Metagenome / Metatranscriptome Family F101792

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101792
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	57 residues
Representative Sequence	MTISERIDCMECGGHAHLAQPLDPEMPMEAGDVLVYLCGDCNQRWDVVVDEDDLIEDE
Number of Associated Samples	78
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	67.65 %
% of genes near scaffold ends (potentially truncated)	28.43 %
% of genes from short scaffolds (< 2000 bps)	89.22 %
Associated GOLD sequencing projects	70
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.69

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (87.255 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds (20.588 % of family members)
Environment Ontology (ENVO)	Unclassified (20.588 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (43.137 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 3.49% β-sheet: 23.26% Coil/Unstructured: 73.26%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.69
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.69
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF00795	CN_hydrolase	47.06
PF04199	Cyclase	4.90
PF00106	adh_short	2.94
PF13561	adh_short_C2	1.96
PF12680	SnoaL_2	1.96
PF13672	PP2C_2	0.98
PF00881	Nitroreductase	0.98
PF04371	PAD_porph	0.98
PF06965	Na_H_antiport_1	0.98
PF00723	Glyco_hydro_15	0.98
PF13578	Methyltransf_24	0.98
PF00005	ABC_tran	0.98
PF14020	DUF4236	0.98
PF00909	Ammonium_transp	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG1878	Kynurenine formamidase	Amino acid transport and metabolism [E]	4.90
COG0004	Ammonia channel protein AmtB	Inorganic ion transport and metabolism [P]	0.98
COG2957	Agmatine/peptidylarginine deiminase	Amino acid transport and metabolism [E]	0.98
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	0.98
COG3387	Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family	Carbohydrate transport and metabolism [G]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	87.25 %
Unclassified	root	N/A	12.75 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	87.25 %
Unclassified	root	N/A	12.75 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	87.25 %
Unclassified	root	N/A	12.75 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	77.45 %
Unclassified	root	N/A	12.75 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	77.45 %
Unclassified	root	N/A	12.75 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	16.67 %
Unclassified	root	N/A	12.75 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	3.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.75 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	5.88 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	3.92 %
unclassified Acidimicrobiia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia	1.96 %
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.75 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	5.88 %
Actinobacteria bacterium IMCC26256	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinobacteria bacterium IMCC26256	3.92 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	1.96 %
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.75 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	5.88 %
Actinobacteria bacterium IMCC26256	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinobacteria bacterium IMCC26256	3.92 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	1.96 %
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.75 %
unclassified Frankia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia	5.88 %
Actinobacteria bacterium IMCC26256	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinobacteria bacterium IMCC26256	3.92 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	1.96 %
