Metagenome / Metatranscriptome Family F101783

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101783
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	76 residues
Representative Sequence	MEMLTSKVEPSFYCNRCDKWVDGIEDEENSPGIAGMKQVLCDDCGSAILYRPPTLWRKLQRRASRFFGNAFGSGKK
Number of Associated Samples	84
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	84.31 %
% of genes near scaffold ends (potentially truncated)	23.53 %
% of genes from short scaffolds (< 2000 bps)	62.75 %
Associated GOLD sequencing projects	75
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (43.137 % of family members)
Environment Ontology (ENVO)	Unclassified (42.157 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.000 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96 1JGI12683J13190_10087122 2JGI12636J13339_10255122 3JGI12673J13574_10005443 4JGI12635J15846_102108402 5JGI12635J15846_103463182 6JGI25381J37097_10203842 7JGI25613J43889_100045482 8JGI25390J43892_100432112 9Ga0058897_111284801 10Ga0066672_104507881 11Ga0066679_105531581 12Ga0066690_100150993 13Ga0066688_1000026214 14Ga0066697_100249234 15Ga0066661_100083543 16Ga0066704_101230631 17Ga0066691_102649242 18Ga0066656_105993772 19Ga0075018_107369211 20Ga0070716_1015843141 21Ga0066658_106875792 22Ga0066665_106380892 23Ga0099793_101110741 24Ga0099793_102789692 25Ga0066710_1020270882 26Ga0099830_109862231 27Ga0134063_100882542 28Ga0134062_107465361 29Ga0134066_100166801 30Ga0150983_143000871 31Ga0137392_103673252 32Ga0137393_110133631 33Ga0137382_106606382 34Ga0137363_100254173 35Ga0137399_100512163 36Ga0137399_115125052 37Ga0137362_100213684 38Ga0137362_101622682 39Ga0137378_100617795 40Ga0137377_101273502 41Ga0137386_109879251 42Ga0137360_100949043 43Ga0137360_113010582 44Ga0137360_116165631 45Ga0137361_101775891 46Ga0137361_112897452 47Ga0137390_101349483 48Ga0137358_100193803 49Ga0137358_100257213 50Ga0137398_103110642 51Ga0137395_108510601 52Ga0137395_109851251 53Ga0137396_100475002 54Ga0137396_110455582 55Ga0137394_1000080821 56Ga0137419_107484841 57Ga0137416_101248231 58Ga0134079_100195214 59Ga0137420_10335631 60Ga0137420_12984802 61Ga0137420_14546879 62Ga0137418_101555842 63Ga0137412_100926643 64Ga0137403_100687023 65Ga0066667_100122703 66Ga0193747_100011621 67Ga0179594_102248731 68Ga0179594_104181771 69Ga0179592_1000042617 70Ga0179592_100010665 71Ga0179592_100545934 72Ga0210407_105585692 73Ga0210403_110466571 74Ga0210399_1000069513 75Ga0210399_106303701 76Ga0210400_100225173 77Ga0137417_11453783 78Ga0209350_10657072 79Ga0209234_10301652 80Ga0209239_10467021 