NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F102087

Metagenome / Metatranscriptome Family F102087

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F102087
Family Type Metagenome / Metatranscriptome
Number of Sequences 102
Average Sequence Length 57 residues
Representative Sequence MDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAVRSLIDDLKETLHMDDIDE
Number of Associated Samples 80
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 74.51 %
% of genes near scaffold ends (potentially truncated) 71.57 %
% of genes from short scaffolds (< 2000 bps) 85.29 %
Associated GOLD sequencing projects 70
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (92.157 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(36.274 % of family members)
Environment Ontology (ENVO) Unclassified
(77.451 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(96.078 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78
1DelMOSum2010_100377166
2DelMOSum2011_100443842
3DelMOSum2011_100564072
4DelMOSpr2010_100130602
5DelMOSpr2010_100808822
6DelMOSpr2010_102585632
7JGI24006J15134_100024498
8JGI25132J35274_10010048
9Ga0065861_11359532
10Ga0075462_100259072
11Ga0075462_100818922
12Ga0075462_100901271
13Ga0075466_10063943
14Ga0075466_10461943
15Ga0075466_11112062
16Ga0075466_11144162
17Ga0098054_10573991
18Ga0098055_11709451
19Ga0070749_105749262
20Ga0075467_100378781
21Ga0075467_104985371
22Ga0075467_105130782
23Ga0070750_103878262
24Ga0098050_10048497
25Ga0098041_10636621
26Ga0098041_11558561
27Ga0075468_101933082
28Ga0075460_102705402
29Ga0075463_101299681
30Ga0070747_11874912
31Ga0070745_12871992
32Ga0099851_11729942
33Ga0099849_11308921
34Ga0075480_103257942
35Ga0075480_103822181
36Ga0114898_10067233
37Ga0115549_10510751
38Ga0115552_12785621
39Ga0115545_13257731
40Ga0115546_10537311
41Ga0115560_10958351
42Ga0098049_12215831
43Ga0098059_10520921
44Ga0129324_103750252
45Ga0136549_101087921
46Ga0151669_1069301
47Ga0151677_10324293
48Ga0182045_10407122
49Ga0182049_10458561
50Ga0181404_11175152
51Ga0181404_11213372
52Ga0181415_10690761
53Ga0181428_10355591
54Ga0181421_10170871
55Ga0181409_10787481
56Ga0181413_11315201
57Ga0187221_10489263
58Ga0181386_10379933
59Ga0181386_10387091
60Ga0181423_10980423
61Ga0181559_101387043
62Ga0181562_101222373
63Ga0194029_10289233
64Ga0181555_11006462
65Ga0211652_100926572
66Ga0213862_100141592
67Ga0206123_101800743
68Ga0213861_103318712
69Ga0213861_105110771
70Ga0222718_100285421
71Ga0222718_100568777
72Ga0222718_101077312
73Ga0212029_10200121
74Ga0212029_10451312
75Ga0212024_10716622
76Ga0212021_10129225
77Ga0224906_12068552
78Ga0196887_10261411
79Ga0196887_10893742
80Ga0196891_10448131
81Ga0196891_10454971
82Ga0196901_10511574
83Ga0255775_10153809
84Ga0255753_11432061
85Ga0255769_100684523
86Ga0232123_10024636
87Ga0207896_10556732
88Ga0208919_10625763
89Ga0208919_10819191
90Ga0209336_100030767
91Ga0209645_100087016
92Ga0208182_10195872
93Ga0208148_10891672
94Ga0208134_10865821
95Ga0208134_11266602
96Ga0209653_11141772
97Ga0208427_11278332
98Ga0208425_10467941
99Ga0208542_11390201
100Ga0208645_12915952
101Ga0307488_101200213
102Ga0314858_112296_2_157
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 79.69%    β-sheet: 0.00%    Coil/Unstructured: 20.31%
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Variant

51015202530354045505560MDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAVRSLIDDLKETLHMDDIDESequenceα-helicesβ-strandsCoilSS Conf. score
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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
7.8%92.2%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Freshwater
Marine
Deep Ocean
Marine
Aqueous
Seawater
Sackhole Brine
Freshwater To Marine Saline Gradient
Marine
Sea-Ice Brine
Marine
Salt Marsh
Marine
Estuarine Water
Pelagic Marine
Seawater
Marine
Seawater
Marine Methane Seep Sediment
13.7%36.3%2.9%8.8%2.9%4.9%5.9%11.8%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2010_1003771663300000101MarineMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAFRSLIDDLKETLHMDDIDE*
DelMOSum2011_1004438423300000115MarineMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAFAHS*
DelMOSum2011_1005640723300000115MarineMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAVRSLIDDLKETLHMDDIDE*
DelMOSpr2010_1001306023300000116MarineMXXVKLAEYFFXTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAFRSLTDDLKETLHMGDIDE*
DelMOSpr2010_1008088223300000116MarineMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAVRSLIDDLKETLHMDDIDE*QSRRK
DelMOSpr2010_1025856323300000116MarineAMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAIRSLIDDLKETLHMDDIDE*
JGI24006J15134_1000244983300001450MarineMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEEYKYHMGALSAVRSLIDDLKETLHMDDIDE*
JGI25132J35274_100100483300002483MarineMDSVKLAEYFFKNLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAIRSLIEDLKETLHMDNIDE*
Ga0065861_113595323300004448MarineAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAFRSLTDDLKETLHMGDIDE*
Ga0075462_1002590723300006027AqueousMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAIRSLIDDLKETLHMDDIDE*
Ga0075462_1008189223300006027AqueousMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAVRSLIDDLKE
Ga0075462_1009012713300006027AqueousMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSA
Ga0075466_100639433300006029AqueousMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAFRSLTDDLKETLHMGDIDE*
Ga0075466_104619433300006029AqueousMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAFRSLIDDLKETLHM
Ga0075466_111120623300006029AqueousMDSVKLAEYFFKILRKREQDLVDSLSAGNVQSMEDYKYHMGALSAVRSLIDDLKETLHMDDIDE*
Ga0075466_111441623300006029AqueousMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSALRSLIDDLKETLHMDDIDE*
Ga0098054_105739913300006789MarineMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAFR
Ga0098055_117094513300006793MarineMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAF
Ga0070749_1057492623300006802AqueousMDSVKLAEYFFKILRKREQDLVDSLSAGNVQSMEDYKYHMGALSAVRSLIDDL
Ga0075467_1003787813300006803AqueousKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAVRSLIDDLKETLHMDDIDE
Ga0075467_1049853713300006803AqueousKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAFRSLIDDLKETLHMDDIDE
Ga0075467_1051307823300006803AqueousMDSVKLAEYFFKILRKREQDLVDSLSAGNVQSMEDYKYHMGALSAVRSLI
Ga0070750_1038782623300006916AqueousMDSVKLAEYFFKILRKREQDLVDSLSAGNVQSMEDYKYHMGALSAVR
Ga0098050_100484973300006925MarineMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAVRSL
Ga0098041_106366213300006928MarineMDSVKLAEYLFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAVRS
Ga0098041_115585613300006928MarineMDSAKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAVRSLIDDLKETLHMD
Ga0075468_1019330823300007229AqueousHRQERAMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAVRSLIDDLKETLHMDDIDE*
Ga0075460_1027054023300007234AqueousLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAVRSLIDDLKETLHMDDIDE*
Ga0075463_1012996813300007236AqueousMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALS
Ga0070747_118749123300007276AqueousMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAFRSLIDDL
Ga0070745_128719923300007344AqueousMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGA
Ga0099851_117299423300007538AqueousMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKY
Ga0099849_113089213300007539AqueousVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAVRSLIDDLKETLHMDDIDE*
Ga0075480_1032579423300008012AqueousMDSVKLAEYFFKILRKREQDLVDSLSAGNVQSMEDYKYHMGALSAVRSL
Ga0075480_1038221813300008012AqueousMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAFRSLIDDLKETLHMD
Ga0114898_100672333300008216Deep OceanMDSIKLAEYFFKALRKREQDLVDSLSAGNVQSMEDYKYHMGALSAIRSLIDDLKETLHMDDIDE*
Ga0115549_105107513300009074Pelagic MarineQERAMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAVRSLIDDLKETLHMDDIDE*
Ga0115552_127856213300009077Pelagic MarineMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAFRSLIDDLKET
Ga0115545_132577313300009433Pelagic MarineQERAMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAFRSLIDDLKETLHMDDIDE*
Ga0115546_105373113300009435Pelagic MarineMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAIRSLIDD
Ga0115560_109583513300009447Pelagic MarineLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAFRSLIDDLKETLHMDDIDE*
Ga0098049_122158313300010149MarineSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAFRSLIDDLKETLHMDDIDE*
Ga0098059_105209213300010153MarineMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYH
Ga0129324_1037502523300010368Freshwater To Marine Saline GradientFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAVRSLIDDLKETLHMDDIDE*
Ga0136549_1010879213300010389Marine Methane Seep SedimentGLGDVYKRQFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAVRSLIDDLKETLHMDDIDE*
Ga0151669_10693013300011128MarineMDSVKLAEYFFKTLRKRQQDLVDSLSAGNVQSMEDYKYHMGALSAVRSLIDDLKETLHMDDIDE*
Ga0151677_103242933300011258MarineMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSALRSLIDDLKETLHMDDNDE*
Ga0182045_104071223300016726Salt MarshMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAVRSLIDDLKETLHMYDIDE
Ga0182049_104585613300016736Salt MarshDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAVRSLIDDLKETLHMDDIDE
Ga0181404_111751523300017717SeawaterMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGVLSAVRSLIDELKETLHIDDIDE
Ga0181404_112133723300017717SeawaterFCKTLRKREQDLVDSLAAGNVQSMEEYKYHMGALSAVRSLIDDLKETLHMDDIDE
Ga0181415_106907613300017732SeawaterMDSVKLAEYFFKTLSKREQDLVDSLSAGNVQSMEDYKYHMGALSAVRSLIDDLKETLHMDDIDE
Ga0181428_103555913300017738SeawaterAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAVRSLIDDLKETLHMDDIDE
Ga0181421_101708713300017741SeawaterMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSALRSLID
Ga0181409_107874813300017758SeawaterMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYYMGALSAVRSLIDDLKETLHMDDIDE