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.75 %
Frankia sp. AiPs1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. AiPs1	5.88 %
Actinobacteria bacterium IMCC26256	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinobacteria bacterium IMCC26256	3.92 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	1.96 %
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	1.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002568\|C688J35102_120987070	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	7132	Open in IMG/M
3300004114\|Ga0062593_100230628	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	1508	Open in IMG/M
3300004114\|Ga0062593_101637102	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	700	Open in IMG/M
3300004479\|Ga0062595_100233160	All Organisms → cellular organisms → Bacteria	1175	Open in IMG/M
3300004479\|Ga0062595_102065807	Not Available	553	Open in IMG/M
3300004643\|Ga0062591_100025433	All Organisms → cellular organisms → Bacteria	2978	Open in IMG/M
3300005179\|Ga0066684_10627699	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	722	Open in IMG/M
3300005181\|Ga0066678_10552119	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	765	Open in IMG/M
3300005332\|Ga0066388_100736126	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1588	Open in IMG/M
3300005356\|Ga0070674_100882339	All Organisms → cellular organisms → Bacteria	778	Open in IMG/M
3300005434\|Ga0070709_10551097	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	882	Open in IMG/M
3300005436\|Ga0070713_102106426	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	547	Open in IMG/M
3300005436\|Ga0070713_102279891	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	524	Open in IMG/M
3300005444\|Ga0070694_100811009	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	768	Open in IMG/M
3300005458\|Ga0070681_10452617	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1196	Open in IMG/M
3300005536\|Ga0070697_101218926	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	671	Open in IMG/M
3300005557\|Ga0066704_10369380	All Organisms → cellular organisms → Bacteria	959	Open in IMG/M
3300005569\|Ga0066705_10537519	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	727	Open in IMG/M
3300005764\|Ga0066903_100044667	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5292	Open in IMG/M
3300005764\|Ga0066903_100415545	All Organisms → cellular organisms → Bacteria	2224	Open in IMG/M
3300005764\|Ga0066903_100686771	All Organisms → cellular organisms → Bacteria	1800	Open in IMG/M
3300006046\|Ga0066652_100547496	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1083	Open in IMG/M
3300006057\|Ga0075026_100091088	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1501	Open in IMG/M
3300006057\|Ga0075026_100243396	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	962	Open in IMG/M
3300006057\|Ga0075026_100294548	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	884	Open in IMG/M
3300006057\|Ga0075026_100836509	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	561	Open in IMG/M
3300006059\|Ga0075017_100075785	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2306	Open in IMG/M
3300006059\|Ga0075017_100304395	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1178	Open in IMG/M
3300006059\|Ga0075017_100361590	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1082	Open in IMG/M
3300006059\|Ga0075017_101038524	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	639	Open in IMG/M
3300006059\|Ga0075017_101322744	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	566	Open in IMG/M