81Ga0209804_10736652 82Ga0257176_10281912 83Ga0257172_10092802 84Ga0257157_10025643 85Ga0209648_102330273 86Ga0208983_10063552 87Ga0209220_10005437 88Ga0209220_10123753 89Ga0209733_10792682 90Ga0209329_10780081 91Ga0209528_10544332 92Ga0209117_10143822 93Ga0209736_12055212 94Ga0209118_10015236 95Ga0209118_10636021 96Ga0209328_102735272 97Ga0209590_101855271 98Ga0209068_100807541 99Ga0137415_106217762 100Ga0307475_110321331 101Ga0307478_100011416 102Ga0307471_1000519042
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96 1JGI12683J13190_10087122 2Ga0066672_104507881 3Ga0066697_100249234 4Ga0075018_107369211 5Ga0066658_106875792 6Ga0137399_115125052 7Ga0137360_113010582 8Ga0307475_110321331 9Ga0307478_100011416
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96 1JGI12683J13190_10087122 2Ga0066672_104507881 3Ga0066697_100249234 4Ga0075018_107369211 5Ga0066658_106875792 6Ga0137399_115125052 7Ga0137360_113010582 8Ga0307475_110321331 9Ga0307478_100011416
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 15.79% β-sheet: 7.89% Coil/Unstructured: 76.32%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF02913	FAD-oxidase_C	15.69
PF11528	DUF3224	15.69
PF00389	2-Hacid_dh	6.86
PF02826	2-Hacid_dh_C	5.88
PF13183	Fer4_8	4.90
PF13432	TPR_16	2.94
PF13424	TPR_12	2.94
PF13646	HEAT_2	1.96
PF05425	CopD	0.98
PF02754	CCG	0.98

Showing 1 to 10 of 17 entries

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COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	15.69
COG0247	Fe-S cluster-containing oxidoreductase, includes glycolate oxidase subunit GlcF	Energy production and conversion [C]	0.98
COG0380	Trehalose-6-phosphate synthase, GT20 family	Carbohydrate transport and metabolism [G]	0.98
COG1276	Putative copper export protein	Inorganic ion transport and metabolism [P]	0.98
COG2048	Heterodisulfide reductase, subunit B	Energy production and conversion [C]	0.98
COG3189	Uncharacterized conserved protein YeaO, DUF488 family	Function unknown [S]	0.98

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	72.55 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	0.00 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	59.80 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	59.80 %
Unclassified	root	N/A	0.00 %

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001089\|JGI12683J13190_1008712	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	996	Open in IMG/M
3300001154\|JGI12636J13339_1025512	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	807	Open in IMG/M
