Basic Information | |
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Family ID | F102096 |
Family Type | Metagenome |
Number of Sequences | 102 |
Average Sequence Length | 45 residues |
Representative Sequence | ARLMIETARPDSLVGMFSFGGLSHEQVMRSIELFATKVMPALGA |
Number of Associated Samples | 89 |
Number of Associated Scaffolds | 102 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 0.98 % |
% of genes near scaffold ends (potentially truncated) | 94.12 % |
% of genes from short scaffolds (< 2000 bps) | 93.14 % |
Associated GOLD sequencing projects | 84 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.45 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (93.137 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (7.843 % of family members) |
Environment Ontology (ENVO) | Unclassified (38.235 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (38.235 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 47.22% β-sheet: 0.00% Coil/Unstructured: 52.78% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.45 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Freshwater Sediment Freshwater Wetlands Sediment Groundwater Natural And Restored Wetlands Soil Groundwater Sediment Groundwater Sediment Soil Soil Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Grasslands Soil Unplanted Soil Switchgrass Rhizosphere Agricultural Soil Soil Grasslands Soil Soil Soil Soil Soil Natural And Restored Wetlands Rice Paddy Soil Soil Tropical Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Soil Groundwater Sand Arabidopsis Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Arabidopsis Thaliana Rhizosphere Switchgrass Rhizosphere Populus Rhizosphere Rhizosphere Miscanthus Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Corn Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI10215J12807_10638761 | 3300000881 | Soil | DTVIKKARQMITTAKPDSLVGMFQFGALKHEQVMHSLELFGAKVMPVLGD* |
F14TB_1035072471 | 3300001431 | Soil | DCLVGMFSFGGLKHEQVMRSIELFATKVMPALGA* |
Ga0055465_102346101 | 3300004013 | Natural And Restored Wetlands | RAMMETAKPDSLVGMFSFGGLSHDQVTRSIELFATKVKPALGL* |
Ga0065705_101575573 | 3300005294 | Switchgrass Rhizosphere | PETVIKKARMMIETAKPDSLVGMFQFGGLKHEQVMHSLELFGTKVMPALGA* |
Ga0065707_105507461 | 3300005295 | Switchgrass Rhizosphere | LMIETARPDSLVGMFSFGGLSHEQVMRSIELFGTKVMPALGD* |
Ga0065707_105845201 | 3300005295 | Switchgrass Rhizosphere | ARLMIETARPDSLVGMFSFGGLSHEQVMRSIELFATKVMPALGA* |
Ga0065707_106951392 | 3300005295 | Switchgrass Rhizosphere | KKARSMIETARPDSLVGMFSFGGLSHEQVMRSIELFATKVMPALGA* |
Ga0070660_1004272861 | 3300005339 | Corn Rhizosphere | AKAREMIAIARPDTLVGMFSFGGLQHEQVMRSIELFATKVIPALGM* |
Ga0066698_103074492 | 3300005558 | Soil | ARPDCLVGMFSFGGLNHEQVMRSIELFATKVMPALGA* |
Ga0066905_1012275731 | 3300005713 | Tropical Forest Soil | KARVMIETARPDCLVGMFSFGGLTHEQIAHSIKLFGTKVMPALGA* |
Ga0066905_1021887142 | 3300005713 | Tropical Forest Soil | RLMIETARPDSLVGMFSFGGLSHEQVMRSIELFATKVMPALGA* |
Ga0066903_1045501213 | 3300005764 | Tropical Forest Soil | EAARPDCLVGMFSFGGLSHEQVTRSIELFATKVMPALG* |
Ga0066903_1090908802 | 3300005764 | Tropical Forest Soil | VVKKARLMIETARPDSLVGMFSFGGLSHEQVMRSIELFATQVMPALGN* |
Ga0075287_10459701 | 3300005873 | Rice Paddy Soil | TARPDCLVGMFSFGGLKHEQVMRSIELFATKVMPALGA* |
Ga0066652_1015694202 | 3300006046 | Soil | SPDTVIKKARVMIETARPDTLVGMFSFGGLHHEQVMHSIELFATKVIPALGA* |
Ga0075421_1019029201 | 3300006845 | Populus Rhizosphere | LTVKRLDEWGTSLIGSPATVISKARAMIETAKPDSLVGMFQFGGLKHEQVMHSLELFGNKVIPALGS* |
Ga0079217_101050132 | 3300006876 | Agricultural Soil | TAKPDCLVGMFSFGGLRHEQVMRSIELFGTKVMPVLGA* |
Ga0079216_102469461 | 3300006918 | Agricultural Soil | TVIKKARQMIETAKPDCLVGMFSFGGLKHEQVMHSIELFGTKVMPVLGA* |
Ga0075419_100803861 | 3300006969 | Populus Rhizosphere | PETVIKKARSMIETARPDSLVGMFSFGGLSHEQVMRSIELFATKVMPALGA* |
Ga0079218_104994593 | 3300007004 | Agricultural Soil | DTAKPDCLVGMFSFGGLRHEQVMRSIELFGTKVMPVLGA* |
Ga0075435_1002628811 | 3300007076 | Populus Rhizosphere | ARPDTLVGMFSFGGLRHEQVMRSIELFATKVMPALEM* |
Ga0111539_103335871 | 3300009094 | Populus Rhizosphere | REMIAIARPDTLVGMFSFGGLRHEQVMRSIELFATKVMPALGM* |
Ga0111539_106555281 | 3300009094 | Populus Rhizosphere | SARPDSLVGMFSFGGLKHEQVMHSIDLFATKVMPALGA* |
Ga0105092_100312413 | 3300009157 | Freshwater Sediment | SPETVIKKARAMIETARPDSLVGMFRFGGLSHTQVTRSIELFGTKVMPALGA* |
Ga0105092_108670282 | 3300009157 | Freshwater Sediment | ETARPDSLVGMFSFGGLSHAQVSRSIELFGAKVMPVLGA* |
Ga0113563_104153933 | 3300009167 | Freshwater Wetlands | ITTAKPDSLVGMFQFGALKHEQVMHSLGLFGAKVMPALGDW* |
Ga0105088_10210801 | 3300009810 | Groundwater Sand | PDSLVGMFSFGGLSHQQVTRSIELFGTKVMPALGV* |
Ga0105058_11913241 | 3300009837 | Groundwater Sand | IETAKPDSLVGMFSFGGLKHEQVMHSLELFGSKVMPALGA* |
Ga0126380_116585122 | 3300010043 | Tropical Forest Soil | RPDCLVGMFSFGGLSHEQIMHSLELFGTKVIPAIG* |
Ga0126377_115270841 | 3300010362 | Tropical Forest Soil | ETARPDSLVGMFSFGGLSHEQVMRSIELFGTKVMPALGLDTRKK* |
Ga0134121_104139951 | 3300010401 | Terrestrial Soil | SARPDTLVGMFSFGGLQHQQVMRSIENFGTKIIPALGM* |
Ga0137428_11101481 | 3300011432 | Soil | KKARMMIETARPDCLVGMCSFGGLSHEQVMRSIELFGTHVIAALKNKPAAL* |
Ga0137431_10238921 | 3300012038 | Soil | RAMIETAKPDSLVGMFSFGGLKHEQVMHSLELFGSKVIPALGA* |
Ga0137399_116885892 | 3300012203 | Vadose Zone Soil | NTVIKKARVMIETARPDSLVGMFSFGGLKHEQVMHSIELFATKVMPALGA* |
Ga0137369_101693321 | 3300012355 | Vadose Zone Soil | TARPDCLVGMFSFGGLKHEQVMRSIELFATKVMPALGG* |
Ga0137384_106465991 | 3300012357 | Vadose Zone Soil | TVLKKARQMIETARPDCLVGMFSFGGLSNEQVMRSIELLATKVKPFLDGI* |
Ga0137375_110593621 | 3300012360 | Vadose Zone Soil | LIGMFQFGGPRHDQVMHSIELFAERVIPALAAEVAAPAI* |
Ga0157351_10369811 | 3300012501 | Unplanted Soil | TVIKKARAMIETARPDSLVGMFSFGGLSHQQVTRSIELFGTQVMPALGRVT* |
Ga0157354_10032171 | 3300012517 | Unplanted Soil | KARVMIESARPDSLVGMFSFGGLKHEQVMHSIDLFATKVMPALGA* |
Ga0157352_10100301 | 3300012519 | Unplanted Soil | IGSPQTVIEKAREMIAITRPDTLVGMFSFGGLQHQQVMRSIENFGTKVIPALGM* |
Ga0137358_103236961 | 3300012582 | Vadose Zone Soil | PETVLKKARSMIDTARPDSLVGMFSFGGLSHAQVTRSIELFGTKVMLALGD* |
Ga0157284_103320851 | 3300012893 | Soil | REMIAIARPDTLVGMFSFGGLQHEQVMRSIELFATKVIPALGM* |
Ga0137413_110448012 | 3300012924 | Vadose Zone Soil | IESARPDSLVGMFSFGGLKQEQVMHSIELFATKVMPALGA* |
Ga0137404_121273071 | 3300012929 | Vadose Zone Soil | KARQMIETAKPDSLVGMFSFGGLSHQQVMRSIELFGTKVMPALGA* |
Ga0164300_100166674 | 3300012951 | Soil | TSLIGSPQTVIAKAREMIAIARPDTLVGMFSFGGLQHQQAMRSIENFGTKVIPALGM* |
Ga0134076_101148582 | 3300012976 | Grasslands Soil | DCLVGMFSFGGLNHEQVMRSIELFATKVMPALGA* |
Ga0157375_122279251 | 3300013308 | Miscanthus Rhizosphere | AKPDSLVGMFSFGGLKHEQVMHSIELFASKVMPALGA* |
Ga0157375_131174011 | 3300013308 | Miscanthus Rhizosphere | PDTLVGMFSFGGLQHEQVMRSIELFATKVIPTLGM* |
Ga0075313_11016872 | 3300014267 | Natural And Restored Wetlands | RPDSLVGMFSFGGLSHQQVTRSIELFATQVMPALGA* |
Ga0137412_109248891 | 3300015242 | Vadose Zone Soil | DSLVGMFSFGGLKHEQVMHSIELFATRVMPALGA* |
Ga0132257_1020495581 | 3300015373 | Arabidopsis Rhizosphere | RVMIESARPDSLVGMFSFGGLKHEQVMHSIDLFATKVMPALGA* |
Ga0132257_1033406232 | 3300015373 | Arabidopsis Rhizosphere | ARPDSLVGMFSFGGLKHEQVMHSIDLFATKVMPALGA* |
Ga0132257_1046204941 | 3300015373 | Arabidopsis Rhizosphere | KAREMIAIARPDTLVGMFSFGGLQHQQVMRSIENFGTKVIPALGM* |
Ga0182037_101647553 | 3300016404 | Soil | REMIAIARPDTLVGMFSFGGLRHEQVMHSIELFATKVMPALGM |
Ga0134069_11117743 | 3300017654 | Grasslands Soil | RPDCLVGMFSFGGLSHEQVMRSIELFATKVKPFLDGI |
Ga0163161_112163271 | 3300017792 | Switchgrass Rhizosphere | PDTVIKKARQMITTAKPDSLVGMFQFGALKHEQVMHSLELFGAKVMPALGD |
Ga0184604_100240732 | 3300018000 | Groundwater Sediment | PETVLKKARSMIETAKPDSLVGMFSFGGLKHEQVMHSIELFASKVMPALGA |
Ga0184638_10517331 | 3300018052 | Groundwater Sediment | KARMMIETARPDCLVGMCSFGGLSHEQVSRSIELFGTKVIPALKNECAGK |
Ga0184623_102390343 | 3300018056 | Groundwater Sediment | MIETARPDCLVGMFSFGGLSHEQITHSIELFGTKVMPALGG |
Ga0184637_102355053 | 3300018063 | Groundwater Sediment | PDSLVGMFSFGGLSHEQVMRSIELFGTKVMPALGR |
Ga0066669_113256081 | 3300018482 | Grasslands Soil | MIETARPDSLVGMFSFGGLKHEQVMHSIELFATKVMPALGA |
Ga0222622_101010822 | 3300022756 | Groundwater Sediment | MIETARPDSLVGMFSFGGLKHEQVMHSIDLFATKVMPALGA |
Ga0209002_103055982 | 3300025289 | Soil | MIATAKPDSLVGMFSFGGLSHEQVMRSIELFATKVMPALGG |
Ga0209641_109234683 | 3300025322 | Soil | HRGGQGAAVVSHGIVARAMIATAKPDSLVGMFSFGGLSHEQVMRSIELFATKVMPALGG |
Ga0209342_103043951 | 3300025326 | Soil | VSHGIVARAMIATAKPDSLVGMFSFGGLSHEQVMRSIELFATKVMPALGG |
Ga0210121_10578972 | 3300025555 | Natural And Restored Wetlands | SPDTVIKKAHAMLATAKPDSLVGMFQFGGLKHEQVRHSLELFGTKVMPALGA |
Ga0207687_103424134 | 3300025927 | Miscanthus Rhizosphere | TVLAKAREMIAIARPDTLVGMFSFGGLQHEQVMRSIELFATKVIPALGM |
Ga0207690_112758591 | 3300025932 | Corn Rhizosphere | ARPDTLVGMFSFGGLQHEQVMRSIELFATKVIPALGM |
Ga0207706_116027881 | 3300025933 | Corn Rhizosphere | PDSLVGMFSFGGLKHEQVMHSIDLFATKVMPALGA |
Ga0207651_114168581 | 3300025960 | Switchgrass Rhizosphere | VLAKAREMIAIARPDTLVGMFSFGGLQHEQVMRSIELFATKVIPALGM |
Ga0207651_118982571 | 3300025960 | Switchgrass Rhizosphere | ETVVKKAREMIETARPDCLVGMFSFGGLSHAQVMHSIDLFAKKVMPALRENS |
Ga0207708_115281182 | 3300026075 | Corn, Switchgrass And Miscanthus Rhizosphere | TVLKKARSMIETAKPDSLVGMFSFGGLKHEQVMHSIELFAAKVMPALGA |
Ga0207674_115726831 | 3300026116 | Corn Rhizosphere | KKARSMIETAKPDSLVGMFSFGGLKHEQVMHSIELFAAKVMPALGA |
Ga0207675_1019373782 | 3300026118 | Switchgrass Rhizosphere | NTVIKKARVMIESARPDSLVGMFSFGGLKHEQVMHSIDLFATKVMPALGA |
Ga0256821_10105271 | 3300026452 | Sediment | VVKKAREIIATARPDCLVGMFSFGGLSHAQVTRSIELFGTQVMPRLRAEPLG |
Ga0209808_11217853 | 3300026523 | Soil | ETARPDCLVGMFSFGGLSHEQVMRSIELFATKVKPFLDGI |
Ga0209846_10214382 | 3300027277 | Groundwater Sand | TVIKKARSMIETAKPDSLVGMFSFGGLSHEQVMRSIELFGTKVMPALGV |
Ga0208685_10854452 | 3300027513 | Soil | VIKKARAMIETARPDSLVGMFSFGGLSHQQVTRSIELFATKVMPALGA |
Ga0209998_100137463 | 3300027717 | Arabidopsis Thaliana Rhizosphere | VATARPDCLVGMFSFGGLKHEQVMRSIELFATKVMPALGS |
Ga0209819_100052541 | 3300027722 | Freshwater Sediment | KARAMIETARPDSLVGMFSFGGLNHAQVTRSIELFGTKVMPALGA |
Ga0209515_106466502 | 3300027835 | Groundwater | DSLVGIFSFGGLSHAQVIRSLELFATRVIPALADESVGP |
Ga0209814_100352161 | 3300027873 | Populus Rhizosphere | PETVIKKARSMIETARPDSLVGMFSFGGLSHEQVMRSIELFATKVMPALGA |
Ga0209465_101310143 | 3300027874 | Tropical Forest Soil | TARPDSLVGMFSFGGLSHEQVMRSIELFGTKVMPALGA |
Ga0209481_105127302 | 3300027880 | Populus Rhizosphere | TVIKKARSMIETARPDSLVGMFSFGGLSHEQVMRSIELFATKVMPALGA |
Ga0207428_106024982 | 3300027907 | Populus Rhizosphere | IAIARPDTLVGMFSFGGLRHEQVMRSIELFATKVMPALGM |
Ga0307312_103267801 | 3300028828 | Soil | ETARPDTLVGMFSFGGLHHEQVMHSIELFATKVIPALGA |
Ga0302046_104374841 | 3300030620 | Soil | MARPDCLVGLFSFGGQSHAQVTRSIELFATRVMPFLAD |
Ga0310907_107903352 | 3300031847 | Soil | LIGSPQTVLAKTRAMIETAKPDSLVGMFSFGGLSHDQVTRSIELFANKVRPALGL |
Ga0307410_107062671 | 3300031852 | Rhizosphere | MIETAKPDSLVGMFSFGGLSHDQVTRSIELFATEVRPALGS |
Ga0307406_120484282 | 3300031901 | Rhizosphere | IGSPHTVIKKARMMIAMARPDSLVGMFQFGGLKHEQVMHSIELFGAKVMPALGA |
Ga0307412_104932191 | 3300031911 | Rhizosphere | HTVIKKARMMIAMARPDSLVGMFQFGGLKHEQVMHSIELFGAKVMPALGA |
Ga0306921_104040183 | 3300031912 | Soil | AREMIAIARPDTLVGMFSFGGLRHEQVMHSIELFATKVMPALGM |
Ga0310909_105633182 | 3300031947 | Soil | TSLISSPQTVLAKAREMIAIARPDTLVGMFSFGGLRHEQVMHSIELFATKVMPALGM |
Ga0326597_100105436 | 3300031965 | Soil | MIATAKPDSLVGMFSFGGCLSHEQVMRSIELFATKVMPGLAG |
Ga0326597_100160167 | 3300031965 | Soil | MRSWFVLEMIETAKPDSLVSMFSFGGLSHEQVMRSIELFATEVMPALGG |
Ga0326597_103412151 | 3300031965 | Soil | DTVVKKARAMIETARPDSLVGMFSFGGLKHEQVMHSLELFGGKVMPALGA |
Ga0326597_110833482 | 3300031965 | Soil | VLETIATAKPDSLVGMFSFGGLSHEQVIRSIELFATKVMPGLGG |
Ga0307409_1005135581 | 3300031995 | Rhizosphere | DEWGTSLIGSPHTVIKKARMMIAMARPDSLVGMFQFGGLKHEQVMHSIELFGAKVMPALG |
Ga0310899_102455752 | 3300032017 | Soil | TVIEKVREVIAIARPDTLVGMFSFGGLQHQQVMRSIENFGTKVIPALGM |
Ga0335080_111179032 | 3300032828 | Soil | PETVIEKARAMIETARPDCLVGMFSFGGLSHEQVMRSIELFATTVMPAIG |
Ga0316619_122177592 | 3300033414 | Soil | ETVIKKARAMMATAKPDSLVGMFQFGGLKHEQVMHSLELFGTKVMPALGT |
Ga0247830_108250022 | 3300033551 | Soil | AREMIAIARPDTLVGMFSFGGLQHQQVMRSIENFGTKVIPALGM |
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