3300006059\|Ga0075017_101366125	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	557	Open in IMG/M
3300006102\|Ga0075015_100155462	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1192	Open in IMG/M
3300006162\|Ga0075030_101292881	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	572	Open in IMG/M
3300006162\|Ga0075030_101633073	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	504	Open in IMG/M
3300006172\|Ga0075018_10537088	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	614	Open in IMG/M
3300006174\|Ga0075014_100911402	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	527	Open in IMG/M
3300006354\|Ga0075021_10100330	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1720	Open in IMG/M
3300006354\|Ga0075021_10379747	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	884	Open in IMG/M
3300006354\|Ga0075021_10440958	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	820	Open in IMG/M
3300006641\|Ga0075471_10001229	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	16682	Open in IMG/M
3300009700\|Ga0116217_10528241	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	739	Open in IMG/M
3300010047\|Ga0126382_11433516	Not Available	632	Open in IMG/M
3300010379\|Ga0136449_100097530	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6060	Open in IMG/M
3300010397\|Ga0134124_12191266	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	592	Open in IMG/M
3300010863\|Ga0124850_1038150	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1531	Open in IMG/M
3300012206\|Ga0137380_11507933	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	557	Open in IMG/M
3300012212\|Ga0150985_114557491	All Organisms → cellular organisms → Bacteria	859	Open in IMG/M
3300012212\|Ga0150985_116023104	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	824	Open in IMG/M
3300012469\|Ga0150984_119750110	Not Available	972	Open in IMG/M
3300012922\|Ga0137394_10386280	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinobacteria bacterium IMCC26256	1194	Open in IMG/M
3300012923\|Ga0137359_10808423	All Organisms → cellular organisms → Bacteria	812	Open in IMG/M
3300012930\|Ga0137407_10380434	All Organisms → cellular organisms → Bacteria	1304	Open in IMG/M
3300012931\|Ga0153915_10992448	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	978	Open in IMG/M
3300012987\|Ga0164307_11091113	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	655	Open in IMG/M
3300014325\|Ga0163163_12026986	Not Available	635	Open in IMG/M
3300014501\|Ga0182024_10004542	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	31845	Open in IMG/M
3300014968\|Ga0157379_12176369	Not Available	551	Open in IMG/M
3300015372\|Ga0132256_100476365	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinobacteria bacterium IMCC26256	1357	Open in IMG/M
3300017944\|Ga0187786_10281923	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	673	Open in IMG/M
3300017947\|Ga0187785_10374578	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. AiPs1	677	Open in IMG/M
3300017947\|Ga0187785_10634975	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. AiPs1	553	Open in IMG/M
3300017959\|Ga0187779_10755445	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	661	Open in IMG/M
3300017961\|Ga0187778_10391573	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	910	Open in IMG/M
3300017961\|Ga0187778_10552051	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. AiPs1	769	Open in IMG/M
3300017974\|Ga0187777_10140150	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinobacteria bacterium IMCC26256	1609	Open in IMG/M
3300017974\|Ga0187777_11076126	Not Available	584	Open in IMG/M
3300018029\|Ga0187787_10257127	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	640	Open in IMG/M
3300018482\|Ga0066669_10564687	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	993	Open in IMG/M
3300021432\|Ga0210384_10614544	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	976	Open in IMG/M
3300025872\|Ga0208783_10016223	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3724	Open in IMG/M
3300025912\|Ga0207707_10361692	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1249	Open in IMG/M
3300025928\|Ga0207700_11875520	Not Available	526	Open in IMG/M
3300025937\|Ga0207669_11536985	Not Available	568	Open in IMG/M
3300027894\|Ga0209068_10038579	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2392	Open in IMG/M
3300027894\|Ga0209068_10063013	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1902	Open in IMG/M
3300027910\|Ga0209583_10146464	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	961	Open in IMG/M
3300028573\|Ga0265334_10239574	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. AiPs1	625	Open in IMG/M
3300028592\|Ga0247822_10303094	All Organisms → cellular organisms → Bacteria	1222	Open in IMG/M
3300028592\|Ga0247822_10450779	Not Available	1011	Open in IMG/M
3300028800\|Ga0265338_10970318	Not Available	576	Open in IMG/M
3300028809\|Ga0247824_10857532	Not Available	565	Open in IMG/M
3300029636\|Ga0222749_10388701	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	737	Open in IMG/M
3300029984\|Ga0311332_10742630	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	781	Open in IMG/M
3300029987\|Ga0311334_11319332	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	607	Open in IMG/M
3300030002\|Ga0311350_11391776	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. AiPs1	624	Open in IMG/M
3300030114\|Ga0311333_11492666	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	583	Open in IMG/M
3300030707\|Ga0310038_10474197	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	533	Open in IMG/M
3300031545\|Ga0318541_10878035	Not Available	500	Open in IMG/M
3300031771\|Ga0318546_10881545	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinobacteria bacterium IMCC26256	630	Open in IMG/M
3300031880\|Ga0318544_10163351	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. AiPs1	856	Open in IMG/M
3300031918\|Ga0311367_11993909	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	560	Open in IMG/M
3300031997\|Ga0315278_11230956	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	733	Open in IMG/M
3300032126\|Ga0307415_101583842	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	629	Open in IMG/M
3300032160\|Ga0311301_10433341	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1991	Open in IMG/M
3300032770\|Ga0335085_10005066	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	21442	Open in IMG/M
3300032828\|Ga0335080_11288139	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	731	Open in IMG/M
3300032893\|Ga0335069_10640714	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	1215	Open in IMG/M
3300032893\|Ga0335069_10912479	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	981	Open in IMG/M
3300032893\|Ga0335069_12786061	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	501	Open in IMG/M
3300032897\|Ga0335071_11275110	Not Available	680	Open in IMG/M
3300034123\|Ga0370479_0057553	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	980	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.22%
Host-Associated	Host-Associated	10.78%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	64.71%
Aquatic	Environmental → Aquatic	24.51%
Plants	Host-Associated → Plants	10.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	59.80%
Sediment	Environmental → Aquatic → Sediment	20.59%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.84%
Peat	Environmental → Terrestrial → Peat	4.90%
Freshwater	Environmental → Aquatic → Freshwater	1.96%
Marine	Environmental → Aquatic → Marine	1.96%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.96%
Roots	Host-Associated → Plants → Roots	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	29.41%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	20.59%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	16.67%
Loam	Environmental → Terrestrial → Soil → Loam	13.73%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.88%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	4.90%
Coastal	Environmental → Aquatic → Marine → Coastal	1.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.96%
Lake	Environmental → Aquatic → Freshwater → Lake	0.98%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.98%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	20.59%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	15.69%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	10.78%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.84%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.88%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.90%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.90%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	4.90%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.94%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	1.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.96%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.98%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.98%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.98%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.98%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.98%

Habitat	Taxonomy	Distribution
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	20.59%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	8.82%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	5.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.90%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.90%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	4.90%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.92%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.94%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	1.96%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.96%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.96%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.98%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.98%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.98%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.98%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.98%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.98%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006641	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_DNA	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300017944	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_10_20_MG	Environmental	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018029	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP06_20_MG	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300025872	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300028573	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG	Host-Associated	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300029984	I_Fen_E1 coassembly	Environmental	Open in IMG/M
3300029987	I_Fen_E3 coassembly	Environmental	Open in IMG/M
3300030002	II_Fen_N1 coassembly	Environmental	Open in IMG/M
3300030114	I_Fen_E2 coassembly	Environmental	Open in IMG/M
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031918	III_Fen_N3 coassembly	Environmental	Open in IMG/M
3300031997	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300034123	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_01D_15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
C688J35102_1209870705	3300002568	Soil	VISERIDCMECGGHAHLAQLLDPEMPVQPGDVLVYLCGDCNQRWDVVVDADDLADDDE*
Ga0062593_1002306282	3300004114	Soil	MECGGTAYLAQPIGPEDVLEPGDVVVYLCGECAQRWDVVVDEADITDD*
Ga0062593_1016371022	3300004114	Soil	VAIAERIDCMECGGTAYLAQPIGPEDDFEAGDSVVYLCGECAQRWDVVIDEDDLIDD*
Ga0062595_1002331601	3300004479	Soil	VAVAERIDCMECGGDAYLAQPLGPEDVIEAGDVLVYLCGACAQRWDVVVDEADTD*
Ga0062595_1020658072	3300004479	Soil	MECGGTAYLAQPIGPEDDFEAGDSVVYLCGECAQRWDVVIDEDDLIDD*
Ga0062591_1000254334	3300004643	Soil	PCGYGRGVPVAERIACMECGGTAYLAQPIGPEDVLEPGDVVVYLCGECAQRWDVVVDEADITDD*
Ga0066684_106276992	3300005179	Soil	MECGGDAYLAQALEPEDGVEAGDILTYICRDCAQRWDVVVDDEDLVDDD*
Ga0066678_105521191	3300005181	Soil	MPVAERIDCMECGGDAYLAQPIGPEDRIEAGDVLTYVCGACAQRWDVVVDDDDVIEDEPE
Ga0066388_1007361262	3300005332	Tropical Forest Soil	MGVAERIDCMECGGHAYLVQAIGPEDEIVEGDVLTYLCGACAQRWDVVVDAEDLIEDE*
Ga0070674_1008823393	3300005356	Miscanthus Rhizosphere	EYGRGMPIAERIACMECGYEASLAQPIGPEDDIQAGDVVVYLCGMCAQRWDVVVDEADVTD*
Ga0070709_105510973	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MECGGDAYLAQPIGPEDVVEAGDVLVYLCGACAQRWDVVVDEADIVDETDTD*
Ga0070713_1021064261	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MPIPEEIACMECGEIAHLAQPIGPDDEVEAGDVLVYLCGACNQRWDVVVDEADLAD*
Ga0070713_1022798911	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	AGVAVAARIDCMECGGDAYLAQPIGPEDVVEAGDVLVYLCGACAQRWDVVVDEADIVDETDTD*
Ga0070694_1008110092	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	VSERIDCMECGGRATLVQLIDPETPPEAGDVLVYVCGDCWQRWDVVVD
Ga0070681_104526172	3300005458	Corn Rhizosphere	MISEHIDCMECGATAHLAQPLDPEMTVVAGDVMVYVCGDCNQRWDVVVDEEDLIDDD*
Ga0070697_1012189262	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MISERIDCMECGGNAHLAQPLDPEVPVEVGDVLVYVCSDCAHRLDVVVDEDDLIEDD*
Ga0066704_103693802	3300005557	Soil	VAIAERIDCMECGGTAYLAQPIGPEDDFEAGDSVVYLCGECSQRWDVVIDEDDLIDD*
Ga0066705_105375191	3300005569	Soil	MECGGDAYLAQAPEPEDGVEAGDILTYICRDCAQRWDVVVDDEDLVDDD
Ga0066903_1000446672	3300005764	Tropical Forest Soil	MECGGSAYLAQPIGPDDEFEAGDVVVYLCGECAQRWDVVVDETDVDEDDD*
Ga0066903_1004155453	3300005764	Tropical Forest Soil	MECGGHAYLVQAIGPEDEIVEGDVLTYLCGACAQRWDVVVDAEDLIEDE*
Ga0066903_1006867713	3300005764	Tropical Forest Soil	MECGEAAYLAQPIGPEDEILPGDVVTYLCGACAQRWDVVVEDEDVDDDIS*
Ga0066652_1005474963	3300006046	Soil	DCMECGGDAYLAQALEPEDGVEAGDILTYICRDCAQRWDVVVDDEDLVDDD*
Ga0075026_1000910882	3300006057	Watersheds	MTISERINCMECGGHAHLAQPLDPEMTVEAGDVLVYLCGDCNQRWDVVVDEDDLIDDDQGD*
Ga0075026_1002433962	3300006057	Watersheds	MISERIDCMECGGHAHLAQPLDPEMPVHAGDVLVYLCGDCNQRWDVVVDEEDLVEDD*
Ga0075026_1002945482	3300006057	Watersheds	MTISERINCMECGGHAHLAQPLDPEMPVEAGDVLVYLCGECNQRWDVVVDEDDLMDDD*
Ga0075026_1008365092	3300006057	Watersheds	MTVSERIDCMECSGRGTAQLAQALDPEMPLQEGDVLVYVCSDCAQRWDVVVDEADLIEDD
Ga0075017_1000757853	3300006059	Watersheds	MTVHERIDCMECGGRATAQLVQLLDPEIELREGDVLVYVCSDCAQRWDVVVDEDDLLED*
Ga0075017_1003043951	3300006059	Watersheds	MTVSERIDCMECGGRGTAQLVQLLDPEMPLQEGDVLVYVCGDCAQRWDVVVDEADLIEDD
Ga0075017_1003615902	3300006059	Watersheds	MTISERIDCMECGGHAHLAQALDPEMPVQAGDVLVYLCGDCNQRWDVVVDEDDLIDDD*
Ga0075017_1010385242	3300006059	Watersheds	MTVSERIDCMECGGRGTAQLVQLLDPEMALQEGDVLVYVCGDCAQRWDVVVDEADLIEDD
Ga0075017_1013227441	3300006059	Watersheds	DLRCAHRSGSSRKDDRMTISERIDCMECGGTAQLAQLLDPEIVLQAGDVLVYICSDCNQRWDVVVDEDDLIEH*
Ga0075017_1013661252	3300006059	Watersheds	MTISERIDCMECGGHAHLAQALDPEMPVEAGDVLVYLCGDCNQRWDVVVD
Ga0075015_1001554622	3300006102	Watersheds	MTVHERIDCMECGGRATAQLVQLLDPEIELHEGDVLVYVCSDCAQRWDVVVDEDDLLED*
Ga0075030_1012928812	3300006162	Watersheds	MTISERIDCMECGGHAHLAQALDPEMPVRAGDVLVYLCGDCNQRWDVVVDEDDLVEDD*
Ga0075030_1016330732	3300006162	Watersheds	MTISERIDCMECGGHAHLAQALDPEMPLQAGDVLVYLCGDCNQRWDVVVDEDDLIEDD*
Ga0075018_105370882	3300006172	Watersheds	MPVSERIDCMECGGRGTAQLVQLLDPEMPLQEGDVLVYVCGDCAQRWDVVVDEADLIEDD
Ga0075014_1009114021	3300006174	Watersheds	MTVSERIDCMECGGRGTAQLVQLLDPEMALQEGDVLVYVCGDCAQRWDVVVDEAD
Ga0075021_101003303	3300006354	Watersheds	MTISERIDCMECGGHAHLAQALDPEMPVQAGDVLVYLCGDCNQRWDVVVDEDDLVEDD*
Ga0075021_103797471	3300006354	Watersheds	MTISERIDCMECGGHAHLGQPLDPDMPVQAGDVLVYICGDCNQRWDVVVDEDDLTED*
Ga0075021_104409582	3300006354	Watersheds	MTISERIDCMECGGHAHLAQALDPEMPVQAGDVLVYLCGDCNQRWDVVVDEDDLIEDD*
Ga0075471_1000122917	3300006641	Aqueous	MAIAERIDCMECGGRASLAQRLEPDDIVEAGDVIVYLCGDCSQRWDVVVDEADLAED*
Ga0116217_105282412	3300009700	Peatlands Soil	MTISERIDCMECGGRRTAQLGQVLEPEMVLQAGDVLVYICSDCNQRWDVVVDEDDLIEP*
Ga0126382_114335161	3300010047	Tropical Forest Soil	MECGGVAYLAQPIGAEDVFEPGDSVVYLCGECAQRWDVVVDEEDLIEDDDLVDD*
Ga0136449_1000975303	3300010379	Peatlands Soil	MTISERIDCMECGGTAQLAQLLDPEIVLQAGDVLVYICSDCNQRWDVVVDEDDLIDP*
Ga0134124_121912661	3300010397	Terrestrial Soil	VPIADHINCMECGGIAHLAQPIGPEDDFEAGDSVVYLCGECAQRWDVVVDEDDLIDD*
Ga0124850_10381502	3300010863	Tropical Forest Soil	VPIAQKIACMECGEAAYLAQPIGPEDEIRSGDVVTYLGGACAQRWDVVVEDEDVDDDIS*
Ga0137380_115079332	3300012206	Vadose Zone Soil	MTISERIDCMECGGDAHLVQALDPEIPVEVGDVMVYVCSDCAHRWDVVVDEDDLIDDDSFEGD*
Ga0150985_1145574912	3300012212	Avena Fatua Rhizosphere	RIDCMECGGTAYLAQPIGPEDEFEAGDSVVYLCGECAQRWDVVVDEDDLIDDDVIDD*
Ga0150985_1160231042	3300012212	Avena Fatua Rhizosphere	VPIAERIDCMECGGIAHLAQPIGPEDVLEAGDVVVYLCGECAQRWDVVVDEADVTDD*
Ga0150984_1197501102	3300012469	Avena Fatua Rhizosphere	MECGGTAYLAQPIGPEDEFEAGDSVVYLCGECAQRWDVVVDEDDLIDDDVIDD*
Ga0137394_103862801	3300012922	Vadose Zone Soil	ERIDCMECGGHAHLVQPLDPDAPPAEGDVLVYVCSDCWQRWDVVVDADDLIEDD*
Ga0137359_108084232	3300012923	Vadose Zone Soil	MSCEDYGRDVPIAERIDCMECGGTAYLAQPIGPEDDFEAGDSVVYLCGECAQRWDVVIDEDDLIDD*
Ga0137407_103804342	3300012930	Vadose Zone Soil	DTVGLMPVSEHIDCMECGGAAHLAQLIGPEDVLEPGDVVVYLCGECAQRWDVVVDADDLID*
Ga0153915_109924482	3300012931	Freshwater Wetlands	MAIAERIDCMECGGTAYLAQPIGPEDIFEAGDVVVYLCGECAQRWDVVVDEDDLIDD*
Ga0164307_110911131	3300012987	Soil	DCMECGGHAHLAQLLDPEMPVAAGDVLVYLCGDCNQRWDVVVDEDDLEPGDPSA*
Ga0163163_120269861	3300014325	Switchgrass Rhizosphere	MECGGIAHLAQPIGPEDDFEAGDSVVYLCGECAQRWDVVVDEDDLIDD*
Ga0182024_1000454221	3300014501	Permafrost	MTIRERIDCMECAGRGTAQLVQALDPEMSLQEGDVLVYVCSDCAQRWDVVVDEDDLTED*
Ga0157379_121763692	3300014968	Switchgrass Rhizosphere	VVPIAEHINCMECGGIAHLAQPIGPEDDFEAGDSVVYLCGECAQRWDVVVDEDDLIDD*
Ga0132256_1004763652	3300015372	Arabidopsis Rhizosphere	MISEHIDCMECGGSAHLAQPLDPEIPVVAGDVMVYLCGDCNQRWDVVVYEDDLIDDD*
Ga0187786_102819232	3300017944	Tropical Peatland	MAIAERIDCMECGGTAYLAQPIGPEDLFEAGDVVVYICGECAQRWDVVVDEDDLVDDE
Ga0187785_103745781	3300017947	Tropical Peatland	VAIAERIDCMECGGTAYLAQPIGPEDVFEAGDVVVYLCGECAQRWDVVVDEADLVDDADGTDAS
Ga0187785_106349752	3300017947	Tropical Peatland	MSVSGRIDCMECGGRGTAQLVQLLDPEMPLQEGDVLVYVCSDCAQRWDVVV
Ga0187779_107554452	3300017959	Tropical Peatland	MISEHIDCMECGGRGTAHLAQPLDPEITMEAGDVLVYVCSDCAQRWDVVLDEEDLIEE
Ga0187778_103915731	3300017961	Tropical Peatland	MISEHIDCMECGGRGTAHLAQPLDPEITMAAGDVLVYVCSDCAQRWDVVLDEEDLIEE
Ga0187778_105520512	3300017961	Tropical Peatland	MISEQIDCMECGGRGTAQLVQLLDPEMPLQEGDVLVYVCSDCAQRWDVVVDEADL
Ga0187777_101401502	3300017974	Tropical Peatland	MTISEQIACMECGGQAHLVQPLDPEIAVEAGDVMVYVCSDCNQRWDVVVDEADLIEDD
Ga0187777_110761262	3300017974	Tropical Peatland	MGVAERIDCMECGGHAYLAQPIGPDDEIVEGDVLTYLCGACAQRWDVVVDADDLVDDE
Ga0187787_102571271	3300018029	Tropical Peatland	VSVSERIDCMECGGHAYLAQPLDPEMPLAAGDVLVYLCGQCNQRWDVVVDEDDLT
Ga0066669_105646872	3300018482	Grasslands Soil	MECGGDAYLAQALEPEDGVEAGDILTYICRDCAQRWDVVVDDEDLVDDD
Ga0210384_106145442	3300021432	Soil	MSVREHIDCMECGGRGTAHLVQLLDPEMVLEPGDVLVYICSDCNQRWDVVVDDDDLIEH
Ga0208783_100162233	3300025872	Aqueous	MAIAERIDCMECGGRASLAQRLEPDDIVEAGDVIVYLCGDCSQRWDVVVDEADLAED
Ga0207707_103616921	3300025912	Corn Rhizosphere	MISEHIDCMECGATAHLAQPLDPEMTVVAGDVMVYVCGDCNQRWDVVVDEEDLIDDD
Ga0207700_118755202	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	VAGVAVAARIDCMECGGDAYLAQPIGPEDVVEAGDVLVYLCGACAQRWDVVVDEADIVDETDTD
Ga0207669_115369851	3300025937	Miscanthus Rhizosphere	ECGYEASLAQPIGPDDDIQAGDVVVYLCGMCAQRWDVVVDEADVTD
Ga0209068_100385792	3300027894	Watersheds	MTISERIDCMECGGHAHLAQALDPEMPVQAGDVLVYLCGDCNQRWDVVVDEDDLIEDD
Ga0209068_100630132	3300027894	Watersheds	MTISERIDCMECGGHAHLGQPLDPDMPVQAGDVLVYICGDCNQRWDVVVDEDDLTED
Ga0209583_101464641	3300027910	Watersheds	MTISERINCMECGGHAHLAQPLDPEMPVEAGDVLVYLCGDCNQRWDVVVDEED
Ga0265334_102395742	3300028573	Rhizosphere	MISERIDCMECSGRGTAQLVQALDPEMPVRAGDVLVYVCSDCAQRWDVVIDETDLVEDDEPRN
Ga0247822_103030942	3300028592	Soil	RIACMECGYEASLAQPIGPEDDIQAGDVVVYLCGMCAQRWDVVVDEADVTD
Ga0247822_104507792	3300028592	Soil	MPIAERIACMECGYEASLAQPIGPEDDIQAGDVLVYLCGMCAQRWDVVVDEADVADD
Ga0265338_109703181	3300028800	Rhizosphere	CGGRATLVQLIDPESPPEAGDVLVYVCGDCWQRWDVVVDADDLVEPDEFDG
Ga0247824_108575321	3300028809	Soil	AKATRPRAELGEAEYRRGMPIAERIACMECGYEASLAQPIGPEDDIQAGDVLVYLCGMCAQRWDVVVDEADVADD
Ga0222749_103887012	3300029636	Soil	HRSESYRRYDGMSVREHIDCMECGGRGTAHLVQLLDPEMVLEPGDVLVYICSDCNQRWDVVVDDDDLIEH
Ga0311332_107426302	3300029984	Fen	MTISERIDCMECGGHAHLAQPLDPEMPMEAGDVLVYLCGDCNQRWDVVVDEDDLIEDE
Ga0311334_113193321	3300029987	Fen	CMECGGHAHLAQPLDPEMPMEAGDVLVYLCGDCNQRWDVVVDEDDLIEDE
Ga0311350_113917761	3300030002	Fen	VISERIDCMECGGFPHLAQPLDPEIPVHAGDVLVYLCGDCNQRWDVVVDADDLEQE
Ga0311333_114926662	3300030114	Fen	MAISERIDCMECGGHAHLAQLLDPEMPVQAGDVLVYLCGDCNQRWDVVVDEDDLTEDDDRGADL
Ga0310038_104741972	3300030707	Peatlands Soil	MTISERIDCMECGGRRTAQLGQVLEPEMVLQAGDVLVYICSDCNQRWDVVVDEDDLIEP
Ga0318541_108780352	3300031545	Soil	MPIAEEIACMECGEIAHLAQPIGPDDEIEAGDVLVYLCGACNQRWDVVVDEADLEDE
Ga0318546_108815452	3300031771	Soil	MTVSEQIACMECGGQAHLVQALDPEIAVEAGDVMVYVCGDCNQRWDVVVDEADLIEDD
Ga0318544_101633511	3300031880	Soil	MECGEAAYLAQPIGPEDEILPGDVVTYLCGTCAQRWDVVVDDEDVDDDNS
Ga0311367_119939092	3300031918	Fen	TISERIDCMECGGHAHLAQPLDPEMPMEAGDVLVYLCGDCNQRWDVVVDEDDLIEDE
Ga0315278_112309562	3300031997	Sediment	MSVFEQIDCMECGGTAYLAQPIGPEDVLEAGDILTYLCGDCAQRWDVVVDEADITEE
Ga0307415_1015838422	3300032126	Rhizosphere	VPIAERIDCMECGGTAYLAQPIGPEDVIVAGDVLVYLCGECAQRWDVVVDEDDIVDDTNGSGAETGI
Ga0311301_104333414	3300032160	Peatlands Soil	MTISERIDCMECGGTAQLAQLLDPEIVLQAGDVLVYICSDCNQRWDVVVDEDDLIDP
Ga0335085_100050669	3300032770	Soil	MECGGTAYLAQPIGPEDVFEAGDSVVYLCGECAQRWDVVVDEDDLIDD
Ga0335080_112881392	3300032828	Soil	VAIAERIDCMECGGTAYLAQPIGPEDLFEAGDVVVYICGECAQRWDVVVDEDDLVDDE
Ga0335069_106407143	3300032893	Soil	RVVPIAECIACMECGGEARLAQPIGPDDIVEPGDVLVYLCGACAQRWDVVVDEADVTDD
Ga0335069_109124792	3300032893	Soil	MAIAERIDCMECGGTAYLLQPIGPEDVFEAGDVVVYVCGECAQRWDVVVDDDDLVDDA
Ga0335069_127860612	3300032893	Soil	MPIVEKIDCMECGGTAYLAQPIGPDDEIEVGDVLTYLCGECNQRWDVVVDEADLTDD
Ga0335071_112751101	3300032897	Soil	MECGGRAQLAQPIGPDDVVEVGDSLVYICADCAQRWDVVVDQADLVEPD
Ga0370479_0057553_278_448	3300034123	Untreated Peat Soil	MAIAEQIDCMECGFEAYLAQPIGPEDVIEAGDVLVYLCGTCAQRWDVVVDEDDVDD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101792

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences