NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F102063

Metagenome / Metatranscriptome Family F102063

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F102063
Family Type Metagenome / Metatranscriptome
Number of Sequences 102
Average Sequence Length 41 residues
Representative Sequence PYIKADTIAQANRIAIQYGLLVLGEIQELEHDDQTKKRTVH
Number of Associated Samples 82
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 100.00 %
% of genes from short scaffolds (< 2000 bps) 90.20 %
Associated GOLD sequencing projects 76
AlphaFold2 3D model prediction Yes
3D model pTM-score0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (74.510 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(25.490 % of family members)
Environment Ontology (ENVO) Unclassified
(75.490 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(90.196 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 52.17%    β-sheet: 0.00%    Coil/Unstructured: 47.83%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.49
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 102 Family Scaffolds
PF03237Terminase_6N 8.82
PF04607RelA_SpoT 0.98
PF01592NifU_N 0.98
PF11651P22_CoatProtein 0.98

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 102 Family Scaffolds
COG0822Fe-S cluster assembly scaffold protein IscU, NifU familyPosttranslational modification, protein turnover, chaperones [O] 0.98


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A74.51 %
All OrganismsrootAll Organisms24.51 %
unclassified Hyphomonasno rankunclassified Hyphomonas0.98 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000116|DelMOSpr2010_c10031606All Organisms → Viruses → Predicted Viral2468Open in IMG/M
3300000116|DelMOSpr2010_c10210621Not Available616Open in IMG/M
3300000116|DelMOSpr2010_c10246463Not Available546Open in IMG/M
3300000117|DelMOWin2010_c10124593Not Available893Open in IMG/M
3300000117|DelMOWin2010_c10247345Not Available523Open in IMG/M
3300001450|JGI24006J15134_10067764All Organisms → cellular organisms → Bacteria1381Open in IMG/M
3300001748|JGI11772J19994_1025725Not Available810Open in IMG/M
3300001955|GOS2237_1053710Not Available896Open in IMG/M
3300002483|JGI25132J35274_1097371Not Available599Open in IMG/M
3300004829|Ga0068515_106303unclassified Hyphomonas → Hyphomonas sp.1509Open in IMG/M
3300004829|Ga0068515_118444Not Available873Open in IMG/M
3300006025|Ga0075474_10212419Not Available590Open in IMG/M
3300006026|Ga0075478_10239301Not Available546Open in IMG/M
3300006027|Ga0075462_10141317Not Available737Open in IMG/M
3300006752|Ga0098048_1061013All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales1172Open in IMG/M
3300006752|Ga0098048_1225673Not Available550Open in IMG/M
3300006752|Ga0098048_1251123Not Available517Open in IMG/M
3300006803|Ga0075467_10280007Not Available894Open in IMG/M
3300006810|Ga0070754_10504797Not Available520Open in IMG/M
3300006867|Ga0075476_10330010Not Available530Open in IMG/M
3300006870|Ga0075479_10387789Not Available540Open in IMG/M
3300006874|Ga0075475_10370217Not Available580Open in IMG/M
3300006916|Ga0070750_10233797Not Available803Open in IMG/M
3300006925|Ga0098050_1093062All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales773Open in IMG/M
3300006925|Ga0098050_1124736Not Available653Open in IMG/M
3300007229|Ga0075468_10217618Not Available551Open in IMG/M
3300007345|Ga0070752_1059371All Organisms → Viruses → Predicted Viral1725Open in IMG/M
3300007345|Ga0070752_1313042Not Available596Open in IMG/M
3300007345|Ga0070752_1328708Not Available577Open in IMG/M
3300007346|Ga0070753_1095484All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales1165Open in IMG/M
3300007346|Ga0070753_1320530Not Available551Open in IMG/M
3300008012|Ga0075480_10454817Not Available623Open in IMG/M
3300009057|Ga0102892_1083295Not Available617Open in IMG/M
3300009543|Ga0115099_10933196Not Available1209Open in IMG/M
3300009599|Ga0115103_1121467Not Available1279Open in IMG/M
3300009599|Ga0115103_1853336Not Available870Open in IMG/M
3300010318|Ga0136656_1223397Not Available626Open in IMG/M
3300010368|Ga0129324_10271605Not Available672Open in IMG/M
3300012520|Ga0129344_1122372Not Available528Open in IMG/M
3300017706|Ga0181377_1092679Not Available527Open in IMG/M
3300017713|Ga0181391_1133582Not Available553Open in IMG/M
3300017717|Ga0181404_1044066All Organisms → Viruses → Predicted Viral1132Open in IMG/M
3300017719|Ga0181390_1084144Not Available874Open in IMG/M
3300017728|Ga0181419_1172662Not Available513Open in IMG/M
3300017735|Ga0181431_1035313Not Available1142Open in IMG/M
3300017743|Ga0181402_1168446Not Available550Open in IMG/M
3300017749|Ga0181392_1013988All Organisms → Viruses → Predicted Viral2597Open in IMG/M
3300017752|Ga0181400_1074058All Organisms → Viruses → Predicted Viral1024Open in IMG/M
3300017753|Ga0181407_1018034All Organisms → Viruses → Predicted Viral1963Open in IMG/M
3300017759|Ga0181414_1181107Not Available547Open in IMG/M
3300017773|Ga0181386_1134076Not Available762Open in IMG/M
3300017773|Ga0181386_1211613Not Available580Open in IMG/M
3300017776|Ga0181394_1271627Not Available504Open in IMG/M
3300017781|Ga0181423_1098807All Organisms → Viruses → Predicted Viral1143Open in IMG/M
3300017783|Ga0181379_1101689All Organisms → Viruses → Predicted Viral1052Open in IMG/M
3300019756|Ga0194023_1126167Not Available522Open in IMG/M
3300020055|Ga0181575_10024292All Organisms → Viruses → Predicted Viral3973Open in IMG/M
3300020185|Ga0206131_10212174Not Available939Open in IMG/M
3300021085|Ga0206677_10053396All Organisms → Viruses → Predicted Viral2086Open in IMG/M
3300021085|Ga0206677_10150852All Organisms → Viruses → Predicted Viral1039Open in IMG/M
3300021185|Ga0206682_10076755All Organisms → Viruses → Predicted Viral1721Open in IMG/M
3300021368|Ga0213860_10148954All Organisms → Viruses1031Open in IMG/M
3300021373|Ga0213865_10450680Not Available559Open in IMG/M
3300021389|Ga0213868_10604078Not Available573Open in IMG/M
3300021425|Ga0213866_10059823All Organisms → Viruses2140Open in IMG/M
3300021425|Ga0213866_10077951All Organisms → Viruses → Predicted Viral1833Open in IMG/M
3300021957|Ga0222717_10621333Not Available563Open in IMG/M
3300021957|Ga0222717_10642638Not Available550Open in IMG/M
3300021959|Ga0222716_10053352All Organisms → Viruses → Predicted Viral2858Open in IMG/M
3300021959|Ga0222716_10190297Not Available1307Open in IMG/M
3300021959|Ga0222716_10428332Not Available761Open in IMG/M
3300021959|Ga0222716_10626844Not Available582Open in IMG/M
3300022067|Ga0196895_1021955Not Available712Open in IMG/M
3300022071|Ga0212028_1063229Not Available693Open in IMG/M
3300022158|Ga0196897_1018257Not Available860Open in IMG/M
3300022200|Ga0196901_1265856Not Available527Open in IMG/M
3300022369|Ga0210310_1037235Not Available518Open in IMG/M
3300023105|Ga0255782_10098589Not Available1555Open in IMG/M
3300023178|Ga0255759_10812966Not Available501Open in IMG/M
(restricted) 3300023210|Ga0233412_10418020Not Available601Open in IMG/M
(restricted) 3300024243|Ga0233436_1223416Not Available518Open in IMG/M
3300025079|Ga0207890_1009245All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales2115Open in IMG/M
3300025079|Ga0207890_1061093Not Available619Open in IMG/M
3300025137|Ga0209336_10113103Not Available752Open in IMG/M
3300025137|Ga0209336_10185092Not Available523Open in IMG/M
3300025151|Ga0209645_1229427Not Available530Open in IMG/M
3300025610|Ga0208149_1001626All Organisms → Viruses8217Open in IMG/M
3300025671|Ga0208898_1183236Not Available526Open in IMG/M
3300025769|Ga0208767_1248498Not Available558Open in IMG/M
3300025870|Ga0209666_1362155Not Available551Open in IMG/M
3300026187|Ga0209929_1101854Not Available745Open in IMG/M
3300027234|Ga0208170_1007850All Organisms → Viruses → Predicted Viral2594Open in IMG/M
3300027572|Ga0208964_1099292All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria638Open in IMG/M
3300027751|Ga0208304_10119940Not Available981Open in IMG/M
3300027757|Ga0208671_10323035Not Available542Open in IMG/M
3300028196|Ga0257114_1179327Not Available796Open in IMG/M
3300029448|Ga0183755_1008407All Organisms → Viruses → Predicted Viral4324Open in IMG/M
3300031626|Ga0302121_10193980Not Available577Open in IMG/M
3300032136|Ga0316201_10467111Not Available1084Open in IMG/M
3300032277|Ga0316202_10494626Not Available574Open in IMG/M
3300034374|Ga0348335_127736Not Available739Open in IMG/M
3300034418|Ga0348337_173440Not Available574Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous25.49%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater14.71%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine13.73%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water5.88%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater4.90%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine4.90%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine4.90%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine3.92%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine2.94%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater2.94%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh2.94%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater1.96%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient1.96%
Marine WaterEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Water1.96%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater0.98%
MarineEnvironmental → Aquatic → Marine → Inlet → Unclassified → Marine0.98%
Microbial MatEnvironmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat0.98%
Worm BurrowEnvironmental → Aquatic → Marine → Coastal → Sediment → Worm Burrow0.98%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater0.98%
Pond WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water0.98%
Saline Water And SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment0.98%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000116Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010EnvironmentalOpen in IMG/M
3300000117Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010EnvironmentalOpen in IMG/M
3300001450Marine viral communities from the Pacific Ocean - LP-53EnvironmentalOpen in IMG/M
3300001748Saline surface water microbial communities from Etoliko Lagoon, Greece - surface water (0 m)EnvironmentalOpen in IMG/M
3300001955Marine microbial communities from Gulf of Panama, Panama - GS021EnvironmentalOpen in IMG/M
3300002483Marine viral communities from the Pacific Ocean - ETNP_6_30EnvironmentalOpen in IMG/M
3300004829Marine water microbial communities from the Pohang Bay, Korea with extracellular vesicles - Pohang-EVsEnvironmentalOpen in IMG/M
3300006025Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006026Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006027Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNAEnvironmentalOpen in IMG/M
3300006752Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaGEnvironmentalOpen in IMG/M
3300006803Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNAEnvironmentalOpen in IMG/M
3300006810Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01EnvironmentalOpen in IMG/M
3300006867Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_DNAEnvironmentalOpen in IMG/M
3300006870Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNAEnvironmentalOpen in IMG/M
3300006874Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNAEnvironmentalOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300006925Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaGEnvironmentalOpen in IMG/M
3300007229Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNAEnvironmentalOpen in IMG/M
3300007345Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30EnvironmentalOpen in IMG/M
3300007346Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31EnvironmentalOpen in IMG/M
3300008012Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_DNAEnvironmentalOpen in IMG/M
3300009057Estuarine microbial communities from the Columbia River estuary - metaG 1553A-3EnvironmentalOpen in IMG/M
3300009543Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_20Mar14_M2_3um Metatranscriptome (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300009599Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_5May14_M1_3um Metatranscriptome (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010318Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.8_DNAEnvironmentalOpen in IMG/M
3300010368Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.2_DNAEnvironmentalOpen in IMG/M
3300012520Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.2_RNA2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300017706Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaGEnvironmentalOpen in IMG/M
3300017713Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11EnvironmentalOpen in IMG/M
3300017717Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 27 SPOT_SRF_2011-10-25EnvironmentalOpen in IMG/M
3300017719Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21EnvironmentalOpen in IMG/M
3300017728Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 42 SPOT_SRF_2013-04-24EnvironmentalOpen in IMG/M
3300017735Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 54 SPOT_SRF_2014-05-21EnvironmentalOpen in IMG/M
3300017743Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 25 SPOT_SRF_2011-08-17EnvironmentalOpen in IMG/M
3300017749Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15EnvironmentalOpen in IMG/M
3300017752Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 23 SPOT_SRF_2011-06-22EnvironmentalOpen in IMG/M
3300017753Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 30 SPOT_SRF_2012-01-26EnvironmentalOpen in IMG/M
3300017759Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 37 SPOT_SRF_2012-11-28EnvironmentalOpen in IMG/M
3300017773Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 9 SPOT_SRF_2010-03-24EnvironmentalOpen in IMG/M
3300017776Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 17 SPOT_SRF_2010-11-23EnvironmentalOpen in IMG/M
3300017781Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 46 SPOT_SRF_2013-08-14EnvironmentalOpen in IMG/M
3300017783Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 2 SPOT_SRF_2009-07-10EnvironmentalOpen in IMG/M
3300019756Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW6Sep16_MGEnvironmentalOpen in IMG/M
3300020055Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101411CT metaG (spades assembly)EnvironmentalOpen in IMG/M
3300020185Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1EnvironmentalOpen in IMG/M
3300021085Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015EnvironmentalOpen in IMG/M
3300021185Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015EnvironmentalOpen in IMG/M
3300021368Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550EnvironmentalOpen in IMG/M
3300021373Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282EnvironmentalOpen in IMG/M
3300021389Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127EnvironmentalOpen in IMG/M
3300021425Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284EnvironmentalOpen in IMG/M
3300021957Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18DEnvironmentalOpen in IMG/M
3300021959Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13DEnvironmentalOpen in IMG/M
3300022067Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v3)EnvironmentalOpen in IMG/M
3300022071Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v2)EnvironmentalOpen in IMG/M
3300022158Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v3)EnvironmentalOpen in IMG/M
3300022200Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300022369Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Washington, United States ? R1119 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300023105Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101408AT metaGEnvironmentalOpen in IMG/M
3300023178Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101404AT metaGEnvironmentalOpen in IMG/M
3300023210 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MGEnvironmentalOpen in IMG/M
3300024243 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_150_MGEnvironmentalOpen in IMG/M
3300025079Marine viral communities from the Pacific Ocean - LP-48 (SPAdes)EnvironmentalOpen in IMG/M
3300025137Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)EnvironmentalOpen in IMG/M
3300025151Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)EnvironmentalOpen in IMG/M
3300025610Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025671Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)EnvironmentalOpen in IMG/M
3300025769Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (SPAdes)EnvironmentalOpen in IMG/M
3300025870Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300026187Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG (SPAdes)EnvironmentalOpen in IMG/M
3300027234Estuarine microbial communities from the Columbia River estuary - metaG 1550A-02 (SPAdes)EnvironmentalOpen in IMG/M
3300027572Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_08_M0_20 (SPAdes)EnvironmentalOpen in IMG/M
3300027751Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713 (SPAdes)EnvironmentalOpen in IMG/M
3300027757Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.759 (SPAdes)EnvironmentalOpen in IMG/M
3300028196Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI112_10mEnvironmentalOpen in IMG/M
3300029448Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082EnvironmentalOpen in IMG/M
3300031626Marine microbial communities from Western Arctic Ocean, Canada - CB21_surfaceEnvironmentalOpen in IMG/M
3300032136Coastal sediment microbial communities from Delaware Bay, Delaware, United States - CS-6 worm burrowEnvironmentalOpen in IMG/M
3300032277Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotiteEnvironmentalOpen in IMG/M
3300034374Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v4)EnvironmentalOpen in IMG/M
3300034418Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v4)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSpr2010_1003160613300000116MarineAIGPYIKAHTVAEANRIAIQYGLLVLGEIQELEHDDQTKKRIVH*
DelMOSpr2010_1021062133300000116MarineGPYIKAETVGEANRIAIQYGLLVLGEIQELQHENIETKRTVH*
DelMOSpr2010_1024646333300000116MarineAIGPYIKAHTVAEANRIAIQYGLLVLGEIQELEHETELKKKVVH*
DelMOWin2010_1012459353300000117MarineGAAIGPYIKADTVAEANRIAIQYGLLVLGEIQELQHDTKVKERTLH*
DelMOWin2010_1024734533300000117MarineIGPYIKADTIAQANRIAIQYGLLVLGEIQELEHDDHTRKRTVH*
JGI24006J15134_1006776413300001450MarineGPYIKADTVAQANRIAIQYGLLVLGEIQELEYSNEEEKRIVH*
JGI11772J19994_102572513300001748Saline Water And SedimentYIKAETVAEANRIAIQYGLLVLGEIQELQHDTTIKKTIH*
GOS2237_105371013300001955MarineAAIGPYIKAETVAEANRIAIQYGLLVLGEIQELQHDTTVKKRTVH*
JGI25132J35274_109737113300002483MarineAIGPYIKADTVAEANRIAIQYGLLVLGEIQELQHDTTVKKRTVH*
Ga0068515_10630373300004829Marine WaterAIGPYIKADTVAEANRIAIQYGLLVLGEIQELQHEVKLEERKLH*
Ga0068515_11844413300004829Marine WaterIGPYIKAETVAEANRIAIQYGLLVLGEIQELQHDTTVKKRTVH*
Ga0075474_1021241913300006025AqueousGAAIGPYIKADTIAQANRIAIQYGLLVLGEIQELEHEVELKKKVVH*
Ga0075478_1023930133300006026AqueousAIGPYIKADTIAQANRIAIQYGLLVLGEIQELEHDDHTRKRTVH*
Ga0075462_1014131743300006027AqueousIKADTVAEANRIAIQYGLLVLGEIQELQHDTTVKKRTVH*
Ga0098048_106101353300006752MarineIKADTIAQANRIAIQYGLLVLGEIQELEHDDQTKKRTIH*
Ga0098048_122567313300006752MarineKADTIAQANRIAIQYGLLVLGEIQELEHDDQTKKRTVH*
Ga0098048_125112313300006752MarineIKADTIAQASRIAIQYGLLVLGEIQELQHNEQELKKVVH*
Ga0075467_1028000713300006803AqueousTDQGASIGPYIKADTIAQANRIAIQYGLLVLGEIQELEHEVELKERTVH*
Ga0070754_1050479723300006810AqueousGPYIKAETVGEANRIAIQYGLLVLGEIQELQHDTTVKKRTLH*
Ga0075476_1033001013300006867AqueousETVAEANRIAIQYGLLVLGEIQELQHDIQLEERKVH*
Ga0075479_1038778913300006870AqueousIGPYIKADTIAQANRIAIQYGLLVLGEIQELEHEVELKKKVVH*
Ga0075475_1037021713300006874AqueousGAAIGPYIKADTIAQANRIAIQYGLLVLGEIQELEHEVELEKKLVH*
Ga0070750_1023379743300006916AqueousGIGLGPYIKAETVGEANRIAIQYGLLVLGEIQELQHEVKLEKRVVH*
Ga0098050_109306213300006925MarineSIGPYIKADTIAKASRIAIQYGLLVLGEIQELQHNEQELKKVVH*
Ga0098050_112473613300006925MarineTIAQASRIAIQYGLLVLGEIQELQHNEQELKKVVH*
Ga0075468_1021761813300007229AqueousNEDGAAIGPYIKADTIAQANRIAIQYGLLVLGEIQELEHDDQTKKRTVH*
Ga0070752_105937113300007345AqueousIKADTVAQANRIAIQYGLLVLGEIQELEHEVELEKKLVH*
Ga0070752_131304213300007345AqueousKAETVGEANRIAIQYGLLVLGEIQELQHDTTVKKRTLH*
Ga0070752_132870813300007345AqueousADTIAQASRIAIQYGLLVLGEIQELQHNEQELKKVVH*
Ga0070753_109548413300007346AqueousIGPYIKADTIAKASRIAIQYGLLVLGEIQELQHEEQEIKKIVH*
Ga0070753_132053013300007346AqueousPYIKAETVAEANRIAIQYGLLVLGEIQELQHDTTVKKRTLH*
Ga0075480_1045481733300008012AqueousPYIKAETVGEANRIAIQYGLLVLGEIQELQHDTTVKKRTLH*
Ga0102892_108329513300009057EstuarineDTIAQASRIAIQYGLLVLGEIQELQHEEQEIKRLVH*
Ga0115099_1093319613300009543MarineEGSAIGPYIKADTIAQANRIAIQYGLLVLGEIQELQHDIQLEERKVH*
Ga0115103_112146713300009599MarineAHTVAEANRIAIQYGLLVLGEIQELEHDDQTKKRIVH*
Ga0115103_185333613300009599MarineIGPYIKAHTVAEANRIAIQYGLLVLGEIQELEHDDQTKKRTVH*
Ga0136656_122339733300010318Freshwater To Marine Saline GradientVGEANRIAIQYGLLVLGEIQELQHDTTVKKRVVH*
Ga0129324_1027160533300010368Freshwater To Marine Saline GradientYIKAETVGEANRIAIQYGLLVLGEIQELQHEVKLEKKTVH*
Ga0129344_112237223300012520AqueousLGPYIKADTVAEANRIAIQYGLLVLGEIQELQHDTTVKKRVVH*
Ga0181377_109267913300017706MarineYIKADTIAQANRIAIQYGLLVLGEIQELEHDDQTKKRTIH
Ga0181391_113358233300017713SeawaterAHTVAEANRIAIQYGLLVLGEIQELEHDDQTKKRIVH
Ga0181404_104406653300017717SeawaterGPYIKANTVAEANRIAIQYGLLVLGEIQELEHDDQTKKRTVH
Ga0181390_108414443300017719SeawaterEGIAIGPYIKADTIAQASRIAIQYGLLVLGEIQELQHEEQEIKKIVH
Ga0181419_117266233300017728SeawaterPYIKADTIAQANRIAIQYGLLVLGEIQELQHDTQLEKRIVH
Ga0181431_103531313300017735SeawaterNTVAEANRIAIQYGLLVLGEIQELEHDDQTKKRIVH
Ga0181402_116844633300017743SeawaterIKADTIAQANRIAIKYGLLVLGEIQELEQDDQTKKRTVH
Ga0181392_101398813300017749SeawaterYIKADTVAQANRIAIQYGLLVLGEIQELEHEVELEKKVVH
Ga0181400_107405813300017752SeawaterADTVAQANRIAIQYGLLVLGEIQELEHEIELEKKLVH
Ga0181407_101803413300017753SeawaterTVAEANRIAIQYGLLVLGEIQELEHDDQTKKRIVH
Ga0181414_118110713300017759SeawaterDGAAIGPYIKADTIAQANRIAIQYGLLVLGEIQELEHDDQTKKRTVH
Ga0181386_113407613300017773SeawaterAIGPYIKADTIAQASRIAIQYGLLVLGEIQELQHEEQEIKKIVH
Ga0181386_121161333300017773SeawaterAIGPYIKADTIAQASRIAIQYGLLVLGEIQELQHEEQEIKRLVH
Ga0181394_127162713300017776SeawaterYIKADTIAQANRIAIQYGLLVLGEIQELQHDIQLEERKVH
Ga0181423_109880713300017781SeawaterKANTVAEANRIAIQYGLLVLGEIQELEHDDQTKKRTVH
Ga0181379_110168913300017783SeawaterANTVAEANRIAIQYGLLVLGEIQELEHDDQTKKRIVH
Ga0194023_112616723300019756FreshwaterIKANTVAEANRIAIQYGLLVLGEIQELEHEVKIKERTVH
Ga0181575_1002429283300020055Salt MarshTSLGPYIKAETVGEANRIAIQYGLLVLGEIQELQHDIQLEERTVH
Ga0206131_1021217413300020185SeawaterSSIGPYIKADTVAQANRIAIQYGLLVLGEIQELQHDEPIQKRMIH
Ga0206677_1005339613300021085SeawaterIGPYIKANTVAEANRIAIQYGLLVLGEIQELEHDDQTKKRIVH
Ga0206677_1015085213300021085SeawaterGAAIGPYIKADTVAEANRIAIQYGLLVLGEIQELQHDIQLEERKVH
Ga0206682_1007675513300021185SeawaterKANTVAEANRIAIQYGLLVLGEIQELEHDDQTKKRIVH
Ga0213860_1014895453300021368SeawaterKADTIAQASRIAIQYGLLVLGEIQELQHNEQELKKVVH
Ga0213865_1045068013300021373SeawaterDAHEGVAIGPYIKADTIAQASRIAIQYGLLVLGEIQELQHNEQELKKVIH
Ga0213868_1060407833300021389SeawaterYIKADTVAEANRIAIQYGLLVLGEIQELQHDTKVKERTLH
Ga0213866_1005982373300021425SeawaterADTIAQASRIAIQYGLLVLGEIQELQHNEQELKKVIH
Ga0213866_1007795183300021425SeawaterGTGIGPYIKANTVAEANRIAIQYGLLVLGEIHELEHEVKLEERKVH
Ga0222717_1062133333300021957Estuarine WaterADTIAQASRIAIQYGLLVLGEIQELQHEEQEIKRLVH
Ga0222717_1064263833300021957Estuarine WaterIKADTIAQANRIAIQYGLLVLGEIQELQHDTQLEERKVH
Ga0222716_1005335273300021959Estuarine WaterYIKAHTVAEANRIAIQYGLLVLGEIQELEHDDQTKKRTVH
Ga0222716_1019029763300021959Estuarine WaterGIAIGPYIKADTIAQASRIAIQYGLLVLGEIQELQHEEQEIKRLVH
Ga0222716_1042833243300021959Estuarine WaterGIAIGPYIKADTIAQASRIAIQYGLLVLGEIQELQHEEQEIKKIVH
Ga0222716_1062684433300021959Estuarine WaterPYIKADTIAQANRIAIQYGLLVLGEIQELEHDDQTKKRTVH
Ga0196895_102195513300022067AqueousPYIKADTVGEANRIAIQYGLLVLGEIQELQHDTKVKERTLH
Ga0212028_106322933300022071AqueousTYIKAETVAEANRIAIQYGLLVLGEIQELQHDTTIKKKTIH
Ga0196897_101825753300022158AqueousYIKAETVGEANRIAIQYGLLVLGEIQELQHDTTIKKKTIH
Ga0196901_126585613300022200AqueousNTVAEANRIAIQYGLLVLGEIHELEHEVKLEKKMVH
Ga0210310_103723533300022369EstuarineEGSAIGPYIKADTIAQANRIAIQYGLMVLGEIQELQHDDSQQKRIVH
Ga0255782_1009858913300023105Salt MarshTLGPYIKAETVGEANRIAIQYGLLVLGEIQELQHDIQLEEKVVH
Ga0255759_1081296623300023178Salt MarshTIAEANRIAIQYGLLVLGEIQELQHDTKVKERVVH
(restricted) Ga0233412_1041802033300023210SeawaterEDGAAIGPYIKAHTVAEANRIAIQYGLLVLGEIQELEHDDQTKKRIVH
(restricted) Ga0233436_122341633300024243SeawaterKADTIAQANRIAIQYGLMVLGEIQELQHDDSQQKRIVH
Ga0207890_100924583300025079MarineGPYIKADTVAQANRIAIQYGLLVLGEIQELEYSNEEEKRIVH
Ga0207890_106109313300025079MarineDTVAQANRIAIQYGLLVLGEIQELEHEIKIEERVVH
Ga0209336_1011310343300025137MarineIGPYIKADNIAQANRIAIQYGLLVLGEIQELEHEIKIEERVVH
Ga0209336_1018509233300025137MarineIGPYIKADNIAQANRIAIQYGLLVLGEIQELEHEIKIEEKVVH
Ga0209645_122942723300025151MarineKADTVAEANRIAIQYGLLVLGEIQELQHEVKLEKKVVH
Ga0208149_1001626113300025610AqueousPYIKAETVAEANRIAIQYGLLVLGEIQELEHDDHTRKRTVH
Ga0208898_118323613300025671AqueousETVAEANRIAIQYGLLVLGEIQELQHDTTIKKKTIH
Ga0208767_124849813300025769AqueousTVAEANRIAIQYGLLVLGEIQELEHDNQIKKRTVH
Ga0209666_136215523300025870MarineGPYIKAETVGEANRIAIQYGLLVLGEIQELQHDTEVKERVVH
Ga0209929_110185443300026187Pond WaterTVAEANRIAIQYGLLVLGEIQELQHEVKLEERKVH
Ga0208170_100785013300027234EstuarineIAIGPYIKADTIAQASRIAIQYGLLVLGEIQELQHEEQEIKRLVH
Ga0208964_109929213300027572MarinePYIKAHTVAEANRIAIQYGLLVLGEIQELEHDDQTKKRTVH
Ga0208304_1011994013300027751EstuarineAIGPYIKAHTVAEANRIAIQYGLLVLGEIQELEHDDQTKKRIVH
Ga0208671_1032303513300027757EstuarineIKADTVAEANRIAIQYGLLVLGEIQELEHEVKLKERTVH
Ga0257114_117932713300028196MarineYIKAHTVAEANRIAIQYGLLVLGEIQELEHDDQTKKRIVH
Ga0183755_100840713300029448MarineYIKADTVAQANRIAIQYGLLVLGEIQELEHEVELEKKLVH
Ga0302121_1019398033300031626MarineETIAQANRIAIQYGLLVLGEIQELEYEVKLEERIVH
Ga0316201_1046711113300032136Worm BurrowYIKADTVGEANRIAIQYGLLVLGEIQELQHDTKVKERTLH
Ga0316202_1049462613300032277Microbial MatIGPYIKADTIAQANRIAIQYGLLVLGEIQELEHDDQTKKRTVH
Ga0348335_127736_1_1353300034374AqueousAIGPYIKADTIAQANRIAIQYGLLVLGEIQELEHEVELEKKLVH
Ga0348337_173440_455_5743300034418AqueousIKADTIAQANRIAIQYGLLVLGEIQELEHEVELKKKVVH


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