Metagenome / Metatranscriptome Family F102043

Basic Information
Family ID	F102043
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	40 residues
Representative Sequence	VQDRQAPLDVFVGRAAELARMAEVVTRVQAGQPWLVAIEG
Number of Associated Samples	86
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	98.04 %
% of genes near scaffold ends (potentially truncated)	99.02 %
% of genes from short scaffolds (< 2000 bps)	94.12 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Most Common Taxonomy
Group	Unclassified (52.941 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (25.490 % of family members)
Environment Ontology (ENVO)	Unclassified (25.490 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.980 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 23.53% β-sheet: 0.00% Coil/Unstructured: 76.47%
Feature Viewer

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Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF00999	Na_H_Exchanger	7.84
PF00196	GerE	5.88
PF13191	AAA_16	4.90
PF13520	AA_permease_2	3.92
PF01336	tRNA_anti-codon	2.94
PF07690	MFS_1	2.94
PF05239	PRC	1.96
PF13565	HTH_32	1.96
PF01810	LysE	0.98
PF13365	Trypsin_2	0.98
PF00312	Ribosomal_S15	0.98
PF08241	Methyltransf_11	0.98
PF07676	PD40	0.98
PF13714	PEP_mutase	0.98
PF00486	Trans_reg_C	0.98
PF03551	PadR	0.98
PF06496	DUF1097	0.98
PF13561	adh_short_C2	0.98
PF00756	Esterase	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	7.84
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	7.84
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	7.84
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	7.84
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	7.84
COG0184	Ribosomal protein S15P/S13E	Translation, ribosomal structure and biogenesis [J]	0.98
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.98
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.98
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.94 %
All Organisms	root	All Organisms	47.06 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.94 %
cellular organisms	root	All Organisms → cellular organisms	47.06 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.94 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	47.06 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.94 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	42.16 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.94 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	41.18 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.98 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.94 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	28.43 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	3.92 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.98 %
unclassified Firmicutes sensu stricto	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → unclassified Firmicutes sensu stricto	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.94 %
unclassified Acidimicrobiia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia	3.92 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	3.92 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	2.94 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	1.96 %
Firmicutes bacterium R50	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → unclassified Firmicutes sensu stricto → Firmicutes bacterium R50	0.98 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.98 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.98 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.98 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.94 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	3.92 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	3.92 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	2.94 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.96 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.98 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.98 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.98 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.98 %
Firmicutes bacterium R50	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → unclassified Firmicutes sensu stricto → Firmicutes bacterium R50	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.94 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	3.92 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	3.92 %
Lentzea	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Lentzea	2.94 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.96 %
Tenggerimyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Tenggerimyces	0.98 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.98 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.98 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.98 %
Firmicutes bacterium R50	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → unclassified Firmicutes sensu stricto → Firmicutes bacterium R50	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.94 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	3.92 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	3.92 %
Lentzea atacamensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Lentzea → Lentzea atacamensis	2.94 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.96 %
Tenggerimyces flavus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Tenggerimyces → Tenggerimyces flavus	0.98 %
unclassified Streptomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces	0.98 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.98 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.98 %
Firmicutes bacterium R50	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → unclassified Firmicutes sensu stricto → Firmicutes bacterium R50	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.94 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	3.92 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	3.92 %
Lentzea atacamensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Lentzea → Lentzea atacamensis	2.94 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.96 %
Streptomyces sp. ISL-44	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. ISL-44	0.98 %
Tenggerimyces flavus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Tenggerimyces → Tenggerimyces flavus	0.98 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.98 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.98 %
Firmicutes bacterium R50	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → unclassified Firmicutes sensu stricto → Firmicutes bacterium R50	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001461\|JGI12698J15209_1004480	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	779	Open in IMG/M
3300004082\|Ga0062384_100421851	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	865	Open in IMG/M
3300005546\|Ga0070696_100617643	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	875	Open in IMG/M
3300005591\|Ga0070761_11088567	Not Available	509	Open in IMG/M
3300005712\|Ga0070764_10202597	Not Available	1113	Open in IMG/M
3300005921\|Ga0070766_10338960	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	973	Open in IMG/M
3300009176\|Ga0105242_10606271	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → unclassified Firmicutes sensu stricto → Firmicutes bacterium R50	1058	Open in IMG/M
3300009523\|Ga0116221_1033175	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2535	Open in IMG/M
3300009672\|Ga0116215_1482244	Not Available	536	Open in IMG/M
3300010048\|Ga0126373_13191668	Not Available	510	Open in IMG/M
3300010341\|Ga0074045_10263108	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1138	Open in IMG/M
3300010343\|Ga0074044_10855644	Not Available	594	Open in IMG/M
3300010361\|Ga0126378_13359732	Not Available	508	Open in IMG/M
3300010376\|Ga0126381_101543860	Not Available	959	Open in IMG/M
3300010376\|Ga0126381_103857983	Not Available	585	Open in IMG/M
3300010379\|Ga0136449_104238780	Not Available	531	Open in IMG/M
3300010880\|Ga0126350_11743516	Not Available	945	Open in IMG/M
3300012960\|Ga0164301_11228727	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	603	Open in IMG/M
3300014165\|Ga0181523_10560315	Not Available	629	Open in IMG/M
3300016294\|Ga0182041_11139620	Not Available	709	Open in IMG/M
3300017823\|Ga0187818_10438189	Not Available	583	Open in IMG/M
3300017924\|Ga0187820_1275751	Not Available	547	Open in IMG/M
3300017932\|Ga0187814_10347580	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	572	Open in IMG/M
3300017932\|Ga0187814_10364661	Not Available	559	Open in IMG/M
3300017932\|Ga0187814_10445007	Not Available	508	Open in IMG/M
3300017937\|Ga0187809_10106879	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	942	Open in IMG/M
3300017961\|Ga0187778_10236985	Not Available	1169	Open in IMG/M
3300017970\|Ga0187783_10008556	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7510	Open in IMG/M
3300017970\|Ga0187783_10448453	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	936	Open in IMG/M
3300017970\|Ga0187783_10484097	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	897	Open in IMG/M
3300017970\|Ga0187783_11235223	Not Available	538	Open in IMG/M
3300017972\|Ga0187781_11472449	Not Available	505	Open in IMG/M
3300017973\|Ga0187780_10818375	Not Available	674	Open in IMG/M
3300017974\|Ga0187777_10810035	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	669	Open in IMG/M
3300017975\|Ga0187782_10528388	Not Available	903	Open in IMG/M
3300017995\|Ga0187816_10173365	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	936	Open in IMG/M
3300017995\|Ga0187816_10190018	Not Available	892	Open in IMG/M
3300018001\|Ga0187815_10098883	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1230	Open in IMG/M
3300018007\|Ga0187805_10087532	Not Available	1406	Open in IMG/M
3300018042\|Ga0187871_10768200	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	537	Open in IMG/M
3300018085\|Ga0187772_10924292	Not Available	635	Open in IMG/M
3300020581\|Ga0210399_11289234	Not Available	576	Open in IMG/M
3300021088\|Ga0210404_10481578	Not Available	700	Open in IMG/M
3300021170\|Ga0210400_10757862	Not Available	797	Open in IMG/M
3300021181\|Ga0210388_10698113	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	884	Open in IMG/M
3300021388\|Ga0213875_10309559	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	748	Open in IMG/M
3300021402\|Ga0210385_10171523	Not Available	1564	Open in IMG/M
3300021407\|Ga0210383_10066939	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2999	Open in IMG/M
3300021477\|Ga0210398_11358999	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Lentzea → Lentzea atacamensis	556	Open in IMG/M
3300021560\|Ga0126371_12202389	Not Available	665	Open in IMG/M
3300025625\|Ga0208219_1079170	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	768	Open in IMG/M
3300025929\|Ga0207664_11960339	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300027047\|Ga0208730_1003024	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1566	Open in IMG/M
3300027058\|Ga0209111_1007688	All Organisms → cellular organisms → Bacteria	1125	Open in IMG/M
3300027096\|Ga0208099_1003820	Not Available	1802	Open in IMG/M
3300027516\|Ga0207761_1047944	Not Available	832	Open in IMG/M
3300027696\|Ga0208696_1126470	Not Available	837	Open in IMG/M
3300027775\|Ga0209177_10388131	Not Available	556	Open in IMG/M
3300027812\|Ga0209656_10484751	Not Available	542	Open in IMG/M
3300027817\|Ga0209112_10325217	Not Available	546	Open in IMG/M
3300028783\|Ga0302279_10164129	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1084	Open in IMG/M
3300028824\|Ga0307310_10234142	Not Available	877	Open in IMG/M
3300028885\|Ga0307304_10528986	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Lentzea → Lentzea atacamensis	542	Open in IMG/M
3300029999\|Ga0311339_10434772	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1357	Open in IMG/M
3300030524\|Ga0311357_10190730	Not Available	2008	Open in IMG/M
3300031668\|Ga0318542_10519554	Not Available	619	Open in IMG/M
3300031681\|Ga0318572_10073760	All Organisms → cellular organisms → Bacteria → Proteobacteria	1884	Open in IMG/M
3300031681\|Ga0318572_10290849	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	965	Open in IMG/M
3300031718\|Ga0307474_10648049	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	833	Open in IMG/M
3300031718\|Ga0307474_11046566	Not Available	646	Open in IMG/M
3300031720\|Ga0307469_11012712	Not Available	776	Open in IMG/M
3300031751\|Ga0318494_10380421	Not Available	818	Open in IMG/M
3300031765\|Ga0318554_10442208	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	737	Open in IMG/M
3300031771\|Ga0318546_10128395	Not Available	1691	Open in IMG/M
3300031771\|Ga0318546_10288258	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1135	Open in IMG/M
3300031771\|Ga0318546_10799402	Not Available	664	Open in IMG/M
3300031779\|Ga0318566_10424960	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	653	Open in IMG/M
3300031792\|Ga0318529_10496279	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Tenggerimyces → Tenggerimyces flavus	568	Open in IMG/M
3300031799\|Ga0318565_10243789	Not Available	874	Open in IMG/M
3300031805\|Ga0318497_10332683	Not Available	847	Open in IMG/M
3300031897\|Ga0318520_10656921	Not Available	654	Open in IMG/M
3300031945\|Ga0310913_11124988	Not Available	548	Open in IMG/M
3300031954\|Ga0306926_11787362	Not Available	698	Open in IMG/M
3300031962\|Ga0307479_12138309	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Lentzea → Lentzea atacamensis	507	Open in IMG/M
3300032009\|Ga0318563_10255047	Not Available	948	Open in IMG/M
3300032010\|Ga0318569_10033789	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2145	Open in IMG/M
3300032041\|Ga0318549_10196888	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	904	Open in IMG/M
3300032065\|Ga0318513_10495706	Not Available	598	Open in IMG/M
3300032068\|Ga0318553_10312494	All Organisms → cellular organisms → Bacteria	822	Open in IMG/M
3300032076\|Ga0306924_11665175	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	670	Open in IMG/M
3300032261\|Ga0306920_100447425	Not Available	1920	Open in IMG/M
3300032261\|Ga0306920_101832019	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	855	Open in IMG/M
3300032756\|Ga0315742_13294466	Not Available	521	Open in IMG/M
3300032770\|Ga0335085_10890256	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	971	Open in IMG/M
3300032770\|Ga0335085_11757341	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	637	Open in IMG/M
3300032828\|Ga0335080_11802759	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. ISL-44	597	Open in IMG/M
3300032828\|Ga0335080_11921416	Not Available	575	Open in IMG/M
3300032896\|Ga0335075_11256131	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	637	Open in IMG/M
3300032896\|Ga0335075_11336825	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	609	Open in IMG/M
3300033134\|Ga0335073_10007817	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	14991	Open in IMG/M
3300033134\|Ga0335073_11211789	Not Available	756	Open in IMG/M
3300033158\|Ga0335077_11563499	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	629	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.04%
Host-Associated	Host-Associated	1.96%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	84.31%
Aquatic	Environmental → Aquatic	13.73%
Plants	Host-Associated → Plants	1.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.37%
Freshwater	Environmental → Aquatic → Freshwater	13.73%
Peat	Environmental → Terrestrial → Peat	2.94%
Roots	Host-Associated → Plants → Roots	0.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.00%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	20.59%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	13.73%
Loam	Environmental → Terrestrial → Soil → Loam	10.78%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.94%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	35.29%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	20.59%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.75%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	9.80%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.82%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.92%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.96%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.98%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.98%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	25.49%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	9.80%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	9.80%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	8.82%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.90%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.92%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.94%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.96%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.96%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.96%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.98%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.98%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.98%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.98%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.98%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001461	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_O3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021388	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8	Host-Associated	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025625	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-2 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300027047	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF042 (SPAdes)	Environmental	Open in IMG/M
3300027058	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027096	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF043 (SPAdes)	Environmental	Open in IMG/M
3300027516	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 34 (SPAdes)	Environmental	Open in IMG/M
3300027696	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027817	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300028783	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_3	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032756	Forest Soil Metatranscriptomics Site 2 Humus Litter Mineral Combined Assembly	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F102043

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12698J15209_10044801	3300001461	Forest Soil	VGCVQDQQPALGVFVGRTAELGRAGEVIDLVAAGQPWLVSIE
Ga0062384_1004218512	3300004082	Bog Forest Soil	VQGRRVPLDVFVGRAAELAQMAEVVASVETGQPWLVTIEGD
Ga0070696_1006176431	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	VQNRRPPQGVFVGRAAEVARVTEVIARVATGQPWLVAVEGDP
Ga0070761_110885673	3300005591	Soil	MQDRRPPLEVFVGRAAELARVAEVVTRVEAGQPWLVA
Ga0070764_102025972	3300005712	Soil	VQEPPLDLFVGRAAELARVAEVVARVGAGHPWLVAIEGDPGMGKT
Ga0070766_103389601	3300005921	Soil	VRDWQSPADLFVGRAAELEGVAEILRRAADGQPWLVAIEGDPGMGK
Ga0105242_106062711	3300009176	Miscanthus Rhizosphere	VQHRRAPLDVFVGRAAERGQLAGGVAGVEAGQPWLVAIEGDPGVG
Ga0116221_10331751	3300009523	Peatlands Soil	VQDRQPLVDLFVGRAPELARVAEVVTRVEAGQPWLVAVEGDS
Ga0116215_14822442	3300009672	Peatlands Soil	VQDRHVPLDVFVGRAAELARVAEVVTRVEAGQPWL
Ga0126373_131916681	3300010048	Tropical Forest Soil	VLDRQAPPDVFVGREAELARVAEVVTRVEAGQPWLV
Ga0074045_102631082	3300010341	Bog Forest Soil	MQDRQPPLDLFVGRAAERARIAEVVSRAEAGQPWLVAIEGDPGMG
Ga0074044_108556441	3300010343	Bog Forest Soil	MPLDLFVGRAAEATSVAEVVARVEAGQPWLVAIEGDPGVGKTAL
Ga0126378_133597322	3300010361	Tropical Forest Soil	VQDRQAPLEVFIGRAAELARVAEVFARAEAGQPWLV
Ga0126381_1015438601	3300010376	Tropical Forest Soil	VQDRQVPLEVFVGRAAERAQVSEVMSRVAAGQPWLVAIEGDPG
Ga0126381_1038579832	3300010376	Tropical Forest Soil	VLDRQAPPDVFVGREAELARVAEVVTRVEAGQPWLVAIEGD
Ga0136449_1042387801	3300010379	Peatlands Soil	VQDRQVPLDLFVGRAAALASVAEVLTRVEAGQPWLVAIE
Ga0126350_117435162	3300010880	Boreal Forest Soil	MERVQDRQPPLEVFVGRAAELARMAQVVASVETGQPWLVTIEGE
Ga0164301_112287272	3300012960	Soil	VQNRRPPQGVFVGRAAEVARVTEVIARVATGQPWLVAVEG
Ga0181523_105603151	3300014165	Bog	VQYRQPPLEVFVGRAVELAQVAEVIARVEAGQPWLVAIEGDPGV
Ga0182041_111396201	3300016294	Soil	VQDRQAPLDVFVGRAAELARMAEVVTRVQAGQPWLVAIEG
Ga0187818_104381892	3300017823	Freshwater Sediment	VPLDVFVGREAELARVAEVLTRVETGQPWLVAIEGE
Ga0187820_12757512	3300017924	Freshwater Sediment	VQDRRAPLDIFVGREAELDRVAAVVALMESGQPWLVAIEGDPG
Ga0187814_103475801	3300017932	Freshwater Sediment	VPLDVFVGRVAELAQVAEVLTRVEAGQPWLVALEG
Ga0187814_103646613	3300017932	Freshwater Sediment	VQHRRAPLDVFVGRAAELAQVSQVVSRVAAGQPWLVTIEGD
Ga0187814_104450071	3300017932	Freshwater Sediment	VQDRRRPLDPFVGRAAELARVAEIVTRVEAGQPWLVAIEGDPG
Ga0187809_101068791	3300017937	Freshwater Sediment	VPLDAFVGRVGELARVAEVLTRVEAGQPWLVAIEGDPG
Ga0187778_102369851	3300017961	Tropical Peatland	VQDRRPPLEVFVGRAAELAQVSEVVSHVAAGQPWPVAIEGDPGVGK
Ga0187783_100085566	3300017970	Tropical Peatland	VPDRQVPLDVFVGRAAELARVAEVVTRVGAGQPWLVTIEGDP
Ga0187783_104484531	3300017970	Tropical Peatland	MPLDVFVGRAAEMARIAEVVSRVEAGQPWLVAIEGDPG
Ga0187783_104840972	3300017970	Tropical Peatland	MQDRQPPLDVFVGRAAELARVAEVITRVGAGQPWLV
Ga0187783_112352231	3300017970	Tropical Peatland	VQDRQAPLDVFVGRAAELARVAEVVTRMEAGEPWLVAVEG
Ga0187781_114724491	3300017972	Tropical Peatland	VQDRTPPLDVFVGRAAQLARVAEVLARVAAGQPWLV
Ga0187780_108183751	3300017973	Tropical Peatland	VQDRRVPLEVFAGRAAELARIAEVVTRVEAGQPWLVAIEGD
Ga0187777_108100351	3300017974	Tropical Peatland	VRDRQPPLDVFVGRATELARVAEVITRVKAGEPWL
Ga0187782_105283881	3300017975	Tropical Peatland	LQDRQTLLDPFVGRAAELARVAEVMARVEAGQPWLV
Ga0187816_101733652	3300017995	Freshwater Sediment	VQDRRVPLDVFVGRAAEFARVAEVITRVEAGQPWLVAVEGELGMGKT
Ga0187816_101900183	3300017995	Freshwater Sediment	VKDRQPPLEVFVGRAAELARVAEVVTRVEAGQPWLVAIE
Ga0187815_100988833	3300018001	Freshwater Sediment	VQNRQVPFDVFVGRAAELASVAEVLTRVAAGQPWLVAIEGDP
Ga0187805_100875322	3300018007	Freshwater Sediment	VQDRRAPLEAFVGRTAELARMAEVLTRVEAGQPWLVAIEGD
Ga0187871_107682001	3300018042	Peatland	VQDRQVPFDVFVGRTAELASVAEVLARVAAGQPWL
Ga0187772_109242922	3300018085	Tropical Peatland	VRDRQPPLDLFVGRAAELSRVGEIMTRVEAGQPWLIAIEGDPGVGKT
Ga0210399_112892343	3300020581	Soil	VQHRQAPLDLFVGRAAELARVAEVFARVEAGQPWLVAIEG
Ga0210404_104815781	3300021088	Soil	VPDRQVPIDVFVGRAAELARVAEVFARVETGQPWLVAIEGD
Ga0210400_107578622	3300021170	Soil	VQDRPKPLDLFIGRAAELARVAEVISRVEAGQPWLV
Ga0210388_106981132	3300021181	Soil	VPLDVFVGREAEVARVAEVLTRVETGQPWLVAIEGE
Ga0213875_103095591	3300021388	Plant Roots	VQDGQAPLDVFVGRAAELARMAEVVSRVEAGQPWLVAIEGDP
Ga0210385_101715231	3300021402	Soil	VQLRPVPHDVFVGRSAEIARITEVITRVQAGEPWLVAI
Ga0210383_100669391	3300021407	Soil	VQDQQVPLDLFVGRAAALASVAEVLTRVEAGQPWLVAIEGDPG
Ga0210398_113589991	3300021477	Soil	VPEGQPRLGVFVGRAAELAQVTDVIARVQAGQPWLVAIEGDPGVG
Ga0126371_122023892	3300021560	Tropical Forest Soil	MLDRQAPPDVFVGREAELARVAEVVTRVEAGQPWLVAIEGDPGVGK
Ga0208219_10791702	3300025625	Arctic Peat Soil	VQDRQPPLEVFVGRAAELARIAEVVSGVEAGQPWLVTIEGDAGL
Ga0207664_119603391	3300025929	Agricultural Soil	VQDRQPPLGVFVGRAGERAQVAEVSARAETGQPWLIAIEGDPGLGKTTL
Ga0208730_10030241	3300027047	Forest Soil	VQDRLKPLDPFIGRAAELARVAEVISRVEAGQPWLVA
Ga0209111_10076881	3300027058	Forest Soil	MVQDRQVPLDVFVGRTGELARMAEVISWARAGQPWLVNV
Ga0208099_10038202	3300027096	Forest Soil	VRDRQPPLGVFVGRAAELAQVTEVVARVAAGQPWLVA
Ga0207761_10479442	3300027516	Tropical Forest Soil	VRDRQPPLDLFVGRAAELTRVAEIMTRVEAGQPWLIAIEGDPGVGKTAL
Ga0208696_11264702	3300027696	Peatlands Soil	VQDRPVPLDVFVGRVVELALVAEVLTRVEAGQPWLVTIEG
Ga0209177_103881312	3300027775	Agricultural Soil	VRHRRAPLDVFVGRAAERAQVAEVVARVEAGEPWLV
Ga0209656_104847511	3300027812	Bog Forest Soil	VQDRQPPLDLFVGRAAERARIAEVVSRAEAGQPWLVAIEGDPGMG
Ga0209112_103252172	3300027817	Forest Soil	VRDRQMPLDVFVGRAAELGQLAGVLDRVEAGQPWLV
Ga0302279_101641292	3300028783	Bog	VPYGQPQLDLFVGRDAEFARVAEVVTRAKAGQPWLVA
Ga0307310_102341422	3300028824	Soil	VQHRRAPLDVFVGRAAERARVAEVVARVEAGQPWLVAIEGDPG
Ga0307304_105289861	3300028885	Soil	QHRRAPLDVFVGRAAERARVAEVVARVEAGQPWLVAIEGDPGVGKQP
Ga0311339_104347721	3300029999	Palsa	VQYRQVPLDVFVGRAAQLARVAEVISRVEAGQPWLVAIEGDPG
Ga0311357_101907303	3300030524	Palsa	VPYGQPQLDLFVGRDAEFARVAEVVTRAKAGQPWLVAIEGEPGM
Ga0318542_105195542	3300031668	Soil	VRNRQAPLDAFVGRAAELTRVAEVLARVEAGEPWLV
Ga0318572_100737601	3300031681	Soil	VQDRRTPLDVFVGRAAELARVAEVITRAEAGEPWLIAI
Ga0318572_102908492	3300031681	Soil	VPLDVFVGRTAELARVAEVVSRMEAGQPWLVAIEGDPGRG
Ga0307474_106480492	3300031718	Hardwood Forest Soil	VQDPRAPLDVFVGRAAEREQVAEVVSRVAAWQRWLVTIEGDPDRSYVFR
Ga0307474_110465661	3300031718	Hardwood Forest Soil	VQDRPKPLDPFIGRAAELARVTEVIAQVEAGQPWLVAIEGDPGVGKT
Ga0307469_110127122	3300031720	Hardwood Forest Soil	MSKVGGRVQNRQAPLDVFVGRTAELARMAEVVARVEAG
Ga0318494_103804211	3300031751	Soil	VQDRKTPLDLFVGRAAELASLAEVVTQVEAGQPWLVAIEGDPG
Ga0318554_104422082	3300031765	Soil	VPDGPVPLDVFVGRSAEIARITEVVTRVQAGEPWLVVIE
Ga0318546_101283953	3300031771	Soil	VFVGRAAELAGLADVLARVRGGQPWLVTIEGESGA
Ga0318546_102882581	3300031771	Soil	VQDRRVPLDVFVGRTAELARVAEVVSRMEAGQPWLVAIEGDPGMGK
Ga0318546_107994022	3300031771	Soil	VQDRRVPLDLFVGRQAELVQVAEVITRAEAGQPWLVAIEGDPG
Ga0318566_104249602	3300031779	Soil	VQDRQAPLDVFVGRAAELARMAEVVTRVRAGQPWLVAIE
Ga0318529_104962791	3300031792	Soil	VQDRRAPLDVFVGRAAELARVAEAVSRVEAGQPCLVAIEG
Ga0318565_102437893	3300031799	Soil	VQNWRPPLDLFVGREAELARVAEVIILVEAGQPWLVAIEGDPG
Ga0318497_103326832	3300031805	Soil	VLDRKTPLDLFVGRAAELASVAEVLTQVEAGQPWLV
Ga0318520_106569213	3300031897	Soil	VQDRRAPLDVFVGRATELAQVSEVASRVAAGQPWLVTIEGDP
Ga0310913_111249882	3300031945	Soil	VQDRQAPLDVFVGRAAELARVAEVVTRMEAGEPWLVAVEGDPGMG
Ga0306926_117873621	3300031954	Soil	VQDRQAPLDVFVGRAAELARMAEVVTRVRAGQPWLVAIEGDP
Ga0307479_121383091	3300031962	Hardwood Forest Soil	VQDRPKPLDLFIGRAAELARVAEVISRVEAGQPWLVAIEGDPGVGKT
Ga0318563_102550473	3300032009	Soil	VPDRQVPIDVFVGREPELARVAEVFARVETGQPWLVAIEGDPG
Ga0318569_100337891	3300032010	Soil	VQDRRTPLDVFVGRAAELARVAEVITRAEAGEPWLIAIEGDAGV
Ga0318549_101968881	3300032041	Soil	VQDRQAPLDVFVGRAAELARVAEVVTRMEAGEPWLVAVEGDPG
Ga0318513_104957061	3300032065	Soil	MQDRRAPLEVFVGRAAELARVAEVITRVEAGQPWL
Ga0318553_103124941	3300032068	Soil	VRDRQAPLDVFVGRAAELARVAEVIARVEAGQPWLV
Ga0306924_116651752	3300032076	Soil	VQNRQAPLDLFVGRAAEFERVAEVFARVEAGQPWL
Ga0306920_1004474252	3300032261	Soil	VQDRQAPLDVFVGRAAELARMAEVVTRVQAGQPWLVAIEGDP
Ga0306920_1018320191	3300032261	Soil	VQDRQVPLDVFVGRAAELGRVAEVLTRVEAGEPWLVA
Ga0315742_132944662	3300032756	Forest Soil	VQDRLKPLDPFVGRAAELARVAEVICRVEEGQPWLVAIEG
Ga0335085_108902562	3300032770	Soil	VGGVQDRQISLDVFVGRVAELSRVAEVVARVAAGQPWLV
Ga0335085_117573411	3300032770	Soil	VQDRRVPLEVFVGRAAELAQVAEIVARVEAGQPWLVAI
Ga0335080_118027591	3300032828	Soil	VPLDVFVGRAAELGRVAEVVARVKTGQPWLVTVEG
Ga0335080_119214161	3300032828	Soil	VPDRRVPLDVFVGRVVELEQVAEVLTRVKAGQPWLVAIEG
Ga0335075_112561312	3300032896	Soil	VPDGPVPLDVFVGRSAEIARITEVVTRVQAGEPWLLAIEGDP
Ga0335075_113368252	3300032896	Soil	VQDWPPPLEAFVGRTAELARVAEAVALVGAGQPWL
Ga0335073_1000781712	3300033134	Soil	VQDRQAPLDVFVGRAAELARVAEVVTRVQAGQPWLVAIEGDPGVGKT
Ga0335073_112117891	3300033134	Soil	VQNPRSLLDLFVGRVAELARVAEVVSLVEAGQPWLVAIEG
Ga0335077_115634992	3300033158	Soil	VQDRQPPLEVFVGRAAELALVAEVVTRAEAGQPWLVAIE

Hidden Markov Model


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