3300001167\|JGI12673J13574_1000544	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1672	Open in IMG/M
3300001593\|JGI12635J15846_10210840	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1276	Open in IMG/M
3300001593\|JGI12635J15846_10346318	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	913	Open in IMG/M
3300002557\|JGI25381J37097_1020384	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1161	Open in IMG/M
3300002907\|JGI25613J43889_10004548	All Organisms → cellular organisms → Bacteria → Acidobacteria	3757	Open in IMG/M
3300002911\|JGI25390J43892_10043211	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1074	Open in IMG/M
3300004139\|Ga0058897_11128480	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	535	Open in IMG/M
3300005167\|Ga0066672_10450788	All Organisms → cellular organisms → Bacteria → Acidobacteria	840	Open in IMG/M

Showing 1 to 10 of 102 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	1.96%
Terrestrial	Environmental → Terrestrial	98.04%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Sediment	1.96%
Soil	Environmental → Terrestrial → Soil	98.04%

Habitat	Taxonomy	Distribution
Loam	Environmental → Terrestrial → Soil → Loam	18.63%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	79.41%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.96%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	17.65%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	10.78%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	20.59%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	48.04%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.96%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	17.65%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	8.82%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.92%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	11.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.98%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	43.14%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.96%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001089	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3	Environmental	Open in IMG/M
3300001154	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1	Environmental	Open in IMG/M
3300001167	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm	Environmental	Open in IMG/M
3300002907	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm	Environmental	Open in IMG/M
3300002911	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm	Environmental	Open in IMG/M
