NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F101839

Metagenome Family F101839

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F101839
Family Type Metagenome
Number of Sequences 102
Average Sequence Length 47 residues
Representative Sequence MSTDINNEKLISRYLLGELPEEQQVEIEDRAFSDKDYLAGITAVENDL
Number of Associated Samples 75
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 52.94 %
% of genes near scaffold ends (potentially truncated) 98.04 %
% of genes from short scaffolds (< 2000 bps) 92.16 %
Associated GOLD sequencing projects 67
AlphaFold2 3D model prediction Yes
3D model pTM-score0.56

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (98.039 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere
(14.706 % of family members)
Environment Ontology (ENVO) Unclassified
(63.725 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(69.608 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 48.68%    β-sheet: 0.00%    Coil/Unstructured: 51.32%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.56
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 102 Family Scaffolds
PF13414TPR_11 13.73
PF13432TPR_16 4.90
PF13424TPR_12 1.96
PF08534Redoxin 0.98
PF02472ExbD 0.98
PF01565FAD_binding_4 0.98

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 102 Family Scaffolds
COG0848Biopolymer transport protein ExbDIntracellular trafficking, secretion, and vesicular transport [U] 0.98


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms98.04 %
UnclassifiedrootN/A1.96 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000363|ICChiseqgaiiFebDRAFT_13763626All Organisms → cellular organisms → Bacteria → Acidobacteria763Open in IMG/M
3300000890|JGI11643J12802_11469961All Organisms → cellular organisms → Bacteria → Acidobacteria973Open in IMG/M
3300003322|rootL2_10231611All Organisms → cellular organisms → Bacteria → Acidobacteria4151Open in IMG/M
3300004114|Ga0062593_100047685All Organisms → cellular organisms → Bacteria2638Open in IMG/M
3300004156|Ga0062589_101039711All Organisms → cellular organisms → Bacteria → Acidobacteria769Open in IMG/M
3300004157|Ga0062590_101836546All Organisms → cellular organisms → Bacteria → Acidobacteria623Open in IMG/M
3300004479|Ga0062595_102036730All Organisms → cellular organisms → Bacteria → Acidobacteria556Open in IMG/M
3300004643|Ga0062591_101236124All Organisms → cellular organisms → Bacteria → Acidobacteria730Open in IMG/M
3300005290|Ga0065712_10812019All Organisms → cellular organisms → Bacteria → Acidobacteria509Open in IMG/M
3300005293|Ga0065715_10517992All Organisms → cellular organisms → Bacteria → Acidobacteria766Open in IMG/M
3300005294|Ga0065705_10295646All Organisms → cellular organisms → Bacteria → Acidobacteria1066Open in IMG/M
3300005331|Ga0070670_100391189All Organisms → cellular organisms → Bacteria1226Open in IMG/M
3300005331|Ga0070670_101129015All Organisms → cellular organisms → Bacteria → Acidobacteria715Open in IMG/M
3300005334|Ga0068869_100185479All Organisms → cellular organisms → Bacteria1633Open in IMG/M
3300005341|Ga0070691_10978820All Organisms → cellular organisms → Bacteria → Acidobacteria527Open in IMG/M
3300005353|Ga0070669_101058947All Organisms → cellular organisms → Bacteria → Acidobacteria697Open in IMG/M
3300005366|Ga0070659_100355211All Organisms → cellular organisms → Bacteria1230Open in IMG/M
3300005438|Ga0070701_10109192All Organisms → cellular organisms → Bacteria1543Open in IMG/M
3300005564|Ga0070664_101869901All Organisms → cellular organisms → Bacteria → Acidobacteria569Open in IMG/M
3300005564|Ga0070664_101887244All Organisms → cellular organisms → Bacteria → Acidobacteria567Open in IMG/M
3300005577|Ga0068857_100282664All Organisms → cellular organisms → Bacteria1527Open in IMG/M
3300005577|Ga0068857_101484658All Organisms → cellular organisms → Bacteria → Acidobacteria660Open in IMG/M
3300005577|Ga0068857_102416727All Organisms → cellular organisms → Bacteria → Acidobacteria516Open in IMG/M
3300005617|Ga0068859_100947409All Organisms → cellular organisms → Bacteria → Acidobacteria944Open in IMG/M
3300005617|Ga0068859_102139867All Organisms → cellular organisms → Bacteria → Acidobacteria617Open in IMG/M
3300005618|Ga0068864_100192662All Organisms → cellular organisms → Bacteria → Acidobacteria1870Open in IMG/M
3300005719|Ga0068861_100504204All Organisms → cellular organisms → Bacteria → Acidobacteria1095Open in IMG/M
3300005841|Ga0068863_102128338All Organisms → cellular organisms → Bacteria → Acidobacteria571Open in IMG/M
3300006169|Ga0082029_1013349All Organisms → cellular organisms → Bacteria → Acidobacteria644Open in IMG/M
3300006844|Ga0075428_100961238All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia905Open in IMG/M
3300006852|Ga0075433_10474981All Organisms → cellular organisms → Bacteria → Acidobacteria1101Open in IMG/M
3300006918|Ga0079216_10029569All Organisms → cellular organisms → Bacteria2179Open in IMG/M
3300006954|Ga0079219_10103943All Organisms → cellular organisms → Bacteria1403Open in IMG/M
3300006954|Ga0079219_11475588All Organisms → cellular organisms → Bacteria → Acidobacteria614Open in IMG/M
3300009098|Ga0105245_12433610All Organisms → cellular organisms → Bacteria → Acidobacteria577Open in IMG/M
3300009101|Ga0105247_11381824All Organisms → cellular organisms → Bacteria → Acidobacteria569Open in IMG/M
3300009148|Ga0105243_10462554All Organisms → cellular organisms → Bacteria → Acidobacteria1193Open in IMG/M
3300009174|Ga0105241_10500112All Organisms → cellular organisms → Bacteria → Acidobacteria1084Open in IMG/M
3300009174|Ga0105241_11309282All Organisms → cellular organisms → Bacteria → Acidobacteria690Open in IMG/M
3300009174|Ga0105241_11346818All Organisms → cellular organisms → Bacteria → Acidobacteria681Open in IMG/M
3300009174|Ga0105241_12259371Not Available541Open in IMG/M
3300009174|Ga0105241_12460672All Organisms → cellular organisms → Bacteria → Acidobacteria521Open in IMG/M
3300009176|Ga0105242_10012256All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes6598Open in IMG/M
3300009551|Ga0105238_11580149All Organisms → cellular organisms → Bacteria → Acidobacteria686Open in IMG/M
3300009553|Ga0105249_12506344All Organisms → cellular organisms → Bacteria → Acidobacteria588Open in IMG/M
3300009553|Ga0105249_12567534All Organisms → cellular organisms → Bacteria → Acidobacteria582Open in IMG/M
3300009553|Ga0105249_13128983All Organisms → cellular organisms → Bacteria → Acidobacteria532Open in IMG/M
3300009553|Ga0105249_13535321All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium503Open in IMG/M
3300010037|Ga0126304_10845015All Organisms → cellular organisms → Bacteria → Acidobacteria622Open in IMG/M
3300010040|Ga0126308_10251069All Organisms → cellular organisms → Bacteria → Acidobacteria1150Open in IMG/M
3300010040|Ga0126308_11110887All Organisms → cellular organisms → Bacteria → Acidobacteria557Open in IMG/M
3300010042|Ga0126314_11345482All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium536Open in IMG/M
3300010044|Ga0126310_10357303All Organisms → cellular organisms → Bacteria → Acidobacteria1026Open in IMG/M
3300010045|Ga0126311_11110260All Organisms → cellular organisms → Bacteria → Acidobacteria651Open in IMG/M
3300010046|Ga0126384_10535392All Organisms → cellular organisms → Bacteria → Acidobacteria1015Open in IMG/M
3300010166|Ga0126306_11870264All Organisms → cellular organisms → Bacteria → Acidobacteria503Open in IMG/M
3300010371|Ga0134125_11660297All Organisms → cellular organisms → Bacteria → Acidobacteria695Open in IMG/M
3300010375|Ga0105239_10750744All Organisms → cellular organisms → Bacteria → Acidobacteria1117Open in IMG/M
3300010397|Ga0134124_11614077All Organisms → cellular organisms → Bacteria → Acidobacteria679Open in IMG/M
3300010399|Ga0134127_11207040All Organisms → cellular organisms → Bacteria → Acidobacteria823Open in IMG/M
3300010399|Ga0134127_11209898All Organisms → cellular organisms → Bacteria → Acidobacteria822Open in IMG/M
3300010399|Ga0134127_12476249All Organisms → cellular organisms → Bacteria → Acidobacteria599Open in IMG/M
3300010399|Ga0134127_12679110All Organisms → cellular organisms → Bacteria → Acidobacteria578Open in IMG/M
3300010403|Ga0134123_11372088All Organisms → cellular organisms → Bacteria → Acidobacteria746Open in IMG/M
3300011119|Ga0105246_10402638All Organisms → cellular organisms → Bacteria → Acidobacteria1137Open in IMG/M
3300011119|Ga0105246_11713251All Organisms → cellular organisms → Bacteria → Acidobacteria598Open in IMG/M
3300011119|Ga0105246_11927405All Organisms → cellular organisms → Bacteria568Open in IMG/M
3300013102|Ga0157371_11558242All Organisms → cellular organisms → Bacteria → Acidobacteria516Open in IMG/M
3300013297|Ga0157378_11161496All Organisms → cellular organisms → Bacteria → Acidobacteria811Open in IMG/M
3300013297|Ga0157378_11376692All Organisms → cellular organisms → Bacteria → Acidobacteria748Open in IMG/M
3300013306|Ga0163162_12624660All Organisms → cellular organisms → Bacteria → Acidobacteria580Open in IMG/M
3300013308|Ga0157375_11051946All Organisms → cellular organisms → Bacteria → Acidobacteria951Open in IMG/M
3300013308|Ga0157375_12969986All Organisms → cellular organisms → Bacteria → Acidobacteria566Open in IMG/M
3300014325|Ga0163163_11208645All Organisms → cellular organisms → Bacteria → Acidobacteria818Open in IMG/M
3300014326|Ga0157380_11223015All Organisms → cellular organisms → Bacteria → Acidobacteria796Open in IMG/M
3300014745|Ga0157377_10476059All Organisms → cellular organisms → Bacteria → Acidobacteria868Open in IMG/M
3300014968|Ga0157379_12657844All Organisms → cellular organisms → Bacteria → Acidobacteria502Open in IMG/M
3300018476|Ga0190274_13845164Not Available508Open in IMG/M
3300025912|Ga0207707_11484287All Organisms → cellular organisms → Bacteria → Acidobacteria538Open in IMG/M
3300025918|Ga0207662_10186606All Organisms → cellular organisms → Bacteria → Acidobacteria1336Open in IMG/M
3300025923|Ga0207681_10797659All Organisms → cellular organisms → Bacteria → Acidobacteria789Open in IMG/M
3300025925|Ga0207650_10316740All Organisms → cellular organisms → Bacteria → Acidobacteria1277Open in IMG/M
3300025926|Ga0207659_11543733All Organisms → cellular organisms → Bacteria → Acidobacteria567Open in IMG/M
3300025935|Ga0207709_10377050All Organisms → cellular organisms → Bacteria → Acidobacteria1078Open in IMG/M
3300025935|Ga0207709_10931692All Organisms → cellular organisms → Bacteria → Acidobacteria707Open in IMG/M
3300025936|Ga0207670_11906336All Organisms → cellular organisms → Bacteria → Acidobacteria505Open in IMG/M
3300025938|Ga0207704_11961450All Organisms → cellular organisms → Bacteria → Acidobacteria504Open in IMG/M
3300026035|Ga0207703_10146093All Organisms → cellular organisms → Bacteria → Acidobacteria2057Open in IMG/M
3300026035|Ga0207703_10321456All Organisms → cellular organisms → Bacteria → Acidobacteria1417Open in IMG/M
3300026035|Ga0207703_11033065All Organisms → cellular organisms → Bacteria → Acidobacteria789Open in IMG/M
3300026088|Ga0207641_10284690All Organisms → cellular organisms → Bacteria → Acidobacteria1556Open in IMG/M
3300026095|Ga0207676_10144098All Organisms → cellular organisms → Bacteria → Acidobacteria2044Open in IMG/M
3300026095|Ga0207676_10900290All Organisms → cellular organisms → Bacteria → Acidobacteria868Open in IMG/M
3300026095|Ga0207676_12044783All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium571Open in IMG/M
3300026116|Ga0207674_11310766All Organisms → cellular organisms → Bacteria → Acidobacteria694Open in IMG/M
3300026118|Ga0207675_101958743All Organisms → cellular organisms → Bacteria → Acidobacteria604Open in IMG/M
3300027639|Ga0209387_1048513All Organisms → cellular organisms → Bacteria → Acidobacteria927Open in IMG/M
3300028381|Ga0268264_10070844All Organisms → cellular organisms → Bacteria2952Open in IMG/M
3300028381|Ga0268264_10119144All Organisms → cellular organisms → Bacteria → Acidobacteria2324Open in IMG/M
3300031824|Ga0307413_10316789All Organisms → cellular organisms → Bacteria → Acidobacteria1190Open in IMG/M
3300031911|Ga0307412_10508834All Organisms → cellular organisms → Bacteria → Acidobacteria1004Open in IMG/M
3300032074|Ga0308173_10915703All Organisms → cellular organisms → Bacteria → Acidobacteria811Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere14.71%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere7.84%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil6.86%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil6.86%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere6.86%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil4.90%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere4.90%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere4.90%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere4.90%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil3.92%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere3.92%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere2.94%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.96%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere1.96%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere1.96%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere1.96%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere1.96%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.96%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere1.96%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.96%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.98%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil0.98%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere0.98%
Termite NestEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest0.98%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil0.98%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.98%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.98%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere0.98%
Sugarcane Root And Bulk SoilHost-Associated → Plants → Rhizome → Unclassified → Unclassified → Sugarcane Root And Bulk Soil0.98%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.98%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.98%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000363Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000890Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300003322Sugarcane root Sample L2Host-AssociatedOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300004157Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2EnvironmentalOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300004643Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3EnvironmentalOpen in IMG/M
3300005290Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1Host-AssociatedOpen in IMG/M
3300005293Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1Host-AssociatedOpen in IMG/M
3300005294Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk SoilEnvironmentalOpen in IMG/M
3300005331Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaGHost-AssociatedOpen in IMG/M
3300005334Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2Host-AssociatedOpen in IMG/M
3300005341Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaGEnvironmentalOpen in IMG/M
3300005353Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaGHost-AssociatedOpen in IMG/M
3300005366Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaGHost-AssociatedOpen in IMG/M
3300005438Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaGEnvironmentalOpen in IMG/M
3300005564Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaGHost-AssociatedOpen in IMG/M
3300005577Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2Host-AssociatedOpen in IMG/M
3300005617Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2Host-AssociatedOpen in IMG/M
3300005618Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2Host-AssociatedOpen in IMG/M
3300005719Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2Host-AssociatedOpen in IMG/M
3300005841Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2Host-AssociatedOpen in IMG/M
3300006169Termite nest microbial communities from Madurai, IndiaEnvironmentalOpen in IMG/M
3300006844Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2Host-AssociatedOpen in IMG/M
3300006852Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2Host-AssociatedOpen in IMG/M
3300006918Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100EnvironmentalOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300009098Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaGHost-AssociatedOpen in IMG/M
3300009101Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaGHost-AssociatedOpen in IMG/M
3300009148Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaGHost-AssociatedOpen in IMG/M
3300009174Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaGHost-AssociatedOpen in IMG/M
3300009176Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaGHost-AssociatedOpen in IMG/M
3300009551Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaGHost-AssociatedOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300010037Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25EnvironmentalOpen in IMG/M
3300010040Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55EnvironmentalOpen in IMG/M
3300010042Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105BEnvironmentalOpen in IMG/M
3300010044Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60EnvironmentalOpen in IMG/M
3300010045Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61EnvironmentalOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010166Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27EnvironmentalOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300010375Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaGHost-AssociatedOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300011119Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaGHost-AssociatedOpen in IMG/M
3300013102Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaGHost-AssociatedOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300013306Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaGHost-AssociatedOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300014745Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaGHost-AssociatedOpen in IMG/M
3300014968Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaGHost-AssociatedOpen in IMG/M
3300018476Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 TEnvironmentalOpen in IMG/M
3300025912Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025918Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025923Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025925Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025926Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025935Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025936Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025938Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026035Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026088Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026095Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026116Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026118Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300027639Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control (SPAdes)EnvironmentalOpen in IMG/M
3300028381Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300031824Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2Host-AssociatedOpen in IMG/M
3300031911Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1Host-AssociatedOpen in IMG/M
3300032074Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
ICChiseqgaiiFebDRAFT_1376362613300000363SoilMEMAANLNSEKILAQYLLGQLPEEQQVEIEDRAFQDKEYLASITSVENDLI
JGI11643J12802_1146996133300000890SoilMVANPFSEKLIAQYLLGELPEEKQVEIEDRAFGDAELMASITAVENDLIDEYVREEMPASDR
rootL2_1023161123300003322Sugarcane Root And Bulk SoilMSADLKSEKLITQYLLGELPEEQQVEIEDRAFSDQDFLASITSVENDLID
Ga0062593_10004768543300004114SoilMADLNSEKLITQYLLGELPEEQQIEIEDRAFGDKEFLANITA
Ga0062589_10103971113300004156SoilMAADLNNEKLIARYLLGELPEEQQVEIEDRAFTDKDYLASITAVENDLIDEYVRHE
Ga0062590_10183654623300004157SoilMSTDINNEKLISRYLLGELPEDQQVEIEDRAFSDKDYLASITAVENDLI
Ga0062595_10203673013300004479SoilMSVDINNEKLIVRYLLGELPEEQQVEIEDRAFSDKDYLASIT
Ga0062591_10123612423300004643SoilLRETSKPMTTDIKNETLIARYLLGELPEEQQVEIEDRAFS
Ga0065712_1081201923300005290Miscanthus RhizosphereMATDLNSESVIARYLLGELSEEQQVEIEDRAFADHKYLASITAVENDLIDE
Ga0065715_1051799213300005293Miscanthus RhizosphereMATDLNNETLIARYLLGELSEEQQIEIEDRAFADTDYLASVTAVENDLIDEYV
Ga0065705_1029564613300005294Switchgrass RhizosphereMATDLNNESVIARYLLGELSEEQQVEIEDRAFADQKYLASITAVENDLIDE
Ga0070670_10039118913300005331Switchgrass RhizosphereMASGRSPTEHMSANLNETLIARYLLGELSDDQQVEIEDRAFSDKEYLATIT
Ga0070670_10112901523300005331Switchgrass RhizosphereMATDLNSENLIARYLLGELSEEQQVEIEDRAFADQKYLAS
Ga0068869_10018547933300005334Miscanthus RhizosphereMATDLNSESVIARYLLGELSEEQQVEIEDRAFADQKYLAS
Ga0070691_1097882023300005341Corn, Switchgrass And Miscanthus RhizosphereMSVDNEKLISRYLLGELPEEQQVEIEDRAFSDKDYLATITTVEND
Ga0070669_10105894713300005353Switchgrass RhizosphereMEMAANLNSEKILAQYLLGQLPEEQQVEIEDRAFQDKEYLASITSVENDL
Ga0070659_10035521113300005366Corn RhizosphereMSTDINNEKLISRYLLGELPEEQQVEIEDRAFSDKDYVASITAVENDL
Ga0070701_1010919233300005438Corn, Switchgrass And Miscanthus RhizosphereMATDLMSEKLINRYLLGELPEEQQVEIEDRAFSDQEFMAIITAAENDLIDEY
Ga0070664_10186990113300005564Corn RhizosphereMSVNNEKLISQYLLGELPEEQQVEIEDRAFSDTEYLASITAVEND
Ga0070664_10188724413300005564Corn RhizosphereMSVENETLIAQYLLGELPEEQQVQIEDRAFADKDYLATITAVENDLIDEYV
Ga0068857_10028266413300005577Corn RhizosphereMSVNNEKLISQYLLGELPEEQQVEIEDRAFSDTEYLASITAVENDLIDEYVRGE
Ga0068857_10148465813300005577Corn RhizosphereMEMAANLNSEKILAQYLLGQLPEEQQVEIEDRAFQDKEYLASITSVE
Ga0068857_10241672713300005577Corn RhizosphereMSTDINNEKLISRYLLGELPEEQQVEIEDRAFSDNDYLAGITTVENDLIDEYVR
Ga0068859_10094740923300005617Switchgrass RhizosphereMATDLNNETLIARYLLGELSEEQQVEIEDRAFEDKDYLASITAVENDLIDEYV
Ga0068859_10213986723300005617Switchgrass RhizosphereMSVDNEKLISRYLLGELPEEQQVEIEDRAFSDKDYLATI
Ga0068864_10019266213300005618Switchgrass RhizosphereMSPDLKSENLITQYLLGELREEQQVEIEDRAFSDQEFM
Ga0068861_10050420413300005719Switchgrass RhizosphereMSVDNEKLISRYLLGELPEEQQVEIEDRAFSDKDYLATITTV
Ga0068863_10212833823300005841Switchgrass RhizosphereMADLNSEKLITQYLLGELPEEQQIEIEDRAFGDKEFLANITAV
Ga0082029_101334923300006169Termite NestMSADLKSEKLIAQYLLGELTEEQQVEIEDRAFGDDA
Ga0075428_10096123813300006844Populus RhizosphereMSADVNNEKLIAQYLLGELPEEQQVEIEDRAFADKEYLASITAVENDLIDEYARNELSESERR
Ga0075433_1047498113300006852Populus RhizosphereMATDLNSENVIARYLLGELSEEQQVQIEDRAFADQKYLASITAV
Ga0079216_1002956943300006918Agricultural SoilMAAEPNSEKLIAQYLLGELGEEQQVEIEDRAFSDPEFLAS
Ga0079219_1010394333300006954Agricultural SoilMSNDINQEKLISQYLLGELPEEQQVEIEDRAFSDKEYLAGITAVENDLID
Ga0079219_1147558813300006954Agricultural SoilMAADLNNEKLIAQYLLGDLPEEQQVAIEDRAFSDNDYLAL
Ga0105245_1243361023300009098Miscanthus RhizosphereMAADFKNINNEKLIAQYLLGELPEEQQVEIEDRAFSDKDYLASITAVENDLVDEY
Ga0105247_1138182423300009101Switchgrass RhizosphereMSVNNETLIARYLLGELPEEQQVEIEDRAFSDKDYLATITTVENDLIDEYV
Ga0105243_1046255433300009148Miscanthus RhizosphereMMSVDNEKLIAQYLLGELPEEQQVELEDRAFSDREYLASITAVENDLIDEYVRG
Ga0105241_1050011223300009174Corn RhizosphereMAVDLNNETLISQYLLGELSEEQQIEIEDLAFSDKKYLAGIAA
Ga0105241_1130928223300009174Corn RhizosphereMSVDNEKLISQYLLGELPEEQQVQIEDRAFSDKDYLAT
Ga0105241_1134681823300009174Corn RhizosphereMAVDLNNEKLISRYLLGELSEEQQVEIEDRAFADKEYLAS
Ga0105241_1225937123300009174Corn RhizosphereMAADIKNINNEKLIAQYLLGELTEEQQVEIEDRAFSDNDYLASI
Ga0105241_1246067223300009174Corn RhizosphereMAADFNNERLIARYLLGDLPEEQQVASEDRAFADKDYLALVTAVENDLIDEY
Ga0105242_1001225613300009176Miscanthus RhizosphereMATDLNSENLIARYLLGELSEEQQVEIEDRAFADQKYLASITTVEND
Ga0105238_1158014923300009551Corn RhizosphereMSVENETLIARYLLGELPEEQQVQIEDRAFSEKDYLATITAVE
Ga0105249_1250634423300009553Switchgrass RhizosphereMAVDLNNEKLISRYLLGELSEEQQVEIEDRAFADKEYL
Ga0105249_1256753423300009553Switchgrass RhizosphereMAAEFNNEKLIARYLLGDLPEEQQVEIEDRAFADKEYLALVTSVEN
Ga0105249_1312898323300009553Switchgrass RhizosphereMATDLMSEKLINRYLLGELPEEQQVEIEDRAFSDQEFMAIITAAENDLID
Ga0105249_1353532113300009553Switchgrass RhizosphereMSTDINNEKLISRYLLGELPEEQQVEIEDRAFSDKDYLAGITAVENDL
Ga0126304_1084501513300010037Serpentine SoilMAADLDNENIIARYLLGELPEEQQIEIEDRAFAEKEYLANITA
Ga0126308_1025106913300010040Serpentine SoilMSVDNETLIARYLLGELPEEQQVEIEDRAFSDKNYLASI
Ga0126308_1111088723300010040Serpentine SoilMSVDSEKLISRYLLGELPEEQQVEIEDRAFSDKDYLTSITAVENDLI
Ga0126314_1134548223300010042Serpentine SoilMKDDSINEGLIVEYLLGDLPEEKQSEIEDRAFQDEQYLQNILAAESDLIDE
Ga0126310_1035730313300010044Serpentine SoilMAAEPNSERVIARYLLGELPEEQQVEIEDRAFADKDYLASITA
Ga0126311_1111026023300010045Serpentine SoilMAADLYSEQFIPGYLLGKLPEEQQVAIEDLAFRDEEYLANITAIENDLIDEYVRHELSDE
Ga0126384_1053539233300010046Tropical Forest SoilMAADLNNEKLIARYLLGELPEEQQVAIEDRAFTDKDYLALVTAVENDLID
Ga0126306_1187026423300010166Serpentine SoilMARRHAGELRKGFMAANLDNEKLIARYLLGELPEEQQIEVEDRAFADKEYFANIRAVEND
Ga0134125_1166029723300010371Terrestrial SoilMSVENETLIARYLLGELPEEQQVQIEDRAFADKDYLATITAVENDLI
Ga0105239_1075074413300010375Corn RhizosphereMAADPNTEKLIAQYLLGELPEEQQVEIEDRAFQDKEYLDAITAVENDLIDEYVR
Ga0134124_1161407723300010397Terrestrial SoilMAADFNNETLIARYLLGDLPEEQQVEIEDRAFADK
Ga0134127_1120704013300010399Terrestrial SoilMVANPFSEKLIAQYLLGELPEEKHVEIEERAFGDAELMASITAVENELIDEYVRDEMPASDRV
Ga0134127_1120989823300010399Terrestrial SoilMAANAISEKLISQYLLGELSEDQQVEIEDRAFADEEFMAGITAVENDLI
Ga0134127_1247624923300010399Terrestrial SoilMSVDNEKLISRYLLGELPEEQQVEIEDRAFSDKDYL
Ga0134127_1267911013300010399Terrestrial SoilMAADLNNEKLISRYLLGELSEEQQVEIEDRAFADKEYLASIT
Ga0134123_1137208823300010403Terrestrial SoilMATDLNSENLIARYLLGELSEEQQVEIEDRAFADQKYLASIT
Ga0105246_1040263813300011119Miscanthus RhizosphereMATDLNSENLIARYLLGELSEEQQVAIEDRAFADQKYLASITS
Ga0105246_1171325113300011119Miscanthus RhizosphereMAANLNNETLIARYLLGELSEEQQVEIEDRAFSDKDYLASITAVENDLIDEYVRH
Ga0105246_1192740513300011119Miscanthus RhizosphereMAADLNNEKLIARYLLGDLPEEQQVAIEDRAFSDKEYLALVTAVEND
Ga0157371_1155824223300013102Corn RhizosphereMEMAANLNSEKILAQYLLGQLPEEQQVEIEDRAFQDKEYLASITLVENDLIDEYVRGE
Ga0157378_1116149613300013297Miscanthus RhizosphereMATDLNSENLIARYLLGELSEEQQVEIEDRAFADQKYLASITAV
Ga0157378_1137669213300013297Miscanthus RhizosphereMSTDINNEKLISRYLLGELPEEQQVEIEDRAFADKDYLASITTVENDLIDEYVR
Ga0163162_1262466023300013306Switchgrass RhizosphereMSVDNEKLISQYLLGELPEEQQVEIEDRAFSDKDYLATITTVENDLID
Ga0157375_1105194623300013308Miscanthus RhizosphereMSVDNEKLISQYLLGELPEEQQVEIEDRAFCDKAYLATITTVENDLI
Ga0157375_1296998623300013308Miscanthus RhizosphereMEMAANLNSEKILAQYLLGQLPEEQQVEIEDRAFQEK*
Ga0163163_1120864513300014325Switchgrass RhizosphereMATDLNSENLIARYLLGELSEEQQIEIEDRAFADQKYLASITAVENDLIDEY
Ga0157380_1122301513300014326Switchgrass RhizosphereMATDLNSENLIARYLLGELSEEQQVEIEDRAFADQKYLASITAVENDL
Ga0157377_1047605923300014745Miscanthus RhizosphereMSVDNEKLISRYLLGELPEEQQVEIEDRAFSDKDYLATITT
Ga0157379_1265784423300014968Switchgrass RhizosphereMSTDINNEKLISRYLLGELPEEQQVEIEDRAFSDKDYLAGITTVENDL
Ga0190274_1384516423300018476SoilMSTNLNDEKLIAQYLLGELSEEQQVEIEDRAFADKEYFASITAVENDL
Ga0207707_1148428723300025912Corn RhizosphereMAANAISEKLISQYLLGELSEDQQVEIEDRAFADEEFMAGITA
Ga0207662_1018660633300025918Switchgrass RhizosphereMATDLMSEKLINRYLLGELPEEQQVEIEDRAFSDQEFMAIITAAEND
Ga0207681_1079765923300025923Switchgrass RhizosphereMEMAANLNSEKILAQYLLGQLPEEQQVEIEDRAFQDKEYLASITSVENDLIDEYV
Ga0207650_1031674013300025925Switchgrass RhizosphereMASGRSPTEHMSANLNETLIARYLLGELSDDQQVEIEDRAFSDKEYLATITAVENDLIDEYV
Ga0207659_1154373313300025926Miscanthus RhizosphereMSVDNEKLISRYLLGELPEEQQVEIEDRAFSDKDYLATITTVENDL
Ga0207709_1037705013300025935Miscanthus RhizosphereMATELNSEGVIARYLLGELSEEQQVEIEDRAFADQQYLAS
Ga0207709_1093169223300025935Miscanthus RhizosphereMMSVDNEKLIAQYLLGELPEEQQVELEDRAFSDREYLASITAVENDLI
Ga0207670_1190633623300025936Switchgrass RhizosphereMATDLMSEKLINRYLLGELPEEQQVEIEDRAFSDQEFMAIITA
Ga0207704_1196145023300025938Miscanthus RhizosphereMDVVADLNNEKLISRYLLGELSETEQVEIEDRAFADKEYLASVTAVENDLIDEY
Ga0207703_1014609333300026035Switchgrass RhizosphereMSVDNEKLISRYLLGELPEEQQVEIEDRAFSDKDYLA
Ga0207703_1032145613300026035Switchgrass RhizosphereMATDLNNETLIARYLLGELSEEQQVEIEDRAFEDQNYLASITA
Ga0207703_1103306523300026035Switchgrass RhizosphereMSVNNETLIARYLLGELPEEQQVEIEDRAFSDKDYLATITTVENDLIDEY
Ga0207641_1028469033300026088Switchgrass RhizosphereMTIDFNNETLIARYLLGELSEEQQIEIEDRAFADKEYLATITAVENDLIDEYVRHDL
Ga0207676_1014409813300026095Switchgrass RhizosphereMSVNNETLIARYLLGELPEEQQVEIEDRAFSDKDYLA
Ga0207676_1090029023300026095Switchgrass RhizosphereMAADLNNEKLISRYLLGELSEEQQVEIEDRAFTDKDY
Ga0207676_1204478313300026095Switchgrass RhizosphereMAANLNNETLIARYLLGELSEEQQVEIEDRAFSDKDYLASITAVENDLIDEYV
Ga0207674_1131076623300026116Corn RhizosphereMAVELNSENLITQYLLGQLTEEQQIEIEDRAFSDK
Ga0207675_10195874313300026118Switchgrass RhizosphereMAANLNSEKILAQYLLGQLPEEQQVEIEDRAFQDKEYLASITSVENDLIDEY
Ga0209387_104851313300027639Agricultural SoilMAAEPNSEKLIAQYLLGELGEEQQVEIEDRAFSDPEFLANITAVENDLIDEYVRE
Ga0268264_1007084413300028381Switchgrass RhizosphereMATDLNNETLIARYLLGELSEEQQVEIEDRAFEDQN
Ga0268264_1011914413300028381Switchgrass RhizosphereMATDLMSEKLINRYLLGELPEEQQVEIEDRAFSDQEFMA
Ga0307413_1031678913300031824RhizosphereMEMAANLNSEKILAQYLLGQLPEEQQVEIEDRAFQDKQYLASITSVENDLIDEYVRGEM
Ga0307412_1050883413300031911RhizosphereMATDLNNEKLISRYLLGELSEEQQVEIEDRAFVDKEYLASITAVENDLIDEY
Ga0308173_1091570323300032074SoilMAADIKNINDEKLIAQYLLGELPEEQQVEIEDRAFSDKDYLA


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