Ga0181413_113152013300017765SeawaterRAMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAVRSLIDDLKETLHMDDIDE
Ga0187221_104892633300017769SeawaterMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYYMGALSAVRSL
Ga0181386_103799333300017773SeawaterTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSALRSLIDDLKETLHMDDIDE
Ga0181386_103870913300017773SeawaterYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAVRSLIDDLKETLHMDDIDE
Ga0181423_109804233300017781SeawaterQERAMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAVRSLIDDLKETLHMDDIDE
Ga0181559_1013870433300018415Salt MarshMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAVRSLIDDLKETL
Ga0181562_1012223733300019459Salt MarshMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAVRSLIDDLKETLHMD
Ga0194029_102892333300019751FreshwaterSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAFRSLIDDLKETLHMDDIDE
Ga0181555_110064623300020051Salt MarshMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAVRSLIDDLKETLHMDDIDE
Ga0211652_1009265723300020379MarineMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAFRSLIDDLKETLHMDYIDE
Ga0213862_1001415923300021347SeawaterMDSVKLAEYFFKILRKREQDLVDSLSAGNVQSMEDYKYHMGALSAVRSLIDDLKETLHMDDIDE
Ga0206123_1018007433300021365SeawaterMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAFRSLIDDLKETLHMDDIDE
Ga0213861_1033187123300021378SeawaterMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAFRSLIDD
Ga0213861_1051107713300021378SeawaterVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAVRSLIDDLKETLHMDDID
Ga0222718_1002854213300021958Estuarine WaterRQERAMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAVRSLIDDLKETLHMDDIDE
Ga0222718_1005687773300021958Estuarine WaterMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYK
Ga0222718_1010773123300021958Estuarine WaterMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSALRSLIDDLKETLHMDDIDE
Ga0212029_102001213300022063AqueousMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAVRS
Ga0212029_104513123300022063AqueousMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAVRSLI
Ga0212024_107166223300022065AqueousMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAIRSLIDDLKETLHMDDIDE
Ga0212021_101292253300022068AqueousMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAV
Ga0224906_120685523300022074SeawaterMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSALRSL
Ga0196887_102614113300022178AqueousLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAFRSLTDDLKETLHMGDIDE
Ga0196887_108937423300022178AqueousMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAFRSRIDD
Ga0196891_104481313300022183AqueousMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAFRSLIDDLKETLHMDDID
Ga0196891_104549713300022183AqueousMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHM
Ga0196901_105115743300022200AqueousMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAVR
Ga0255775_101538093300022907Salt MarshMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAVRSLIDDLKETLH
Ga0255753_114320613300022926Salt MarshFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAVRSLIDDLKETLHMDDIDE
Ga0255769_1006845233300022927Salt MarshMDSVKLAEYFLKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAVRSLIDDLKETLHMDDIDE
Ga0232123_100246363300023706Salt MarshERAMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAVRSLIDDLKETLHMDDIDE
Ga0207896_105567323300025071MarineMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAFRSLTDDLKETLHMGDIDE
Ga0208919_106257633300025128MarineMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGAL
Ga0208919_108191913300025128MarineMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDY
Ga0209336_1000307673300025137MarineMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEEYKYHMGALSAVRSLIDDLKETLHMDDIDE
Ga0209645_1000870163300025151MarineMDSVKLAEYFFKNLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAIRSLIEDLKETLHMDNIDE
Ga0208182_101958723300025251Deep OceanMDSIKLAEYFFKALRKREQDLVDSLSAGNVQSMEDYKYHMGALSAIRSLIDDLKETLHMDDIDE
Ga0208148_108916723300025508AqueousMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAFRSLTDDLKE
Ga0208134_108658213300025652AqueousMDSVKLAEYFFKILRKREQDLVDSLSAGNVQSMEDYKYHMGALSAVRSLIDDLKET
Ga0208134_112666023300025652AqueousMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAFRSLI
Ga0209653_111417723300025695MarineMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAVRSLID
Ga0208427_112783323300025771AqueousMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAVRSLIDDLKET
Ga0208425_104679413300025803AqueousMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAFRSLIDDLKE
Ga0208542_113902013300025818AqueousMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAVRSLIDDLKETLHM
Ga0208645_129159523300025853AqueousMDSVKLAEYFFKILRKREQDLVDSLSAGNVQSMEDYKYHMG
Ga0307488_1012002133300031519Sackhole BrineMDNVKLAEYFFKTLRQREQDLVDSLSAGNVQSMEDYKYHMGSLSALRSLTDDLKETLHMGDIDE
Ga0314858_112296_2_1573300033742Sea-Ice BrineMDSVKLAEYFFKTLRKREQDLVDSLSAGNVQSMEDYKYHMGALSAFRSLTDD


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