3300004139	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF230 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M

Showing 1 to 10 of 84 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12683J13190_10087122	3300001089	Forest Soil	MEMLTSKIEASFYCNRCDKWVDGIEDEENSPAIAGVKQVLCDECGGAILYRPPTLWKKLQRRASRIFGNAFGSWNK*
JGI12636J13339_10255122	3300001154	Forest Soil	MEMLTSKVDPSFYCNRCDKWVDGIEDEENSPGIAGMKQVLCDDCGSAILYRPPTLWRKLQRKASQFLGNAFGPGKK*
JGI12673J13574_10005443	3300001167	Forest Soil	MEMLTSKVEPSFYCNRCDKWVDGIEDEENSPGIGGMKQVLCDDCGSAILYRAPTLWRRLQRRASRFFGNAFGPGKK*
JGI12635J15846_102108402	3300001593	Forest Soil	MEMLTSKIEASFYCNRCDKWVDGIEDEENSPAIAGVKQVLCDECGGAILYRPPTVWKKLQRRASQFFGNAFGSWKK*
JGI12635J15846_103463182	3300001593	Forest Soil	MEMLTSKIEASFYCNRCDRWVDGIEDEENSPAIAGMKQVLCDECGGAILYRPPTLWKKLQRRASQFFGNAFGSWKK*
JGI25381J37097_10203842	3300002557	Grasslands Soil	MEILTSKVEPSFYCNRCDKWVDGIEDEENSPGIAGMKQVLCDDCGSAILYRAPTLWRKLQRKASRFYGNAFGSGKK*
JGI25613J43889_100045482	3300002907	Grasslands Soil	MEMLTSKIEPSFYCNRCDKWVDGIEDEENSPAIAGMKQVLCDECGGAILYRPPTLWKKLQRRASQIFGNAFGSWKK*
JGI25390J43892_100432112	3300002911	Grasslands Soil	METLTSKKEASFYCIRCDKWVDGIEDEENSSESGGIKQVLCDACGGAIRYRPPSLWKKLQRRTSQFFGNAFGSWKK*
Ga0058897_111284801	3300004139	Forest Soil	MEMLTSKVEPSFYCNRCDKWVDGIEDEENSPGIGGMKQVLCDDCGSAILYRAPTLWRKLQRRASRFFGNAFGPGKK*
Ga0066672_104507881	3300005167	Soil	MAILSSEKEASFYCNRCDKWVDGIEDKENSSESWGIKQVLCDECGGAIRYRPRSFWRKLRRRTSQFL
Ga0066679_105531581	3300005176	Soil	MEMLTSKVEPSFYCNRCDKWVDGIEDEENSPGIAGMKQVLCDDCGSAILYRPPTLWRKLQRRASRFFGNAFGSAKK*
Ga0066690_100150993	3300005177	Soil	MLTSKVEPSFYCNRCDKWVDGIEDEENSPGIPGMKQVLCDDCGSAILYRPPTLWRKLQRSASRFFGNAFGSGKK*
Ga0066688_1000026214	3300005178	Soil	MAILSSEKEASFYCNRCDKWVDGIEDKENSSESWGIKQVLCDECGGAIRYRPRSFWRKLRRRTSQFLGNAFNSWKKQSLRKRP*
Ga0066697_100249234	3300005540	Soil	SSEKEASLYCNRCDKWVDGIEDKENSSESWGIKQVLCDECGGAIRYRPRSFWRKLRRRTSQFLGNAFNSWKKQSLRKRP*
Ga0066661_100083543	3300005554	Soil	MEMLTSKVEPSFYCNRCDKWVDGIEDEENSPGIAGMKQVLCDDCGSAILYRPPTLWRKLQRSASRFFGNAFGSGKK*
Ga0066704_101230631	3300005557	Soil	SEKEASFYCNRCDKWVDGIEDKENSSESWGIKQVLCDECGGAIRYRPRSFWRKLRRRTSQFLGNAFNSWKKQSLRKRP*
Ga0066691_102649242	3300005586	Soil	MEMLTSKVEPSFYCNRCDKWVDGIEDEENSPGIPGMKQVLCDDCGSAILYRPPTLWRKLQRSASRFFGNAFGS
Ga0066656_105993772	3300006034	Soil	METLTSKKEASFYCIRCDKWVDGIADEENSSESAGIKQVLCDECGGAIRYRPPSFWKKLQRRTSQFFANAFGSWKR*
Ga0075018_107369211	3300006172	Watersheds	MELQTAKEQPSFYCNRCDKWVDGIGDTQNSPDPKGIIQVLCDECGGAIRYRVPGLWKRLRRRASQLFGFAFRARNG*
Ga0070716_1015843141	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MEMLTSKVEPSFYCNRCDKWVDGIEDEENSPGIGGMKQVLCDDCGSAILYRAPTLWRRLQRRASRFFGNAFGPG*
Ga0066658_106875792	3300006794	Soil	GPGWSGGSEVKLKMEMLTSKVEPSFYCNRCDKWVDGIEDEENSPGIPGMKQVLCDDCGSAILYRPPTLWRKLQRSASRFFGNAFGSRKK*
Ga0066665_106380892	3300006796	Soil	MEMLTSKVEPSFYCNRCDKWVDGIEDEENSPGIPGMKQVLCDDCGSAILYRPPTLWRKLQRRASRFFGNAFGSGKK*
Ga0099793_101110741	3300007258	Vadose Zone Soil	MEMLTSKVEPSFYCNRCDKWVDGIEDEENSPGIAGMKQVLCDDCGSAILYRPPTLWRKLQRRASRFFGNAFGSGKK*
Ga0099793_102789692	3300007258	Vadose Zone Soil	MEMLTSKIEASFYCNRCDKWVDGIEDEENSPAIAGMKQVLCDECGGAILYRPPTLWKKLQRRASQIFGNAFGSWKK*
Ga0066710_1020270882	3300009012	Grasslands Soil	MEMLTSKVETSFYCNRCDKWVDGIEDEENSPGIPGMKQVLCDVCGSAILYRPPTLWRKLQRRASRFFGNAFGSAKK
Ga0099830_109862231	3300009088	Vadose Zone Soil	MEMLTSKIEASFYCNRCDKWVDGIEDEENSPAIAGMKQVLCDECGSAILYRPPTLWKKLQRRASKILGNAFGSWKK*
Ga0134063_100882542	3300010335	Grasslands Soil	MEMLTSKVEPSFYCNRCDKWVDGIEDEENSPGIAGMKQVLCDDCGSAILYRPPTLWRKLQRRASRFFGNAFGSTKK*
Ga0134062_107465361	3300010337	Grasslands Soil	SEKEASFYCNRCDKWVDGIEDKENSSESWGIKQVLCDECGGAIRYRPPSFWKKLRRRTSQLLGNTFNSWKKQFMRKRT*
Ga0134066_100166801	3300010364	Grasslands Soil	MAILSSEKEASFYCNRCDKWVDGIEDKENSSESWGIKQVLCDECGGAIRYRPPSFWKKLRRRTSQLLGNTFNSWKKQFMRKRT*
Ga0150983_143000871	3300011120	Forest Soil	LQTAKEQPSFYCNRCDKWVDGIEDKQNSPDPREIIQVLCDECGGAIRYRVPSFWKKLQRRASRFFGSAFSARNR*
Ga0137392_103673252	3300011269	Vadose Zone Soil	MEMLTSKIEASFYCNRCDKWVDGIEDEENSPAIAGMKQVLCDECGGAILYRPPTLWKKLQRRASKILGNAFGSWKK*
Ga0137393_110133631	3300011271	Vadose Zone Soil	MEMLTSKIEASFYCNRCDKWVDGIEDEENSPAIAGMKQVLCDECGSAILYRPPTLWKKLQRRTSQ
Ga0137382_106606382	3300012200	Vadose Zone Soil	MEMLTSKVEPSFYCNRCDKWVDGIEDEENSPGIPGMKQVLCDDCGSAILYRPPTLWRKLQRSASRFFGNAFGSRKK*
Ga0137363_100254173	3300012202	Vadose Zone Soil	MEMLTSKVEPSFYCNRCDKWVDGIEDQENSPGIAGMKQVLCDDCGSAILYRAPTLWRKLQRRASRFFGNVFGLGKK*
Ga0137399_100512163	3300012203	Vadose Zone Soil	MEMLTSKIEASFYCNRCDKWVDGIEDEENSPAIAGMKQVLCDECGGAILYRPPTLWKKLQRRASKIFGNAFGSWKK*
Ga0137399_115125052	3300012203	Vadose Zone Soil	VEFAMETLTSKKEASFYCIRCDKWVDGIQDEENSSESGGIKQVLCDDCGGAIRYRPPSFWKKLQRRTSQFLGNAFGSWKK*
Ga0137362_100213684	3300012205	Vadose Zone Soil	MLTSKVEPSFYCNRCDKWVDGIEDEENSPGIAGMKQVLCDDCGSAILYRAPTLWRKLQRRASRFFGNVFGPGKK*
Ga0137362_101622682	3300012205	Vadose Zone Soil	MEMLTSKVEPSFYCNRCDKWVDGIEDEENSPGIAGMKQVLCDDCGSAILYRPPTVWRKLQRRASRFFGNTFGSGKK*
Ga0137378_100617795	3300012210	Vadose Zone Soil	MEMLTSKVEPSFYCNRCDKWVDGIEDEENSPGIPGMKQVLCDDCGSAILYRPPTLWRKLQRRASRFFGNAFGSAKK*
Ga0137377_101273502	3300012211	Vadose Zone Soil	MAILSSEKEASFYCNRCDKWVDGIEDKENSSESWGIKQVLCDECGGAIRYRPRSFWKKLRRRTSQFLGNAFNSWKKQSMRKRP*
Ga0137386_109879251	3300012351	Vadose Zone Soil	MEMLTSKVEPSFYCNRCDKWVDGIEDEENAPGIPGMKQVLCDDCGSAILYRPPTLWRKLQRRASRFFGNAFGSGKK*
Ga0137360_100949043	3300012361	Vadose Zone Soil	MEMLTSKVEPSFYCNRCDKWVDGIEDEENSPGIAGMKQVLCDDCGSAILYRAPTLWRKLQRRASRFFGNVFGLGKK*
Ga0137360_113010582	3300012361	Vadose Zone Soil	CNRCDKWVDGIEDEENSPRIAGMKQVLCDDCGSAILYRPPTLWRKLQRRASRFFGNTFGSGKK*
Ga0137360_116165631	3300012361	Vadose Zone Soil	MEMLTSKIEPSFYCNRCDKWVDGIEDEENSPAIAGMKQVLCDECGSAILYRPPTLWKKLQRRASKILGN
Ga0137361_101775891	3300012362	Vadose Zone Soil	NRCDKWVDGIEDEENSPGIAGMKQVLCDDCGSAILYRAPTLWRKLQRRASRFFGNVFGPGKK*
Ga0137361_112897452	3300012362	Vadose Zone Soil	EVKLKMEMLTSKVEPSFYCNRCDKWVDGIEDEENSPGTAGMKQVLCDDCGSAILYRPPTVWRKLQRRASRFFGNTFGSGKK*
Ga0137390_101349483	3300012363	Vadose Zone Soil	MEMLTSKVEPSFYCNRCDKWVDGIEDEENSPGIAGMKQVLCDDCGSVILYRPPTIWRKLQRRASRFFGNAFGSGKK*
Ga0137358_100193803	3300012582	Vadose Zone Soil	MEMLTSKVEPSFYCNRCDKWVDGIEDEENSPGIPGMKQVLCDDCGSAILYRPPTLWRKLQRKASRFFGNAFGSGKK*
Ga0137358_100257213	3300012582	Vadose Zone Soil	MEMLTSKVEPSFYCNRCDKWVDGIEDEENSPGIAGMKQVLCDDCGSAILYRAPTLWRKLQRRASRFFGNVFGPGKK*
Ga0137398_103110642	3300012683	Vadose Zone Soil	MEMLTSKIEASFYCNRCDKWVDGIEDEENSPAIAGMKQVLCDECGGAILYRPPTLWKKLQRRASQIFGNAFGSW
Ga0137395_108510601	3300012917	Vadose Zone Soil	MAILTSEKEASFYCNRCDKWVDGIEDKENSSESWGIKQVLCDDCGGAIRYRPPSFWKKLRRRASRFFRSLSAGK*
Ga0137395_109851251	3300012917	Vadose Zone Soil	MEMLTSKIEASFYCNRCDKWVDGIEDEENSPAIAGMKQVLCDECGSAILYRPPTLWKKLQRRTSQFLGNAFGSWKK*
Ga0137396_100475002	3300012918	Vadose Zone Soil	MEMLTSKVEPSFYCNRCDKWVDGIEDEENSPGIAGMKQVLCDDCGSAILYRPPTIWRKLRRRASRFFGNAFGSGKK*
Ga0137396_110455582	3300012918	Vadose Zone Soil	MEMLTSKIEPSFYCNRCDKWVDGIEDEENSPAIAGMKQVLCDECGGAILYRPPTLWKKLQRR
Ga0137394_1000080821	3300012922	Vadose Zone Soil	METLTSKKEASFYCIRCDKWVDGIEDEENSSESGGIKQVLCDDCGGAIRYRPPSFWKKLQRRTSQFLGNAFGSWKK*
Ga0137419_107484841	3300012925	Vadose Zone Soil	MEMLTSKIEASFYCNRCDKWVDGIEDEENSPAIAGMKQVLCDECGGAILYRPPTLWKKLQRRASKIL
Ga0137416_101248231	3300012927	Vadose Zone Soil	MEMLTSKLEPSFYCNRCDKWVDGIEDEENSPGTAGMKQVLCDDCGSAILYRPPTLWRKLQRRASRFFGNAFGSVKK*
Ga0134079_100195214	3300014166	Grasslands Soil	MAILSSEKEASFYCNRCDKWVDGIEDKENSSESWGIKQVLCDECGGAIRYRPPSFWKKLRRRTSQLLGNTFNSW
Ga0137420_10335631	3300015054	Vadose Zone Soil	MEMLTSKVEPSFYCNRCDKWVDGIEDEENSPGIAGMKQVLCDDCGSAILYRPQTLWRKLQRRASRFFGNAFGSGKK*
Ga0137420_12984802	3300015054	Vadose Zone Soil	MEMLTSKIEASFYCNRCDKWVDGIEDEENSPAIAGMKQVLCDECGGAILYRPPTLWKKLQRRTSQFLGNAFGSWKK*
Ga0137420_14546879	3300015054	Vadose Zone Soil	MEMLTSKMKRPFYCNRCDKWVDGIEDEENSPAIAGMKQVLCDECGSAILYRPPTLWKKLQRRTSQFLGNAFGSWKK*
Ga0137418_101555842	3300015241	Vadose Zone Soil	MEMLTSKVEPSFYCNRCDKWVDGIEDEENSPGIAGMKQVLCDDCGSAILYRPPTLWRKLQRRASRFFGNAFGPRKK*
Ga0137412_100926643	3300015242	Vadose Zone Soil	MEMLTSKVEPSFYCNRCDKWVDGIEDEENSPGIGGMKQVLCDDCGSAILYRPPTVWRKLQRRASRFFGNTFGSGKK*
Ga0137403_100687023	3300015264	Vadose Zone Soil	MEMLTSKIEASFYCNRCDKWVDGIEDEENSPGIAGMKQVLCDDCGSAILYRAPTLWRKLQRRASRFFGNVFGPGKK*
Ga0066667_100122703	3300018433	Grasslands Soil	MEMLTSKVEPSFYCNRCDKWVDGIEDEENSPGIAGMKQVLCDDCGSAILYRPPTLWRKLQRRASRFFGNAFGSAKK
Ga0193747_100011621	3300019885	Soil	MEMLTSKVEPSFYCNRCDKWVDGIEDEENSPGIAGMKQVLCDDCGSAILYRPPTLWRKLQRRASRFFGNTFGSGKK
Ga0179594_102248731	3300020170	Vadose Zone Soil	MEMLTSKVEPSFYCNRCDKWVDGIEDEENSPRIPGMKQVLCDDCGSAILYRPPTLWRKLQRRASRFFGNAFGSGKK
Ga0179594_104181771	3300020170	Vadose Zone Soil	METLTSKKEASFYCIRCDKWVDGIEDEENSSESGGIKQVLCDDCGGAIRYRPPSFWKKLQRRTSQFLGNAFGSWKK
Ga0179592_1000042617	3300020199	Vadose Zone Soil	MEMLTSKVEPSFYCNRCDKWVDGIEDEENSPGIAGMKQVLCDDCGSAILYRAPTLWRKLQRRASRFFGNVFGPGKK
Ga0179592_100010665	3300020199	Vadose Zone Soil	MEMLTSKIEPSFYCNRCDKWVDGIEDEENSPAIAGMKQVLCDECGGAILYRPPTLWKKLQRRASQIFGNAFGSWKK
Ga0179592_100545934	3300020199	Vadose Zone Soil	MEMLTSKIEASFYCNRCDKWVDGIEDEENSPAIAGMKQVLCDECGSAILYRPPTLWKKLQRRTSQFLGNAFGSWKK
Ga0210407_105585692	3300020579	Soil	MEMLTSKVEPSFYCNRCDKWVDGIEDEENSPGIGGMKQVLCDDCGSAILYRAPTLWRKLQRRASRFFGNAFGPGKK
Ga0210403_110466571	3300020580	Soil	MEMLTSKIEASFYCNRCDKWVDGIEDEENSPAIAGMKQVLCDECGGAILYRPPTLWKKLQRRASRIFGNAFGSWKK
Ga0210399_1000069513	3300020581	Soil	MELQTAKEQPSFYCNRCDKWVDGIEDKQNSPDPREIIQVLCDECGGAIRYRVPSFWKKLQRRASRFFGSAFSARNR
Ga0210399_106303701	3300020581	Soil	MESQTAKEQLSFYCNRCDKWVDGIEDTQNSPDPKRIIQVLCDECGSAIRYRVPSPWKKLQRRVSQFLESAFSTKNK
Ga0210400_100225173	3300021170	Soil	MEMLTSKVEPSFYCNRCDKWVDGIEDEENSPGIGGMKQVLCDDCGSAILYRAPTLWRRLQRRASRFFGNAFGPGKK
Ga0137417_11453783	3300024330	Vadose Zone Soil	MEMLTSKIEASFYCNRCDKWVDGIEDEENSPAIAGMKQVLCDECGGAILYRPPTLWKKLQRRASKILGNAFGSWKK
Ga0209350_10657072	3300026277	Grasslands Soil	MAILSSEKEASFYCNRCDKWVDGIEDKENSSESWGIKQVLCDECGGAIRYRPRSFWRKLRRRTSQFLGNAFNSWKKQSLRKRP
Ga0209234_10301652	3300026295	Grasslands Soil	MEILTSKVEPSFYCNRCDKWVDGIEDEENSPGIAGMKQVLCDDCGSAILYRAPTLWRKLQRKASRFYGNAFGSGKK
Ga0209239_10467021	3300026310	Grasslands Soil	METLTSKKEASFYCIRCDKWVDGIEDEENSSESGGIKQVLCDACGGAIRYRPPSLWKKLQRRTSQFFGNAFGSWKK
Ga0209804_10736652	3300026335	Soil	MEMLTSKVEPSFYCNRCDKWVDGIEDEENSPGIPGMKQVLCDDCGSAILYRPPTLWRKLQRSASRFFGNAFGSGKK
Ga0257176_10281912	3300026361	Soil	MEMLTSKIEASFYCNRCDKWVDGIEDEENSPAIAGMKQVLCDECGGAILYRPPTLWKKLQRRASKIFGNAFGS
Ga0257172_10092802	3300026482	Soil	MVGWPEGKLKMEMLTSKIEASFYCNRCDKWVDGIEDEENSPAIAGMKQVLCDECGGAILYRPPTLWKKLQRRASKILGNAFGSWKK
Ga0257157_10025643	3300026496	Soil	MEMLTSKIEASFYCNRCDKWVDGIEDEENSPAIAGMKQVLCDECGSAILYRPPTLWKKLQRRASKILGNAFGAWKK
Ga0209648_102330273	3300026551	Grasslands Soil	LTSKIEASFYCNRCDKWVDGIEDEENSPAIAGMKQVLCDECGSAILYRPPTLWKKLQRRTSQFLGNAFGSWKK
Ga0208983_10063552	3300027381	Forest Soil	MEMLTSKIEASFYCNRCDKWVDGIEDEENSPAIAGMKQVLCDECGSAILYRPPTLWKKLQRRASKILGNAFGSWKK
Ga0209220_10005437	3300027587	Forest Soil	MEMLTSKVDPSFYCNRCDKWVDGIEDEENSPGIAGMKQVLCDDCGSAILYRPPTLWRKLQRKASQFLGNAFRPGKK
Ga0209220_10123753	3300027587	Forest Soil	MEMLTSKIEASFYCNRCDKWVDGIEDEENSPAIAGVKQVLCDECGGAILYRPPTLWKKLQRRASRIFGNAFGSWNK
Ga0209733_10792682	3300027591	Forest Soil	MEMLTSKIEASFYCNRCDRWVDGIEDEENSPAIAGMKQVLCDECGGAILYRPPTLWKKLQRRASQFFGNAFGSWKK
Ga0209329_10780081	3300027605	Forest Soil	MEMLTSKVEPSFYCNRCDKWVDGIEDEENSPAIAGMKQVLCDECGSAILYRAPTLWRRLQRRASRFFGNAFGPGKK
Ga0209528_10544332	3300027610	Forest Soil	MEMLTSKVEPSFYCNRCDKWVDGIEDEENSPGIAGMKQVLCDDCGSAILYRAPTLWRKLQRRASRFFG
Ga0209117_10143822	3300027645	Forest Soil	MEMLTSKIEASFYCNRCDKWVDGIEDEENSPAIAGVKQVLCDECGGAILYRPPTVWKKLQRRASQFFGNAFGSWKK
Ga0209736_12055212	3300027660	Forest Soil	LKMEMLTSKVEPSFYCNRCDKWVDGIEDEENSPGIAGMKQVLCDDCGSAILYRAPTLWRKLQRKASRFFGNAFGPGKK
Ga0209118_10015236	3300027674	Forest Soil	MEMLTSKVDPSFYCNRCDKWVDGIEDEENSPGIAGMKQVLCDDCGSAILYRPPTLWRKLQRKASQFLGNAFGPGKK
Ga0209118_10636021	3300027674	Forest Soil	MLTSKVEPSFYCNRCDKWVDGIEDEENSPGIAGMKQVLCDDCGSAILYRAPTLWRKLQRKASRFFGNAFGPGKK
Ga0209328_102735272	3300027727	Forest Soil	MEMLTSKVEPSFYCNRCDKWVDGIEDEENSPGIAGMKQVLCDDCGSAILYRAPTLWRRLQRRASRFFGNAFGPGKK
Ga0209590_101855271	3300027882	Vadose Zone Soil	KVEPSFYCNRCDKWVDGIEDEENSPGIAGMKQVLCDDCGSAILYRPPTLWRKLQRRASRFFGNAFGSGKK
Ga0209068_100807541	3300027894	Watersheds	MELQTAKEQPSFYCNRCDKWVDGIGDTQNSPDPKGIIQVLCDECGGAIRYRVPGLWKRLRRRASQLFGF
Ga0137415_106217762	3300028536	Vadose Zone Soil	MEMLTSKVEPSFYCNRCDKWVDGIEDEENSPGTAGMKQVLCDDCGSAILYRPPTLWRKLQRRASRFFGNAFGSGKK
Ga0307475_110321331	3300031754	Hardwood Forest Soil	MGLLSLREPTTFYCIRCDKWVEGIEDEENSPKNVGIKQVLCSECGGAILYRVPTFWKKLRWKASQFFGTAFGFWKK
Ga0307478_100011416	3300031823	Hardwood Forest Soil	MVQVTGGFFRMKLQTTKSQPSFYCNRCDKWVDGIEDTQNSPDPKAIIQVLCDECGGAIRYRVPSLWKRLQRRASQFFGSTFSARNR
Ga0307471_1000519042	3300032180	Hardwood Forest Soil	MAILSSEKEASFYCNRCDKWVDGIEDKENSSGSWGIKQVLCDECGGAIRYRPPSFWKKLRRRTSQFLGNAIDSWKKQSMRKRP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101783

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences