Metagenome Family F101826

Basic Information
Family ID	F101826
Family Type	Metagenome
Number of Sequences	102
Average Sequence Length	70 residues
Representative Sequence	MSRSRGVWPRMAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDGRLAELDEAIERKAMRMIAESEAAARSAR
Number of Associated Samples	93
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	73.53 %
% of genes near scaffold ends (potentially truncated)	27.45 %
% of genes from short scaffolds (< 2000 bps)	75.49 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	No

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (71.569 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (12.745 % of family members)
Environment Ontology (ENVO)	Unclassified (49.020 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (69.608 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82. 1Iowa-Corn-GraphCirc_02845720 2INPhiseqgaiiFebDRAFT_1050909472 3JGI10216J12902_1009426252 4JGI10216J12902_1013004222 5Ga0062593_1000441871 6Ga0062593_1000477331 7Ga0063356_1000950083 8Ga0062595_1015798381 9Ga0062594_1007729702 10Ga0070676_100005318 11Ga0070690_1015436741 12Ga0066388_1049627241 13Ga0070660_1003481952 14Ga0070689_1010472101 15Ga0070692_100518521 16Ga0070671_1000965341 17Ga0070671_1001782261 18Ga0070674_1002645683 19Ga0070673_1009444532 20Ga0070667_1016727431 21Ga0070711_1002760892 22Ga0070700_1000169741 23Ga0070662_1005008991 24Ga0068867_1004019953 25Ga0068867_1016531282 26Ga0070684_1000507852 27Ga0070695_1008286621 28Ga0068856_1001869033 29Ga0068852_1013971432 30Ga0068866_101439731 31Ga0082029_14544191 32Ga0075428_1000754441 33Ga0075428_1010695771 34Ga0075421_1001913211 35Ga0075425_1004573272 36Ga0068865_1010431422 37Ga0075424_1000193045 38Ga0075436_1010561891 39Ga0111539_101417523 40Ga0111539_103252922 41Ga0105247_114012951 42Ga0114129_104559792 43Ga0105243_116767361 44Ga0111538_107735422 45Ga0105248_111701622 46Ga0105248_115316781 47Ga0105238_116866651 48Ga0105249_100200835 49Ga0105239_100319263 50Ga0134124_101713871 51Ga0134127_127467341 52Ga0105246_103215761 53Ga0157332_10102821 54Ga0157330_10696132 55Ga0157303_100271611 56Ga0164300_103713771 57Ga0164303_101087992 58Ga0164299_105014791 59Ga0126369_107951462 60Ga0164308_103488672 61Ga0164304_101458332 62Ga0157371_109354341 63Ga0157374_103929392 64Ga0157372_110955401 65Ga0157379_106086731 66Ga0132258_100326758 67Ga0132256_1009869052 68Ga0182009_100725852 69Ga0247792_10222372 70Ga0207666_10254212 71Ga0207697_100027562 72Ga0207656_100290843 73Ga0207642_105711891 74Ga0207645_102241351 75Ga0207659_100167611 76Ga0207700_117898561 77Ga0207644_105809161 78Ga0207706_101631961 79Ga0207686_102426742 80Ga0207669_102069732 81Ga0207704_106966972 82Ga0207689_114046371 83Ga0207661_100290922 84Ga0207661_100941801 85Ga0207651_102244383 86Ga0207640_107289362 87Ga0207658_118345921 88Ga0207698_112335491 89Ga0207428_105828581 90Ga0207428_106696961 91Ga0209382_118456952 92Ga0310888_100731161 93Ga0307408_1000392151 94Ga0310904_100062603 95Ga0308175_1000148942 96Ga0310901_102863462 97Ga0308176_100180502 98Ga0310906_108258641 99Ga0310890_106067541 100Ga0310812_103702692 101Ga0310811_107811811 102Ga0247829_115451881
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82. 1Iowa-Corn-GraphCirc_02845720 2Ga0062593_1000441871 3Ga0070711_1002760892
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82. 1Iowa-Corn-GraphCirc_02845720 2Ga0062593_1000441871 3Ga0070711_1002760892
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 76.00% β-sheet: 0.00% Coil/Unstructured: 24.00%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF13672	PP2C_2	30.39
PF13493	DUF4118	13.73
PF06224	HTH_42	5.88
PF00583	Acetyltransf_1	1.96
PF08448	PAS_4	0.98
PF00291	PALP	0.98
PF08534	Redoxin	0.98
PF00266	Aminotran_5	0.98
PF00890	FAD_binding_2	0.98
PF00578	AhpC-TSA	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG3214	DNA glycosylase YcaQ, repair of DNA interstrand crosslinks	Replication, recombination and repair [L]	5.88

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	71.57 %
Unclassified	root	N/A	28.43 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	71.57 %
Unclassified	root	N/A	28.43 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	71.57 %
Unclassified	root	N/A	28.43 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.98 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	45.10 %
Unclassified	root	N/A	28.43 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	45.10 %
Unclassified	root	N/A	28.43 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.98 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	7.84 %
Unclassified	root	N/A	28.43 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	2.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.98 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	7.84 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2.94 %
Unclassified	root	N/A	28.43 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.98 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	7.84 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2.94 %
Unclassified	root	N/A	28.43 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.98 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2.94 %
Gemmatirosa	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa	4.90 %
Unclassified	root	N/A	28.43 %
unclassified Gemmatimonadaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.98 %
Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	0.98 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2.94 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	4.90 %
Unclassified	root	N/A	28.43 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2140918013\|NODE_1057_length_1913_cov_9.504443	Not Available	1945	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105090947	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	713	Open in IMG/M
3300000956\|JGI10216J12902_100942625	All Organisms → cellular organisms → Bacteria	1013	Open in IMG/M
3300000956\|JGI10216J12902_101300422	Not Available	740	Open in IMG/M
3300004114\|Ga0062593_100044187	All Organisms → cellular organisms → Bacteria	2707	Open in IMG/M
3300004114\|Ga0062593_100047733	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2637	Open in IMG/M
3300004463\|Ga0063356_100095008	All Organisms → cellular organisms → Bacteria	3210	Open in IMG/M
3300004479\|Ga0062595_101579838	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300005093\|Ga0062594_100772970	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	882	Open in IMG/M
3300005328\|Ga0070676_10000531	All Organisms → cellular organisms → Bacteria	18354	Open in IMG/M

Showing 1 to 10 of 102 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	43.14%
Host-Associated	Host-Associated	56.86%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	56.86%
Terrestrial	Environmental → Terrestrial	43.14%

Habitat	Taxonomy	Distribution
Rhizoplane	Host-Associated → Plants → Rhizoplane	14.71%
Rhizosphere	Host-Associated → Plants → Rhizosphere	42.16%
Soil	Environmental → Terrestrial → Soil	43.14%

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	13.73%
Loam	Environmental → Terrestrial → Soil → Loam	10.78%
Soil	Host-Associated → Plants → Rhizosphere → Soil	15.69%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	32.35%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	26.47%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	7.84%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.80%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.98%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	26.47%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.69%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	15.69%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	13.73%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.98%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	4.90%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	6.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	4.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.98%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	12.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	7.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	6.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.92%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.98%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.98%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918013	Soil microbial communities from Great Prairies - Iowa soil (MSU Assemblies)	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M

Showing 1 to 10 of 93 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Iowa-Corn-GraphCirc_02845720	2140918013	Soil	MAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDDRLAELDEAIERKAMRMIAESEAAARASR
INPhiseqgaiiFebDRAFT_1050909472	3300000364	Soil	MSRMRGVWPRMAPSIYRHMLERVESAVTLDDLRALRRFCRIRLENDGRLAELDEAIERKAMRMIAESEAAXRASS
JGI10216J12902_1009426252	3300000956	Soil	MSRSRGVWPRMAPSIYRHMLERVENAVTLDELRALRRFCRIRLENDGRLAELDEAIEQRAMRMIAEAEAAGRSAR*
JGI10216J12902_1013004222	3300000956	Soil	MSRSRGVWPRMAPSIYRHMLERVESAVTLDDLRALRRFCRIRLENDGRLAELDEAIERKAMRMIAESEAAGRAR*
Ga0062593_1000441871	3300004114	Soil	MGRSRGVWPRMAPSIYRHMLDRVENAVTFDELRAIRRFCRIRLEHDDRLAELDELIERKAMRMIGEAEAAARSSR*
Ga0062593_1000477331	3300004114	Soil	MSRSRGVWPRMAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDDRLAELDEAIERKAMRMIAESEAA
Ga0063356_1000950083	3300004463	Arabidopsis Thaliana Rhizosphere	MSRSRGVWPRMAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDDRLAELDEAIERKAMRMIAESEAAARASR*
Ga0062595_1015798381	3300004479	Soil	MSRSRGVWPRMAPSIYRHMLERVENAVTFDELRAIRRFCRIRLENDGRLADLDEAIEKKAMRMIAESDAAARSAR*
Ga0062594_1007729702	3300005093	Soil	MGRSRGVWPRMAPSIYRHMLERVENAVTIDELRALRRFCRIRLENDGRLAELDEAIERKAMQMIAEADAAGRAAR
Ga0070676_100005318	3300005328	Miscanthus Rhizosphere	MSRSRGVWPRMAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDDRLAELDEAIERKAMRMIAESEAASRASR*
Ga0070690_1015436741	3300005330	Switchgrass Rhizosphere	MSRSRGVWPRMAPSIYRHMLERVENAVTFDELRAIRRFCRIRLENDGRLAELDEAIEKKAMRMIAESDAAARSAR*
Ga0066388_1049627241	3300005332	Tropical Forest Soil	MSRSRGVWPRMAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDGRLAELDEAIERKAMRMIAESEAAARSAR*
Ga0070660_1003481952	3300005339	Corn Rhizosphere	MGRSRGVWPRMAPSIYRHMLERVENAVTIDELRALRRFCRIRLENDGRLAELDEAIERKAMRMIAEADAAGRAAR*
Ga0070689_1010472101	3300005340	Switchgrass Rhizosphere	PSIYRHMLERVENAVTIDELRALRRFCRIRLENDGRLAELDEAIERKAMRMIAEADAAGRAAR*
Ga0070692_100518521	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MSRSRGVWPRMAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDDRLAELDEAIERKAMRMIAESE
Ga0070671_1000965341	3300005355	Switchgrass Rhizosphere	MSRSRGLWPRMAPSIYRHMLERVENAVTLDELRALRRFCRIRLEDDGRLAELDEAIERKAMRMIAEAEAAGRASR*
Ga0070671_1001782261	3300005355	Switchgrass Rhizosphere	MAPSIYRHMLERVESAVTFDELRALRRFCRIRLVNDGRLSELDEAIERKAMRMIAEADAAGRSAR*
Ga0070674_1002645683	3300005356	Miscanthus Rhizosphere	MSRARGVWPRMAPSIYRHMLERVESAVTFDELRALRRFCRIRLVDDGRLAELDEAIERKAMRMIAEADAAGRSAR*
Ga0070673_1009444532	3300005364	Switchgrass Rhizosphere	VWPRMAPSIYRHMLDRVENAVTFDELRAIRRFCRIRLEHDDRLAELDELIERKAMRMIGEAEAAARSSR*
Ga0070667_1016727431	3300005367	Switchgrass Rhizosphere	MGRSRGVWPRMAPSIYRHMLERVESAVTIDELRALRRFCRIRLENDGRLAELDEAIERKAMQMIAEADAAGRAAR*
Ga0070711_1002760892	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MSRSRGAWPRMAPSIYRHMLERVESAVTLDDLRALRRFCRIRLENDGRLAELDEAIERKAMRMIAE
Ga0070700_1000169741	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MSRSRGVWPRMAPSIYRHMLERVESAVALDELRALRRFCRIRLENDDRLAELDEAIERKAMRMIAESEAAARPSR*
Ga0070662_1005008991	3300005457	Corn Rhizosphere	MGRSRGVWPRMAPSIYRHMLERVENAVTIDELRALRRFCRIRLENDGRLAELDEAIERKA
Ga0068867_1004019953	3300005459	Miscanthus Rhizosphere	MSRARGVWPRMAPSIYRHMLERVESAVTFDELRALRRFCRIRLVDDGRLSELDEAIERKAMRMIAEADAAGRSAR*
Ga0068867_1016531282	3300005459	Miscanthus Rhizosphere	MSRSRGLWPRMAPSIYRHMLERVDNAVTLDELRALRRFCRIRLQDDRRLAELDEAIERKAMRMIGEAEAAARSAR*
Ga0070684_1000507852	3300005535	Corn Rhizosphere	MGRSRGVWPRMAPSIYRHMLDRVENAVTFDELRAIRRFCRIRLEHEDRLAELDELIERKAMRMIGEAEAAARSSR*
Ga0070695_1008286621	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MSRSRGVWPRMAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDDRLAELDEAIERKAMRMIA
Ga0068856_1001869033	3300005614	Corn Rhizosphere	MGRSRGVWPRMAPSIYRHMLDRVENAVTFDELRAIRRFCRIRLENDGRLADLDEAIEKKAMRMIAESDAAARSAR*
Ga0068852_1013971432	3300005616	Corn Rhizosphere	MGRSRGVWPRMAPSIYRHMLERVESAVTIDELRALRRFCRIRLENDGRLAELDEAIERKAMRMIAEADAAGRAAR*
Ga0068866_101439731	3300005718	Miscanthus Rhizosphere	MSRARGVWPRMAPSIYRHMLERVESAVTFDELRALRRFCRIRLVDDGRLSELDEAIERKAMRMIA
Ga0082029_14544191	3300006169	Termite Nest	MSRSRGVWPRMGPSIYRHMLDRVQNAVTLDELRALRRFCRIRLENDGRLAELDEAIERKAMRMIAESEAA
Ga0075428_1000754441	3300006844	Populus Rhizosphere	MTRSRGVWPRMAPSIYRHMLERVENAATLDDLRALRRFCRIRLENDGRLAELDEAIEQRAMRMIAEAEAAGRSAR*
Ga0075428_1010695771	3300006844	Populus Rhizosphere	MSRSRGVWPRMAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDGRLAELDEAIERRAMRMIAEAEAAGRASR*
Ga0075421_1001913211	3300006845	Populus Rhizosphere	MAPSIYRHMLERVESAVTLHELRALRRFCRIRLDNDGRLAELDEAIERKAMRMIAEAEAAGRSAR*
Ga0075425_1004573272	3300006854	Populus Rhizosphere	MSRSRGVWPRMAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDDRLAELDEAIERKAMRMIAESEAAARAAR*
Ga0068865_1010431422	3300006881	Miscanthus Rhizosphere	MSRARGVWPRMAPSIYRHMLERVESAVTFDELRAIRRFCRIRLENDGRLADLDEAIERKAMRMIGEAEAAARSAR*
Ga0075424_1000193045	3300006904	Populus Rhizosphere	MSRSRGVWPRMAPSIYRHMLERVESAVTLDELRALRRFCRTRLENDDRLAELDEAIERKAMRMIAESEAAARASR*
Ga0075436_1010561891	3300006914	Populus Rhizosphere	MSRSRGVWPRMAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDGRLAELDEAIERKAMRMIAESEAAARASR*
Ga0111539_101417523	3300009094	Populus Rhizosphere	MAPSIYRHMLERVENAATLDDLRALRRFCRIRLENDGRLAELDEAIEQRAMRMIAEAEAAGRSAR*
Ga0111539_103252922	3300009094	Populus Rhizosphere	MAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDGRLAELDEAIERRAMRMIAEAEAAGRASR*
Ga0105247_114012951	3300009101	Switchgrass Rhizosphere	MAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDDRLAELDEAIERKAMRMIAESEAAARPSR*
Ga0114129_104559792	3300009147	Populus Rhizosphere	MAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDDRLAELDEAIERKAMRMIAEAEAAGRSAR*
Ga0105243_116767361	3300009148	Miscanthus Rhizosphere	MAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDDRLAELDEAIERKAMRMIAEAEAAARASR*
Ga0111538_107735422	3300009156	Populus Rhizosphere	MAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDGRLAELDEAIERRAMRMIAEAEAAGRAR*
Ga0105248_111701622	3300009177	Switchgrass Rhizosphere	MAPSIYRHMLDRVENAVTFDELRAIRRFCRIRLEHEDRLAELDELIERKAMRMIGEAEAAARSSR*
Ga0105248_115316781	3300009177	Switchgrass Rhizosphere	MAPSIYRHMLERVENAVTFDELRAIRRFCRIRLENDGRLAELDEAIEKKAMRMIAESDAAARSAR*
Ga0105238_116866651	3300009551	Corn Rhizosphere	MAPSIYRHMLDRVENAVTFDELRAIRRFCRIRLEHDDRLAELDELIERKAMRMIGEAEAAARSSR*
Ga0105249_100200835	3300009553	Switchgrass Rhizosphere	MAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDDRLAELDEAIERKAMRMIAESEAA
Ga0105239_100319263	3300010375	Corn Rhizosphere	MAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDDRLAELDEAIERKAMRMIAESEAAARASR*
Ga0134124_101713871	3300010397	Terrestrial Soil	MAPSIYRHMLERVESVVTLDELRALRRFCRIRLENDDRLAELDEAIERKAMRMIAESEAASRASR*
Ga0134127_127467341	3300010399	Terrestrial Soil	MAPSIYRHMLERVENAVTIDELRALRRFCRIRLENDGRLAELDEAIERKAMRMIAEADAAGR
Ga0105246_103215761	3300011119	Miscanthus Rhizosphere	QAESGGSRMGRSRGVWPRMAPSIYRHMLDRVENAVTFDELRAIRRFCRIRLEHDDRLAELDELIERKAMRMIGEAEAAARSSR*
Ga0157332_10102821	3300012511	Soil	MAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDGRLAELDEAIERKAMRMIAESEAAARAAR*
Ga0157330_10696132	3300012514	Soil	MAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDDRLAELDEAIERKAMRMIAESQAAARPSR*
Ga0157303_100271611	3300012896	Soil	MAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDDRLAELDEAIERKAMRMIAESEAASRASR*
Ga0164300_103713771	3300012951	Soil	MSRARGVWPRMAPSIYRHMLERVESAVTFDELRALRRFCRIRLVDDGRLSELDEAIERKAMRMIAESEAAARASR*
Ga0164303_101087992	3300012957	Soil	MAPSVYRHMLRRVESAVTIEELRALRRFCRIRLENDDRLAELDEAIERKAMQLIAESEASDRSSR*
Ga0164299_105014791	3300012958	Soil	MSRARGVWPRMAPSIYRHMLERVESAVTFDELRALRRFCRIRLVNDGRLSELDEAIERKAMRMIAEADAAGRSAR*
Ga0126369_107951462	3300012971	Tropical Forest Soil	MAPSIYRHMLERVESAVTFDDLRAIRRFCRIRLENDGRLAELDEAIESKAMRMIAESEAAARSAR*
Ga0164308_103488672	3300012985	Soil	MSRARGVWPRMAPSIYRHMLERVESAVTFDELRAIRRFCRIRLENDGRLADLDEAIERKAMRMIG
Ga0164304_101458332	3300012986	Soil	MSRARGVWPRMAPSIYRHMLERVESAVTFDELRALRRFCRIRLVDDGRLSELDEAIERKAMRMIGEAEAAARSAR*
Ga0157371_109354341	3300013102	Corn Rhizosphere	PRMAPSIYRHMLDRVENAVTFDELRAIRRFCRIRLEHDDRLAELDELIERKAMRMIGEAEAAARSSR*
Ga0157374_103929392	3300013296	Miscanthus Rhizosphere	MAPSIYRHMLERVENAVTFDELRAIRRFCRIRLENDGRLADLDEAIEKKAMRMIAESDAAARSAR*
Ga0157372_110955401	3300013307	Corn Rhizosphere	MAPSIYRHMLERVENAVTIDELRALRRFCRIRLENDGRLAELDEAIERKAMQMIAEADAAGRAAR*
Ga0157379_106086731	3300014968	Switchgrass Rhizosphere	MAPSIYRHMLERVESAVTIDELRALRRFCRIRLENDGRLAELDEAIERKAMRMIAEADAAGRAAR*
Ga0132258_100326758	3300015371	Arabidopsis Rhizosphere	MAPSIYRHMLERVENAATLDELRALRRFCRIRLENDGRLAELDEAIEQRAMRMIAEAEAAGRSAR*
Ga0132256_1009869052	3300015372	Arabidopsis Rhizosphere	MAPSIYRHMLERVENAVTLDELRALRRFCRIRLENDGRLAELDEAIEQRAMRMIAEAEAAGRSAR*
Ga0182009_100725852	3300021445	Soil	MSRSRGVWPRMAPSIYRHMLERVENAVTFDELRAIRRFCRIRLENDGRLADLDEAIEKKAMRMIAESDAAARSAR
Ga0247792_10222372	3300022880	Soil	MSRSRGVWPRMAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDDRLAELDEAIERKAMRMIAESEAAARASR
Ga0207666_10254212	3300025271	Corn, Switchgrass And Miscanthus Rhizosphere	SIYRHMLERVESAVTLDELRALRRFCRIRLENDDRLAELDEAIERKAMRMIAESEAAARASR
Ga0207697_100027562	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MSRSRGVWPRMAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDDRLAELDEAIERKAMRMIAESEAASRASR
Ga0207656_100290843	3300025321	Corn Rhizosphere	MGRSRGVWPRMAPSIYRHMLDRVENAVTFDELRAIRRFCRIRLEHDDRLAELDELIERKAMRMIGEAEAAARSSR
Ga0207642_105711891	3300025899	Miscanthus Rhizosphere	MSRSRGVWPRMAPSIYRHMLERVENAVTFDELRAIRRFCRIRLENDGRLAELDEAIEKKAMRMIAESDAAARSAR
Ga0207645_102241351	3300025907	Miscanthus Rhizosphere	MGRSRGVWPRMAPSIYRHMLDRVENAVTFDELRAIRRFCRIRLEHDDRLAELDELIERKAMRMI
Ga0207659_100167611	3300025926	Miscanthus Rhizosphere	MSRSRGVWPRMAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDDRLAELDEAIERKAMRMIAE
Ga0207700_117898561	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MSRSRGAWPRMAPSIYRHMLERVESAVTLDDLRALRRFCRIRLENDGRLAELDEAIERKAMRM
Ga0207644_105809161	3300025931	Switchgrass Rhizosphere	MSRARGVWPRMAPSIYRHMLERVESAVTFDELRALRRFCRIRLVNDGRLSELDEAIERKAMRMIAEADAAGRSAR
Ga0207706_101631961	3300025933	Corn Rhizosphere	MGRSRGVWPRMAPSIYRHMLERVENAVTFDELRAIRRFFRIRLENDGRLAELDEAIEKKAMRMIAESDAAARSAR
Ga0207686_102426742	3300025934	Miscanthus Rhizosphere	MSRARGVWPRMAPSIYRHMLERVESAVTFDELRALRRFCRIRLVDDGRLSELDEAIERKAMRMIAEADAAGRSAR
Ga0207669_102069732	3300025937	Miscanthus Rhizosphere	MSRARGVWPRMAPSIYRHMLERVESAVTFDELRALRRFCRIRLVDDGRLAELDEAIERKAMRMIAEADAAGRSAR
Ga0207704_106966972	3300025938	Miscanthus Rhizosphere	MSRARGVWPRMAPSIYRHMLERVESAVTFDELRAIRRFCRIRLENDGRLADLDEAIERKAMRMIGEAEAAARSAR
Ga0207689_114046371	3300025942	Miscanthus Rhizosphere	MGRSRGVWPRMAPSIYRHMLDRVENAVTFDELRAIRRFCRIRLEHDDRLAELDELIERKAMRMIAESEAAARASR
Ga0207661_100290922	3300025944	Corn Rhizosphere	MGRSRGVWPRMAPSIYRHMLDRVENAVTFDELRAIRRFCRIRLEHEDRLAELDELIERKAMRMIGEAEAAARSSR
Ga0207661_100941801	3300025944	Corn Rhizosphere	MSRSRGVWPRMAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDDRLAELDEAIERKAMRMIAESEGAARASR
Ga0207651_102244383	3300025960	Switchgrass Rhizosphere	MGRSRGVWPRMAPSIYRHMLDRVENAVTFDELRAIRRFCRIRLEHDDRLAELDELIERKAMRMIGEAEA
Ga0207640_107289362	3300025981	Corn Rhizosphere	MAPSIYRHMLERVENAVTFDELRAIRRFCRIRLENDGRLAELDEAIEKKAMRMIAESDAAARSAR
Ga0207658_118345921	3300025986	Switchgrass Rhizosphere	MGRSRGVWPRMAPSIYRHMLERVESAVTIDELRALRRFCRIRLENDGRLAELDEAIERKAMQMIAEADAAGRAAR
Ga0207698_112335491	3300026142	Corn Rhizosphere	MGRSRGVWPRMAPSIYRHMLERVESAVTIDELRALRRFCRIRLENDGRLAELDEAIERKAMRMIAEADAAGRAAR
Ga0207428_105828581	3300027907	Populus Rhizosphere	MTRSRGVWPRMAPSIYRHMLERVENAATLDDLRALRRFCRIRLENDGRLAELDEAIEQRAMRM
Ga0207428_106696961	3300027907	Populus Rhizosphere	MSRSRGVWPRMAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDGRLAELDEAIERRAMRMIAEAEAAGRASR
Ga0209382_118456952	3300027909	Populus Rhizosphere	MAPSIYRHMLERVENAATLDDLRALRRFCRIRLENDGRLAELDEAIEQRAMRMIAEAEAAGRSAR
Ga0310888_100731161	3300031538	Soil	MSRSRGVWPRMAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDDRLAELDQAIERKAMRMIAESEAAARPSR
Ga0307408_1000392151	3300031548	Rhizosphere	MSRSRGVWPRMAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDRRLAELDEAIERRAMRMIAEAEAAGRGR
Ga0310904_100062603	3300031854	Soil	MSRSRGVWPRMAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDDRLAELDEAIERKAMRMIAESEAAARPSR
Ga0308175_1000148942	3300031938	Soil	MSRSRGVWPRMAPSIYRHMLERVENAVTFDDLRAIRRFCRIRLENDGRLAELDEAIEKTAMRMIAESDAAARSAR
Ga0310901_102863462	3300031940	Soil	MSRSRGVWPRMAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDDRLAELDQAIERKAMRMIAESEAASRASR
Ga0308176_100180502	3300031996	Soil	MSRSRGVWPRMAPSIYRHMLERVENAVTFDDLRAIRRFCRIRLENDGRLAELDEAIEKKAMRMIAESDAAARSAR
Ga0310906_108258641	3300032013	Soil	MSRSRGVWPRMAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDDRLAELDEAIERKAMRMIAKSEAAS
Ga0310890_106067541	3300032075	Soil	MSRSRGVWPRMAPSIYRHMLERVEGAVTLDELRALRRFCRIRLENDDRLAELDQAIERKAMRMIAESEAAARPSR
Ga0310812_103702692	3300032421	Soil	MGRSRGVWPRMAPSIYRHMLDRVENAVTFDELRAIRRFCRIRLEHDDRLAELDELIERKA
Ga0310811_107811811	3300033475	Soil	MSRSRGVWPRMAPSIYRHMLERVENAVTFDELRAIRRFCRIRLENDGRLADLDEAIEKKA
Ga0247829_115451881	3300033550	Soil	MSRSRGVWPRMAPSIYRHMLERVESAVTLDELRALRRFCRIRLENDGRLAELDEAIERRAMRMIADAEAAGRAR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F101826

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences