Metagenome / Metatranscriptome Family F102015

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F102015
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	55 residues
Representative Sequence	MTGNEDVRFADDDPEYATDAAAEIDVEVVAFEEEDPQNVPADMGDSGTAEPPAGGG
Number of Associated Samples	74
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	13.73 %
% of genes near scaffold ends (potentially truncated)	24.51 %
% of genes from short scaffolds (< 2000 bps)	78.43 %
Associated GOLD sequencing projects	69
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.21

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (51.961 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland (18.628 % of family members)
Environment Ontology (ENVO)	Unclassified (34.314 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (63.725 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 3.57% β-sheet: 0.00% Coil/Unstructured: 96.43%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.21
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.21
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF13466	STAS_2	5.88
PF05103	DivIVA	3.92
PF13470	PIN_3	1.96
PF00296	Bac_luciferase	1.96
PF13560	HTH_31	1.96
PF01425	Amidase	1.96
PF00479	G6PD_N	0.98
PF01527	HTH_Tnp_1	0.98
PF00211	Guanylate_cyc	0.98
PF00150	Cellulase	0.98
PF13657	Couple_hipA	0.98
PF00313	CSD	0.98
PF14530	DUF4439	0.98
PF13649	Methyltransf_25	0.98
PF05257	CHAP	0.98
PF02576	RimP_N	0.98
PF02589	LUD_dom	0.98
PF13193	AMP-binding_C	0.98
PF04185	Phosphoesterase	0.98
PF00392	GntR	0.98
PF11958	DUF3472	0.98
PF13701	DDE_Tnp_1_4	0.98
PF07992	Pyr_redox_2	0.98
PF01243	Putative_PNPOx	0.98
PF05977	MFS_3	0.98
PF13578	Methyltransf_24	0.98
PF03551	PadR	0.98
PF03795	YCII	0.98
PF01418	HTH_6	0.98
PF06441	EHN	0.98
PF00106	adh_short	0.98
PF01925	TauE	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	1.96
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	1.96
COG0364	Glucose-6-phosphate 1-dehydrogenase	Carbohydrate transport and metabolism [G]	0.98
COG0596	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold	Coenzyme transport and metabolism [H]	0.98
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	0.98
COG0779	Ribosome maturation factor RimP	Translation, ribosomal structure and biogenesis [J]	0.98
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.98
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.98
COG1737	DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains	Transcription [K]	0.98
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.98
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.98
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.98
COG2730	Aryl-phospho-beta-D-glucosidase BglC, GH1 family	Carbohydrate transport and metabolism [G]	0.98
COG2814	Predicted arabinose efflux permease AraJ, MFS family	Carbohydrate transport and metabolism [G]	0.98
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	0.98
COG3934	Endo-1,4-beta-mannosidase	Carbohydrate transport and metabolism [G]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.96 %
All Organisms	root	All Organisms	48.04 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.96 %
cellular organisms	root	All Organisms → cellular organisms	48.04 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.96 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	39.22 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	8.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.96 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	32.35 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	8.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.96 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	32.35 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	8.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.96 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	26.47 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	8.82 %
unclassified Actinobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria	0.98 %
Nitriliruptoria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.96 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	8.82 %
Actinobacteria bacterium 21-73-9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 21-73-9	0.98 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.98 %
Nitriliruptorales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales	0.98 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	0.98 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.96 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	8.82 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.98 %
unclassified Pseudonocardiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales	0.98 %
Nitriliruptoraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → Nitriliruptoraceae	0.98 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	0.98 %
Actinobacteria bacterium 21-73-9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 21-73-9	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.96 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	8.82 %
Nitriliruptor	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → Nitriliruptoraceae → Nitriliruptor	0.98 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.98 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.98 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.98 %
Actinobacteria bacterium 21-73-9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 21-73-9	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.96 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	8.82 %
Frankia tisae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Frankia tisae	0.98 %
Nitriliruptor	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → Nitriliruptoraceae → Nitriliruptor	0.98 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.98 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.98 %
Actinobacteria bacterium 21-73-9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 21-73-9	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001131\|JGI12631J13338_1011023	Not Available	1183	Open in IMG/M
3300001356\|JGI12269J14319_10005841	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	10792	Open in IMG/M
3300001593\|JGI12635J15846_10071272	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2571	Open in IMG/M
3300003505\|JGIcombinedJ51221_10031188	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1943	Open in IMG/M
3300003505\|JGIcombinedJ51221_10427998	Not Available	536	Open in IMG/M
3300004080\|Ga0062385_10437043	Not Available	792	Open in IMG/M
3300004082\|Ga0062384_100036247	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2276	Open in IMG/M
3300004091\|Ga0062387_100827733	Not Available	693	Open in IMG/M
3300004635\|Ga0062388_101033619	Not Available	801	Open in IMG/M
3300005591\|Ga0070761_10151940	Not Available	1357	Open in IMG/M
3300005602\|Ga0070762_11155124	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300005610\|Ga0070763_10139003	All Organisms → cellular organisms → Eukaryota	1260	Open in IMG/M
3300005712\|Ga0070764_10173032	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1198	Open in IMG/M
3300009624\|Ga0116105_1165563	All Organisms → cellular organisms → Eukaryota	593	Open in IMG/M
3300009700\|Ga0116217_10231819	Not Available	1203	Open in IMG/M
3300010341\|Ga0074045_10187233	Not Available	1391	Open in IMG/M
3300010343\|Ga0074044_10884044	Not Available	584	Open in IMG/M
3300010379\|Ga0136449_100077251	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	7058	Open in IMG/M
3300011120\|Ga0150983_13678618	Not Available	568	Open in IMG/M
3300014169\|Ga0181531_10191688	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1240	Open in IMG/M
3300014201\|Ga0181537_10057726	All Organisms → cellular organisms → Bacteria	2629	Open in IMG/M
3300014493\|Ga0182016_10639670	Not Available	602	Open in IMG/M
3300014501\|Ga0182024_10242329	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2425	Open in IMG/M
3300017821\|Ga0187812_1078572	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1090	Open in IMG/M
3300017823\|Ga0187818_10193301	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	888	Open in IMG/M
3300017926\|Ga0187807_1036898	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1513	Open in IMG/M
3300017943\|Ga0187819_10689080	Not Available	576	Open in IMG/M
3300017946\|Ga0187879_10026392	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3542	Open in IMG/M
3300017961\|Ga0187778_10787970	Not Available	648	Open in IMG/M
3300017970\|Ga0187783_10079786	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → Nitriliruptoraceae → Nitriliruptor	2412	Open in IMG/M
3300017970\|Ga0187783_10300720	Not Available	1171	Open in IMG/M
3300017970\|Ga0187783_10302039	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 21-73-9	1168	Open in IMG/M
3300017970\|Ga0187783_10541814	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	843	Open in IMG/M
3300017970\|Ga0187783_10603426	Not Available	794	Open in IMG/M
3300017972\|Ga0187781_10226416	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1321	Open in IMG/M
3300017972\|Ga0187781_10328148	All Organisms → cellular organisms → Eukaryota	1088	Open in IMG/M
3300017972\|Ga0187781_10578946	Not Available	808	Open in IMG/M
3300017972\|Ga0187781_10755483	Not Available	705	Open in IMG/M
3300017975\|Ga0187782_10096471	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2175	Open in IMG/M
3300017975\|Ga0187782_10344157	Not Available	1128	Open in IMG/M
3300017975\|Ga0187782_10437107	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	997	Open in IMG/M
3300017975\|Ga0187782_10660269	Not Available	805	Open in IMG/M
3300018034\|Ga0187863_10863362	All Organisms → cellular organisms → Eukaryota	514	Open in IMG/M
3300018046\|Ga0187851_10654982	Not Available	593	Open in IMG/M
3300018062\|Ga0187784_11145384	Not Available	617	Open in IMG/M
3300018085\|Ga0187772_10377393	All Organisms → cellular organisms → Eukaryota	984	Open in IMG/M
3300018085\|Ga0187772_10578658	Not Available	797	Open in IMG/M
3300018085\|Ga0187772_10909097	Not Available	640	Open in IMG/M
3300018085\|Ga0187772_10965195	Not Available	621	Open in IMG/M
3300019260\|Ga0181506_1421794	Not Available	525	Open in IMG/M
3300021402\|Ga0210385_10083961	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2192	Open in IMG/M
3300021474\|Ga0210390_10732053	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	823	Open in IMG/M
3300021477\|Ga0210398_10946867	Not Available	689	Open in IMG/M
3300024123\|Ga0228600_1003936	Not Available	1079	Open in IMG/M
3300024220\|Ga0224568_1035548	Not Available	535	Open in IMG/M
3300027080\|Ga0208237_1061959	Not Available	552	Open in IMG/M
3300027609\|Ga0209221_1130095	Not Available	635	Open in IMG/M
3300027648\|Ga0209420_1013677	All Organisms → cellular organisms → Bacteria	2779	Open in IMG/M
3300027767\|Ga0209655_10175118	Not Available	708	Open in IMG/M
3300027768\|Ga0209772_10022939	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1782	Open in IMG/M
3300027768\|Ga0209772_10196840	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300027783\|Ga0209448_10144734	Not Available	794	Open in IMG/M
3300027812\|Ga0209656_10020009	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4101	Open in IMG/M
3300027853\|Ga0209274_10034348	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2363	Open in IMG/M
3300027853\|Ga0209274_10104443	Not Available	1400	Open in IMG/M
3300027884\|Ga0209275_10285342	All Organisms → cellular organisms → Eukaryota	913	Open in IMG/M
3300027884\|Ga0209275_10902779	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300027895\|Ga0209624_10267776	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1137	Open in IMG/M
3300027895\|Ga0209624_10648363	Not Available	699	Open in IMG/M
3300027905\|Ga0209415_10024058	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	9192	Open in IMG/M
3300027905\|Ga0209415_10748473	Not Available	690	Open in IMG/M
3300030007\|Ga0311338_10441445	All Organisms → cellular organisms → Bacteria	1383	Open in IMG/M
3300030007\|Ga0311338_10770500	Not Available	963	Open in IMG/M
3300030013\|Ga0302178_10310572	All Organisms → cellular organisms → Eukaryota	723	Open in IMG/M
3300030056\|Ga0302181_10055813	Not Available	2060	Open in IMG/M
3300030520\|Ga0311372_11134910	All Organisms → cellular organisms → Eukaryota	1011	Open in IMG/M
3300030631\|Ga0210279_10448391	Not Available	526	Open in IMG/M
3300030738\|Ga0265462_12352063	Not Available	528	Open in IMG/M
3300030741\|Ga0265459_10222156	Not Available	1282	Open in IMG/M
3300030743\|Ga0265461_12250419	Not Available	633	Open in IMG/M
3300030760\|Ga0265762_1187957	Not Available	512	Open in IMG/M
3300031028\|Ga0302180_10544000	Not Available	564	Open in IMG/M
3300031234\|Ga0302325_10845093	Not Available	1282	Open in IMG/M
3300031236\|Ga0302324_101335064	Not Available	944	Open in IMG/M
3300031236\|Ga0302324_102567891	Not Available	620	Open in IMG/M
3300031708\|Ga0310686_109172443	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300031708\|Ga0310686_109827316	Not Available	1129	Open in IMG/M
3300031708\|Ga0310686_115699840	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	27070	Open in IMG/M
3300031708\|Ga0310686_118284375	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3658	Open in IMG/M
3300032515\|Ga0348332_13353364	Not Available	669	Open in IMG/M
3300032756\|Ga0315742_12419941	Not Available	597	Open in IMG/M
3300032770\|Ga0335085_10067641	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4741	Open in IMG/M
3300032895\|Ga0335074_10066477	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4890	Open in IMG/M
3300032895\|Ga0335074_10107782	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3648	Open in IMG/M
3300032895\|Ga0335074_10122709	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Frankia tisae	3360	Open in IMG/M
3300032895\|Ga0335074_10619871	Not Available	1072	Open in IMG/M
3300032896\|Ga0335075_11044291	Not Available	727	Open in IMG/M
3300033818\|Ga0334804_022238	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2170	Open in IMG/M
3300034124\|Ga0370483_0076010	All Organisms → cellular organisms → Eukaryota	1086	Open in IMG/M
3300034124\|Ga0370483_0174564	Not Available	727	Open in IMG/M
3300034163\|Ga0370515_0265786	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	727	Open in IMG/M
3300034199\|Ga0370514_086782	Not Available	796	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.02%
Host-Associated	Host-Associated	0.98%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	79.41%
Aquatic	Environmental → Aquatic	19.61%
Plants	Host-Associated → Plants	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	67.65%
Freshwater	Environmental → Aquatic → Freshwater	19.61%
Peat	Environmental → Terrestrial → Peat	9.80%
Plant Litter	Environmental → Terrestrial → Plant Litter	1.96%
Roots	Host-Associated → Plants → Roots	0.98%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Terrestrial → Soil → Wetlands	32.35%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	19.61%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	17.65%
Loam	Environmental → Terrestrial → Soil → Loam	17.65%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	9.80%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	1.96%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	30.39%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	17.65%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	14.71%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	9.80%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	9.80%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	7.84%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.92%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.96%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	1.96%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	18.63%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	9.80%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	8.82%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	8.82%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	7.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.86%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	5.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.90%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.90%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	3.92%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.92%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	3.92%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.96%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.96%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.98%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.98%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.98%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.98%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.98%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.98%
Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Roots	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001131	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1	Environmental	Open in IMG/M
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300009624	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014493	Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017821	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018046	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300019260	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300024123	Spruce roots microbial communities from Bohemian Forest, Czech Republic - CRU5	Host-Associated	Open in IMG/M
3300024220	Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLU5	Environmental	Open in IMG/M
3300027080	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF009 (SPAdes)	Environmental	Open in IMG/M
3300027609	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027648	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027768	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030013	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_3	Environmental	Open in IMG/M
3300030056	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_3	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030631	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO141-VCO086SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030738	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VDE Co-assembly	Environmental	Open in IMG/M
3300030741	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ANR Co-assembly	Environmental	Open in IMG/M
3300030743	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VCO Co-assembly	Environmental	Open in IMG/M
3300030760	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031028	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032756	Forest Soil Metatranscriptomics Site 2 Humus Litter Mineral Combined Assembly	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300033818	Peat soil microbial communities from Stordalen Mire, Sweden - 713 S-3-M	Environmental	Open in IMG/M
3300034124	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14	Environmental	Open in IMG/M
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental	Open in IMG/M
3300034199	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_01D_14	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12631J13338_10110233	3300001131	Forest Soil	MTGNEDLRFADDDPEYATDAAAEIDVEAAALEEADPQSVPPDIGDSGTAEPPGGKG*
JGI12269J14319_1000584112	3300001356	Peatlands Soil	MTGNQDVRFADDDPEYATDAAAEIDVEVVAFEEEDPRNVPADRGDSGTAEPPAGGG*
JGI12635J15846_100712723	3300001593	Forest Soil	MTGNEDVRFADDDPEYATDAAAEIDVEVVAFEEEDPQNVPADMGDSGTAEPPAGGG*
JGIcombinedJ51221_100311882	3300003505	Forest Soil	MTGNEDVRFADEDPEYATDAAAEIDAEQAGFDVTDPQDVPADLGDSGTAAPPAGEG*
JGIcombinedJ51221_104279981	3300003505	Forest Soil	MTASEDVRYADDDPEYATDAAAEIDVEGAGLVAEDPQNVPADLGDSRTAEPPTGTAAAGEA*
Ga0062385_104370431	3300004080	Bog Forest Soil	MTGNQDVGFADDDPEYATDAAAEIDVEVVAFEEEDPQNIPADRGDSGTAEPPAGGG*
Ga0062384_1000362472	3300004082	Bog Forest Soil	MTGNEDVRFADEDREYATDAAAEVDAEQAGFDVTDPADVPADLGDSRTADPPAGAS*
Ga0062387_1008277332	3300004091	Bog Forest Soil	MTGNQDVGFADDDPEYATDAAAEIDVEVVAFEEEDPQNVPADRGDSGTAEPPAGGG*
Ga0062388_1010336191	3300004635	Bog Forest Soil	DNVRDIFADDDPEYATDAAAGIDREEVEFELDDPKTMPKDQGDSGSADRPGGDD*
Ga0070761_101519402	3300005591	Soil	MTGNEDAGFADDDPEYATDAAAEIDVEAAAFEAEDPRNVPADRGDSGTAEPPAGGG*
Ga0070762_111551242	3300005602	Soil	MSGDEAAGFVDDDPEYATDAAAEIDVEAAGFEVADPRDVPADVGDSGTAEPPAGDG*
Ga0070763_101390032	3300005610	Soil	MSGDKAAGFVDDDPEYATDAAAEIDVEAAGFEVADPRDVPADVGDSGTAEPPAGDG*
Ga0070764_101730323	3300005712	Soil	GPRFADDDPEYATDAAAEIDAEVTALVAENPQNVPADLGDSGTAEPPAGGG*
Ga0116105_11655632	3300009624	Peatland	MTGNEDVGFADDDPEYATDAAAEIDVEVVAFEEEDPQNVPADMGDSGTAEPPAGDS*
Ga0116217_102318194	3300009700	Peatlands Soil	MTGNQDVRFADDDPEYATDAAAEIDVEVVASGEEDPQNVPADRGDSGSAEPAAGCG*
Ga0074045_101872333	3300010341	Bog Forest Soil	MTGNEDVRFADDDPEYATDAAAGIDVEVVASGEEDPQDVPADMGDPGSAEPPAGDG*
Ga0074044_108840442	3300010343	Bog Forest Soil	MTGNEDAGFADDDPEYATDAAAEIDVEVAAFGEEDPQNVPADRGDSGTAEPPSGGG*
Ga0136449_1000772513	3300010379	Peatlands Soil	MTGNEDVRFADDDPEYATDAAAGIDVEVVAFGEEDPQNVPADMGDAGTAEPPAGDG*
Ga0150983_136786182	3300011120	Forest Soil	EDVRFADEDPEYATDAAAEIDAEQAGFDVTDPQDVPADLGDSGTAAPPAGEG*
Ga0181531_101916882	3300014169	Bog	MTGNEDVRFADDDPEYATDAAAEIDVEVVAFEEEDPHNVPADMGDSGTAEPPAGGG*
Ga0181537_100577264	3300014201	Bog	MTGNEGARFADADPEYATDAAAEIDVEVVEFVAEDPQNVPADTGDSGTAEPPAGGG*
Ga0182016_106396702	3300014493	Bog	MAGNADSKFADDDPEYATDAAAEIDVEVIGFEPDDPKNVPKDQGDSGNAVRPEGDD*
Ga0182024_102423292	3300014501	Permafrost	MTGNEDLRFADDDPEYATDAAAEIDVEAAALEAADPQSVPLDIGDSGTAEPPGGKG*
Ga0187812_10785723	3300017821	Freshwater Sediment	MTGNEDVRFADDDPEYATDAAAEIDVAVVAFEEEDPQNVPADMGDSGTAEPPAGDG
Ga0187818_101933013	3300017823	Freshwater Sediment	YVRFMTGNEDVRFADDDPEYATDAAAEIDVEVVAFEEEDPQNVPADMGDSGTAEPPAGDG
Ga0187807_10368983	3300017926	Freshwater Sediment	MTGNEDVRFADDDPEYATDAAAEIDVEVVAFEEEDPQNVPADMGDAGTAEPPAGDG
Ga0187819_106890801	3300017943	Freshwater Sediment	MTGNEDVRFADDDPEYATDAAAEIDVEVVAFEEEDPQNVPADMGDSGTAEPPAGGADAVRVRAVA
Ga0187879_100263922	3300017946	Peatland	MTGNEDVGFADDDPEYATDAAAEIDVEVVAFEEEDPQNVPADMGDSGTAEPPAGDS
Ga0187778_107879701	3300017961	Tropical Peatland	SEDVRFADDDPEYATDAAAEIDVEAPAFEEEAPQNVPADMGDSGTAEPPAGDG
Ga0187783_100797864	3300017970	Tropical Peatland	MTGDKDVRFADDDPEYASDAAAEIDVEAPGFAEEDPQNVPTDIGDSGTAEPPAGDG
Ga0187783_103007204	3300017970	Tropical Peatland	MTGDEDVRFADDDPEYATDAAAEIDLEAAEFAEEDPQNVPADRGDSGTAEPPAGDG
Ga0187783_103020392	3300017970	Tropical Peatland	MIGNEEVRFADDDPEYATDAAAEIDAEVIGVEEDDPQTVPADRGDSGTAEPPAGDG
Ga0187783_105418142	3300017970	Tropical Peatland	MTANEDVRFADDEPEYATDAAAEIDVEVVVFEAEDPQNVPADVGDSGTAEPAEGGG
Ga0187783_106034262	3300017970	Tropical Peatland	MIGNEEVRFADDDPEYATDAAAEIDAEVIALEEDDPQTVPADRGDSGTAEPPAGGG
Ga0187781_102264163	3300017972	Tropical Peatland	VTGSEDVRFADDDPEYATDAAAEIDVEAPAFEEEDPQNVPADMGDSGTAEPPAGGG
Ga0187781_103281482	3300017972	Tropical Peatland	MTGSEDARFADQDPEYATDAAAEIDAEAAGFEAEDPQNVPADVGDAGTAEPPAGEA
Ga0187781_105789462	3300017972	Tropical Peatland	MTGNEDVRFADDDPEYATDAAAEIDVEVTGSGTEDPQNVPADVGDSGSADPPAGGG
Ga0187781_107554832	3300017972	Tropical Peatland	MTGNEGDRFADDDPEYATDAAAEIDVEVVEFAAADPASVPADLGDAGPAGLPAGQRC
Ga0187782_100964713	3300017975	Tropical Peatland	MTGSEEVRFADDDPEYATDAASEIDVEAAAFEEDDPQDVPADRGDSGTAEPAAGGS
Ga0187782_103441571	3300017975	Tropical Peatland	MTGDKDVRFADDDPEYASDAAAEMDVEAPGFAEEDPQNVPTDMGDSGTAERPAGDG
Ga0187782_104371072	3300017975	Tropical Peatland	MAGSEDARFADQDPEYATDAAAEIDAEAAGFEAEDPQNVPADVGDAGTAEPPAGEA
Ga0187782_106602692	3300017975	Tropical Peatland	MIGNEEVRFADDDPEYATDAAAEIDAEVIALQEDDPQTVPTDRGDSGTAEPPAGDG
Ga0187863_108633622	3300018034	Peatland	DPEYATDAAAEIDVEVVAFEEEDPQNVPADMGDSGTAEPPAGDS
Ga0187851_106549821	3300018046	Peatland	VSYGRAMAGNADSKFADDDPEYATDAAAEIDVEVIGFEPDDPKNVPKDQGDSGNAVRPEGDD
Ga0187784_111453841	3300018062	Tropical Peatland	MTGDKDVRFADDDPEYASDAAAEIDVEAPGFAEEDPQNVPTDMGDSGTAEPAAGDG
Ga0187772_103773931	3300018085	Tropical Peatland	DARFADQDPEYATDAAAEIDAEAAGFEAEDPQNVPADVGDAGTAEPPAGEA
Ga0187772_105786582	3300018085	Tropical Peatland	MTGSQDARFADQDPEYATDAAAEIDAEAAGFEAEDPQNVPADVGD
Ga0187772_109090972	3300018085	Tropical Peatland	MTGNEDVRFADDDPEYATDAAAEIDVEVAAFEEDDPQNVPADIGDSGTAEPAAGDG
Ga0187772_109651952	3300018085	Tropical Peatland	MTGSEDARFADQDPEYATDAAAEIDAEAAGFEAEDPQNVPADVGD
Ga0181506_14217942	3300019260	Peatland	MTGNEGARFADADPEYATDAAAEIDVEVVAFEEEDPRNVPADMGDSGTAEPP
Ga0210385_100839613	3300021402	Soil	MSASEDVRYADDDPEYATDAAAEIDVEGAGLVAEDPQNVPADLGDSRTAEPPTGTAAAGE
Ga0210390_107320532	3300021474	Soil	MAENTRDHYADDDPEYATDAAAEIDCEEVEFETDDPKAIPKDQGDSGSADVPGGDS
Ga0210398_109468671	3300021477	Soil	MSASEDVRYADDDPEYATDAAAEIDVEGAGLVAEDPQNVPADLGDSRTAEPPTGTA
Ga0228600_10039362	3300024123	Roots	MTGNEDLRFADDDPEYATDAAAEIDVEAAALEEADPQSVPPDIGDSGTAEPPGGKG
Ga0224568_10355481	3300024220	Plant Litter	MTGNEDLRFADDDPEYATDAAAEIDVEAAALEEADPQSVPPDIGDSG
Ga0208237_10619592	3300027080	Forest Soil	MTGNEDVRFADEDPEYATDAAAEIDAEQAGFDVTDPQDVPADLGDSGTAAPPAGEG
Ga0209221_11300952	3300027609	Forest Soil	MTGNEDVRFADDDPEYATDAAAEIDVEVVAFEEEDPQNVPADMGDSGTAEPPAGGG
Ga0209420_10136774	3300027648	Forest Soil	MSGDKAAGFVDDDPEYATDAAAEIDVEAAGFEVADPRDVPADVGDSGTAEPPAGEG
Ga0209655_101751182	3300027767	Bog Forest Soil	MTGNQDVGFADDDPEYATDAAAEIDVEVVAFEEEDPQNVPADMGDSGTAEPPAGGG
Ga0209772_100229391	3300027768	Bog Forest Soil	MTGNQDVGFADDDPEYATDAAAEIDVEVVAFEEEDPQNIPADRGDSGTAEPPAGGG
Ga0209772_101968402	3300027768	Bog Forest Soil	MTGNEDVRFADEDREYATDAAAEVDAEQAGFDVTDPADVPADLGDSRTADPPAGAS
Ga0209448_101447341	3300027783	Bog Forest Soil	MTGNQDVGFADDDPEYATDAAAQIDVEVVAFEEEDPQNVPADRGDSGTAEPPAGGG
Ga0209656_100200093	3300027812	Bog Forest Soil	MTGNEDVRFADDDPEYATDAAAGIDVEVVASGEEDPQDVPADMGDPGSAEPPAGDG
Ga0209274_100343484	3300027853	Soil	MTGNEDVRFADDDPEYATDAAAEIDVEVVASEEEDPQNIPADMGDSGTAEPPAGGS
Ga0209274_101044432	3300027853	Soil	MTGNEDAGFADDDPEYATDAAAEIDVEAAAFEAEDPRNVPADRGDSGTAEPPAGGG
Ga0209275_102853423	3300027884	Soil	AAGFVDDDPEYATDAAAEIDVEAAGFEVADPRDVPADVGDSGTAEPPAGDG
Ga0209275_109027792	3300027884	Soil	MSGDEAAGFVDDDPEYATDAAAEIDVEAAGFEVADPRDVPADVGDSGTAEPPAGDG
Ga0209624_102677763	3300027895	Forest Soil	MTGNSTTGNKGPRFADDDPEYATDAAAEIDVEVTGLVAENPQNVPADLGDSGTAEPPAGA
Ga0209624_106483632	3300027895	Forest Soil	MTGNGDVRFADDDPEYATDAAAEIDLEMVAVEGEDPQNVPADMGDSGTAEPPAGSG
Ga0209415_100240587	3300027905	Peatlands Soil	MTGNQDVRFADDDPEYATDAAAEIDVEVVAFEEEDPRNVPADRGDSGTAEPPAGGG
Ga0209415_107484732	3300027905	Peatlands Soil	MTGNEDVRFADDDPEYATDAAAEIDVEVAAFGEEDPQNVPADRGDSGTAEPPAGGADAVRVRAVA
Ga0311338_104414454	3300030007	Palsa	VRHMTGNEDVGFADDDPEYATDAAAEIDVEVVAFEEEDPQNVPADMGDSGTAEPPAGDS
Ga0311338_107705002	3300030007	Palsa	MTGNEDVGFADDDPEYATDAAAEIDVEVVAFEEEDPRNVPADMGDSGTAEPPAGGG
Ga0302178_103105722	3300030013	Palsa	MTGNEHLRFADDDPEYATDAAAEIDVEVVAFEEEDPRNVPADMGDSGTAEPPAGDS
Ga0302181_100558132	3300030056	Palsa	MTGNEDVGFAHDDPEYATDAAAEIDVEVVAFEEEDPQNVPADMGDSGTAEPPAGDS
Ga0311372_111349103	3300030520	Palsa	FADDDPEYATDAAAEIDVEVVAFEEEDPQNVPADMGDSGTAEPPAGDS
Ga0210279_104483912	3300030631	Soil	GNEDVRFADEDREYATDAAAEIDAEEAGFDEADPKDVPADLGDSGTADPPAGAS
Ga0265462_123520631	3300030738	Soil	RFADEDLEYATDAAAEVDAEQAGFDITPPADVPADLGDSGTADPPAGAS
Ga0265459_102221561	3300030741	Soil	GNEKVRFADEDLEYATDAAAEVDAEQAGFDITPPADVPADLGDSGTADPPAGAS
Ga0265461_122504191	3300030743	Soil	REQVMTGNKEVRFADEDLEYATDAAAEVDAEQAGFDITPPADVPADLGDSGTADPPAGAS
Ga0265762_11879572	3300030760	Soil	MTGNEDPRFADDDPEYATDAAAEIDVEAAGFEVADPRDVPADVGDSGTAEPPAGEG
Ga0302180_105440001	3300031028	Palsa	MTGNEDVGFADDDPEYATDAAAEIDVEVVAFEEEDPQNVPADMGDSGTAEPPAGD
Ga0302325_108450931	3300031234	Palsa	MTGNEDVGFAHDDPEYATDAAAEIDVEVIAFEEEDPQNVPADMGDS
Ga0302324_1013350642	3300031236	Palsa	MTGNEHLRFADDDPEYATDAAAEIDVEVVAFEEEDPRNVPADMGDSGTAEPPAGGG
Ga0302324_1025678912	3300031236	Palsa	MTETAGIIRYADDDPEYATDAAAGIDIEAVGLEPDDPAIVPKDQGDSGSAAVPDGGA
Ga0310686_1091724432	3300031708	Soil	MTGNEDVRFADEDREYTTDAAAEVDAEQAGFDVTDPQDVPADLGDSRTADPPSGAS
Ga0310686_1098273161	3300031708	Soil	MAENTRDHYADDDPEYATDAAAGIDCEQVEFETDDPKVIPKDLGDSGSADVPGGDG
Ga0310686_11569984014	3300031708	Soil	MTGNEDVRFADEDREYVTDAAAEVDAEQAGFDVTDPADVPADLGDSGTADPPAGAS
Ga0310686_1182843752	3300031708	Soil	MTGNQDVRFADDDPEYATDAAAEIDVEVVAFEEEDPQNVPADRGDSGTAEPPAGGG
Ga0348332_133533642	3300032515	Plant Litter	GIIRYADDDPEYATDAAAGIDIEAVGLEPDDPAIVPKDQGDSGSAAVPDGGA
Ga0315742_124199412	3300032756	Forest Soil	MTGNEDLRFADDDPEYATDAAAEIDVEAAALEAADPQSVPLDIGDSGTAEPPGGKG
Ga0335085_100676413	3300032770	Soil	MTGDEGARFADDDPEYATDAAAEIDVEVTGFEAEDPQNVPADMGDPGTAEPAAGDG
Ga0335074_100664775	3300032895	Soil	MTASEEVRYADDDPEYATDAAAEIDVEGAGLEAEDPQNVPADLGDSGTAQPPTGEPPAGA
Ga0335074_101077825	3300032895	Soil	MTGTEGARFADADPEYATDAAAEIDVEVVEFEADDPANVPADLGDSGTADPPAAGGS
Ga0335074_101227094	3300032895	Soil	MTGNEGVRFADSDPEYATDAAAEIDVEVVEFVAADPQDVPADTGDSGTAAPPAGGG
Ga0335074_106198713	3300032895	Soil	MTGNEGARFADADPEYATDAAAEIDVEVVEFVAADPQAVPADVGDSGTAEPPAGGG
Ga0335075_110442912	3300032896	Soil	ARFADADPEYATDAAAEIDVEVVEFEADDPANVPADLGDSGTADPPAAGGS
Ga0334804_022238_825_995	3300033818	Soil	MAGNADSKFADDDPEYATDAAAEIDVEVIGFEPDDPKNVPKDQGDSGNAVRPEGDD
Ga0370483_0076010_792_962	3300034124	Untreated Peat Soil	MTGNQDVGFADDDPEYATDAAAEIDVEVVAFEEEDPQNVPADMGDSGTAEPPAGDS
Ga0370483_0174564_589_726	3300034124	Untreated Peat Soil	MTGNEDVGFADDDPEYATDAAAEIDVEVVAFEEEDPQNVPADMGDS
Ga0370515_0265786_79_249	3300034163	Untreated Peat Soil	MTGNEDVRFADDDPEYATDAAAGIDVEVVALEEEDPQNVPADMGDSGTAEPPAGDS
Ga0370514_086782_596_766	3300034199	Untreated Peat Soil	MTGNEDVGFADDDPEYATDAAAEIDVEVVAFEEEDPQNVPADMGDSGTAEPPTGDS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F102015

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences