NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F102096

Metagenome Family F102096

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F102096
Family Type Metagenome
Number of Sequences 102
Average Sequence Length 45 residues
Representative Sequence ARLMIETARPDSLVGMFSFGGLSHEQVMRSIELFATKVMPALGA
Number of Associated Samples 89
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.98 %
% of genes near scaffold ends (potentially truncated) 94.12 %
% of genes from short scaffolds (< 2000 bps) 93.14 %
Associated GOLD sequencing projects 84
AlphaFold2 3D model prediction Yes
3D model pTM-score0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (93.137 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere
(7.843 % of family members)
Environment Ontology (ENVO) Unclassified
(38.235 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(38.235 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78
1JGI10215J12807_10638761
2F14TB_1035072471
3Ga0055465_102346101
4Ga0065705_101575573
5Ga0065707_105507461
6Ga0065707_105845201
7Ga0065707_106951392
8Ga0070660_1004272861
9Ga0066698_103074492
10Ga0066905_1012275731
11Ga0066905_1021887142
12Ga0066903_1045501213
13Ga0066903_1090908802
14Ga0075287_10459701
15Ga0066652_1015694202
16Ga0075421_1019029201
17Ga0079217_101050132
18Ga0079216_102469461
19Ga0075419_100803861
20Ga0079218_104994593
21Ga0075435_1002628811
22Ga0111539_103335871
23Ga0111539_106555281
24Ga0105092_100312413
25Ga0105092_108670282
26Ga0113563_104153933
27Ga0105088_10210801
28Ga0105058_11913241
29Ga0126380_116585122
30Ga0126377_115270841
31Ga0134121_104139951
32Ga0137428_11101481
33Ga0137431_10238921
34Ga0137399_116885892
35Ga0137369_101693321
36Ga0137384_106465991
37Ga0137375_110593621
38Ga0157351_10369811
39Ga0157354_10032171
40Ga0157352_10100301
41Ga0137358_103236961
42Ga0157284_103320851
43Ga0137413_110448012
44Ga0137404_121273071
45Ga0164300_100166674
46Ga0134076_101148582
47Ga0157375_122279251
48Ga0157375_131174011
49Ga0075313_11016872
50Ga0137412_109248891
51Ga0132257_1020495581
52Ga0132257_1033406232
53Ga0132257_1046204941
54Ga0182037_101647553
55Ga0134069_11117743
56Ga0163161_112163271
57Ga0184604_100240732
58Ga0184638_10517331
59Ga0184623_102390343
60Ga0184637_102355053
61Ga0066669_113256081
62Ga0222622_101010822
63Ga0209002_103055982
64Ga0209641_109234683
65Ga0209342_103043951
66Ga0210121_10578972
67Ga0207687_103424134
68Ga0207690_112758591
69Ga0207706_116027881
70Ga0207651_114168581
71Ga0207651_118982571
72Ga0207708_115281182
73Ga0207674_115726831
74Ga0207675_1019373782
75Ga0256821_10105271
76Ga0209808_11217853
77Ga0209846_10214382
78Ga0208685_10854452
79Ga0209998_100137463
80Ga0209819_100052541
81Ga0209515_106466502
82Ga0209814_100352161
83Ga0209465_101310143
84Ga0209481_105127302
85Ga0207428_106024982
86Ga0307312_103267801
87Ga0302046_104374841
88Ga0310907_107903352
89Ga0307410_107062671
90Ga0307406_120484282
91Ga0307412_104932191
92Ga0306921_104040183
93Ga0310909_105633182
94Ga0326597_100105436
95Ga0326597_100160167
96Ga0326597_103412151
97Ga0326597_110833482
98Ga0307409_1005135581
99Ga0310899_102455752
100Ga0335080_111179032
101Ga0316619_122177592
102Ga0247830_108250022
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 47.22%    β-sheet: 0.00%    Coil/Unstructured: 52.78%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

510152025303540ARLMIETARPDSLVGMFSFGGLSHEQVMRSIELFATKVMPALGASequenceα-helicesβ-strandsCoilSS Conf. score
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.45
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
93.1%6.9%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Freshwater Sediment
Freshwater Wetlands
Sediment
Groundwater
Natural And Restored Wetlands
Soil
Groundwater Sediment
Groundwater Sediment
Soil
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Grasslands Soil
Unplanted Soil
Switchgrass Rhizosphere
Agricultural Soil
Soil
Grasslands Soil
Soil
Soil
Soil
Soil
Natural And Restored Wetlands
Rice Paddy Soil
Soil
Tropical Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Soil
Groundwater Sand
Arabidopsis Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Arabidopsis Thaliana Rhizosphere
Switchgrass Rhizosphere
Populus Rhizosphere
Rhizosphere
Miscanthus Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Corn Rhizosphere
2.9%2.9%3.9%7.8%7.8%2.9%3.9%2.9%3.9%2.9%4.9%2.9%2.9%7.8%3.9%2.9%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI10215J12807_106387613300000881SoilDTVIKKARQMITTAKPDSLVGMFQFGALKHEQVMHSLELFGAKVMPVLGD*
F14TB_10350724713300001431SoilDCLVGMFSFGGLKHEQVMRSIELFATKVMPALGA*
Ga0055465_1023461013300004013Natural And Restored WetlandsRAMMETAKPDSLVGMFSFGGLSHDQVTRSIELFATKVKPALGL*
Ga0065705_1015755733300005294Switchgrass RhizospherePETVIKKARMMIETAKPDSLVGMFQFGGLKHEQVMHSLELFGTKVMPALGA*
Ga0065707_1055074613300005295Switchgrass RhizosphereLMIETARPDSLVGMFSFGGLSHEQVMRSIELFGTKVMPALGD*
Ga0065707_1058452013300005295Switchgrass RhizosphereARLMIETARPDSLVGMFSFGGLSHEQVMRSIELFATKVMPALGA*
Ga0065707_1069513923300005295Switchgrass RhizosphereKKARSMIETARPDSLVGMFSFGGLSHEQVMRSIELFATKVMPALGA*
Ga0070660_10042728613300005339Corn RhizosphereAKAREMIAIARPDTLVGMFSFGGLQHEQVMRSIELFATKVIPALGM*
Ga0066698_1030744923300005558SoilARPDCLVGMFSFGGLNHEQVMRSIELFATKVMPALGA*
Ga0066905_10122757313300005713Tropical Forest SoilKARVMIETARPDCLVGMFSFGGLTHEQIAHSIKLFGTKVMPALGA*
Ga0066905_10218871423300005713Tropical Forest SoilRLMIETARPDSLVGMFSFGGLSHEQVMRSIELFATKVMPALGA*
Ga0066903_10455012133300005764Tropical Forest SoilEAARPDCLVGMFSFGGLSHEQVTRSIELFATKVMPALG*
Ga0066903_10909088023300005764Tropical Forest SoilVVKKARLMIETARPDSLVGMFSFGGLSHEQVMRSIELFATQVMPALGN*
Ga0075287_104597013300005873Rice Paddy SoilTARPDCLVGMFSFGGLKHEQVMRSIELFATKVMPALGA*
Ga0066652_10156942023300006046SoilSPDTVIKKARVMIETARPDTLVGMFSFGGLHHEQVMHSIELFATKVIPALGA*
Ga0075421_10190292013300006845Populus RhizosphereLTVKRLDEWGTSLIGSPATVISKARAMIETAKPDSLVGMFQFGGLKHEQVMHSLELFGNKVIPALGS*
Ga0079217_1010501323300006876Agricultural SoilTAKPDCLVGMFSFGGLRHEQVMRSIELFGTKVMPVLGA*
Ga0079216_1024694613300006918Agricultural SoilTVIKKARQMIETAKPDCLVGMFSFGGLKHEQVMHSIELFGTKVMPVLGA*
Ga0075419_1008038613300006969Populus RhizospherePETVIKKARSMIETARPDSLVGMFSFGGLSHEQVMRSIELFATKVMPALGA*
Ga0079218_1049945933300007004Agricultural SoilDTAKPDCLVGMFSFGGLRHEQVMRSIELFGTKVMPVLGA*
Ga0075435_10026288113300007076Populus RhizosphereARPDTLVGMFSFGGLRHEQVMRSIELFATKVMPALEM*
Ga0111539_1033358713300009094Populus RhizosphereREMIAIARPDTLVGMFSFGGLRHEQVMRSIELFATKVMPALGM*
Ga0111539_1065552813300009094Populus RhizosphereSARPDSLVGMFSFGGLKHEQVMHSIDLFATKVMPALGA*
Ga0105092_1003124133300009157Freshwater SedimentSPETVIKKARAMIETARPDSLVGMFRFGGLSHTQVTRSIELFGTKVMPALGA*
Ga0105092_1086702823300009157Freshwater SedimentETARPDSLVGMFSFGGLSHAQVSRSIELFGAKVMPVLGA*
Ga0113563_1041539333300009167Freshwater WetlandsITTAKPDSLVGMFQFGALKHEQVMHSLGLFGAKVMPALGDW*
Ga0105088_102108013300009810Groundwater SandPDSLVGMFSFGGLSHQQVTRSIELFGTKVMPALGV*
Ga0105058_119132413300009837Groundwater SandIETAKPDSLVGMFSFGGLKHEQVMHSLELFGSKVMPALGA*
Ga0126380_1165851223300010043Tropical Forest SoilRPDCLVGMFSFGGLSHEQIMHSLELFGTKVIPAIG*
Ga0126377_1152708413300010362Tropical Forest SoilETARPDSLVGMFSFGGLSHEQVMRSIELFGTKVMPALGLDTRKK*
Ga0134121_1041399513300010401Terrestrial SoilSARPDTLVGMFSFGGLQHQQVMRSIENFGTKIIPALGM*
Ga0137428_111014813300011432SoilKKARMMIETARPDCLVGMCSFGGLSHEQVMRSIELFGTHVIAALKNKPAAL*
Ga0137431_102389213300012038SoilRAMIETAKPDSLVGMFSFGGLKHEQVMHSLELFGSKVIPALGA*
Ga0137399_1168858923300012203Vadose Zone SoilNTVIKKARVMIETARPDSLVGMFSFGGLKHEQVMHSIELFATKVMPALGA*
Ga0137369_1016933213300012355Vadose Zone SoilTARPDCLVGMFSFGGLKHEQVMRSIELFATKVMPALGG*
Ga0137384_1064659913300012357Vadose Zone SoilTVLKKARQMIETARPDCLVGMFSFGGLSNEQVMRSIELLATKVKPFLDGI*
Ga0137375_1105936213300012360Vadose Zone SoilLIGMFQFGGPRHDQVMHSIELFAERVIPALAAEVAAPAI*
Ga0157351_103698113300012501Unplanted SoilTVIKKARAMIETARPDSLVGMFSFGGLSHQQVTRSIELFGTQVMPALGRVT*
Ga0157354_100321713300012517Unplanted SoilKARVMIESARPDSLVGMFSFGGLKHEQVMHSIDLFATKVMPALGA*
Ga0157352_101003013300012519Unplanted SoilIGSPQTVIEKAREMIAITRPDTLVGMFSFGGLQHQQVMRSIENFGTKVIPALGM*
Ga0137358_1032369613300012582Vadose Zone SoilPETVLKKARSMIDTARPDSLVGMFSFGGLSHAQVTRSIELFGTKVMLALGD*
Ga0157284_1033208513300012893SoilREMIAIARPDTLVGMFSFGGLQHEQVMRSIELFATKVIPALGM*
Ga0137413_1104480123300012924Vadose Zone SoilIESARPDSLVGMFSFGGLKQEQVMHSIELFATKVMPALGA*
Ga0137404_1212730713300012929Vadose Zone SoilKARQMIETAKPDSLVGMFSFGGLSHQQVMRSIELFGTKVMPALGA*
Ga0164300_1001666743300012951SoilTSLIGSPQTVIAKAREMIAIARPDTLVGMFSFGGLQHQQAMRSIENFGTKVIPALGM*
Ga0134076_1011485823300012976Grasslands SoilDCLVGMFSFGGLNHEQVMRSIELFATKVMPALGA*
Ga0157375_1222792513300013308Miscanthus RhizosphereAKPDSLVGMFSFGGLKHEQVMHSIELFASKVMPALGA*
Ga0157375_1311740113300013308Miscanthus RhizospherePDTLVGMFSFGGLQHEQVMRSIELFATKVIPTLGM*
Ga0075313_110168723300014267Natural And Restored WetlandsRPDSLVGMFSFGGLSHQQVTRSIELFATQVMPALGA*
Ga0137412_1092488913300015242Vadose Zone SoilDSLVGMFSFGGLKHEQVMHSIELFATRVMPALGA*
Ga0132257_10204955813300015373Arabidopsis RhizosphereRVMIESARPDSLVGMFSFGGLKHEQVMHSIDLFATKVMPALGA*
Ga0132257_10334062323300015373Arabidopsis RhizosphereARPDSLVGMFSFGGLKHEQVMHSIDLFATKVMPALGA*
Ga0132257_10462049413300015373Arabidopsis RhizosphereKAREMIAIARPDTLVGMFSFGGLQHQQVMRSIENFGTKVIPALGM*
Ga0182037_1016475533300016404SoilREMIAIARPDTLVGMFSFGGLRHEQVMHSIELFATKVMPALGM
Ga0134069_111177433300017654Grasslands SoilRPDCLVGMFSFGGLSHEQVMRSIELFATKVKPFLDGI
Ga0163161_1121632713300017792Switchgrass RhizospherePDTVIKKARQMITTAKPDSLVGMFQFGALKHEQVMHSLELFGAKVMPALGD
Ga0184604_1002407323300018000Groundwater SedimentPETVLKKARSMIETAKPDSLVGMFSFGGLKHEQVMHSIELFASKVMPALGA
Ga0184638_105173313300018052Groundwater SedimentKARMMIETARPDCLVGMCSFGGLSHEQVSRSIELFGTKVIPALKNECAGK
Ga0184623_1023903433300018056Groundwater SedimentMIETARPDCLVGMFSFGGLSHEQITHSIELFGTKVMPALGG
Ga0184637_1023550533300018063Groundwater SedimentPDSLVGMFSFGGLSHEQVMRSIELFGTKVMPALGR
Ga0066669_1132560813300018482Grasslands SoilMIETARPDSLVGMFSFGGLKHEQVMHSIELFATKVMPALGA
Ga0222622_1010108223300022756Groundwater SedimentMIETARPDSLVGMFSFGGLKHEQVMHSIDLFATKVMPALGA
Ga0209002_1030559823300025289SoilMIATAKPDSLVGMFSFGGLSHEQVMRSIELFATKVMPALGG
Ga0209641_1092346833300025322SoilHRGGQGAAVVSHGIVARAMIATAKPDSLVGMFSFGGLSHEQVMRSIELFATKVMPALGG
Ga0209342_1030439513300025326SoilVSHGIVARAMIATAKPDSLVGMFSFGGLSHEQVMRSIELFATKVMPALGG
Ga0210121_105789723300025555Natural And Restored WetlandsSPDTVIKKAHAMLATAKPDSLVGMFQFGGLKHEQVRHSLELFGTKVMPALGA
Ga0207687_1034241343300025927Miscanthus RhizosphereTVLAKAREMIAIARPDTLVGMFSFGGLQHEQVMRSIELFATKVIPALGM
Ga0207690_1127585913300025932Corn RhizosphereARPDTLVGMFSFGGLQHEQVMRSIELFATKVIPALGM
Ga0207706_1160278813300025933Corn RhizospherePDSLVGMFSFGGLKHEQVMHSIDLFATKVMPALGA
Ga0207651_1141685813300025960Switchgrass RhizosphereVLAKAREMIAIARPDTLVGMFSFGGLQHEQVMRSIELFATKVIPALGM
Ga0207651_1189825713300025960Switchgrass RhizosphereETVVKKAREMIETARPDCLVGMFSFGGLSHAQVMHSIDLFAKKVMPALRENS
Ga0207708_1152811823300026075Corn, Switchgrass And Miscanthus RhizosphereTVLKKARSMIETAKPDSLVGMFSFGGLKHEQVMHSIELFAAKVMPALGA
Ga0207674_1157268313300026116Corn RhizosphereKKARSMIETAKPDSLVGMFSFGGLKHEQVMHSIELFAAKVMPALGA
Ga0207675_10193737823300026118Switchgrass RhizosphereNTVIKKARVMIESARPDSLVGMFSFGGLKHEQVMHSIDLFATKVMPALGA
Ga0256821_101052713300026452SedimentVVKKAREIIATARPDCLVGMFSFGGLSHAQVTRSIELFGTQVMPRLRAEPLG
Ga0209808_112178533300026523SoilETARPDCLVGMFSFGGLSHEQVMRSIELFATKVKPFLDGI
Ga0209846_102143823300027277Groundwater SandTVIKKARSMIETAKPDSLVGMFSFGGLSHEQVMRSIELFGTKVMPALGV
Ga0208685_108544523300027513SoilVIKKARAMIETARPDSLVGMFSFGGLSHQQVTRSIELFATKVMPALGA
Ga0209998_1001374633300027717Arabidopsis Thaliana RhizosphereVATARPDCLVGMFSFGGLKHEQVMRSIELFATKVMPALGS
Ga0209819_1000525413300027722Freshwater SedimentKARAMIETARPDSLVGMFSFGGLNHAQVTRSIELFGTKVMPALGA
Ga0209515_1064665023300027835GroundwaterDSLVGIFSFGGLSHAQVIRSLELFATRVIPALADESVGP
Ga0209814_1003521613300027873Populus RhizospherePETVIKKARSMIETARPDSLVGMFSFGGLSHEQVMRSIELFATKVMPALGA
Ga0209465_1013101433300027874Tropical Forest SoilTARPDSLVGMFSFGGLSHEQVMRSIELFGTKVMPALGA
Ga0209481_1051273023300027880Populus RhizosphereTVIKKARSMIETARPDSLVGMFSFGGLSHEQVMRSIELFATKVMPALGA
Ga0207428_1060249823300027907Populus RhizosphereIAIARPDTLVGMFSFGGLRHEQVMRSIELFATKVMPALGM
Ga0307312_1032678013300028828SoilETARPDTLVGMFSFGGLHHEQVMHSIELFATKVIPALGA
Ga0302046_1043748413300030620SoilMARPDCLVGLFSFGGQSHAQVTRSIELFATRVMPFLAD
Ga0310907_1079033523300031847SoilLIGSPQTVLAKTRAMIETAKPDSLVGMFSFGGLSHDQVTRSIELFANKVRPALGL
Ga0307410_1070626713300031852RhizosphereMIETAKPDSLVGMFSFGGLSHDQVTRSIELFATEVRPALGS
Ga0307406_1204842823300031901RhizosphereIGSPHTVIKKARMMIAMARPDSLVGMFQFGGLKHEQVMHSIELFGAKVMPALGA
Ga0307412_1049321913300031911RhizosphereHTVIKKARMMIAMARPDSLVGMFQFGGLKHEQVMHSIELFGAKVMPALGA
Ga0306921_1040401833300031912SoilAREMIAIARPDTLVGMFSFGGLRHEQVMHSIELFATKVMPALGM
Ga0310909_1056331823300031947SoilTSLISSPQTVLAKAREMIAIARPDTLVGMFSFGGLRHEQVMHSIELFATKVMPALGM
Ga0326597_1001054363300031965SoilMIATAKPDSLVGMFSFGGCLSHEQVMRSIELFATKVMPGLAG
Ga0326597_1001601673300031965SoilMRSWFVLEMIETAKPDSLVSMFSFGGLSHEQVMRSIELFATEVMPALGG
Ga0326597_1034121513300031965SoilDTVVKKARAMIETARPDSLVGMFSFGGLKHEQVMHSLELFGGKVMPALGA
Ga0326597_1108334823300031965SoilVLETIATAKPDSLVGMFSFGGLSHEQVIRSIELFATKVMPGLGG
Ga0307409_10051355813300031995RhizosphereDEWGTSLIGSPHTVIKKARMMIAMARPDSLVGMFQFGGLKHEQVMHSIELFGAKVMPALG
Ga0310899_1024557523300032017SoilTVIEKVREVIAIARPDTLVGMFSFGGLQHQQVMRSIENFGTKVIPALGM
Ga0335080_1111790323300032828SoilPETVIEKARAMIETARPDCLVGMFSFGGLSHEQVMRSIELFATTVMPAIG
Ga0316619_1221775923300033414SoilETVIKKARAMMATAKPDSLVGMFQFGGLKHEQVMHSLELFGTKVMPALGT
Ga0247830_1082500223300033551SoilAREMIAIARPDTLVGMFSFGGLQHQQVMRSIENFGTKVIPALGM


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.