	MANSWYYREMGSRDKKGKLKYYQVRVTDYKIDDCECPARQFRSHSPCKHMKRLHEKLNHLAI
Ga0181590_100100741	3300017967	Salt Marsh	LVMANSWYYREMGSRDKKGKLKYYQVRVTDYKIDDCECPARQFRSHSPCKHMKRLNEKLTHLAI
Ga0181590_106545171	3300017967	Salt Marsh	INLLVMANSWYYREMGSRDKKGKLKYYQVRVTDYKIDDCECKAREFRPHSPCKHMKRLHEKLNHLAI
Ga0181585_102120091	3300017969	Salt Marsh	MANSWYYREMGSRDKKGKLKYYQVRVTDYKIDDCECPARQFRSHSPCKHMKRLNEKLTHLAI
Ga0181576_106957152	3300017985	Salt Marsh	MTNSWYYREMGSRDKKGNLKYYQVRVTDYKIDDCECMARQFRPYSPCKHMKRLHEKLSHFAI
Ga0181569_104042653	3300017986	Salt Marsh	MRNSWYYKEMGSRDKKGKLKYYQVKVVDYKIDDCECMARQFRPYSPCKHMKRLHEKLSHLSI
Ga0181569_108127251	3300017986	Salt Marsh	SRDKKGKLKYYQVRVTDYKIDDCECPARQFRSYSPCKHMKRLNEKLSHLSI
Ga0181572_105281072	3300018049	Salt Marsh	MTNSWYYREMGSRDKKGKLKYYQVRVTDYKIDDCECPARQFRSYSPCKHMKRLNEKLSHLTT
Ga0181553_103444404	3300018416	Salt Marsh	MTNSWYYREMGSRDKKGKLKYYQVRVTDYKIDDCECKAREFRPHSPCKHMKRLHEKLNHLAI
Ga0181558_104752571	3300018417	Salt Marsh	MKWQYREMGSRDKKGKLKYYNVTVEDYKIINCECPAREFRRYTPCKHMKRLHEKCS
Ga0181567_107260171	3300018418	Salt Marsh	MRNSWYYKEMGSRDKKGKLKYYQVRVTDYKIDDCECPARQFRSHSPCKHMKRIKEKLNHLSI
Ga0181563_103259952	3300018420	Salt Marsh	MKWQYREMGSRDKKGKLKYYNVTVEDYKIINCECPAREFRRYTPCKHMKRLHEKCSHLAI
Ga0181592_102196632	3300018421	Salt Marsh	MANSWYYREMGSRDKKGKLKYYQVRVTDYKIDDCECPARQFRSYSPCKHMKRLNEKLSHLTA
Ga0181591_105330073	3300018424	Salt Marsh	LVMANSWYYREMGSRDKKGKLKYYQVRVTDYKIDDCECPARQFRSYSPCKHMKRLNEKLSHLTT
Ga0181566_106618422	3300018426	Salt Marsh	MGSRDKKGKLKYYQVKVVDYKIDDCECMARQFRPYSPCKHMKRLHEKLSHLSI
Ga0181568_108493802	3300018428	Salt Marsh	MTNSWYYREMGSRDKKGNLKYYQVRVTDYKIDDCECMARQFRPYSPCKHMKRLHEKLSHLSI
Ga0181555_12118363	3300020051	Salt Marsh	MANSWYYREMGSRDKKGKLKYYQVRVTDYKIDDCECKAREFRPHSPCKHMKRLHEKLNHLAI
Ga0211732_10800732	3300020141	Freshwater	MGSRDKKGNLKYYRVTVEDWKIVDCKCPAREFRRHTPCKHMKRLNEKLTHLTI
Ga0211733_112388134	3300020160	Freshwater	MKWQYNEMGSRDKKGNLKYYRVTVEDWKIVDCKCPAREFRRHTPCKHMKRLNEKLTHLTI
Ga0181602_100699146	3300020173	Salt Marsh	MGSRDKKGKLSYYRVTVEDWKIVDCECKAREFRRHSPCKHMKRLNEKLTHLAI
Ga0181602_103305301	3300020173	Salt Marsh	MKWQYKEMGSRDKKGKLSYYRVTVEDWKIVDCECKAREFRRYTPCKHMKRLNEKMNHLAI
Ga0181605_100556913	3300020188	Salt Marsh	MGSRDKKGNLKYYRVTVEDWKIIDCQCPAREFRKHTPCKHMKRLNEKMSHLAI
Ga0211527_101231572	3300020378	Marine	MSNSWYYREMGSRDKKGNLKYYQVRVTDYKIDDCECMARQFRPYSPCKHMKRLQEKLSHLAI
Ga0211497_101046554	3300020394	Marine	MDSWYYREMGSRDKKGNLKYYQVRVTDYKIDDCECMARQFRPYSPCKHMKRLQEKLSHLA
Ga0211581_100779543	3300020429	Marine	MGSRDKKGNLKYYQVRVTDYKIDDCECMARQFRPYSPCKHMKRLQEKLSHLAI
Ga0211676_100002945	3300020463	Marine	MSNSWYYREMGSRDKKGNLKYYQVRVTDYTIDDCECMARQFRPYSPCKHMKRLQEKLSHLAI
Ga0211614_101799213	3300020471	Marine	MDSWYYREMGSRDKKGNLKYYQVRVTDYKIDDCECMARQFRPYSPCKHMKRLHEKLSHLS
Ga0213858_104669281	3300021356	Seawater	MANSWYYREMGSRDKKGNLKYYQVKVTDYKIDDCECMARQFRPYSPCKHMKRL
Ga0213859_1000007946	3300021364	Seawater	MTNSWYYREMGSRDKKGNLKYYQVRVTDYVIDDCECPARGFRRYTPCKHMKRLHEKLPHLAI
Ga0213866_105623562	3300021425	Seawater	MVDSYSWYYREMGSRDKKGNLKYYQVRVTDYKIDDCECMARQFKPHSPCKHMKRLHEKLGHLSI
Ga0222717_100051115	3300021957	Estuarine Water	MTNSWYYREMGSRDKKGNLKYYQVRVTDYKIDDCECPARQFRSYSPCKHMKRLHEKLSHLSI
Ga0222715_100345307	3300021960	Estuarine Water	MKWQYKEMGSRDKKGNLKYYRVTVEDWKIVDCQCPAREFRRHTPCKHMKRLNEKCSHLAL
Ga0222715_106265492	3300021960	Estuarine Water	MKWQYREMGSRDKKGKLSYYRVTVEDWKIIDCTCKAREFRRHTPCKHMISINQKLGHSL
Ga0222714_1001368012	3300021961	Estuarine Water	MGSRDKKGNLKYYRVTVEDWKIVDCQCPAREFRRHTPCKHMKRLNEKLTHLAI
Ga0222714_100294452	3300021961	Estuarine Water	MKWQYKEMGSRDKKGNLKYYRVTVEDWKIVDCQCPAREFRRHTPCKHMKRLNEKLTHLTI
Ga0222714_105510071	3300021961	Estuarine Water	RKSMKWQYKEMGSRDKKGNLKYYRVTVEDWKIVDCQCPAREFRRHTPCKHMKRLNEKLTHLTI
Ga0222713_107273971	3300021962	Estuarine Water	KWQYKEMGSRDKKGNLKYYRVTVEDWKIVDCQCPAREFRRHTPCKHMKRLNEKLTHLTI
Ga0255765_12327193	3300022921	Salt Marsh	MKWQYKEMGSRDKKGKLSYYRVTVEDWKIVDCECKAREFRRHTPCKHMKRLNEK
Ga0255753_10571904	3300022926	Salt Marsh	MGSRDKKGKLSYYRVTVEDWKIVDCECKAREFRRYTPCKHMKRLNEKMNHLAI
Ga0255770_103552461	3300022937	Salt Marsh	MANSWYYREMGSRDKKGKLKYYQVRVTDYKIDDCECPARQFRSHSPCKHMKRLNEKLTHL
Ga0255761_101548842	3300023170	Salt Marsh	ANSWYYREMGSRDKKGKLKYYQVRVTDYKIDDCECPARQFRSYSPCKHMKRLNEKLSHLS
Ga0255768_100941525	3300023180	Salt Marsh	EMLFLINLLVMANSWYYREMGSRDKKGNLKYYQVKVTDYKIDDCECMARQFRPYSPCKHMKRLHEKLSHFAI
(restricted) Ga0233412_105158912	3300023210	Seawater	MKWQYKEMGSRDKKGKLSYYRVTVEDWKITDCECKAREFRRYTPCKHMKRLNEKLTHLTI
Ga0244775_102590151	3300024346	Estuarine	MKWQYREMGSRDKKGKLSYYNVTVEDWKIIDCTCKAREFRRHTPCKHMISINKKLGHSL
Ga0244775_113393301	3300024346	Estuarine	MKWQYKEMGSRDKKGNLKYYRVTVEDWKIVDCKCPAREFRRHTPCKHMKRLNEKLTHLAI
Ga0244776_100338841	3300024348	Estuarine	MKWQYNEMGSRDKKGKLKYYRVTVEDWKIVNCECPARGFRRHTPCKHMKRLSEKMSHL
Ga0209557_10282593	3300025483	Marine	MGSRDKKGKLSYYRVTVEDWKITDCECKAREFRRYTPCKHMKRLNEKLTHLTI
Ga0208161_11581571	3300025646	Aqueous	TSKLTAHNGSINMKWQYREMGSRDKKGKLSYYRVTVEDWKIVDCECKAREFRRHSPCKHMKRLNEKLTHLAI
Ga0208160_11239083	3300025647	Aqueous	MGSRDKKGNLKYYRVTVEDWKIVDCQCPAREFRRHTPCKHMKRLN
Ga0209832_12110602	3300025830	Pelagic Marine	MTNSWYYREMGSRDKKGNLKYYQVRVTDYKIDDCECPARSFRSYSPCKHMKRLHEKISHLAI
Ga0209929_10457551	3300026187	Pond Water	MTNSWYYREMGSRDKKGNLKYYQVRVTDYKIDDCECPARQFRSYSPCKHMKRLHEK
Ga0257106_10340586	3300028194	Marine	LVMTNSWYYREMGSRNKKTGKLSYYQVRVTDYKIDDCECPARSFRSYSPCKHMKRLHEKLTHLSI
Ga0257114_10100653	3300028196	Marine	MTNSSWYYREMGSRNKKTGKLSYYQVRVTDYKIDDCECPARQFRSHSPCKHMKRLQQKLTQLSI
Ga0257110_10245452	3300028197	Marine	MGIYSLPKGTSWYYREMGSRNKKTGKLSYYNVKVTDHKIVDCECKAREFSRYTPCKHMKRLHEKIGHSL
Ga0257110_10346523	3300028197	Marine	MARSWKFREMGSRNKKTGKLSYYDVTVTDHRISNCNCKAKEFRPYTPCKHMFRLKEKLSHYTI
Ga0257110_12651042	3300028197	Marine	MSDFYTLPKGSKWQYREMGSRNKKTNRLSYYNVTVIDYKISECECKAREFNRYTPCKHMKRLNEKLTHLKI
Ga0315907_1001721513	3300031758	Freshwater	MGSRDKKGNLKYYRVTVEDWKIVDCQCPAREFRRHTPCKHMKRLNEKLTHLTI
Ga0315909_107540681	3300031857	Freshwater	MKWQYKEMGSRDKKGKLKYYRVTVEDWKIVDCQCPAREFRRHTPCKHMKRLNEKLTHLAI
Ga0315904_102313073	3300031951	Freshwater	MKWQYKEMGSRDKKGNLKYYRVTVEDWKIVDCQCPAREFRRHTPCKHMKRLNEKLTHLAI
Ga0315904_111231112	3300031951	Freshwater	PSNSNKMKWQYKEMGSRDKKGNLKYYRVTVEDWKIVDCQCPAREFRRHTPCKHMKRLNEKLTHLTI
Ga0315901_104802621	3300031963	Freshwater	MGSRDKKGNLKYYRVTVEDWKIVDCQCPAREFRRHTPCKHMKRL
Ga0315901_105344153	3300031963	Freshwater	NHLWLKGWNKKLRKSMKWQYKEMGSRDKKGKLKYYRVTVEDWKIVDCQCPAREFRRHTPCKHMKRLNEKLTHLAI
Ga0315902_104304603	3300032093	Freshwater	MKWQYNEMGSRDKKGKLKYYRVTVEDWKIVDCQCPAREFRRHTPCKHMKRLNEKLTHLAI
Ga0335027_0024554_4913_5077	3300034101	Freshwater	EMGSRDKKGNLKYYRVTVEDWKIVDCKCPAREFRRHTPCKHMKRLNEKLTHLTI