Metagenome Family F101832

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101832
Family Type	Metagenome
Number of Sequences	102
Average Sequence Length	64 residues
Representative Sequence	EPHPGMTVRVKEGHWKSKFSGMRGTVEHRWGHPHHPALDVRLEDGRLQLFWFHELDKA
Number of Associated Samples	41
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	33.33 %
% of genes near scaffold ends (potentially truncated)	1.96 %
% of genes from short scaffolds (< 2000 bps)	11.76 %
Associated GOLD sequencing projects	41
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.77

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (80.392 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil (62.745 % of family members)
Environment Ontology (ENVO)	Unclassified (62.745 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (82.353 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98. 1FACENCTE_7493850 2JGI1027J11758_130864231 3JGI11615J12901_123928892 4F14TB_1055275882 5Ga0082029_13038442 6Ga0079216_104042902 7Ga0079216_110495192 8Ga0105679_100815912 9Ga0105679_102375481 10Ga0105679_102816941 11Ga0105679_104186583 12Ga0105679_108484403 13Ga0126307_1000768110 14Ga0126307_100557442 15Ga0126307_101204094 16Ga0126307_101604071 17Ga0126307_101905123 18Ga0126307_102198344 19Ga0126307_105558332 20Ga0126307_106837702 21Ga0126307_114597292 22Ga0126313_100085849 23Ga0126313_100314597 24Ga0126313_100520804 25Ga0126313_101542632 26Ga0126313_102493141 27Ga0126305_100133465 28Ga0126305_100987163 29Ga0126305_103152342 30Ga0126305_105542672 31Ga0126305_107295472 32Ga0126305_107844381 33Ga0126305_109276221 34Ga0126304_100079178 35Ga0126304_101994532 36Ga0126304_103939971 37Ga0126304_104793362 38Ga0126315_101493571 39Ga0126315_101563002 40Ga0126315_101612173 41Ga0126315_106460552 42Ga0126315_109221062 43Ga0126309_101639111 44Ga0126309_107469622 45Ga0126309_108311831 46Ga0126309_108963272 47Ga0126309_112139082 48Ga0126309_113170651 49Ga0126308_100208036 50Ga0126308_100742022 51Ga0126308_101663112 52Ga0126308_104190652 53Ga0126308_106443111 54Ga0126308_109829082 55Ga0126308_109904201 56Ga0126312_101153371 57Ga0126312_106350621 58Ga0126312_114807412 59Ga0126314_100192372 60Ga0126314_100193615 61Ga0126314_100206844 62Ga0126314_107365551 63Ga0126310_100043429 64Ga0126310_100241453 65Ga0126310_100420462 66Ga0126310_108248841 67Ga0126310_109839331 68Ga0126310_113103782 69Ga0126311_100558634 70Ga0126311_104766121 71Ga0126311_108512842 72Ga0126311_113149661 73Ga0126311_116854611 74Ga0126311_117582641 75Ga0126306_101609092 76Ga0126306_101635112 77Ga0138513_1000617221 78Ga0190270_107921282 79Ga0190270_112205462 80Ga0193596_10038213 81Ga0193612_10281002 82Ga0193606_10011487 83Ga0193595_10575942 84Ga0193607_11658291 85Ga0193611_10511502 86Ga0193614_10733582 87Ga0193614_11699322 88Ga0193605_10261301 89Ga0193604_10298542 90Ga0193602_10162032 91Ga0193602_10574911 92Ga0193597_11385181 93Ga0190264_113596811 94Ga0190264_122913552 95Ga0268240_100422142 96Ga0268241_100514311 97Ga0307410_116007931 98Ga0307406_106522511 99Ga0307409_1003640404 100Ga0307416_1010272582 101Ga0307414_110789101 102Ga0334936_012529_1131_1292
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98. 1FACENCTE_7493850 2JGI1027J11758_130864231 3JGI11615J12901_123928892 4F14TB_1055275882 5Ga0079216_104042902 6Ga0079216_110495192 7Ga0105679_102375481 8Ga0105679_102816941 9Ga0126307_1000768110 10Ga0126307_100557442 11Ga0126307_101204094 12Ga0126307_101604071 13Ga0126307_101905123 14Ga0126307_102198344 15Ga0126307_105558332 16Ga0126307_106837702 17Ga0126313_100520804 18Ga0126313_101542632 19Ga0126305_100133465 20Ga0126305_105542672 21Ga0126305_107844381 22Ga0126304_100079178 23Ga0126315_101612173 24Ga0126308_106443111 25Ga0126308_109829082 26Ga0126311_104766121 27Ga0126311_113149661 28Ga0193605_10261301 29Ga0190264_113596811 30Ga0268241_100514311
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58 1Ga0193607_11658291 2FACENCTE_7493850 3JGI11615J12901_123928892 4F14TB_1055275882 5Ga0079216_104042902 6Ga0079216_110495192 7Ga0105679_100815912 8Ga0105679_102375481 9Ga0105679_102816941 10Ga0105679_104186583 11Ga0126307_100557442 12Ga0126307_101204094 13Ga0126307_102198344 14Ga0126313_100314597 15Ga0126313_102493141 16Ga0126305_100133465 17Ga0126305_105542672 18Ga0126305_107844381 19Ga0126315_101493571 20Ga0126315_109221062 21Ga0126309_108963272 22Ga0126308_100742022 23Ga0126308_101663112 24Ga0126308_104190652 25Ga0126308_106443111 26Ga0126308_109829082 27Ga0126312_106350621 28Ga0126314_100192372 29Ga0126314_100193615 30Ga0126314_100206844 31Ga0126310_100241453 32Ga0126310_113103782 33Ga0126311_104766121 34Ga0126311_108512842 35Ga0126306_101609092 36Ga0138513_1000617221 37Ga0190270_112205462 38Ga0193614_10733582 39Ga0190264_113596811 40Ga0268240_100422142 41Ga0268241_100514311 42Ga0307416_1010272582
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 6.98% β-sheet: 30.23% Coil/Unstructured: 62.79%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.77
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.77
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
b.34.4.4: Nitrile hydratase beta chain	d3a8gb_	3a8g	0.83823
b.34.4.4: Nitrile hydratase beta chain	d3hhtb_	3hht	0.82932
b.34.20.1: YorP-like	d2heqa1	2heq	0.7944
b.34.5.4: N-utilization substance G protein NusG, C-terminal domain	d1nppa2	1npp	0.76794
b.34.17.1: YccV-like	d5ycqa_	5ycq	0.7561

Showing 1 to 5 of 5 entries

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF14659	Phage_int_SAM_3	3.92
PF00589	Phage_integrase	3.92
PF00196	GerE	1.96
PF06475	Glycolipid_bind	1.96
PF12770	CHAT	1.96
PF02769	AIRS_C	1.96
PF00072	Response_reg	0.98
PF03796	DnaB_C	0.98
PF09107	SelB-wing_3	0.98
PF03330	DPBB_1	0.98

Showing 1 to 10 of 16 entries

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COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG3554	Uncharacterized conserved protein	Function unknown [S]	1.96
COG0305	Replicative DNA helicase	Replication, recombination and repair [L]	0.98
COG1066	DNA repair protein RadA/Sms, contains AAA+ ATPase domain	Replication, recombination and repair [L]	0.98
COG1853	FMN reductase RutF, DIM6/NTAB family	Energy production and conversion [C]	0.98
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.98

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	19.61 %
Unclassified	root	N/A	80.39 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	18.63 %
Unclassified	root	N/A	80.39 %
Viruses	superkingdom	All Organisms → Viruses	0.98 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	18.63 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.98 %
Unclassified	root	N/A	80.39 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.98 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	14.71 %
Unclassified	root	N/A	80.39 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	14.71 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.98 %
Unclassified	root	N/A	80.39 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.98 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.98 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	12.75 %
Unclassified	root	N/A	80.39 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.98 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.98 %
Rubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales	12.75 %
Unclassified	root	N/A	80.39 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.98 %
Propionibacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae	0.98 %
Rubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	12.75 %
Unclassified	root	N/A	80.39 %

Name	Rank	Taxonomy	Distribution
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples	9.80 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.98 %
Rubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter	1.96 %
Unclassified	root	N/A	80.39 %
unclassified Propionibacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → unclassified Propionibacteriaceae	0.98 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.98 %
Propionibacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → unclassified Propionibacteriaceae → Propionibacteriaceae bacterium	0.98 %
Rubrobacter radiotolerans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans	1.96 %
Unclassified	root	N/A	80.39 %
uncultured Rubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	9.80 %

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300007790\|Ga0105679_10848440	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	1019	Open in IMG/M
3300009789\|Ga0126307_10007681	All Organisms → cellular organisms → Bacteria	7703	Open in IMG/M
3300009789\|Ga0126307_10055744	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	3093	Open in IMG/M
3300009789\|Ga0126307_10120409	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → unclassified Propionibacteriaceae → Propionibacteriaceae bacterium	2089	Open in IMG/M
3300009789\|Ga0126307_10219834	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	1525	Open in IMG/M
3300009789\|Ga0126307_10555833	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	926	Open in IMG/M
3300009789\|Ga0126307_10683770	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	828	Open in IMG/M
3300009840\|Ga0126313_10008584	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6318	Open in IMG/M
3300009840\|Ga0126313_10154263	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	1737	Open in IMG/M
3300010036\|Ga0126305_10013346	All Organisms → cellular organisms → Bacteria	4181	Open in IMG/M

Showing 1 to 10 of 21 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.10%
Host-Associated	Host-Associated	4.90%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	4.90%
Terrestrial	Environmental → Terrestrial	95.10%

Habitat	Taxonomy	Distribution
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.90%
Soil	Environmental → Terrestrial → Soil	94.12%

Habitat	Taxonomy	Distribution
Loam	Environmental → Terrestrial → Soil → Loam	0.98%
Sand	Environmental → Terrestrial → Soil → Sand	18.63%
Soil Crust	Environmental → Terrestrial → Soil → Soil Crust	0.98%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	73.53%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.90%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.96%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	18.63%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.96%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.98%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	69.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.90%
Unclassified	Environmental → Terrestrial → Soil → Soil Crust → Unclassified	0.98%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.96%
Biocrust	Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust	0.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	4.90%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	62.75%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	13.73%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	4.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.98%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.98%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.98%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2035918005	Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2+	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300007790	Microbial communities of desert soil contaminated with blood from dead anthrax infected zebra in Etosha National Park, Namibia. Combined Assembly of 14 sequencing projects	Environmental	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M

Showing 1 to 10 of 41 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FACENCTE_7493850	2035918005	Soil	EPHPGMTVRVKEGHWKSKYDGMRGTVERRWGHPDHPALDVRLEDGQLELFWFHELDKA
JGI1027J11758_130864231	3300000789	Soil	MEDGRSWKVSLTAILEIGEDLLQSQEARTGITVRVQEGHWKSKFGGMVGVVEHKWGHPDYPALDVRLEDGRLELFWFHELDEASE
JGI11615J12901_123928892	3300000953	Soil	MQSYEPQPAMLVQVKEGYRRWEFGGMVGTVEHRWGNPEYPALDVRLDDGRLVLFWFHELDEASEN*
F14TB_1055275882	3300001431	Soil	VRPQEPQLGMKVQVNDGLWRSEFAGMLGTVEHRWGNPDYPALDVRLEDGRLALFWFHELDEASEN*
Ga0082029_13038442	3300006169	Termite Nest	VRAYEPRLGMKVRIQKGIWRSEFAGMLGTVEHRWGNPDHPALDVRLEDGRLVLFWFHELDEASGN*
Ga0079216_104042902	3300006918	Agricultural Soil	MRSHELHAGVVVRVKEGHWRSKFDGMMGVVEHKWVHPAYPALDVRLEDGRLELFWFHELE
Ga0079216_110495192	3300006918	Agricultural Soil	VQSHEPQLGMLVRVREGHWRSEYGGMFGTVEHRWGHPDHPALDVRLVDGRLELFWFHEVDEAREAV*
Ga0105679_100815912	3300007790	Soil	MLVRVKEGHRRSGCGGMVGTVEHRWGHPDHPALDVRLADGRLELFWFHELDEAREAV*
Ga0105679_102375481	3300007790	Soil	MLVRVREGHWRPEYGGMVGTVEEMWGRAEHPALDVRLENGRLELFWFHEVDEARGGRV*
Ga0105679_102816941	3300007790	Soil	MGIKVRVKERHWKSKFSGMRGTVKHRWGHPDHPALDVLLEDGRLELFW
Ga0105679_104186583	3300007790	Soil	MQSHEPHLGMLVRVREGHRKSRFGGMVGVVENRWGSPDYPALDVRLENGRLELFWFHELDMAQEAV*
Ga0105679_108484403	3300007790	Soil	MTVRVKEGHWKSKYDGMRGAVERRWGHPARPALDVRLEDGRLQLFWFHELDKA*
Ga0126307_1000768110	3300009789	Serpentine Soil	MLVRVRAGHWKPKFGGMMGVVEHRWGHPDYPALDVRLDDGQLELFWFHELDEAS*
Ga0126307_100557442	3300009789	Serpentine Soil	MQAHEPHPGVVVRVSEEHWKSEFGGMVGVVQGVWGHPDYPAVDVRLEDGSLELFWFHELDDAEEVIGHGSAVVK*
Ga0126307_101204094	3300009789	Serpentine Soil	VQEGHWKSKFDGMSGTVEHSWGHPDHPALDVRLEDGRLELFWFHELDKVS*
Ga0126307_101604071	3300009789	Serpentine Soil	VLLASNLEIGQNLMQSHEAHTGITVRVTEGHWKSRFSGMRGTVEHKWGHPDHPALDVRLEDG
Ga0126307_101905123	3300009789	Serpentine Soil	VLLASILEIGVNLLQSHEARTGITIRVNEKHWKSRYRGMLGTVEHRWGHPDHPALDVRLEDGRLELFWFHELDEV*
Ga0126307_102198344	3300009789	Serpentine Soil	MGITVRVKEGHLKSKFGGMRGTIEHKWGAPEYPALDVRLEDGQLQLFWFHELDEVY*
Ga0126307_105558332	3300009789	Serpentine Soil	MGITVRVKEGHWKSRFSGMRGTVEHRWGHPQHPALDVRLEDGRSELFWFHELEKVQEEALTA*
Ga0126307_106837702	3300009789	Serpentine Soil	MTVRVKEGHWKSGFGGQVGVVQGVWGHPDYPALDVRLEDRRLELFWFHELDEV*
Ga0126307_114597292	3300009789	Serpentine Soil	MTVRVKEGHWKSDFGGMEGVVQGVWGHPDYPALDVRLEDRRLELFWFHELDEVQEGARTA
Ga0126313_100085849	3300009840	Serpentine Soil	MTVRVKEEHWKSRFSGMRGTVENRWGHHDHPALDVRLEDGRLELFWFHELDKV*
Ga0126313_100314597	3300009840	Serpentine Soil	MEAHEPRLGMLVRVRAGHWKPKFGGMMGVVEHRWGHPDYPALDVRLDDGQLELFWFHELDEAS*
Ga0126313_100520804	3300009840	Serpentine Soil	MKVRVKGKPWRSEFDGMVGTVVHRWGSPDHPALDVRLQDGRLVLFWFHELERQDN*
Ga0126313_101542632	3300009840	Serpentine Soil	MPVRVKERLWRSDFGGMLGTVERRWGHTDYPALDVRLDDGRLELFWFHELDEVS*
Ga0126313_102493141	3300009840	Serpentine Soil	VHLASILEIGVNLLQSHEARTGITIRVNEKHWKSRYRGMLGTVEHRWGHPDHPALDVRLEDGRLELFWFHELDEV*
Ga0126305_100133465	3300010036	Serpentine Soil	MRLRVKEGHRRSGFCGMLGTVEGTWGHPEYPALDVRLADGRSELFWFYELDKVPEEARTA
Ga0126305_100987163	3300010036	Serpentine Soil	VLLASNLEIGQNLMQSHEAHTGITVRVTEGHWKSRFSGMRGTVEHKWGHPDHPALDVRLEDGRLELFWFHELDRV*
Ga0126305_103152342	3300010036	Serpentine Soil	MQSQEARTGITVRVQEGHWKSKFDGMSGTVEHSWGHPDHPALDVRLEDGRLELFWFHELDKVS*
Ga0126305_105542672	3300010036	Serpentine Soil	MPVRVKERLWRSDFGGMLGTVERRWGNAEHLALDVRLEDGSLELFWFYELDKASELTSVY
Ga0126305_107295472	3300010036	Serpentine Soil	EGHWKSRFSGMRGTVEHSWGHPEHPALDVRLEDGRLELFWFHELDEVY*
Ga0126305_107844381	3300010036	Serpentine Soil	VLLASILEIGENLLQSHEARAGITLRVKEGHWKSRFSGMRGIVEHRWRWGHPEHPALDVRLEDGRLELFWFHELEKADQALGA*
Ga0126305_109276221	3300010036	Serpentine Soil	MGITVRVKEGHLKSKFGGMRGTIEHKWGAPEYPALDVRLEDGQLQLFWFHEL
Ga0126304_100079178	3300010037	Serpentine Soil	MQSHEAHTGITVRVTEGHWKSRFSGMRGTVEHKWGHPDHPALDVRLEDGRLELFWFHELDRV*
Ga0126304_101994532	3300010037	Serpentine Soil	VQEGHWKSKFDGMSGTVEHSWGHPDHPALDVRLENGRLELFWFHELDKVQGEAGTA*
Ga0126304_103939971	3300010037	Serpentine Soil	VLLASILEIGENLLQSHEARTGLTVRVKEGHWKSRFSGMRGTVEHSWGHPEHPALDVRLEDGRLELFWFHELDRV*
Ga0126304_104793362	3300010037	Serpentine Soil	MEDGRSWKVSLTAILEIGEDLLQSQEARTGITVRVQEGHWKSKFGGMRGTVEHKWGHPDYPALDVRLEDGRLELFWFHELDEASEN*
Ga0126315_101493571	3300010038	Serpentine Soil	MQSYEPRLGMKVRVKGKPWRSEFDGMVGTVVHRWGSPDHPALDVRLQDGRLVLFWFHELERQDN*
Ga0126315_101563002	3300010038	Serpentine Soil	VLLASNLEIGQNLMQSHEAHTGITVRVTEGHWKSRFSGMRGTVEHKWGHPDHPALDVRLEDGRLELFWFHELDKV*
Ga0126315_101612173	3300010038	Serpentine Soil	MKDGRGWKVLLASISEIEENLLQAHEVRTGITVRVKQQHWKSKFGGMRGTVEHKWGHPEHPALDVRFDDGRLELFWFHELDEVS*
Ga0126315_106460552	3300010038	Serpentine Soil	LQSQEARTGITVRVHEGHWKSKFGGMRGTVEHRWGHPDYPALDVRLDDGRLELFWFHELDEASEN*
Ga0126315_109221062	3300010038	Serpentine Soil	MLVRVKEEQWKKEFGGMLGTVEHRWGSPDYPALDVRLEDGRLELFWFHELDEASEN*
Ga0126309_101639111	3300010039	Serpentine Soil	VLLASILEIGEYLLQSHEARTGITIRVNEKHWKSRYRGMRGTVEHKWGHPDHPALDVRLEDGRLELFWFHELEKV*
Ga0126309_107469622	3300010039	Serpentine Soil	MTVRVKEEHWKSRFSGMRGTVENRWGHPDHPALDVRLEDGRLELFWFHELDKV*
Ga0126309_108311831	3300010039	Serpentine Soil	MRVRVKEGHRRSGFCGMLGTVEGTWGHPDYPALDVRLADGRSELFWFYELDKVPEEARTA
Ga0126309_108963272	3300010039	Serpentine Soil	VRVKQAHWKSKYSGMRGTVEHRWGHPDHPALDVRLEDGRLELFWFYELDKA*
Ga0126309_112139082	3300010039	Serpentine Soil	MTVRVKEGHWKSGFGGMVGVVQGVWGHPDYPALDVRLEDRRLELFWFHELDEVQEKARTA
Ga0126309_113170651	3300010039	Serpentine Soil	MQAHEPHPGVAVRVSEEHWKLEFGGMVGVVQGVWGHPDYPAVDVRLEDGSSELFWFHELDDAEEVIGHGRAVVN*
Ga0126308_100208036	3300010040	Serpentine Soil	MEAHEPRLGMLVRVRAGHWKPKFGGMMGVVEHRWGHPDYPALDVRLDDGRLELFWFHELDEAS*
Ga0126308_100742022	3300010040	Serpentine Soil	MQSHEAHPGMLVQVKEDLWRSEFGGMVGTVEHRWGSPDCPTLDVRLEDGRMMLFWFHELDEASEN*
Ga0126308_101663112	3300010040	Serpentine Soil	VLLASNLEIGQNLMQSHEAHTGITVRVTEGHWKSRFSGMRGTVEHKVGHPDHPALDVRLEDGRLELFWFHELDEVY*
Ga0126308_104190652	3300010040	Serpentine Soil	MTVRVKEGHWKSDFGGMVGVVQGVWGHPDYPALDVRLEDRRLELFWFHELDEVQEGARTA
Ga0126308_106443111	3300010040	Serpentine Soil	CPGMRVRVKEGHRRSGFCGMLGTVEGTWGHPEYPALDVRLEDGSLELFWFHELDKA*
Ga0126308_109829082	3300010040	Serpentine Soil	MQAHEPHTGMLVQVNNRPWKSELRGLVGTVEHRWGAPEYPALDVRLEDGRMMLFWFHELNEASEN*
Ga0126308_109904201	3300010040	Serpentine Soil	MRVRVKEGHRRSGFCGMLGTVEGTWGHPEYPALDVRLADGRSELFWFYELDKVPEEARTA
Ga0126312_101153371	3300010041	Serpentine Soil	VLLASNLEIGVNLLQSQEAHTGITVRVTEGHWKSRFSGMRGTVEHKWGHPDHPALDVRLEDGRLELFWFHELDRV*
Ga0126312_106350621	3300010041	Serpentine Soil	VPLASILEIGENLLQSHEARKGITVRVKEGHWKSKFGGMRGTVEQRWGAPEYPALDVRLENGRLELFWFHELDEVY*
Ga0126312_114807412	3300010041	Serpentine Soil	LLASNLEIGVNLLQSQEAHTGITVRVTEGHWKSRFSGMRGTVEHRWGHPDHPALDVRLEDGRLQLFWFHELEKV*
Ga0126314_100192372	3300010042	Serpentine Soil	LESRDVRTGITVRVKEGHWKSRFSGMRGTVEHRWGHPDHPALDVRLEDGRLELFWFHELDKV*
Ga0126314_100193615	3300010042	Serpentine Soil	VAVRVKDGLWRSEFGGMLGTVEHKWGHPDHPALDVRLEDGRSELFWFHELDKVQEKARTA
Ga0126314_100206844	3300010042	Serpentine Soil	LEIGEDLLQSQEARTGITVRVQEGHWKSKFGGMRGTVEHRWGHPDYPALDVRLDDGRLELFWFHELDKVS*
Ga0126314_107365551	3300010042	Serpentine Soil	MQAHEPHPGVVVRVSEEHWKSEFGGMVGVVQGVWGHPDYPAVDVRLEDGSLELFWFHELDDAEEVIGHGRAVVN*
Ga0126310_100043429	3300010044	Serpentine Soil	VQEGHWKSKFGGMRGTVEQRWGHPDHPALDVRLEDGRLELFWFHELDKVS*
Ga0126310_100241453	3300010044	Serpentine Soil	LEIGENLLQSHEARTGITVRVKEGHWKSRLRGMRGTIEHSWGHPEHPALDVRLEDGRLELFWFHELDEVY*
Ga0126310_100420462	3300010044	Serpentine Soil	MTVRVKEGHWKSDFGGMVGVVQGVWGHPDYPALDVRLEDRRLELFWFHELDEV*
Ga0126310_108248841	3300010044	Serpentine Soil	MTVRVKEGHWKSGFGGMVGVVQGVWGHPDYPALDVRLEDRRLELFWFHELDEV*
Ga0126310_109839331	3300010044	Serpentine Soil	VLLASILEIGENLLQSHKARRGITVRVKEGHWKSRFSGMRGTVEHRWRWGHPEHPALDVRLEDGRLELFWFHELEK
Ga0126310_113103782	3300010044	Serpentine Soil	MQSHEPHPGMLVQVNDGLWRSEFAGMVGTVEHRWGNPDYPALDVRLEDGRMMLFWFHELDEASEN*
Ga0126311_100558634	3300010045	Serpentine Soil	TVRVQEGHWKSKFGGMRGTVEHRWGHPDYPALDVRLEDGRLELFWFHELDKVS*
Ga0126311_104766121	3300010045	Serpentine Soil	LEIGEDLLQSQEARTGITVRVQEGHWKSKFGGMRGTVEHRWGHPDHPALDVRLENGRLELFWFHELEEIEGVT*
Ga0126311_108512842	3300010045	Serpentine Soil	LQSQEARTGITVRVQEGHWKSKFGGMVGVVEHKWGHPDYPALDVRLEDGRLELFWFHELDEASEN*
Ga0126311_113149661	3300010045	Serpentine Soil	MEREVGGSWRVHLASILEIGENLMQSHEARAGITIRVNEKHWKSRFGGMLGTVEHRWRWGHPDYPALDVRLEDGRSELFWFHEL
Ga0126311_116854611	3300010045	Serpentine Soil	VLLASILEIGENLLQSHEARRGITVRVKEGHWKSRFSGMRGTVEHRWRWGHPEHPALDVRLEDGRLELFWFHELEKADQALGA*
Ga0126311_117582641	3300010045	Serpentine Soil	MQSHEPHPGMLVQVNDGLWRSEFAGMVGTVEHRWGSPDYPALDVRLEDGRMMLFWFHELDEASEN*
Ga0126306_101609092	3300010166	Serpentine Soil	MPVRVKERLWRSDFGGMLGTVERRWGHTDYPALDVRLQDGRLVLFWFHELDEAS*
