NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F101935

Metagenome Family F101935

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F101935
Family Type Metagenome
Number of Sequences 102
Average Sequence Length 49 residues
Representative Sequence MGLFRFAPATRREPSTDALIRIFQSEAAEIREDPEPARLRLTLHALAGLF
Number of Associated Samples 87
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 82.35 %
% of genes near scaffold ends (potentially truncated) 99.02 %
% of genes from short scaffolds (< 2000 bps) 93.14 %
Associated GOLD sequencing projects 82
AlphaFold2 3D model prediction Yes
3D model pTM-score0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (83.333 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(44.118 % of family members)
Environment Ontology (ENVO) Unclassified
(50.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(50.000 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 37.18%    β-sheet: 0.00%    Coil/Unstructured: 62.82%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.31
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 102 Family Scaffolds
PF00005ABC_tran 82.35
PF00664ABC_membrane 7.84
PF03412Peptidase_C39 3.92
PF08238Sel1 0.98
PF00486Trans_reg_C 0.98



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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A83.33 %
All OrganismsrootAll Organisms16.67 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002245|JGIcombinedJ26739_101749896Not Available521Open in IMG/M
3300003351|JGI26346J50198_1030552Not Available540Open in IMG/M
3300003505|JGIcombinedJ51221_10280582Not Available677Open in IMG/M
3300004635|Ga0062388_100370494All Organisms → cellular organisms → Bacteria → Proteobacteria1231Open in IMG/M
3300005332|Ga0066388_105496081Not Available642Open in IMG/M
3300005439|Ga0070711_100260991All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methyloferula → Methyloferula stellata1363Open in IMG/M
3300005441|Ga0070700_101971221All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales506Open in IMG/M
3300005574|Ga0066694_10485986Not Available576Open in IMG/M
3300005575|Ga0066702_10966613Not Available509Open in IMG/M
3300005764|Ga0066903_101972698Not Available1120Open in IMG/M
3300005764|Ga0066903_106406249Not Available614Open in IMG/M
3300006163|Ga0070715_10740277Not Available591Open in IMG/M
3300006804|Ga0079221_10281759All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria964Open in IMG/M
3300006854|Ga0075425_102699605Not Available548Open in IMG/M
3300009162|Ga0075423_12475503Not Available566Open in IMG/M
3300010048|Ga0126373_13057654Not Available521Open in IMG/M
3300010339|Ga0074046_10316359Not Available956Open in IMG/M
3300010358|Ga0126370_10715259Not Available882Open in IMG/M
3300010358|Ga0126370_12578908Not Available508Open in IMG/M
3300010360|Ga0126372_11473678Not Available716Open in IMG/M
3300012208|Ga0137376_11343827Not Available605Open in IMG/M
3300016270|Ga0182036_10753191Not Available791Open in IMG/M
3300016319|Ga0182033_10092527All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2201Open in IMG/M
3300016341|Ga0182035_11752361Not Available562Open in IMG/M
3300016357|Ga0182032_10902364Not Available751Open in IMG/M
3300016387|Ga0182040_10185186All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Pleomorphomonadaceae → Pleomorphomonas → unclassified Pleomorphomonas → Pleomorphomonas sp. COJ-581518Open in IMG/M
3300016404|Ga0182037_10353599Not Available1198Open in IMG/M
3300018433|Ga0066667_10372779Not Available1144Open in IMG/M
3300018468|Ga0066662_11790413Not Available643Open in IMG/M
3300018482|Ga0066669_10512004Not Available1040Open in IMG/M
3300020580|Ga0210403_10773985Not Available764Open in IMG/M
3300020580|Ga0210403_10896782Not Available699Open in IMG/M
3300020580|Ga0210403_10996522Not Available656Open in IMG/M
3300020581|Ga0210399_10803835Not Available768Open in IMG/M
3300020583|Ga0210401_10692758Not Available879Open in IMG/M
3300021170|Ga0210400_11593439Not Available516Open in IMG/M
3300021384|Ga0213876_10550171Not Available614Open in IMG/M
3300021420|Ga0210394_11650308Not Available538Open in IMG/M
3300021478|Ga0210402_10158481All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2064Open in IMG/M
3300021560|Ga0126371_12219930Not Available662Open in IMG/M
3300021560|Ga0126371_12647439Not Available608Open in IMG/M
3300021560|Ga0126371_12711408Not Available601Open in IMG/M
3300024288|Ga0179589_10436643Not Available603Open in IMG/M
3300025916|Ga0207663_11246134Not Available599Open in IMG/M
3300026374|Ga0257146_1030270Not Available879Open in IMG/M
3300026998|Ga0208369_1002093All Organisms → cellular organisms → Bacteria1583Open in IMG/M
3300027109|Ga0208603_1015497Not Available1238Open in IMG/M
3300027173|Ga0208097_1029701Not Available629Open in IMG/M
3300027635|Ga0209625_1005873All Organisms → cellular organisms → Bacteria → Proteobacteria2664Open in IMG/M
3300027812|Ga0209656_10256304Not Available825Open in IMG/M
3300027889|Ga0209380_10889081Not Available500Open in IMG/M
3300027903|Ga0209488_10473013Not Available921Open in IMG/M
3300031543|Ga0318516_10693444Not Available578Open in IMG/M
3300031545|Ga0318541_10555192Not Available642Open in IMG/M
3300031546|Ga0318538_10150249Not Available1231Open in IMG/M
3300031546|Ga0318538_10361374Not Available784Open in IMG/M
3300031561|Ga0318528_10374522Not Available764Open in IMG/M
3300031572|Ga0318515_10320709Not Available831Open in IMG/M
3300031668|Ga0318542_10317082Not Available799Open in IMG/M
3300031679|Ga0318561_10634760Not Available588Open in IMG/M
3300031680|Ga0318574_10908597Not Available516Open in IMG/M
3300031682|Ga0318560_10003981All Organisms → cellular organisms → Bacteria → Proteobacteria5754Open in IMG/M
3300031713|Ga0318496_10474185Not Available692Open in IMG/M
3300031720|Ga0307469_11112795Not Available743Open in IMG/M
3300031724|Ga0318500_10171075Not Available1031Open in IMG/M
3300031736|Ga0318501_10179247Not Available1102Open in IMG/M
3300031736|Ga0318501_10797309Not Available523Open in IMG/M
3300031747|Ga0318502_10853399Not Available553Open in IMG/M
3300031748|Ga0318492_10724318Not Available533Open in IMG/M
3300031753|Ga0307477_10636701Not Available717Open in IMG/M
3300031765|Ga0318554_10632797Not Available602Open in IMG/M
3300031769|Ga0318526_10275060Not Available689Open in IMG/M
3300031770|Ga0318521_10962843Not Available523Open in IMG/M
3300031771|Ga0318546_10874090Not Available633Open in IMG/M
3300031781|Ga0318547_10780632Not Available595Open in IMG/M
3300031792|Ga0318529_10139465Not Available1111Open in IMG/M
3300031797|Ga0318550_10361595Not Available703Open in IMG/M
3300031819|Ga0318568_10068355All Organisms → cellular organisms → Bacteria → Proteobacteria2081Open in IMG/M
3300031819|Ga0318568_10522649Not Available740Open in IMG/M
3300031821|Ga0318567_10323660Not Available870Open in IMG/M
3300031833|Ga0310917_10877156Not Available604Open in IMG/M
3300031890|Ga0306925_10664667Not Available1094Open in IMG/M
3300031890|Ga0306925_11906220Not Available565Open in IMG/M
3300031912|Ga0306921_12028379Not Available612Open in IMG/M
3300031912|Ga0306921_12534332Not Available531Open in IMG/M
3300031945|Ga0310913_10448238Not Available916Open in IMG/M
3300031946|Ga0310910_11003174Not Available652Open in IMG/M
3300032001|Ga0306922_10196560All Organisms → cellular organisms → Bacteria → Proteobacteria2164Open in IMG/M
3300032001|Ga0306922_10316170All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Pleomorphomonadaceae → Pleomorphomonas → unclassified Pleomorphomonas → Pleomorphomonas sp. COJ-581676Open in IMG/M
3300032001|Ga0306922_11530120Not Available666Open in IMG/M
3300032051|Ga0318532_10097150Not Available1037Open in IMG/M
3300032052|Ga0318506_10051699All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Pleomorphomonadaceae → Pleomorphomonas → unclassified Pleomorphomonas → Pleomorphomonas sp. COJ-581660Open in IMG/M
3300032054|Ga0318570_10300526Not Available730Open in IMG/M
3300032068|Ga0318553_10107629All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1425Open in IMG/M
3300032089|Ga0318525_10454481Not Available656Open in IMG/M
3300032091|Ga0318577_10351178Not Available705Open in IMG/M
3300032094|Ga0318540_10241801Not Available871Open in IMG/M
3300032180|Ga0307471_100839927All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1086Open in IMG/M
3300032205|Ga0307472_100774026Not Available873Open in IMG/M
3300032205|Ga0307472_101592031Not Available641Open in IMG/M
3300032261|Ga0306920_100213154All Organisms → cellular organisms → Bacteria → Proteobacteria2882Open in IMG/M
3300032261|Ga0306920_101342850Not Available1027Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil44.12%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil14.71%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil6.86%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil5.88%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil4.90%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.92%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil2.94%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil2.94%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil2.94%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil2.94%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.96%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.96%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.98%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil0.98%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil0.98%
Plant RootsHost-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots0.98%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300003351Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2EnvironmentalOpen in IMG/M
3300003505Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)EnvironmentalOpen in IMG/M
3300004635Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3EnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005439Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaGEnvironmentalOpen in IMG/M
3300005441Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaGEnvironmentalOpen in IMG/M
3300005574Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143EnvironmentalOpen in IMG/M
3300005575Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006163Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaGEnvironmentalOpen in IMG/M
3300006804Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200EnvironmentalOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010339Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300016270Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080EnvironmentalOpen in IMG/M
3300016319Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00HEnvironmentalOpen in IMG/M
3300016341Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170EnvironmentalOpen in IMG/M
3300016357Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000EnvironmentalOpen in IMG/M
3300016387Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176EnvironmentalOpen in IMG/M
3300016404Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082EnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300018482Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118EnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021170Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-MEnvironmentalOpen in IMG/M
3300021384Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9Host-AssociatedOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300024288Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungalEnvironmentalOpen in IMG/M
3300025916Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026374Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-AEnvironmentalOpen in IMG/M
3300026998Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF046 (SPAdes)EnvironmentalOpen in IMG/M
3300027109Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF008 (SPAdes)EnvironmentalOpen in IMG/M
3300027173Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF036 (SPAdes)EnvironmentalOpen in IMG/M
3300027635Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027812Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027889Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)EnvironmentalOpen in IMG/M
3300027903Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)EnvironmentalOpen in IMG/M
3300031543Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20EnvironmentalOpen in IMG/M
3300031545Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26EnvironmentalOpen in IMG/M
3300031546Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23EnvironmentalOpen in IMG/M
3300031561Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26EnvironmentalOpen in IMG/M
3300031572Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19EnvironmentalOpen in IMG/M
3300031668Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23EnvironmentalOpen in IMG/M
3300031679Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23EnvironmentalOpen in IMG/M
3300031680Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22EnvironmentalOpen in IMG/M
3300031682Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22EnvironmentalOpen in IMG/M
3300031713Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031724Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20EnvironmentalOpen in IMG/M
3300031736Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21EnvironmentalOpen in IMG/M
3300031747Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22EnvironmentalOpen in IMG/M
3300031748Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22EnvironmentalOpen in IMG/M
3300031753Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515EnvironmentalOpen in IMG/M
3300031765Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22EnvironmentalOpen in IMG/M
3300031769Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24EnvironmentalOpen in IMG/M
3300031770Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17EnvironmentalOpen in IMG/M
3300031771Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19EnvironmentalOpen in IMG/M
3300031781Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20EnvironmentalOpen in IMG/M
3300031792Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23EnvironmentalOpen in IMG/M
3300031797Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23EnvironmentalOpen in IMG/M
3300031819Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21EnvironmentalOpen in IMG/M
3300031821Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20EnvironmentalOpen in IMG/M
3300031833Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178EnvironmentalOpen in IMG/M
3300031890Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)EnvironmentalOpen in IMG/M
3300031912Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)EnvironmentalOpen in IMG/M
3300031945Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082EnvironmentalOpen in IMG/M
3300031946Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172EnvironmentalOpen in IMG/M
3300032001Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)EnvironmentalOpen in IMG/M
3300032051Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26EnvironmentalOpen in IMG/M
3300032052Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19EnvironmentalOpen in IMG/M
3300032054Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23EnvironmentalOpen in IMG/M
3300032068Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21EnvironmentalOpen in IMG/M
3300032089Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23EnvironmentalOpen in IMG/M
3300032091Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25EnvironmentalOpen in IMG/M
3300032094Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGIcombinedJ26739_10174989613300002245Forest SoilMRLFRFAPALRRNPPPDALIRIFQSEVSEVREDPEPAQLRVTLHVLAGLLTA
JGI26346J50198_103055213300003351Bog Forest SoilMGLFRFAPATRREPSPDALIQIFQSETAEIREGSEPVQLRLTLHALAG
JGIcombinedJ51221_1028058223300003505Forest SoilMRLFRFAPALRRNPPPDALIRVFQSEVSEVREDPEPAQLRVTLHVLAGLLAAL
Ga0062388_10037049433300004635Bog Forest SoilMQVSRFVPSLRPKPSTDRLIRLSQSESAEITEGPEPIELRLTL*
Ga0066388_10549608113300005332Tropical Forest SoilMRFFRFAAAPQRNPAPDALIRMFQSEVSEVREDAEPAQLR
Ga0070711_10026099123300005439Corn, Switchgrass And Miscanthus RhizosphereMDLFPSVLQRRREPSSAALIRIFQSETAEVRENPEPFQLRLTLYALAGLVVALVAVSL
Ga0070700_10197122113300005441Corn, Switchgrass And Miscanthus RhizosphereMGLFRFAPAPRHSAPPEALIRVFQSETGEIREDPEPAQLRLTLYALVGLGTALLAVSLFMQL
Ga0066694_1048598623300005574SoilMHLFRFAPALRRNPEPDALIRIFQSEVSEVREDPEPAQLRITLHVLA
Ga0066702_1096661313300005575SoilMLWFRFAPALRRDPPHRTLIRIFQSEVGEVREDPEPAQLRL
Ga0066903_10197269823300005764Tropical Forest SoilMGWFRLAPMRHEQSSDPLIRVFQSETAEIRENPEPARLRLTLHLLAVL
Ga0066903_10640624913300005764Tropical Forest SoilMGLYRFALAPRREPSPEPLIRIFQSETAEIREGREPAQVRLTLYAVAGLFVSLLAVSTVM
Ga0070715_1074027723300006163Corn, Switchgrass And Miscanthus RhizosphereMGLFRFAPAPRRNSSPETLIRIFQSETGEVRENPG
Ga0079221_1028175913300006804Agricultural SoilMGLFRFALGPRRNPSPDALIRVFQSESAEVREDPEPGQVRLTLYALAGLF
Ga0075425_10269960513300006854Populus RhizosphereMGLFRFAPAPRHSAPPEALIRVFQSETGEIREDPEPAQLRLTLYALVGLGT
Ga0075423_1247550313300009162Populus RhizosphereMGWFRFAPATPRESSADALIRVFQSETAEIREDPEPAQLRLTLPALAGLFVALL
Ga0126373_1305765413300010048Tropical Forest SoilLYRFALAHRREPSLDPLIRIFQSEAAEIREGREPAQVRLTLYAVAGLFVSLLAVSIVMPMNR
Ga0074046_1031635913300010339Bog Forest SoilMGLFRSAAALRREPSPDAVIRIFQSEAAEIREDPEPAQLRLTFYALAALFVAML
Ga0126370_1071525913300010358Tropical Forest SoilVPRHSSAPDALIRIFQSEVGEVRENPEPAQLRLTLYAMCGL
Ga0126370_1257890823300010358Tropical Forest SoilMGLFRFAPAPQRNPAPNALIRIFQSEVGEVREDPEPAQLRLTLYALAGLFVALLA
Ga0126372_1147367823300010360Tropical Forest SoilMGLFRSAPQRQREPPSAALIRIFQSETAEIREDPEPFQLRLTLHALAGLVVALVAVSVLMQMN
Ga0137376_1134382723300012208Vadose Zone SoilMGLFRCASASRDPSPDALIRVFQSETAEIREDSAPAQLRLTLYAFAGLLVSLLAVT
Ga0182036_1075319123300016270SoilMGLYRFALAPRREPPTDPLIRIFQSETAEIREGREPAQLRLTLYAAAGLFVSLLAVSIVM
Ga0182033_1009252713300016319SoilMGLFRFVPAPRREPSPDALIRVFQSETAEIREGPEPAQLRLTLYALAGLFAGLVA
Ga0182035_1175236123300016341SoilMGLFRFVPAPRREPSTDALIRIFQSETAEIREDPEPARLRLTLHALAGLFAALLVVS
Ga0182032_1090236423300016357SoilMGLFRFVAAVHEPSPDALIRIFQSETAQIREDSGPAQLRLTLHALAGLFVALLAVS
Ga0182040_1018518623300016387SoilMGLFRFALGPRRNASPDALIRIFQSETSEVREDPEPAQL
Ga0182037_1035359913300016404SoilMGFFRFAPALQRNQPADALIRVFQSEVGEVRENPEPAQLRITLHVLAGLFVVLLAVSF
Ga0066667_1037277913300018433Grasslands SoilMHLFRFAPALRRNPEPDALIRIFQSEVSEVREDPEPAQLRIT
Ga0066662_1179041313300018468Grasslands SoilMHLFRFAPALRRNPEPDALIRIFQSEVSEVREDPEPAQLRITLHVLAGLFIALL
Ga0066669_1051200413300018482Grasslands SoilMHLFRFAPALRRNPPPDALIRIFQSEVSEVREDPERAQLRVTLSALAGLFVALLAVSFF
Ga0210403_1077398523300020580SoilMHLFRFRFAPALRRNPSPDALIRIFQSEVSEVREDPEP
Ga0210403_1089678223300020580SoilMRLFRFAPVPQRSPPPDALIRIFQSEVGEVREDPEPAQLRITLHVLAGLFTALLA
Ga0210403_1099652223300020580SoilMGLFRFVPARRRNTSPDTLIRIFQSETGEVREDSEPAQL
Ga0210399_1080383513300020581SoilMGLFRFVPATRREPPTDALIRIFQSETAEIREGPEPAQLRLTLYAFTGLLAGLLAVSLV
Ga0210401_1069275813300020583SoilMNLFPSALQRRREPPSAALIRIFQSETAEIREDPEPFQLRLTLHALAGLVIALVAVSLLMQLNRVVAS
Ga0210400_1159343913300021170SoilMGWFRFAPATQREPSADALIRVFQSETAEIREDPEPAQLRLTLPALAGLFFA
Ga0213876_1055017123300021384Plant RootsMDLFRSALQRRREPPSAALIRIFQSETAEIREDPEPF
Ga0210394_1165030823300021420SoilMRLFRFAPVPQRSPPPDALIRIFQSEVGEVREDPEPAQLRITLHVLAGLFTA
Ga0210402_1015848123300021478SoilMRLFRFAPALRRNPPPDALIRIFQSEVSEVREDPEPAQLRVTLHVLAG
Ga0126371_1221993013300021560Tropical Forest SoilMALLRFVPAARREGSPDALLRVFQSETGEIREDPEPAQLRITLYAVV
Ga0126371_1264743913300021560Tropical Forest SoilMGLFSFASIRQREPSTDALIRIFQSETAEIREDPEPARLRFTLHA
Ga0126371_1271140823300021560Tropical Forest SoilMGLYRFALAPRREPSLDPLIRIFQSETAEIREGREPAQLRITL
Ga0179589_1043664313300024288Vadose Zone SoilMDLFPSALQRRREPSSAALIRIFQSETAEVREDPEPFQLRLTLHALAGLVVALVAVSLL
Ga0207663_1124613423300025916Corn, Switchgrass And Miscanthus RhizosphereMGLFRFAPAPQRKPPPNALIRIFQSEVDEVREDPEPAQLRLTLYALAGLF
Ga0257146_103027013300026374SoilMGLFRFVPARRRNTSPDSLIRIFQSETGEVREDCEPAQLRVTLHVLVGLLVAM
Ga0208369_100209323300026998Forest SoilMHLFRFRFAPALRRNPSPDALIRIFQSEVSEVREDPEPAQLRVTLHVLAG
Ga0208603_101549723300027109Forest SoilMHLFRFRFAPALRRNPPPDALIRIFQSEVSEVREDPEPAQLR
Ga0208097_102970123300027173Forest SoilMNLFPSALQRRREPPSAALIRIFQSETAEIREDPEPFQL
Ga0209625_100587313300027635Forest SoilMHLFRFRFAPALRRNPPPDALIRIFQSEVNEVREDPE
Ga0209656_1025630413300027812Bog Forest SoilMGLFRFAPAQQRNPPPDALIRIFQSEVGEVREDPEPAQLRLTLHLL
Ga0209380_1088908113300027889SoilMNLFPSALQRRREPPSAALIRIFQSETAEIREDPEPFQLRLTLHALAGLVIALVAVSL
Ga0209488_1047301313300027903Vadose Zone SoilMGLFRFAPAPRRNSSPETLIRIFQSETGEVRADPEPAQLRLTLHALAGL
Ga0318516_1069344423300031543SoilMGLFRFVLGTRRNSSPDALIRIFQSESAEVEEDPEPAQTRLTLFTL
Ga0318541_1055519223300031545SoilMGLFRFALGPRRNSSPDVLIRIFQSESAEVQEDPEPAQTRLTLFTLAGLFI
Ga0318538_1015024923300031546SoilMGLFRFALGPRRNSSPDVLIRIFQSESAEVQEDPEPAQTRLTLFTLAGLF
Ga0318538_1036137413300031546SoilMGFFRFAPAVQRKPPADALTRVFQSEVGEVREDSEPAQLRITLHVLTGLLIALLAVS
Ga0318528_1037452223300031561SoilMGLFRFALGPRRNSSPDALIRIFQSESAEVQEDPEPAQTRIT
Ga0318515_1032070913300031572SoilMGLFRFAPAVQREPSPDALIRIFQSETAEIREDSEPAQLRLTLQA
Ga0318542_1031708223300031668SoilMGFFRFAPAPRRNPEPDALVRIFRSEVDEVREDPEPAQLRLTLYVLAGLFLALLGVSIFM
Ga0318561_1063476013300031679SoilMGFFRFAPAPRRNPEPDALVRIFRSEVDEVREDPEPAQLRLTLYVLAGLF
Ga0318574_1090859723300031680SoilMGFFRFAPAVQRKPPADALTRVFQSEVGEVREDSEPAQLRITLHVLTGLLIALLAV
Ga0318560_1000398163300031682SoilMGLRRFVPALRPEPSTDALIRIFQSESAEIREDPEPARLRLTVHALGGLFAALLAVSLV
Ga0318496_1047418523300031713SoilMGLFRFVPAPRREPSTDALIRIFQSETAEIREDPEPARLRLTL
Ga0307469_1111279523300031720Hardwood Forest SoilMGWFRFAPATPREPSADALIRVFQSETAEIREDPEPA
Ga0318500_1017107523300031724SoilMGLFRFVPAPRREPSTDALIRIFQSETAEIREDPEPARLRLTLHALAGLFAALLVVSAVMPMD
Ga0318501_1017924713300031736SoilMGLFRFVLGTRRNSSPDALIRIFQSESAEVQEDPEPAQTRITLYALAGLFVALVAVTVFM
Ga0318501_1079730913300031736SoilMGLYRFALAPRREPPTDPLIRIFQSETAEIREGREPAQ
Ga0318502_1085339923300031747SoilMGFFRFAPAPRRNPEPDALVRIFRSEVDEVREDPEPAQLRLTLYV
Ga0318492_1072431823300031748SoilMGFFRFAPAVQRKPPADALTRVFQSEVGEVREDSEPAQL
Ga0307477_1063670123300031753Hardwood Forest SoilMGLRRFVPALRPEPSTDALIRTFQSESAEIREDPEPARLRLTLHALGGLFA
Ga0318554_1063279713300031765SoilMGSFRLAPMRHEQSSDPLIRVFQSETAEIREDPEPARLRLTLHLLAVLFLSLLAVSVFMP
Ga0318526_1027506013300031769SoilMGLRRFVPALQPEPSTDALIRIFQSESAEIREDPEPARLRLTLHALGGLFA
Ga0318521_1096284323300031770SoilMGFFRFAPAPRRNPEPDALVRIFRSEVDEVREDPEPAQLRLTLYVLAGLFLALLGVSIV
Ga0318546_1087409023300031771SoilMGLFRFALGPRRNSSPDVLIRIFQSESAEVQEDPEPAQT
Ga0318547_1078063223300031781SoilMGLFSFAPIPRREPSTDALIRIFQSETAEIREDAE
Ga0318529_1013946513300031792SoilMGLRRFVPALQPEPSTDALIRIFQSESAEIREDPE
Ga0318550_1036159533300031797SoilMGLFRFALGPRRNASPDALIRIFQSETSEVREDPEPAQLRLT
Ga0318568_1006835523300031819SoilMGSFRLAPMRHEQSSDPLIRVFQSETAEIREDPEPARLRLTLHLLAVLFLSLLAV
Ga0318568_1052264913300031819SoilMGLFRFALGPRRNASPDALIRIFQSETSEVREDPEPAQLRLTLYAVAGL
Ga0318567_1032366023300031821SoilMGLFRFVPAPRREPSTDALIRIFQSETAEIRECPEPAQLRLTLYAFTG
Ga0310917_1087715623300031833SoilMGFFRFAPAVQRKPPADALTRVFQSEVGEVREDSEPAQLRITLHVLTGLLIALLAVSVFM
Ga0306925_1066466723300031890SoilMGFFRFAPAVQRKPPADALTRVFQSEVGEVREDSEPAQLRITLHVLTGL
Ga0306925_1190622013300031890SoilMGFWRFVPALQRNPERDALLRIFRSEVDEVRESREPGQLRLTLYV
Ga0306921_1202837913300031912SoilMGLYRFALAPRREPSPDPLIRIFQSETAEIREGREPAQIRLTLFGVAGLFV
Ga0306921_1253433223300031912SoilMGLFRFALGPRRNSSPDVLIRIFQSESAEVQEDPEPAQTRLTLFTLAGL
Ga0310913_1044823813300031945SoilMGLFRFVPAPRREPSTDALIRIFQSETAEIREDPEPARLRLTLHALAGLFAALLVVSAVMPMDR
Ga0310910_1100317433300031946SoilMGLFRFALGPRRNASPDALIRIFQSETSEVREDPEPAQLRLTLYA
Ga0306922_1019656023300032001SoilMGLFRFVLGTRRNSSPDALIRIFQSESAEVQEDPAPAQTRLTLY
Ga0306922_1031617023300032001SoilMGFFRFAPAVQRKPPADALTRVFQSEVGEVREDSEPAQLRITLHVL
Ga0306922_1153012023300032001SoilMGLYRFALAPRREPPTDPLIRIFQSETAEIREGREPAQLRLTLYAAA
Ga0318532_1009715013300032051SoilMGLFRFVPAPRREPSTDALIRIFQSETAEIREDPEPARLRLTLHA
Ga0318506_1005169923300032052SoilMGLRRFVPALQPEPSTDALIRIFQSESAEIREDPEPARLRLTLHALGGLFAALLAVSL
Ga0318570_1030052623300032054SoilMGLFRFALGPRRNSSPDALIRIFQSESAEVQEDPE
Ga0318553_1010762923300032068SoilMGLFRFAPATRREPSTDALIRIFQSEAAEIREDPEPARLRLTLHALAGLF
Ga0318525_1045448123300032089SoilMGLRRFVPALQPEPSTDALIRIFQSESAEIREDPEPARLRLTL
Ga0318577_1035117813300032091SoilMGLFRFVLGTRRNSSPDALIRIFQSESAEVQEDPEPAQTRLTLYTLAGLFIALVAVTVFM
Ga0318540_1024180123300032094SoilMGLFRFVLGTRRNSSPDALIRIFQSESAEVQEDPEPAQTRLTLYT
Ga0307471_10083992723300032180Hardwood Forest SoilMGLFRFAPAPQRKPPPNALIRIFQSEVDEVREDPEPAQLRLTLYALAGLFVALLAISVFM
Ga0307472_10077402613300032205Hardwood Forest SoilMGWFHFAPATRREPSADALIRVFQSETAEIREDPEPAQLRLTLPALAGLFVA
Ga0307472_10159203123300032205Hardwood Forest SoilMGLFRFAPATPPEPSADALIRIFQSETAEIREFPEP
Ga0306920_10021315433300032261SoilMGFFRFAPAPRRNPEPDALLRIFRSEVDEIREDAEPAQLRLTLYVLAGLFLALLGVS
Ga0306920_10134285013300032261SoilMRHEQSSDPLIRVFQSETAEIREDPEPARLRLTLHLLAVLFLS


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