NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F101972

Metagenome / Metatranscriptome Family F101972

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F101972
Family Type Metagenome / Metatranscriptome
Number of Sequences 102
Average Sequence Length 45 residues
Representative Sequence VGAGGPIVFNQWHNSTGAFEAAKYVNGNLVLVGSVSAAQIAALSR
Number of Associated Samples 97
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.98 %
% of genes near scaffold ends (potentially truncated) 99.02 %
% of genes from short scaffolds (< 2000 bps) 90.20 %
Associated GOLD sequencing projects 90
AlphaFold2 3D model prediction Yes
3D model pTM-score0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (100.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(31.372 % of family members)
Environment Ontology (ENVO) Unclassified
(26.471 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(46.078 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.
1JGI20242J16303_1070732
2JGI24738J21930_101186392
3Ga0066675_106631191
4Ga0066388_1032660201
5Ga0066388_1036713761
6Ga0066388_1077287591
7Ga0068869_1000202746
8Ga0070688_1000840331
9Ga0070706_1007953392
10Ga0070735_108488771
11Ga0066661_105501861
12Ga0066670_102080321
13Ga0070763_107750282
14Ga0066903_1021747161
15Ga0070766_112295931
16Ga0075023_1000295941
17Ga0070715_102312822
18Ga0075014_1000411713
19Ga0070712_1006232871
20Ga0070765_1004458171
21Ga0070765_1014191061
22Ga0075021_101794721
23Ga0075433_101501803
24Ga0126373_125142161
25Ga0134067_102571971
26Ga0126370_106828011
27Ga0126379_117194121
28Ga0126381_1036075971
29Ga0126383_124447591
30Ga0126344_10012561
31Ga0137391_100847664
32Ga0137393_103725901
33Ga0137389_115113961
34Ga0137363_101851751
35Ga0137390_113256371
36Ga0134029_10555652
37Ga0134030_12695162
38Ga0134053_11418971
39Ga0137397_102515543
40Ga0164303_103798871
41Ga0164306_102978983
42Ga0137418_104416711
43Ga0182036_103638062
44Ga0182034_105703342
45Ga0182037_114983082
46Ga0187812_11657392
47Ga0187821_104229451
48Ga0187808_106105042
49Ga0193728_13612462
50Ga0210395_111190531
51Ga0210396_100989144
52Ga0210393_109156232
53Ga0210385_102850743
54Ga0213878_100469861
55Ga0210392_102359773
56Ga0210402_106342012
57Ga0126371_123687951
58Ga0213853_100991211
59Ga0242677_10533712
60Ga0242665_101590942
61Ga0247677_10473401
62Ga0247692_10216141
63Ga0247668_10039721
64Ga0207685_101805042
65Ga0207684_117426141
66Ga0207659_100600814
67Ga0209055_12348691
68Ga0207862_10322652
69Ga0209166_101468011
70Ga0209590_100123181
71Ga0209068_106460301
72Ga0222748_10318751
73Ga0265462_111123482
74Ga0265773_10457052
75Ga0170824_1042892541
76Ga0170820_123416072
77Ga0318571_100013911
78Ga0318571_102900571
79Ga0307373_101446823
80Ga0318560_103556081
81Ga0318501_104095142
82Ga0307477_108982441
83Ga0318535_100746313
84Ga0318535_104261982
85Ga0318546_104152822
86Ga0318547_105372771
87Ga0318550_101989541
88Ga0307478_108223942
89Ga0318544_100914681
90Ga0306921_100217671
91Ga0310913_105024711
92Ga0310909_102734061
93Ga0306926_127293181
94Ga0308176_121228072
95Ga0306922_118626901
96Ga0318506_104391092
97Ga0318505_102061231
98Ga0318510_104445292
99Ga0318553_101378351
100Ga0318577_101535221
101Ga0318540_104535272
102Ga0310914_105262832
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 9.59%    β-sheet: 20.55%    Coil/Unstructured: 69.86%
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Variant

51015202530354045VGAGGPIVFNQWHNSTGAFEAAKYVNGNLVLVGSVSAAQIAALSRSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
100.0%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Watersheds
Freshwater Sediment
Watersheds
Soil
Vadose Zone Soil
Tropical Forest Soil
Bulk Soil
Grasslands Soil
Surface Soil
Soil
Soil
Forest Soil
Soil
Hardwood Forest Soil
Soil
Tropical Forest Soil
Forest Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Switchgrass Rhizosphere
Soil
Corn Rhizosphere
Miscanthus Rhizosphere
Populus Rhizosphere
Miscanthus Rhizosphere
Boreal Forest Soil
2.9%3.9%3.9%7.8%5.9%3.9%3.9%31.4%5.9%4.9%3.9%4.9%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI20242J16303_10707323300001648Forest SoilVFTQSHNSTGAFEAAKYVSGNLVLVGAVSAAQIAAISK*
JGI24738J21930_1011863923300002075Corn RhizosphereWHNSTGAFEAVKDVNGNPVLVGSVSAAQIAAISR*
Ga0066675_1066311913300005187SoilGGPIVFNQSHNSTGAFEAAKYVNGNLVLVGAVSAAQIAALSR*
Ga0066388_10326602013300005332Tropical Forest SoilIVFNHWHNSTGAFEAARYVNGNLVLVGSVSAAQIAAISR*
Ga0066388_10367137613300005332Tropical Forest SoilQIQYVGAGGPIVFNQWHNSTGAFEAAKYLKGNPVIVGSVSAAQIASLSR*
Ga0066388_10772875913300005332Tropical Forest SoilKQIQYVGAGGPIAFNQWHNSTGAFEAAKYVKGGPVLVGSVSAAQIATLSR*
Ga0068869_10002027463300005334Miscanthus RhizospherePIVFDQWHNSTGAFEAVKDVNGNPVLVGSVSAAQIAAISR*
Ga0070688_10008403313300005365Switchgrass RhizosphereALAAGKQIQYVGAGGPIVFNQSHNSTGAFEAAKYVNGNLVLVGSVSAAQIAAISR*
Ga0070706_10079533923300005467Corn, Switchgrass And Miscanthus RhizosphereGKQIQYVGAGGPIVFDHWHSSTGAFEAAKYVNGNPVLVGSVSAAQIAAISR*
Ga0070735_1084887713300005534Surface SoilQAGKQIQYLGAGGPIVFNHWHNSTGAFEAAKYVKGNPVLVGSVTAAQIAALSR*
Ga0066661_1055018613300005554SoilHWHNSTGAFEAAKYAKGNPVLVGSVSAAQIAALSR*
Ga0066670_1020803213300005560SoilQYVGAGGPIVFDQWHNSTGAFEAAKYVNGNLVLVGSVSAAQIAAISR*
Ga0070763_1077502823300005610SoilSHNSTGAFEAAKYVSGNVDLVGSVTAAQIAAISK*
Ga0066903_10217471613300005764Tropical Forest SoilGGSIVFNRWHNSTGAFEAARYLNGNPSLVGSVSAAQIAAISR*
Ga0070766_1122959313300005921SoilAGKQIQYVGAGGPIVFTKSHNSTGAFEAAKYVSGNLVLVGAVSAAQIAAISK*
Ga0075023_10002959413300006041WatershedsQIQYVGAGGPIVFNQWHNSTGAFEAAKDVNGNPVLVGSVSAAQIAAISK*
Ga0070715_1023128223300006163Corn, Switchgrass And Miscanthus RhizosphereQIQYIGAGGPIAFNQWHNSTGAFEAAKYVKGSPVLVGSVSAAQIASLSR*
Ga0075014_10004117133300006174WatershedsQYVGAGGPIVFNQWHNSTGAFEAAKYVNGNLVVVGSVTAAQIAAISK*
Ga0070712_10062328713300006175Corn, Switchgrass And Miscanthus RhizosphereGKQIQYVGAGGPIVFNHWHNSTGAFEAAKYVKGNPVLVGSVSAAQIATLSR*
Ga0070765_10044581713300006176SoilGAGGPIVFNHWHNSTGAFEAARYVKGNPVLVGSVSAAQIAALSR*
Ga0070765_10141910613300006176SoilQQIQYVGAGGPIVFNRWHNSTGAFEAARYMQGNIVLVGSVSAAQIAALSR*
Ga0075021_1017947213300006354WatershedsQYVGAGGPIVFNQSHNSTGAFEAAKYVNGNLVLVGSVSAAQIAAISR*
Ga0075433_1015018033300006852Populus RhizosphereQWHNSTGAFEAVKDVNGNPVLVGSVSAAQIAAISR*
Ga0126373_1251421613300010048Tropical Forest SoilGPIVFDQWHNSTGAFEAAKYVSGNQVLVGSVSAAQIAALSG*
Ga0134067_1025719713300010321Grasslands SoilLAAGKQIQYVGAGGPIVFDQWHNSTGAFEAAKDVNGNPVLVGSVSAAQIAAISR*
Ga0126370_1068280113300010358Tropical Forest SoilGAGGPIVFNQWHNSTGAFEAAKFLKGNISLVGSVSAAQIAAISK*
Ga0126379_1171941213300010366Tropical Forest SoilGGPIVFNQWHNSTGAFEAAKYLKGNPVIVGSVSAAQIASLSR*
Ga0126381_10360759713300010376Tropical Forest SoilALKAGKQIQYVGAGGPIVFNRWRNSTGAFEAAKYLKGNPVIVGSVSAAQISSLSR*
Ga0126383_1244475913300010398Tropical Forest SoilQWHNSTGAFEAARYVNGNLALVGSVSAAQIAALSR*
Ga0126344_100125613300010866Boreal Forest SoilNHWHNSTGAFEAAKYTKGNLTLVGSVSAAQIATISR*
Ga0137391_1008476643300011270Vadose Zone SoilWHNSTGAFEAARYVNGNLALVGSVSAAQIAAISR*
Ga0137393_1037259013300011271Vadose Zone SoilIQYVGAGGPIVFNRGHNSTGAFEAARYVNGKLVLVGSVSAAQIAAISR*
Ga0137389_1151139613300012096Vadose Zone SoilIQYVGAGGPIVFNRWDNSTGPFQGGRYANGKLALVGSVSAAQIAAISR*
Ga0137363_1018517513300012202Vadose Zone SoilAGKHIQYVGAGGPIVFNQSHNSTGAFEAAKYVNGNLVLVGSVSAAQIAAISR*
Ga0137390_1132563713300012363Vadose Zone SoilAAGKAALQAGKQIQYVGAGGPIVFDHWHNSTGAFEAAKYVKGNPVLVGSVSAAQIATLSR
Ga0134029_105556523300012377Grasslands SoilWHNSTGAFEAAKYVNGNPVLVGSVSAAQIAAISR*
Ga0134030_126951623300012387Grasslands SoilGGPIVFNQSHNSTGAFEAAKYVNGNLVLVGSVSAAQIAALSR*
Ga0134053_114189713300012406Grasslands SoilAAGKQIQYVGAGGPIVFDQWHNSTGAFEAAKQVDGNPVLVGSVSAAQIAAISR*
Ga0137397_1025155433300012685Vadose Zone SoilAALGAGKPIQYVGAGGPIVFNQSHNSTGSFAAAKYVNGKLVLVGSVSAAQIAAISR*
Ga0164303_1037988713300012957SoilGGAGGPIVFVQWHNSTGACEAVKDVNGNDVLVGSVSAAQIAAISR*
Ga0164306_1029789833300012988SoilPIVFNQSHNSTGAFEAAKYVNGNLVLVGAVSAAQIAAISR*
Ga0137418_1044167113300015241Vadose Zone SoilPIVFNRWHNSTGAFEAARYVNGKLVLVGSVSAAQIAAMSR*
Ga0182036_1036380623300016270SoilAGGPIVFNQWHNSTGAFEAAKDVNGNPVLVGSVSAAQIAALSG
Ga0182034_1057033423300016371SoilPIVFNQWHNSTGAFEAAKYLKGNPVIVGSVSAAQIASLSR
Ga0182037_1149830823300016404SoilFNKWHNSTGAFEVAGYLAPGKIRLAGTVSAAAIAALSGR
Ga0187812_116573923300017821Freshwater SedimentVFNQWHNSTGAFEAAKYVSGNVDLVGSVTAAQIAAISK
Ga0187821_1042294513300017936Freshwater SedimentIVFSQWHNSTGAFEAARYVNGNVVLVGSVSAAQIAGISR
Ga0187808_1061050423300017942Freshwater SedimentQYVGAGGPIVFNQSHNSTGAFEAAKYVSGNLVLVGAVSAAQIAAISR
Ga0193728_136124623300019890SoilFTAGRAALQADKQIQYVGAGGPIVFNHWHNSTGAFEAAKYVKGNPVLVGSVSAAQIAELS
Ga0210395_1111905313300020582SoilQIQYVGAGGPIVFNQWHNSTGAFEAAKYVSGNLDLVGSVTAAQIAAISK
Ga0210396_1009891443300021180SoilQIQYVGAGGAIVFNRWHNSTGAFEAARYVQGNVKLVGAVSAAQIAAISR
Ga0210393_1091562323300021401SoilGGPIVFNTSHNSTGAFEAAKYVSGNLVLAGSITAAQIAALSQ
Ga0210385_1028507433300021402SoilGRIVLTKSHNSTGAFEAAKYVSGNLVLVGAVSAAQIAAIAK
Ga0213878_1004698613300021444Bulk SoilDAGKQIQYVGAGGPIVFNEWHNSTGAFEAAKYESGNVDLVGSVSAAQIAALNR
Ga0210392_1023597733300021475SoilIQYVGAGGPIVFNHWHNSTGAFEAAKYVKGNPVLVGSVSAAQIAALSR
Ga0210402_1063420123300021478SoilAGKQIQYAGAGGPIVFNHWHNSTGAFEAARYVNGNLVLVGSVSAAQIAALSR
Ga0126371_1236879513300021560Tropical Forest SoilKAALLAGKQIQYVGAGGPIVFNQWHNSTGAFEAAKYVKGNPVLVGSVSAAQIATLSR
Ga0213853_1009912113300021861WatershedsALAAGKQIQYVGAGGPIVFTKSHNSTGAFEAAKYVSGNLVLVGAVSAAQIAAISR
Ga0242677_105337123300022713SoilYVGAGGPIVFNTSHNSTGAFEAAKYVSGNLVLAGSITAAQIAALSQ
Ga0242665_1015909423300022724SoilGPIVFDQSHNSTGAFEAAKYVNGNLVLVGSVSAAQIAAISR
Ga0247677_104734013300024245SoilIVFDQWHNSTGAFEAAKDVNGNPVLVGSVSAAQIAAISR
Ga0247692_102161413300024279SoilLAAGKQIQYVGAGGPIVFDQWHNSTGAFEAAKDVNGNPVLVGSVSAAQIAAISR
Ga0247668_100397213300024331SoilFDQWHNSTGAFEAVKDVNGNPVLVGSVSAAQIAAISR
Ga0207685_1018050423300025905Corn, Switchgrass And Miscanthus RhizosphereQIQYIGAGGPIAFNQWHNSTGAFEAAKYVKGSPVLVGSVSAAQIASLSR
Ga0207684_1174261413300025910Corn, Switchgrass And Miscanthus RhizosphereYVGAGGPIVFDHWHSSTGAFEAAKYVNGNPVLVGSVSAAQIAAISR
Ga0207659_1006008143300025926Miscanthus RhizosphereDQWHNSTGAFEAVKDVNGNPVLVGSVSAAQIAAISR
Ga0209055_123486913300026309SoilQIQYVGAGGPIVFDKWHNSTGAFEAAKYVNGNVALVGSVSAAQIAGISR
Ga0207862_103226523300027703Tropical Forest SoilVGAGGPIVFNQWHNSTGAFEAAKYVNGNLVLVGSVSAAQIAALSR
Ga0209166_1014680113300027857Surface SoilGAGGAIVFNTWHNSTGAFEAAKYVNGNPVLVGSVSAAQIAAISK
Ga0209590_1001231813300027882Vadose Zone SoilYVGAGGPIVFNHWHNSTGAFEAARYVKGNLVLVGSVSAAQIAALSR
Ga0209068_1064603013300027894WatershedsGKQVQYVGAGGPIVFNQSHNSTGAFEAAKYVNGNLVLVGAVSAAQIAAISK
Ga0222748_103187513300029701SoilGGPIVFTKSHNSTGAFEAAKYVSGNLVLVGAVTAAQIAAIAK
Ga0265462_1111234823300030738SoilGKQVQYVGAGGPIVFTPSHNSTGAFEAAQYVSGNVVLVGAVSAAQIAAISK
Ga0265773_104570523300031018SoilAAGKQIQYVGAGGPIVFTKSHNSTGAFEAAKYVSGNLVLVGAVSAAQIAAISK
Ga0170824_10428925413300031231Forest SoilKSHNSTGAFEAAKYVNGKLVLVGAVSAAQIAAISR
Ga0170820_1234160723300031446Forest SoilVQYVGAGGPIVFSKSHNSTGAFEAAKYVNGKLVLVGAVSAAQIAAISR
Ga0318571_1000139113300031549SoilKALQEGKQIQYVGAGGPIVFNRWHNSTGAFEAARYLNGNPSLVGSVSAAQIAAISR
Ga0318571_1029005713300031549SoilFNQWHNSTGAFEAAKYLKGNPAIVGSVSAAQIASLSR
Ga0307373_1014468233300031672SoilAGGPIVFNGWHNSTGAFEAAKYVHHRLVLVGSVSALQIAKLSH
Ga0318560_1035560813300031682SoilQEGKQIQYVGAGGPIVFNHWHNSTGAFEAARYLKGNPVLVGSVSAAQIAAISR
Ga0318501_1040951423300031736SoilYVGAGGPIVFNQWHNSTGAFEAAKDVNGNPVLVGSVSAAQIAALSG
Ga0307477_1089824413300031753Hardwood Forest SoilGGPIAFNQWHNSTGAFEAARYVKGSPVLVGSVSAAQIASLSR
Ga0318535_1007463133300031764SoilYVGAGGPIVFNQWHNSTGAFEAAKYLKGNPVIVGSVSAAQIASLSR
Ga0318535_1042619823300031764SoilALLAGKQIQYVGAGGPIVFNQWHNSTGAFEAAKDVNGNPVLVGSVSAAQIAALSG
Ga0318546_1041528223300031771SoilPIVFNQWHNSTGAFEAAKYVGGNQVLVGSVSAAQIAALSG
Ga0318547_1053727713300031781SoilFNQWHNSTGAFEAAKYVKGNPVLIGSVSAAQIATLSR
Ga0318550_1019895413300031797SoilAGGPIVFDHWHNSTGAFEAAKDVNGNPVLVGSVSAAQIAAISG
Ga0307478_1082239423300031823Hardwood Forest SoilPIVFNHWHNSTGAFEAAKYVKGNPVLVGSVTAAQIAALSR
Ga0318544_1009146813300031880SoilIQYVGAGGPIVFNQWHNSTGAFEAAKYLKGNPAIVGSVSAAQIASLSR
Ga0306921_1002176713300031912SoilVGAGGPIVFNQWHNSTGAFEAAKYLKGNPAIVGSVSAAQIASLSR
Ga0310913_1050247113300031945SoilIQYVGAGGPIVFNQWHNSTGAFEAAKYLKGTPVIVGSVSAAQIASLSR
Ga0310909_1027340613300031947SoilVGAGGPIVFNRWHNSTGAFEAARYLNGNPSLVGSVSAAQIAAISR
Ga0306926_1272931813300031954SoilQIQYVGAGGPIVFNQWHNSTGAFEAAKYLKGNPVIVGSVSAAQIASLSR
Ga0308176_1212280723300031996SoilGKQIQYVGAGGPIVFDKSHNSTGAFEAAKYVNGNLVLVGAVSAAQIAAISR
Ga0306922_1186269013300032001SoilAGGPIVFDQWHNSTGAFEAAKYVKGNPVLVGSVSAAQIATLSR
Ga0318506_1043910923300032052SoilGAGGPIVFNQWHNSTGAFEAAKDVNGNPVLVGSVSAAQIAALSG
Ga0318505_1020612313300032060SoilNQWHNSTGAFEAAKDVNGNPVLVGSVSAAQIAALSG
Ga0318510_1044452923300032064SoilLQEGKQIQYVGAGGPIVFNRWHNSTGAFEAARYLNGNPSLVGSVSAAQIAAISR
Ga0318553_1013783513300032068SoilAGKQIQYVGAGGPIVFNQWHNSTGAFEAAKYLKGNPVIVGSVSAAQIASLSR
Ga0318577_1015352213300032091SoilVFDQWHNSTGAFEAAKDVNGNPVLVGSVSAAQIAAISR
Ga0318540_1045352723300032094SoilQWHNSTGAFEAAKYLKGTPVIVGSVSAAQIASLSR
Ga0310914_1052628323300033289SoilGKQIQYVGAGGPIVFDQWHNSTGAFEAAKYVKGNPVLVGSVSAAQIAAISR


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