Ga0126306_101635112	3300010166	Serpentine Soil	VQEGHWKSKFDGMSGTVEHSWGHPDHPALDVRLEDGRLELFWFHELDKVQGEAGTA*
Ga0138513_1000617221	3300011000	Soil	MKVLVNDGLWRSEFAGMLGIIEHRWGNTDYPALDVRLEDGRMMLFWFHELNEASEN*
Ga0190270_107921282	3300018469	Soil	LQSQEARTGITVRVQEGHWKSKFGGMVDVVEHKWGHPDYPALDVRLEDGRLELFWFHELNEASEN
Ga0190270_112205462	3300018469	Soil	LKIGENLLQSYEPQPGMLVQVKEGLWRSEFGGMLGTVEHRWGAPEHPALDVRLDDGRLELFWFHELDEAS
Ga0193596_10038213	3300018719	Soil	LQSHEPHPGMTVRVKAGHWKFKFDGMRGTVEHRWGHPHHPALDVRLEDGRLQLFWFHELEKA
Ga0193612_10281002	3300018757	Soil	VKAGHWKSKFDGMRGTVEHRWGHPDHPALDVRLEDGRLQLFWFHELDKA
Ga0193606_10011487	3300018839	Soil	VNRLQSHEPHPGMTVRVKAGHWKFKFDGMRGTVEHRWGHPHHPALDVRLEDGRLQLFWFHELEKA
Ga0193595_10575942	3300018890	Soil	LQSHEPHPGMTVRVKAGHWKSKFDGMRGTVEHRWGHPHHPALDVRLEDGRLQLFWFHELEKA
Ga0193607_11658291	3300018892	Soil	EPHPGMTVRVKEGHWKSKFSGMRGTVEHRWGHPHHPALDVRLEDGRLQLFWFHELDKA
Ga0193611_10511502	3300018917	Soil	VNLLESDEPHPGMTVRVKEGHWKSKFSGMRGTVEHRWGHPHHPALDVRLEDGRLQLFWFHELDKA
Ga0193614_10733582	3300018933	Soil	LESHEARTGIMVRVKDGHWKARFSGMRGTVEHRWGHPEHPALDVRLEDGRLQLFWFHELERVQEEARTV
Ga0193614_11699322	3300018933	Soil	LESDEPHPGMTVRVKEGHWKSKFSGMRGTVEHRWGHPHHPALDVRLEGGRLQLFWFHELDKA
Ga0193605_10261301	3300018984	Soil	LESDEPHPGMTVRVKEGHWKSKFSGMRGTVEHRWGHPHHPALDVRLEGGRLQLFWFH
Ga0193604_10298542	3300019132	Soil	LQSHEPHPGMTVRVKAGHWKSKFDGMRGTVEHRWGHPHHPALDVRLEDGRLQLFWFHELDKA
Ga0193602_10162032	3300019135	Soil	VKAGHWKSKFDGMRGTVEHRWGHPDHPALDVRLEDGRLQLFWFHELEKA
Ga0193602_10574911	3300019135	Soil	LQSHEPHPGMTVRVKAGHWKFKFDGMRGTVEHRWGHPHHPALDVRLEDGRLQLFWF
Ga0193597_11385181	3300019142	Soil	LQSHEPHPGMTVRVKAGHWKSKFDGMRGTVEHRWGHPDHPALDVRLEDGRLQLFWFHELEKA
Ga0190264_113596811	3300019377	Soil	LPRPDDCGVNRLQSHEPYPGMTVRVKVGHWKSRFDGMRGTVEHRWGHPDHPALDVRLEDGRLELFWFHELDKA
Ga0190264_122913552	3300019377	Soil	PGMTVRVKQAHWKSKYSGMRGTVEHRWGHPDHPALDVRLEDGQLELFWFHELEKA
Ga0268240_100422142	3300030496	Soil	VRAYESRLGMKVRIQKGIWRSEFAGMLGTVEHRWGNPDHPALDVRLEDGRLVLFWFHELDEASEN
Ga0268241_100514311	3300030511	Soil	MQSHEPHPGMKVRVQEGLRRSEFGGMLGTVEHMWGSPDYPAFDVRLDNGLLVLFWFHELDEAG
Ga0307410_116007931	3300031852	Rhizosphere	MEAHEPRLGMLVRVRAGHWKPKFGGMMGVVEHRWGHPDYPALDVRLDDGQLELFWFHELDEVS
Ga0307406_106522511	3300031901	Rhizosphere	GMLVRVRAGHWKTKFGGMMGVVEHRWGHPDYPALDVRLDDGQLELFWFHELDEAS
Ga0307409_1003640404	3300031995	Rhizosphere	MEAHEPRLGMLVRVRAGHWKPKFGGMMGVVEHRWGHPDYPALDVRLDDGQLELFWFHELDEAS
Ga0307416_1010272582	3300032002	Rhizosphere	MKDGRGWKVLLASISEIEENLLQAHEVRTGITVRVKQQHWKSKFGGMRGTVEHKWGHPEHPTLDVRFDDGRLELFWFHELDEVS
Ga0307414_110789101	3300032004	Rhizosphere	MEAHEPRLGMLVRVRAGHWKPKFGGMMGVVEHRWGHPDYPALDVRLDDGRLELFWFHELDEAS
Ga0334936_012529_1131_1292	3300034007	Biocrust	MTVRVKEGHWKSEYDGMRGTVEHRWGHPQHPALDVRLEDGRLQLFWFHELDKA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F101832

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences