Basic Information | |
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Family ID | F101829 |
Family Type | Metagenome |
Number of Sequences | 102 |
Average Sequence Length | 60 residues |
Representative Sequence | MKRPAMSTNMQFNLPLLDVPAAALPANKQRELDLALVELLLSAARESAGQPAQGDGNEPEADE |
Number of Associated Samples | 91 |
Number of Associated Scaffolds | 102 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 60.78 % |
% of genes near scaffold ends (potentially truncated) | 31.37 % |
% of genes from short scaffolds (< 2000 bps) | 86.27 % |
Associated GOLD sequencing projects | 80 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.41 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (83.333 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (8.823 % of family members) |
Environment Ontology (ENVO) | Unclassified (53.922 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (50.000 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Fibrous | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 26.37% β-sheet: 0.00% Coil/Unstructured: 73.63% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.41 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Peatland Groundwater Sediment Watersheds Soil Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Surface Soil Termite Nest Soil Agricultural Soil Soil Soil Soil Hardwood Forest Soil Soil Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Corn Rhizosphere Fen Bog Arabidopsis Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Plant Roots Populus Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Corn Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
INPhiseqgaiiFebDRAFT_1011007212 | 3300000364 | Soil | PPMPTNMQFNLPLLDAPAAALPGNKKRELDLALVELLINAARESAVLPTQGDGNEPEADE |
Ga0062592_1023605001 | 3300004480 | Soil | MKRPAMSTNMQFNLPLLDVPAAALPANKQRELDPALVELLLSAARESAGQPAQGDGNEPEADE* |
Ga0062591_1013618731 | 3300004643 | Soil | MKRPAMSTNMQFNLPLLDVPAAALPANKQRELDLALVELLLSAARESAGQPAQGDGNEPEADE* |
Ga0070676_110318181 | 3300005328 | Miscanthus Rhizosphere | MKRPAMPTNIQFNLPLLDVPATALPANKQRELDLALVEMLLNAARESAELPTQGDGNEPEADE* |
Ga0070683_1000925813 | 3300005329 | Corn Rhizosphere | MKRPPTRTNMQFNLPLPDAPAAALPGNKQRELDLALVELLLSAARENANGLAQGGGSEPKADD* |
Ga0070666_113963302 | 3300005335 | Switchgrass Rhizosphere | MKRSAMPTNMQFNLPFLDVPAAALPVNKRRELDLALVELLLSAALESVGLPAQGEGNEPEAHE* |
Ga0070708_1001884852 | 3300005445 | Corn, Switchgrass And Miscanthus Rhizosphere | MKRPAIHTNMQFNLPLPDAPAAALPDNKQRELDLALVELLISAARGSAGRPAQGGGNEPEVDN* |
Ga0070739_100292283 | 3300005532 | Surface Soil | MKRPAVPTNMQFKLPLPDAPAAALPSDKQRELALALTELLLSAALGSNSRPGRGGRR* |
Ga0070732_100203163 | 3300005542 | Surface Soil | MKRPATPTNLQFNLPLLDVPAATLPTNKQRELELALMELLLNAARERADLPAQGDGHEPEANQ* |
Ga0068859_1010786062 | 3300005617 | Switchgrass Rhizosphere | RREWMKRPAMSTNMQFNLPLLDVPAAALPANKQRELDLALVELLLSAARESAGQPAQGDGNEPEADE* |
Ga0070764_107269041 | 3300005712 | Soil | MKRPVMPTNIQFNLPLLDEPATALPANKQRELDLALVELLLDAARESAGLPEQGDGNEPEADE* |
Ga0068863_1002550461 | 3300005841 | Switchgrass Rhizosphere | MKRPATPTNMQFNLPLLDVPAAALPANKQRELELALVELLLNAARECAGLPAQGDGNEPETND* |
Ga0068862_1017617151 | 3300005844 | Switchgrass Rhizosphere | PQRREWMKRPAMSTNMQFNLPLLDVPAAALPANKQRELDLALVELLLSAARESAGQPAQGDGNEPEADE* |
Ga0070717_113140993 | 3300006028 | Corn, Switchgrass And Miscanthus Rhizosphere | MQFNLPLLDVPAAALPANKQRELELALMELLINAACECAGLPAQGDGNEPEADE* |
Ga0075017_1007897351 | 3300006059 | Watersheds | MKRPAMPPNMQFNLPLLDVPAAALPANKQRELDLALVELLLSAARESTGLPAQGDGNEPEADE* |
Ga0075030_1000231222 | 3300006162 | Watersheds | MKRPAMPPNMQFNLPLLDVPAAALPANKQRELDLALVELLLSAARESASLPAQGDGNEPEADE* |
Ga0082029_14042872 | 3300006169 | Termite Nest | VKRPAMLTNLQFKLPLPDAPAAALPSDKERELALALVELLLNAARGNHSHPKRGGGDEPEADE* |
Ga0097621_1021975671 | 3300006237 | Miscanthus Rhizosphere | MKRPAMSTNMQFNLPLLDVPAAALPANKQRELDLALVELLLSAARESAGQPAQGDGNEPEAHE* |
Ga0068871_1008194641 | 3300006358 | Miscanthus Rhizosphere | MKRSAMPTNMQFNLPLLDVPAAALPANKQRELDLALVELLLSAARESAGQPAQGDGNEPEAHE* |
Ga0079222_106944482 | 3300006755 | Agricultural Soil | MKRPAIHTNMQFNLPLPDAPAAALPGNKQRELDLALVELLLSAARESVGRPAQGGGNEPEVDD* |
Ga0075434_1020372581 | 3300006871 | Populus Rhizosphere | NLPLLDVPAAALPANKQRELELALMELLLNAARECAGLPAQGDGNEPETND* |
Ga0075424_1012594172 | 3300006904 | Populus Rhizosphere | MKRPAMSTNMQFNLPLLDVPAAALPVNKRRELDLALVELLLSAAREGTGLPAQGEGNEPEADE* |
Ga0105240_100037234 | 3300009093 | Corn Rhizosphere | MQFNLPLPDAPAAALPGNKQRELDLALVELLLSAARENANGLAQGGGSEPKADD* |
Ga0105240_100858683 | 3300009093 | Corn Rhizosphere | MKRPAIPTNLQFNLPLPDAPAAALPGNKQRELDLALVELLISAARESAGRPAQGGGNEPEVDN* |
Ga0111539_100402365 | 3300009094 | Populus Rhizosphere | MPTNIQFNLPLLDVPATALPANKQRELDLALVEMLLNAARESAELPTQGDGNEPEADE* |
Ga0099792_111209151 | 3300009143 | Vadose Zone Soil | DVPAAELPANKQRELALALVELLLNATRESAGLPAQGDGNEPEADE* |
Ga0075423_118904141 | 3300009162 | Populus Rhizosphere | MPTNMQFNLPLLDVPAAALPVNKRRELDLALVELLLSAAREGTGLPAQGEGNEPEADE* |
Ga0105242_107902702 | 3300009176 | Miscanthus Rhizosphere | MKRSAMPTNMQFNLPLLDVPAAALPANKQRELDLALVELLLSAARESAGQPAQGDGNEPETND* |
Ga0105248_107577672 | 3300009177 | Switchgrass Rhizosphere | MPTNMQFNLPFLDVPAAALPVNKRRELDLALVELLLSAALESVGLPAQGEGNEPEAHE* |
Ga0105248_108578192 | 3300009177 | Switchgrass Rhizosphere | MSTNMQFNLPLLDVPAAALPANKQRELDLALVELLLSAARESAGQPAQG |
Ga0105248_110425952 | 3300009177 | Switchgrass Rhizosphere | SAMPTNMQFNLPLLDVPAAALPVNKRRELDLALVELLLSAALESAGLPAQGEGNEPEADE |
Ga0105248_114573461 | 3300009177 | Switchgrass Rhizosphere | MQFNLPFLEASAAELPNNKQRELDLALVELLISAARENAARRSEGGENEPEVDE* |
Ga0105237_117869622 | 3300009545 | Corn Rhizosphere | MQFNLPLPDAPAAALPGNKQRELDLALVELLLSAARESVGRPAQGGGNEPEVDD* |
Ga0105237_118901902 | 3300009545 | Corn Rhizosphere | REWMKRPAIPTNLQFNLPLPDAPAAALPGNKQRELDLALVELLISAARESAGRPAQGGGNEPEVDN* |
Ga0105249_105256502 | 3300009553 | Switchgrass Rhizosphere | VNPQRREWMKRPAMSTNMQFNLPLLDVPAAALPANKQRELDLALVELLLSAARESAGQPAQGDGNEPEADE* |
Ga0134128_120353712 | 3300010373 | Terrestrial Soil | MQFNLPLPDAPAVALPFNKQRELELALVELLLSAARENADGLAQGGESEPKADD* |
Ga0126381_1004698922 | 3300010376 | Tropical Forest Soil | MKRPAMPTNIQFNLPLLEVPAAALPANKQRELDLALMELLLNAARESTSLPAQGDGNEREADE* |
Ga0134126_106695893 | 3300010396 | Terrestrial Soil | MQFTLPLPDAPAAAIPSDKQRELALALVELLLSAVRGSESRSRRGACDEPE |
Ga0134122_127253441 | 3300010400 | Terrestrial Soil | TNMQFNLPLLDVPAAALPANKQRELDLALVELLLSAARESAGQPAQGDGNEPETND* |
Ga0105246_106647981 | 3300011119 | Miscanthus Rhizosphere | PQRREWMKRSAMPTNMQFNLPFLDVPAAALPVNKRRELDLALVELLLSAALESVGLPAQGEGNEPEADK* |
Ga0137383_113009491 | 3300012199 | Vadose Zone Soil | MMKRPAKPTSPQLNLALVDVPAAAVPGNKQRELAVALVELLMSAARESVVRPTNGGGDE |
Ga0137384_105207611 | 3300012357 | Vadose Zone Soil | MMKRPAKPTSPQLNLALVDVPAAAVPGNKQRELAVALVELLMSAARESVVRPTNGGGDEPEADR* |
Ga0137361_118196451 | 3300012362 | Vadose Zone Soil | MKRSAMPTNMQFNLPLLDVPAAALPVNKRRELDLALVELLLSAARESAGQPAQGDGNEPEADK* |
Ga0137419_110066161 | 3300012925 | Vadose Zone Soil | MQFNLPLLDVPAAALPTNKQRELELALMELLLNAARECADLPAQGDGNEPEADE* |
Ga0126369_136105152 | 3300012971 | Tropical Forest Soil | MQLNLLLPDAPAAALPGNKQRELDLALVELLVSAARESAGRPAQGGGNEPEVDD* |
Ga0157370_101226563 | 3300013104 | Corn Rhizosphere | MKRPAMPLNMQFALPLPNAPAAAIPSDKQRELSLALVELLLSAARESEGCSRQGAGA* |
Ga0157369_107357541 | 3300013105 | Corn Rhizosphere | NLPLPDAPAAALPGNKQRELDLALVELLISAARESAGRPAQGGGNEPEVDN* |
Ga0157378_106127692 | 3300013297 | Miscanthus Rhizosphere | MQFNLPLLDVPAAALPANKQRELELALMELLLNAARECAGLPAQGDGNEPETND* |
Ga0157378_131782161 | 3300013297 | Miscanthus Rhizosphere | MPTNMQFNLPLLDVPAAALPVNKRRELDLALVELLLSAALESAGLPAQGEGNEPEAHE* |
Ga0157375_112423001 | 3300013308 | Miscanthus Rhizosphere | MSTNMQFNLPLLDVPAAALPANKQRELDLALVELLLSAARESAGQPAQGDGNEPEADE* |
Ga0163163_103369501 | 3300014325 | Switchgrass Rhizosphere | VNPQRREWMKRSAMPTNMQFNLPFLDVPAAALPVNKRRELDLALVELLLSAALESVGLPAQGEGNEPEAHE* |
Ga0157380_115513641 | 3300014326 | Switchgrass Rhizosphere | MPTNIQFNLPLLDVPATALPANKQRELDLALVELLLSAARESAGQPAQGDRNEPEADQ* |
Ga0157377_110402081 | 3300014745 | Miscanthus Rhizosphere | MSTNMQFNLPLLDVPAAALPANKQRELDLALVELLLSAARESAGQPAQGDGSEPEADE* |
Ga0157379_114481881 | 3300014968 | Switchgrass Rhizosphere | LLDVPATALPANKQRELDLALVEMLLNAARESAELPTQGDGNEPEADE* |
Ga0157376_116509882 | 3300014969 | Miscanthus Rhizosphere | MQFNLPFLEAPAAELPNNKQRELDLALVELLISAARENTARRSEGGENEPEVDE* |
Ga0157376_125737152 | 3300014969 | Miscanthus Rhizosphere | MQFNLPLLDVPAAALPTNKQRELELALMELLINAARECAGLPAQGDGNEPETND* |
Ga0173483_104858511 | 3300015077 | Soil | NPQRREWMKRPAMSTNMQFNLPLLDVPAAALPANKQRELDLALVELLLSAARESTGLPAQGDENELEADD* |
Ga0132258_105118312 | 3300015371 | Arabidopsis Rhizosphere | MQFNLPLLDVPAAALPVNKQRELELALMELLLNAARECAGLPAQGDGNEPETND* |
Ga0132258_132718572 | 3300015371 | Arabidopsis Rhizosphere | MQFNLPLPDVPTAALPVNKQRELELALVELLLSAARECVGVQAQGDGNEPEADE* |
Ga0132255_1010030562 | 3300015374 | Arabidopsis Rhizosphere | MKRPVTPTNMQFNLPLPDVPAAALPVNKQRELELALVELLLSAARECVGVQAQGDGNEPEADE* |
Ga0187855_107443651 | 3300018038 | Peatland | LLLPDAPAASLPGDKRQELILALAEMLLSAVRESAGQPAIGGSDESETE |
Ga0184625_105905342 | 3300018081 | Groundwater Sediment | MKRPPMPTNMQFNLPLLDAPAAALPGNKKRELDLALVELLINAARESAVLPTQGDGNEPEADK |
Ga0184628_106982921 | 3300018083 | Groundwater Sediment | MKRPGIHTNMQFNLPLPDAPAAALPRNKQRELDLALVELLLSAARESTGRPAQGGGNEPEVDD |
Ga0173482_100323742 | 3300019361 | Soil | MKRPAMSTNMQFNLPLLDVPAAALPANKQRELDLALVELLLSAARESAGQPAQGDGNEPEADE |
Ga0210396_114839221 | 3300021180 | Soil | AIRTNMQFNLPLPDAPAAALPGNKQRELDLALVELLLSAARENVGSPAQGGKSEPKADE |
Ga0213876_101322502 | 3300021384 | Plant Roots | MKRSAIRPNMQFNLPLPDAPTAALPVNKQRELDLALIELLLSAARENAGGPAQGGGSESKADE |
Ga0210393_104354112 | 3300021401 | Soil | MKRPATPTNMQFNLPLLDVPAAALPANKQRELELALMELLLNAARECAGLPAQGDGNEPEANE |
Ga0210387_102738763 | 3300021405 | Soil | MKRPATPTNLQFNLPLLDVPAATLPTNKQRELELALMELLLNAARECADLPAQGDGHEPEANQ |
Ga0210383_102476962 | 3300021407 | Soil | MKRPAIRTNMQFNLPLPDAPAAALPGNKQRELDLALVELLLSAARENVGSPAQGGKSEPKADE |
Ga0210383_102586332 | 3300021407 | Soil | MKRPAMRTNMQFNLPLPEPPAAVLPGNKQRELDLALVELLLSAARGNAGGPAQGGGSESKADK |
Ga0210398_101566312 | 3300021477 | Soil | RTNMQFNLPLPDAPAAALPGNKQRELDLALVELLLSAARENVGSPAQGGKSEPKADE |
Ga0210402_119212751 | 3300021478 | Soil | MKRPAMRTNMQFNLPLPEPPAAVLPGNKQRELDLALVELLLSAARGNAGGPA |
Ga0207680_110876282 | 3300025903 | Switchgrass Rhizosphere | MKRSAMPTNMQFNLPFLDVPAAALPVNKRRELDLALVELLLSAALESVGLPAQGEGNEPEAHE |
Ga0207695_1000796113 | 3300025913 | Corn Rhizosphere | MKRPPTRTNMQFNLPLPDAPAAALPGNKQRELDLALVELLLSAARENANGLAQGGGSEPKADD |
Ga0207671_110735762 | 3300025914 | Corn Rhizosphere | MKRPAIHTNMQFNLPLPDAPAAALPGNKQRELDLALVELLLSAARESVGRPAQGGGNEPEVDN |
Ga0207702_117354381 | 3300026078 | Corn Rhizosphere | FLVPAAALPANKQRELELALMELLLNAAREFAGLPAQGDGNEPETND |
Ga0207641_108953782 | 3300026088 | Switchgrass Rhizosphere | MKRSAMPTNMQFNLPFLDVPAAALPVNKRRELDLALVELLLSAALESVGLPAQGEGNEPEADK |
Ga0209810_10217833 | 3300027773 | Surface Soil | MKRPAVPTNMQFKLPLPDAPAAALPSDKQRELALALTELLLSAALGSNSRPGRGGRR |
Ga0209580_100284842 | 3300027842 | Surface Soil | MKRPATPTNLQFNLPLLDVPAATLPTNKQRELELALMELLLNAARERADLPAQGDGHEPEANQ |
Ga0209488_110576061 | 3300027903 | Vadose Zone Soil | DVPAAELPANKQRELALALVELLLNATRESAGLPAQGDGNEPEADE |
Ga0207428_100938933 | 3300027907 | Populus Rhizosphere | MKRPAMPTNIQFNLPLLDVPATALPANKQRELDLALVEMLLNAARESAELPTQGDGNEPEADE |
Ga0209698_103210142 | 3300027911 | Watersheds | MKRPAMPPNMQFNLPLLDVPAAALPANKQRELDLALVELLLSAARESASLPAQGDGNEPEADE |
Ga0311363_104435691 | 3300029922 | Fen | MQFNLPLLDVPAAALPANKQRELELALMELLLNAAREYAGLPAQGDGNEPEAND |
Ga0311346_114606762 | 3300029952 | Bog | RRERMKRPATPTNMQFNLPLLDVPAAALPANKQRELELALMELLLNAAREYAGLPAQGDGNEPEAND |
Ga0302192_104344521 | 3300030507 | Bog | MKRPATPTNMQFNLPLLDVPAAALPANKQRELELALMELLLNAAREYAGLPAQGDGNEPEAND |
Ga0307495_102335371 | 3300031199 | Soil | MKRSAMPTNMQFNLPLLDVPAAALPVNKRRELDLALVELLLSAALESAGLPA |
Ga0307506_100741482 | 3300031366 | Soil | MKRSAMPTNMQFNLPLLDVPAAALPVNKRRELDLALVELLLSAALESAGLPAQGEGNEPEAHE |
Ga0310813_105662512 | 3300031716 | Soil | MKRPVTPTNMQFNLPLPDVPTAALPVNKQRELELALVELLLSAARECVGVQAQGDGNEPEADE |
Ga0307468_1014138322 | 3300031740 | Hardwood Forest Soil | TNMQFNLPLLDAPAAALPGNKKRELDLALVELLINAARESAVLPTQGDGNEPEADE |
Ga0308176_111590901 | 3300031996 | Soil | MKRPTIHTIMQFNLPLPDAPAAALPGNKQRELDLALVELLVNAARESVGRPAQGGGNEP |
Ga0307472_1018965612 | 3300032205 | Hardwood Forest Soil | MKRPAIRTNMQFNLPLPDAPAAALPGNKQRELDLALVELLISAARESGGRPGQGGGNEPEVDN |
Ga0306920_1009575361 | 3300032261 | Soil | MKRPAIRTNMQFNLPLPDAPATALPGNKQKELDLALVELLLSAARENAGGLPQEGESESKADE |
Ga0335085_100578563 | 3300032770 | Soil | MKRPAMRTNMQFNLPLPEAPAAVLPGNKQRELDLALVELLLSAARGNAGGPAQGGGSESKADE |
Ga0335079_104924192 | 3300032783 | Soil | MKRPAMRTNMQFNLPLPDAPAAALPGNKQRELDLALVELLRSAARENVGSPAQGGKSEPKADE |
Ga0335080_102545132 | 3300032828 | Soil | MKRPAIRTNMQFNLPLPDAPAAALPGNKQRELDLALVELLRSAARENVGSPAQGGKSEPKADE |
Ga0335080_118358582 | 3300032828 | Soil | MKRPAMRTNMQFNLPLPDAPAAVLPGDKQRELDLALVELLLSAARGNAGGSAQ |
Ga0335070_109994232 | 3300032829 | Soil | TNMQFNLPLLDVPAAALPANKQRELELALMELLLNAARECAGLPAQGDGNEPEADE |
Ga0335081_125759092 | 3300032892 | Soil | MKRPAMPTTMQFNLPLLDVPAAELPANKQSELDLALVELLLSAARESVGLPTQGDGNEPEADE |
Ga0335076_105355802 | 3300032955 | Soil | MKRPAMRTNMQFNLPLPDAPAAVLPGDKQRELDLALVELLLSAARGNAGGSAQGGGSESKADE |
Ga0335077_115707092 | 3300033158 | Soil | MKRPAIRTNMQFNLPLPDAPAAALPGNTQRELDLALVELLRSAARENVGSPAQGGKSEPKADE |
Ga0335077_117746851 | 3300033158 | Soil | MKRPAMRTNMQFNLPLPEAPAAVLPGNKQRELDLALVELLLSAARGNAGGSAQGGGSESKADE |
Ga0310810_102996402 | 3300033412 | Soil | MKRPAMSTNMQFNLPLLDVPAAALPADKQRELDLALVELLLSAARESAGQPAQGDRNEPEADQ |
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