NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F101799

Metagenome / Metatranscriptome Family F101799

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F101799
Family Type Metagenome / Metatranscriptome
Number of Sequences 102
Average Sequence Length 40 residues
Representative Sequence AMREAVAAVRAGRVCVVDVRVAPGYSAGATAAIMQRTPG
Number of Associated Samples 77
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 11.76 %
% of genes near scaffold ends (potentially truncated) 82.35 %
% of genes from short scaffolds (< 2000 bps) 90.20 %
Associated GOLD sequencing projects 72
AlphaFold2 3D model prediction Yes
3D model pTM-score0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (50.980 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(43.137 % of family members)
Environment Ontology (ENVO) Unclassified
(56.863 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(57.843 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.
1Ga0008090_148419701
2Ga0070699_1009732261
3Ga0066661_106602832
4Ga0070761_104786371
5Ga0066903_1028482002
6Ga0066903_1033394062
7Ga0066903_1039462201
8Ga0066903_1056880291
9Ga0066903_1081434711
10Ga0075018_104306252
11Ga0079222_109982961
12Ga0066660_106670492
13Ga0126384_102467401
14Ga0126373_108647052
15Ga0126373_124123221
16Ga0127503_101423722
17Ga0126372_102603191
18Ga0126372_105169751
19Ga0126378_130881891
20Ga0126381_1048662571
21Ga0126383_101908463
22Ga0150985_1053901634
23Ga0150984_1051635262
24Ga0137358_106814071
25Ga0126369_101686791
26Ga0182036_105353221
27Ga0182036_110078591
28Ga0182041_116396331
29Ga0182033_106051052
30Ga0182032_103805391
31Ga0182032_108665712
32Ga0182034_117892662
33Ga0182039_109347542
34Ga0182039_114393892
35Ga0187802_102933313
36Ga0187782_109701882
37Ga0210403_101302802
38Ga0210401_108069701
39Ga0210401_109694772
40Ga0210393_106435131
41Ga0210393_106832951
42Ga0210391_114420072
43Ga0126371_103870041
44Ga0126371_137192301
45Ga0242664_11437271
46Ga0242672_10457262
47Ga0242654_102909702
48Ga0207692_107366281
49Ga0209528_10892331
50Ga0209447_101945241
51Ga0209656_100088331
52Ga0209693_100746311
53Ga0170824_1248963501
54Ga0318541_100398233
55Ga0318541_103287931
56Ga0318538_101881781
57Ga0318538_105306071
58Ga0310915_100415494
59Ga0310915_107453902
60Ga0318542_102244552
61Ga0318574_106817881
62Ga0306917_104202951
63Ga0306917_107986001
64Ga0318500_102806842
65Ga0318500_104796212
66Ga0306918_111618151
67Ga0306918_112090722
68Ga0318502_103149992
69Ga0318509_101545481
70Ga0318547_100834831
71Ga0318547_103774173
72Ga0318550_103982341
73Ga0318497_106398302
74Ga0318564_103297842
75Ga0310917_109718371
76Ga0318517_100299111
77Ga0318511_105471031
78Ga0318495_100755152
79Ga0306919_112471881
80Ga0306925_104605291
81Ga0318536_104844222
82Ga0318551_106001781
83Ga0318551_107723462
84Ga0306923_107925903
85Ga0306921_113760262
86Ga0306921_115967622
87Ga0310909_100752011
88Ga0306926_103815481
89Ga0306926_105087311
90Ga0318531_105845571
91Ga0306922_103297422
92Ga0306922_122844951
93Ga0318569_100109751
94Ga0310911_108235771
95Ga0318559_103015371
96Ga0318556_100189254
97Ga0318556_102646631
98Ga0318533_101268651
99Ga0318514_104481222
100Ga0318514_107183001
101Ga0318577_105516172
102Ga0306920_1028979491
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Fibrous Signal Peptide: No Secondary Structure distribution: α-helix: 26.87%    β-sheet: 0.00%    Coil/Unstructured: 73.13%
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5101520253035AMREAVAAVRAGRVCVVDVRVAPGYSAGATAAIMQRTPGSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.48
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
51.0%49.0%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Bog Forest Soil
Freshwater Sediment
Soil
Watersheds
Vadose Zone Soil
Tropical Forest Soil
Agricultural Soil
Soil
Soil
Forest Soil
Soil
Tropical Peatland
Tropical Forest Soil
Forest Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Avena Fatua Rhizosphere
Avena Fatua Rhizosphere
Tropical Rainforest Soil
10.8%43.1%22.5%4.9%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0008090_1484197013300005363Tropical Rainforest SoilGTPKPAAIRGAVSALRDGRVCVVGVRVAGRYSAGATAAIMQRTPG*
Ga0070699_10097322613300005518Corn, Switchgrass And Miscanthus RhizosphereDPKQLMAAIREAVAAVRAGKVCVVDVRVATGYAADATAAILQRTPRQE*
Ga0066661_1066028323300005554SoilVAAVRAGKVCVVDVHVAAGYDPGAASGIMQQAGRG*
Ga0070761_1047863713300005591SoilLVAAITEAVAAVRAGKVCVVDVRVAVGYDPGGAGGIMQR*
Ga0066903_10284820023300005764Tropical Forest SoilMREAVAAVRAGRVCVADVRAAPGYSAGPTAAIMQRTPG*
Ga0066903_10333940623300005764Tropical Forest SoilVAGYLIRLSRALHEAVAAVRAGRVCVVDLRVAPGYSAGATAAIMQRTA*
Ga0066903_10394622013300005764Tropical Forest SoilAVAAVRAGKVCVVDVRVAPGYSAGATAAIMERTPGTAGTAP*
Ga0066903_10568802913300005764Tropical Forest SoilMREAVAAVRTGRVCVADVRVAPGYSAGGTAAILQRTPG*
Ga0066903_10814347113300005764Tropical Forest SoilVAAVRAGKVCVVDVRVAPGYAAGATAAIMEHKPG*
Ga0075018_1043062523300006172WatershedsVAAVRAGKVCVVDVHVATGYDPSAASGILQRAPG*
Ga0079222_1099829613300006755Agricultural SoilRLLPALNEAVAAVRAGKVCVVDVHVAAGYDPGATSGILQRAG*
Ga0066660_1066704923300006800SoilLSEAVAAVRAGKVCVVDVHVAAGYDPGAASGIMQRSG*
Ga0126384_1024674013300010046Tropical Forest SoilMREAVAAVRAGRVCVVDVRVAPGYSAGATAAIMQRTPG*
Ga0126373_1086470523300010048Tropical Forest SoilMREAVAAVRAGRVCVVDVRVAPGYSAGTTAAIMQRTPG*
Ga0126373_1241232213300010048Tropical Forest SoilMREAVAAVRAGRVCVADVRAAPGYSAGATAAIMQRTARVW
Ga0127503_1014237223300010154SoilSAMREAVAAVRAGKVCVLDVRVAPGYSAGATAAIMQRTP*
Ga0126372_1026031913300010360Tropical Forest SoilLVAAIREGVAAVRSGKVCVVDVRVAAGYAAEATAAILQRASG*
Ga0126372_1051697513300010360Tropical Forest SoilVAATRAGKVCVVDIRVAAGYDPGAASGIMQSSAGVAENRG*
Ga0126378_1308818913300010361Tropical Forest SoilLVPAMREAVAAVRAGKVCVVDVRVAPGYSASATAAIMQRTPG*
Ga0126381_10486625713300010376Tropical Forest SoilMREAVAAGRAGRVCVADVRAAPGYSAGATAAIMQRTQG*
Ga0126383_1019084633300010398Tropical Forest SoilMREAVAAVRAGRVCVVDVRVAPGYSAGATAAILQRTP*
Ga0150985_10539016343300012212Avena Fatua RhizosphereAVSEAVAAVRAGKVCDVDVRVATGYAADATAAILQRSPR*
Ga0150984_10516352623300012469Avena Fatua RhizospherePAMREAVAAVRAGKVCVVDVRVAPGYSAGATAAILQRTSG*
Ga0137358_1068140713300012582Vadose Zone SoilVAAVRAGKVCVVDVHVAAGYDPGAATGILQRAPG*
Ga0126369_1016867913300012971Tropical Forest SoilMREAIAAVRASRVCVVDVRVAPRYSAGATAAIMQRTP*
Ga0182036_1053532213300016270SoilRKLVPAMREAVAAVRAGKVCVVDVRVAPGYSAGATAAIMQRAPE
Ga0182036_1100785913300016270SoilMREAVAAVRAGRVCVVDVRVAPGYSAGATAAIMQRTPG
Ga0182041_1163963313300016294SoilLTEAVAAVRAGKVCVVDVRVAAGYDPGAASGIMQRSSGA
Ga0182033_1060510523300016319SoilMREAVAAVRAGRVCVVDVRVAPGYSTGATAAIMQRNSG
Ga0182032_1038053913300016357SoilEAVAAVRAGKVCVLDVRVAPGYSAGATAAIMQRMPE
Ga0182032_1086657123300016357SoilVAAVRAGKVCVVDVRVAAGYDPGAASGIMQRSSGG
Ga0182034_1178926623300016371SoilDPRKLVSAMREAVAAVRAGRVCVVDVRVAPGYSAGATAAIMQRTPG
Ga0182039_1093475423300016422SoilMALREAVAAVRAGKVCVVDVRVAPGYSPGATGAIMQQGR
Ga0182039_1143938923300016422SoilEDPRKLVPALREAVAAVRAGRVCVVDVRVAPGYSAGATAAIMQRTPG
Ga0187802_1029333133300017822Freshwater SedimentAAITEAVTAVRAGKVCVVDVRVAVGYDPGGAAGIIGR
Ga0187782_1097018823300017975Tropical PeatlandRKLVSALREAVAAVRSGKVCVVDVRVAPGYSPGATAAIMQQGR
Ga0210403_1013028023300020580SoilMREAVAAVRAGKVCVVDVRVAPGYSAGATAAIMDRPP
Ga0210401_1080697013300020583SoilRRLVSALGEAVATVRAGKVCVVDVHVAAGYDPGAAGGIMQRAG
Ga0210401_1096947723300020583SoilAVAALRAGKVCVVDVRVAPGYSAGATAAIMQRASG
Ga0210393_1064351313300021401SoilDDPRRLLPALNEAVAAVRAGKVCVVDVHVAAGYDPGAATGILQRAPG
Ga0210393_1068329513300021401SoilDDPHRLLPALNEAVAAVRAGKVCVVDVHVAAGYDSGAATGILQRAPG
Ga0210391_1144200723300021433SoilEAVAAVRAGKVCVVDVHVAAGYDPGAATGILQRAPG
Ga0126371_1038700413300021560Tropical Forest SoilMREAVAAVHTGRVCVADVRVAPGYSAGGTAAILQRTPG
Ga0126371_1371923013300021560Tropical Forest SoilDPRKLLPAMRDAVAAVRAGKVCVVDVRVAPGYSAGATAAIMQQSR
Ga0242664_114372713300022527SoilPAMREAVAAVRAGKVCVVDVRVAPGYSAGATAAIMQRASG
Ga0242672_104572623300022720SoilVDDPRRLLPALNEAVAAVRAGKVCVVDVHVAAGYDPGPTTGILQRAPG
Ga0242654_1029097023300022726SoilAVAAVRAGKVCVVDVRVAPGYSAGATAAILQRTPG
Ga0207692_1073662813300025898Corn, Switchgrass And Miscanthus RhizosphereNEAVAAVRAGKVCVVDVHVAAGYDPGAATGILQRAPE
Ga0209528_108923313300027610Forest SoilAVAAVRAGKVCVVDVHVATGYDPGAASGILQRAPG
Ga0209447_1019452413300027701Bog Forest SoilKKLVAAMTEAVAAVRAGKVCVVDVRVAVGYDPGGAAGIMRR
Ga0209656_1000883313300027812Bog Forest SoilVAAVRAGKVCVVDVRVAAGYDPGAASGIMQHASGG
Ga0209693_1007463113300027855SoilAVAAVRAGKVCVVDVHVATGYDPGAATGILQRAPG
Ga0170824_12489635013300031231Forest SoilKLVAAMREAVAAVRAGKVCVVDVRVAPGYSAGATAAIMQRTPG
Ga0318541_1003982333300031545SoilGVCCMMAAVRAGKVCVVDVRVAPGYSAGATAAIMQHTP
Ga0318541_1032879313300031545SoilCMMAAVRAGRVCVVDVRVAPGYSAGATAAIMQRTPG
Ga0318538_1018817813300031546SoilDPKQLVGAIGEAVAAVRAGKVCVVDVRVATGYAAEATAAILQRLSG
Ga0318538_1053060713300031546SoilREAVAAVRAGKVCVVDVRVAPGYSAGATAAIMQRTP
Ga0310915_1004154943300031573SoilALREAVAAVRAGRVCVVDVRVAPGYSAGATAAIMQRATG
Ga0310915_1074539023300031573SoilPALREAVAAVRAGKVCVVDVRVAPGYSEGATAAILRHAPG
Ga0318542_1022445523300031668SoilVPALGEAVAAVRAGKVCVVDVRVAPGYSPGATAAIMQQGR
Ga0318574_1068178813300031680SoilAIGEAVAAVRAGKVCVVDVRVATGYAAEATAAILQRSSG
Ga0306917_1042029513300031719SoilIRDGVAAVRAGKVCVVDVRVATGYAAEATAAILQRSSG
Ga0306917_1079860013300031719SoilTEAVAAVRAGKVCVVDVRVAAGYDPGAASGIMQRSSGA
Ga0318500_1028068423300031724SoilVAALTEAVAAVRAGKVCVVDVRVAAGYDPGAASGIMQRSSGA
Ga0318500_1047962123300031724SoilVEDPRKLVPALREAVAAVRAGRVCVVDVRVAPGYSAGATAAIMQRATG
Ga0306918_1116181513300031744SoilPAMREAVAAVRAGKVCVVDVRVAPGYSAGATAAIMQRTSG
Ga0306918_1120907223300031744SoilMREAVAAVRAGRVCVVDVRVAPGYSASATAAIMQRTPG
Ga0318502_1031499923300031747SoilDPRKLVAAMREAVAAVRAGRVCVVDVRVAPGYSAGATAAIMQRTPG
Ga0318509_1015454813300031768SoilSAMREAVAAVRAGRVCVVDVRVAPGYSAGATAAIMQRTPG
Ga0318547_1008348313300031781SoilPIEDPKQLVSAIREAVAAVRAGKVCVVDVRVATGYAADATVAILQRSPS
Ga0318547_1037741733300031781SoilEAVAAVRAGKVCVVDVRVAAGYDPGAASGIMQRSSGG
Ga0318550_1039823413300031797SoilALTEAVAAVRAGKVCVVDVRVAAGYDPGAASGIMQRSSGA
Ga0318497_1063983023300031805SoilGKLVPAMREAVAAVRAGRVCVVDVRVAPGYSAGATAAIMQRTPG
Ga0318564_1032978423300031831SoilVEDPRKLVSAMREAVAAVRAGRVCVVDVRVAPGYSAGATAAIMQRTPG
Ga0310917_1097183713300031833SoilMREAVAAVRTGRVCVADVRAAPGYSAGATAAIMQRTPG
Ga0318517_1002991113300031835SoilLVPAMREAVAAVRSGKVCVVDVRVAPGYSAGATAAIMQHKAD
Ga0318511_1054710313300031845SoilPAMREAVAAVRAGKVCVVDVRVAPGYSAGATAAIMQHTP
Ga0318495_1007551523300031860SoilQLVGAIREAVAAVRAGKVCVVDVHVAAGYAADATAAILQRTSG
Ga0306919_1124718813300031879SoilKLVPALREAVAAVRAGRVCVVDVRVAPGYSAGATAAIMQRATG
Ga0306925_1046052913300031890SoilKQAAMREAIAAVRAGRVCVVDVRVAPDYSAGATAAIMQRTP
Ga0318536_1048442223300031893SoilDPRTLLSAMREAVAAVRAGRVCVVDVRVAPGYSAGATAAIMQRKVG
Ga0318551_1060017813300031896SoilMREAVAAVRAGRVCVVDLRVAPGYSASATAAIMQRKVG
Ga0318551_1077234623300031896SoilRKLVSALREAVAAVRAGKVCVVDVRVAPGYSPGATAAIMQHTP
Ga0306923_1079259033300031910SoilMREAVAAVRAGRVCVVDVRVAPGYSASATAAIMQR
Ga0306921_1137602623300031912SoilDPRKLVPAMREAVAAVRAGKVCVVDVRVAPGYSAGATAAIMQRTSG
Ga0306921_1159676223300031912SoilEDPGKLVPAMREAVAAVRAGRVCVVDVRVAPGYSAGATAAIMQRTPR
Ga0310909_1007520113300031947SoilAVAAVRAGRVCVVDVRVAPGYSASATAAIMQRTPG
Ga0306926_1038154813300031954SoilDPRKLVPALREAVAAVRAGRVCVVDVRVAPGYSAGATAAIMQRATG
Ga0306926_1050873113300031954SoilREAVAAVRAGRVCVVDVRVAPGYSAGATAAIMQRTPG
Ga0318531_1058455713300031981SoilAMREAVAAVRAGRVCVVDVRVAPGYSAGATAAIMQRTPG
Ga0306922_1032974223300032001SoilMREAIAAVRAGRVCVVDVRVAPDYSAGATAAIMQRTP
Ga0306922_1228449513300032001SoilMREAVAAVRAGKVCVVDVRVAPGYSAGATAAIMQRAPE
Ga0318569_1001097513300032010SoilREAVAAVRAGKVCVVDVCVAPGYSPGATAAIMQHTP
Ga0310911_1082357713300032035SoilDPKTLVAAMTEAVAAGRAGKVCVVDVRVAVGYDPGGTAGIMRR
Ga0318559_1030153713300032039SoilVPAMREAVAAVRAGKVCVVDVRVAPGYSAGATAAIMQRTSG
Ga0318556_1001892543300032043SoilPRKLVPALREAVAAVRAGRVCVVDVRVAPGYSAGATAAIMQRATG
Ga0318556_1026466313300032043SoilEDPKQLVAAIRDGVAAVRAGKVCVVDVRVATGYAAEATAAIL
Ga0318533_1012686513300032059SoilEAVAAVRAGKVCVVDVRVAPGYSTGATAAIMQHKAD
Ga0318514_1044812223300032066SoilKLVPALREAVAAVRAGKVCVVDVRVAPGYSPGATAAIMQHTP
Ga0318514_1071830013300032066SoilLVPALREAVAALRAGKVCVVDVRVAPGYSPGATAAIVQQGR
Ga0318577_1055161723300032091SoilVEDPRKLVPALREAVAAVRAGRVCVVDVRVAPGYSAGATAAIMQRTPG
Ga0306920_10289794913300032261SoilREAVAAVRAGKVCVVDVRVAPGYSPGATAAIMQHTP


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