Metagenome Family F101779

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101779
Family Type	Metagenome
Number of Sequences	102
Average Sequence Length	61 residues
Representative Sequence	MNQNVEREEVYVVECVWCGAKIREDNEEESTGVCLKCFYQMLTNHLQSQKRTAYGDFVSDR
Number of Associated Samples	78
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	86.14 %
% of genes near scaffold ends (potentially truncated)	18.63 %
% of genes from short scaffolds (< 2000 bps)	76.47 %
Associated GOLD sequencing projects	69
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.51

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (83.333 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (15.686 % of family members)
Environment Ontology (ENVO)	Unclassified (36.275 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (54.902 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 21.35% β-sheet: 13.48% Coil/Unstructured: 65.17%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.51
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.51
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF02223	Thymidylate_kin	14.71
PF00300	His_Phos_1	13.73
PF13620	CarboxypepD_reg	3.92
PF01451	LMWPc	2.94
PF13557	Phenol_MetA_deg	2.94
PF13594	Obsolete Pfam Family	2.94
PF02417	Chromate_transp	1.96
PF06739	SBBP	0.98
PF06961	DUF1294	0.98
PF00146	NADHdh	0.98
PF01569	PAP2	0.98
PF02541	Ppx-GppA	0.98
PF01047	MarR	0.98
PF00994	MoCF_biosynth	0.98
PF03544	TonB_C	0.98
PF11077	DUF2616	0.98
PF00486	Trans_reg_C	0.98
PF00313	CSD	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0125	Thymidylate kinase	Nucleotide transport and metabolism [F]	14.71
COG0248	Exopolyphosphatase/pppGpp-phosphohydrolase	Signal transduction mechanisms [T]	1.96
COG2059	Chromate transport protein ChrA	Inorganic ion transport and metabolism [P]	1.96
COG0650	Formate hydrogenlyase subunit HyfC	Energy production and conversion [C]	0.98
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	0.98
COG1005	NADH:ubiquinone oxidoreductase subunit 1 (chain H)	Energy production and conversion [C]	0.98
COG3326	Uncharacterized membrane protein YsdA, DUF1294 family	Function unknown [S]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	83.33 %
Unclassified	root	N/A	16.67 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	83.33 %
Unclassified	root	N/A	16.67 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	83.33 %
Unclassified	root	N/A	16.67 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	51.96 %
Unclassified	root	N/A	16.67 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.67 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	13.73 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	6.86 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.96 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.67 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.73 %
unclassified Blastocatellia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia	4.90 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.96 %
Blastocatellales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales	0.98 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.67 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.73 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	4.90 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.96 %
Pyrinomonadaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae	0.98 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.67 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.73 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	4.90 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.96 %
Pyrinomonas	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas	0.98 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.67 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.73 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	4.90 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.96 %
Pyrinomonas methylaliphatogenes	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	0.98 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_104720188	All Organisms → cellular organisms → Bacteria	2881	Open in IMG/M
3300000956\|JGI10216J12902_104734380	All Organisms → cellular organisms → Bacteria → Acidobacteria	2027	Open in IMG/M
3300003203\|JGI25406J46586_10009883	All Organisms → cellular organisms → Bacteria → Proteobacteria	4260	Open in IMG/M
3300003321\|soilH1_10036426	All Organisms → cellular organisms → Bacteria → Acidobacteria	1090	Open in IMG/M
3300003324\|soilH2_10177563	All Organisms → cellular organisms → Bacteria	1323	Open in IMG/M
3300004114\|Ga0062593_100276525	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1410	Open in IMG/M
3300004114\|Ga0062593_101075311	All Organisms → cellular organisms → Bacteria → Acidobacteria	832	Open in IMG/M
3300004156\|Ga0062589_100635240	All Organisms → cellular organisms → Bacteria	934	Open in IMG/M
3300004157\|Ga0062590_100177274	Not Available	1505	Open in IMG/M
3300004157\|Ga0062590_100486120	All Organisms → cellular organisms → Bacteria	1047	Open in IMG/M
3300004479\|Ga0062595_100695018	Not Available	815	Open in IMG/M
3300005336\|Ga0070680_101143058	All Organisms → cellular organisms → Bacteria	673	Open in IMG/M
3300005345\|Ga0070692_11131543	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300005366\|Ga0070659_102065896	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	512	Open in IMG/M
3300005440\|Ga0070705_100135038	All Organisms → cellular organisms → Bacteria	1615	Open in IMG/M
3300005440\|Ga0070705_100924808	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	703	Open in IMG/M
3300005444\|Ga0070694_100629167	All Organisms → cellular organisms → Bacteria	867	Open in IMG/M
3300005518\|Ga0070699_101995773	Not Available	530	Open in IMG/M
3300005539\|Ga0068853_101872134	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300005545\|Ga0070695_100109074	All Organisms → cellular organisms → Bacteria	1875	Open in IMG/M
3300005545\|Ga0070695_100418075	All Organisms → cellular organisms → Bacteria → Acidobacteria	1020	Open in IMG/M
3300005546\|Ga0070696_100459933	All Organisms → cellular organisms → Bacteria	1006	Open in IMG/M
3300005546\|Ga0070696_101828809	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300005547\|Ga0070693_100025785	All Organisms → cellular organisms → Bacteria	3166	Open in IMG/M
3300005547\|Ga0070693_100130050	All Organisms → cellular organisms → Bacteria	1573	Open in IMG/M
3300005548\|Ga0070665_102215587	Not Available	553	Open in IMG/M
3300005563\|Ga0068855_102183931	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	556	Open in IMG/M
3300005578\|Ga0068854_101181797	All Organisms → cellular organisms → Bacteria → Proteobacteria	685	Open in IMG/M
3300005614\|Ga0068856_102430824	Not Available	531	Open in IMG/M
3300005615\|Ga0070702_101560573	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300005617\|Ga0068859_101180220	All Organisms → cellular organisms → Bacteria → Proteobacteria	843	Open in IMG/M
3300005842\|Ga0068858_101050461	Not Available	799	Open in IMG/M
3300005844\|Ga0068862_101280021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	734	Open in IMG/M
3300006173\|Ga0070716_100022107	All Organisms → cellular organisms → Bacteria	3359	Open in IMG/M
3300006173\|Ga0070716_100229649	All Organisms → cellular organisms → Bacteria → Acidobacteria	1252	Open in IMG/M
3300006173\|Ga0070716_101618287	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	532	Open in IMG/M
3300006237\|Ga0097621_101791610	Not Available	585	Open in IMG/M
3300006755\|Ga0079222_10450725	All Organisms → cellular organisms → Bacteria → Acidobacteria	920	Open in IMG/M
3300006755\|Ga0079222_11639620	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300006804\|Ga0079221_11513056	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	539	Open in IMG/M
3300006871\|Ga0075434_101982565	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	588	Open in IMG/M
3300006894\|Ga0079215_10499318	Not Available	758	Open in IMG/M
3300006903\|Ga0075426_10030978	All Organisms → cellular organisms → Bacteria → Acidobacteria	3828	Open in IMG/M
3300006914\|Ga0075436_101370096	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	536	Open in IMG/M
3300006918\|Ga0079216_10014486	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2796	Open in IMG/M
3300006954\|Ga0079219_10015683	All Organisms → cellular organisms → Bacteria	2683	Open in IMG/M
3300006954\|Ga0079219_10105721	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1395	Open in IMG/M
3300006954\|Ga0079219_10996619	Not Available	694	Open in IMG/M
3300007004\|Ga0079218_10058147	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2444	Open in IMG/M
3300007004\|Ga0079218_10371434	All Organisms → cellular organisms → Bacteria → Acidobacteria	1203	Open in IMG/M
3300009093\|Ga0105240_11703970	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	658	Open in IMG/M
3300009148\|Ga0105243_11891233	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	629	Open in IMG/M
3300009162\|Ga0075423_10131334	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2629	Open in IMG/M
3300009162\|Ga0075423_12803523	All Organisms → cellular organisms → Bacteria → Acidobacteria	534	Open in IMG/M
3300009174\|Ga0105241_10023321	All Organisms → cellular organisms → Bacteria → Acidobacteria	4589	Open in IMG/M
3300009174\|Ga0105241_10065706	All Organisms → cellular organisms → Bacteria → Acidobacteria	2803	Open in IMG/M
3300009177\|Ga0105248_10044603	All Organisms → cellular organisms → Bacteria → Acidobacteria	4973	Open in IMG/M
3300009177\|Ga0105248_12020946	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	655	Open in IMG/M
3300010046\|Ga0126384_10664585	All Organisms → cellular organisms → Bacteria → Acidobacteria	919	Open in IMG/M
3300010358\|Ga0126370_11888717	All Organisms → cellular organisms → Bacteria → Acidobacteria	580	Open in IMG/M
3300010362\|Ga0126377_13195813	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	529	Open in IMG/M
3300010373\|Ga0134128_12350282	Not Available	587	Open in IMG/M
3300010397\|Ga0134124_13159719	Not Available	504	Open in IMG/M
3300010399\|Ga0134127_10844268	All Organisms → cellular organisms → Bacteria → Acidobacteria	967	Open in IMG/M
3300012957\|Ga0164303_10557028	All Organisms → cellular organisms → Bacteria → Acidobacteria	746	Open in IMG/M
3300012989\|Ga0164305_10302821	All Organisms → cellular organisms → Bacteria → Acidobacteria	1182	Open in IMG/M
3300013296\|Ga0157374_10130380	All Organisms → cellular organisms → Bacteria	2433	Open in IMG/M
3300013296\|Ga0157374_10924405	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	890	Open in IMG/M
3300013307\|Ga0157372_10372305	All Organisms → cellular organisms → Bacteria	1664	Open in IMG/M
3300013307\|Ga0157372_11135239	All Organisms → cellular organisms → Bacteria	904	Open in IMG/M
3300015371\|Ga0132258_10640078	All Organisms → cellular organisms → Bacteria	2673	Open in IMG/M
3300015371\|Ga0132258_12635898	Not Available	1255	Open in IMG/M
3300015373\|Ga0132257_100436655	All Organisms → cellular organisms → Bacteria → Acidobacteria	1597	Open in IMG/M
3300015373\|Ga0132257_104371963	Not Available	514	Open in IMG/M
3300019360\|Ga0187894_10001557	All Organisms → cellular organisms → Bacteria → Acidobacteria	29172	Open in IMG/M
3300020146\|Ga0196977_1000706	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	15794	Open in IMG/M
3300021290\|Ga0213902_103060	All Organisms → cellular organisms → Bacteria → Acidobacteria	758	Open in IMG/M
3300021445\|Ga0182009_10089101	All Organisms → cellular organisms → Bacteria → Acidobacteria	1388	Open in IMG/M
3300024179\|Ga0247695_1000218	All Organisms → cellular organisms → Bacteria	8643	Open in IMG/M
3300025911\|Ga0207654_10024462	All Organisms → cellular organisms → Bacteria	3247	Open in IMG/M
3300025911\|Ga0207654_10174811	All Organisms → cellular organisms → Bacteria → Acidobacteria	1397	Open in IMG/M
3300025911\|Ga0207654_11360258	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	518	Open in IMG/M
3300025921\|Ga0207652_10769969	Not Available	856	Open in IMG/M
3300025939\|Ga0207665_11518759	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	532	Open in IMG/M
3300025941\|Ga0207711_10026338	All Organisms → cellular organisms → Bacteria → Acidobacteria	4878	Open in IMG/M
3300025981\|Ga0207640_11603559	All Organisms → cellular organisms → Bacteria → Acidobacteria	586	Open in IMG/M
3300026035\|Ga0207703_10829149	All Organisms → cellular organisms → Bacteria → Proteobacteria	884	Open in IMG/M
3300027266\|Ga0209215_1010209	All Organisms → cellular organisms → Bacteria	1139	Open in IMG/M
3300027530\|Ga0209216_1000765	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	6211	Open in IMG/M
3300027691\|Ga0209485_1140467	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	714	Open in IMG/M
3300027775\|Ga0209177_10337781	Not Available	586	Open in IMG/M
3300027787\|Ga0209074_10246283	All Organisms → cellular organisms → Bacteria	692	Open in IMG/M
3300027886\|Ga0209486_10067594	All Organisms → cellular organisms → Bacteria → Acidobacteria	1828	Open in IMG/M
3300031455\|Ga0307505_10000134	All Organisms → cellular organisms → Bacteria → Acidobacteria	91966	Open in IMG/M
3300031548\|Ga0307408_100023261	All Organisms → cellular organisms → Bacteria	4219	Open in IMG/M
3300031716\|Ga0310813_11781780	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	578	Open in IMG/M
3300031824\|Ga0307413_11065797	All Organisms → cellular organisms → Bacteria → Acidobacteria	696	Open in IMG/M
3300031824\|Ga0307413_11287530	All Organisms → cellular organisms → Bacteria → Acidobacteria	639	Open in IMG/M
3300032004\|Ga0307414_11879205	Not Available	559	Open in IMG/M
3300032144\|Ga0315910_10252546	All Organisms → cellular organisms → Bacteria → Acidobacteria	1332	Open in IMG/M
3300032157\|Ga0315912_10213794	All Organisms → cellular organisms → Bacteria → Acidobacteria	1514	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	59.80%
Host-Associated	Host-Associated	40.20%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	59.80%
Plants	Host-Associated → Plants	40.20%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	58.82%
Rhizosphere	Host-Associated → Plants → Rhizosphere	24.51%
Rhizoplane	Host-Associated → Plants → Rhizoplane	14.71%
Cave	Environmental → Terrestrial → Cave	0.98%
Roots	Host-Associated → Plants → Roots	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	38.24%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	22.55%
Loam	Environmental → Terrestrial → Soil → Loam	19.61%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	10.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.92%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.96%
Sand	Environmental → Terrestrial → Soil → Sand	0.98%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.98%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	22.55%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	21.57%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	17.65%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.73%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	10.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.92%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.98%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.98%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.98%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.98%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	15.69%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	13.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	5.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	5.88%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	3.92%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.94%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.96%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.98%
Microbial Mat On Rocks	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks	0.98%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003203	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300003321	Sugarcane bulk soil Sample H1	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300019360	White microbial mat communities from a lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - GBC170108-1 metaG	Environmental	Open in IMG/M
3300020146	Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_10-13C	Environmental	Open in IMG/M
3300021290	Switchgrass-associated microbial communities from reclaimed mine lands soil in West Virginia, United States ? Hobet_Cave_2	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300024179	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK36	Environmental	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027266	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027530	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027691	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100 (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300031455	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_S	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032144	Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil	Environmental	Open in IMG/M
3300032157	Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soil	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1047201884	3300000956	Soil	MMMFSERRKMNQSSKDQKDLYVVHCVWCGASIREDNEEETNGVCLKCFYQILSNHLQSQKQAQYGEFVSDR*
JGI10216J12902_1047343803	3300000956	Soil	MSQIPTEREDVYLVECVWCGTKIREDKEEDADAVCLKCFYQMLSNHLQSQKRSVYGDFVSDR*
JGI25406J46586_100098835	3300003203	Tabebuia Heterophylla Rhizosphere	MLSMLEQQDMYVVECVWCGAKIRHDNEEDTTGVCLKCFYEMLTNHLQSQKQTAYGDFVSDR*
soilH1_100364262	3300003321	Sugarcane Root And Bulk Soil	MNQNLEQEDVYVVECVWCGAKIREDNDEESTGVCLKCFYQMLTNHLQSQKQTAYGDSVSDR*
soilH2_101775632	3300003324	Sugarcane Root And Bulk Soil	MLAMNQRLEQEDVYVVECVWCGAKIRNDNEEDATGVCLKCFYQMLTNHLQSQKQTASGDFVSDR*
Ga0062593_1002765252	3300004114	Soil	MNQETREDFYVVECVWCGAKIREDKAEDTDAVCLKCFYQMLSNHLQSQKRTAYGDFVSDR
Ga0062593_1010753112	3300004114	Soil	MNHNVEREDVYVVQCVWCGAKIREDNQEESSGVCLKCFYQMLTNHLQSQKQTADGDTVSDR*
Ga0062589_1006352401	3300004156	Soil	AMSQRLEQEEVYVVECVWCGAKIRNDDEEDTTGVCLKCFYQILANHLQSQKQTAYGDFVSDR*
Ga0062590_1001772741	3300004157	Soil	SSPYEKGEKMNERPEEKDDAFVIECNWCGTKIRDVNEEDTTGVCLKCFYQMLTNHLQSQKRSAYGDFVSDR*
Ga0062590_1004861203	3300004157	Soil	MSQRLEQEEVYVVECVWCGAKIRNDDEEDTTGVCLKCFYQILANHLQSQKQTAYGDFVSDR*
Ga0062595_1006950182	3300004479	Soil	MNQNVEQEDVYVVECVWCGAKIREVNEEESTGVCLKCFYQMLTNHLQSQKQTAYSESVSDR*
Ga0070680_1011430582	3300005336	Corn Rhizosphere	MNQSSKDQKDVYVVHCVWCGASIREDNEEETTGVCLKCFYQILSDRLQSQKQAQYGEFVSDR*
Ga0070692_111315431	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MSQRPEQEEVYVVECVWCGAKIRNDDEEDTTGVCLKCFYQILAKHLQSQKQTAYGDSVSDR*
Ga0070659_1020658961	3300005366	Corn Rhizosphere	MNQETREDFYVVECVWCGAKIREDKAEDSDAVCLKCFYQMLSNHLQSQKRTAY
Ga0070705_1001350382	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MNQNVEQEDVYVIECVWCGTKIREVNDEESTGVCLKCFYRMLTNTLQSQKQTTYGDSVSDR*
Ga0070705_1009248081	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MSQRLEQEEVYVVECVWCGAKIRNDDEEDTTGVCLKCFYQILASHLQSQKQTAYGDFV
Ga0070694_1006291672	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MNQETREDFYVVECVWCGAKIRDDDAEDTTGVCLKCFYEMLTSHLQSQKQTAYGDFVSDR
Ga0070699_1019957731	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MKQNLEREDVYVVECVWCGAKIREDNDEASTGVCLKCFYQMLTNHLQSQKRTAYGDLVSDR*
Ga0068853_1018721342	3300005539	Corn Rhizosphere	MNQNLEREDVYVVECVWCGAKIREDNQEESTGVCLKCFYQMLTNHLESQKQTAYGDTVSDR*
Ga0070695_1001090741	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	VECVWCGAKIREDNDEASTGVCLKCFYQMLTNHLQSQKRTAYGDFVSDR*
Ga0070695_1004180752	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MSQRLEQDNAYVVECVWCGAKIREDDEENTTAVCLKCFYRMLANHLQSQKQTAAGDFVSDR*
Ga0070696_1004599331	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MKQNLEREDVYVVECVWCGAKIREDNQEESTGVCLKCFYQMLTNHLQSQKQTAYGDTVSDR*
Ga0070696_1018288092	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	LEQDNAYVVECVWCGAKIRDDDEENTTAVCLKCFYRMLANHLQSQKQTAAGDFVSDR*
Ga0070693_1000257853	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MNQNLEREDVYVVECVWCGAKIREDNEEESTGVCLKCFYQMLTNHLQSQKQTAHGESVSDR*
Ga0070693_1001300502	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MKQNLEREDVYVVECVWCGAKIREDNDEASTGVCLKCFYQMLTNHLQSQKRTAYGDFVSDR*
Ga0070665_1022155872	3300005548	Switchgrass Rhizosphere	MKRKNRKNLFSVECNWCGEKIRDSKTETTGVCLKCFYKMLTNHLRNQKKTPSGDFVSDR*
Ga0068855_1021839312	3300005563	Corn Rhizosphere	MSQRLEQEEVYVVECVWCGAKIRNDDEEDTTGVCLKCFYQILANHLQSQKQTAYGDSVSDR*
Ga0068854_1011817972	3300005578	Corn Rhizosphere	MNQNVEREDVYVVECVWCGAKIREDKAEDSDAVCLKCFYQMLSNHLQSQKRTAYGDFVSDR*
Ga0068854_1021421921	3300005578	Corn Rhizosphere	CVWCGAKIREDNQEESTGVCLKCFYQMLTNHLQSQKQTAYGDTVSDR*
Ga0068856_1024308241	3300005614	Corn Rhizosphere	MNQNLEREDVYVVECVWCGAKIRDDNDEESTGVCLKCFYRMLTNTLQSQKQTTYGDSVSDR*
Ga0070702_1015605732	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	ECVWCGAKIREDNQEESTGVCLKCFYQMLTNHLQSQKQTAYGETVSDR*
Ga0068859_1011802201	3300005617	Switchgrass Rhizosphere	KDDAYVIECNWCGAKIRDVKDEDTTGVCLKCFYLMLTNHLQSQKRSAYGDFVSDR*
Ga0068858_1010504613	3300005842	Switchgrass Rhizosphere	MNERPEEKDDVYVIECNWCGAKIRDVNDEDTAGVCLKCFYQMLTNHLQSQKRSAYGDFVSDR*
Ga0068862_1012800211	3300005844	Switchgrass Rhizosphere	MNQETREDFYVVECVWCGAKIREDKAEDSDAVCLKCFYQMLSNHLQSQKRTAYGDFVSDR
Ga0070716_1000221071	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MNQNSTEQRDAHGVHCVWCGASIREDNSAHTREEDTTGVCLKCFYQILSNHLQSQKQSQYGEFVSDR*
Ga0070716_1002296491	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MNQNLNERRNAYVVHCVWCGASIREDNEEETTGVCLKCFYQILSNHLQSQKQSQYGEFVSDR*
Ga0070716_1016182872	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MKQNLEREDVYAVECVWCGAKIREDNDEESTGVCLKCFYQMLTNHLQSQKRTAYGDFVSDR*
Ga0097621_1017916101	3300006237	Miscanthus Rhizosphere	MNQNVEQEDVYVVQCVWCGAKIREDNQEESTGVCLKCFYQMLTNHLQSQKQTAYGDTVSDR*
Ga0079222_104507252	3300006755	Agricultural Soil	MNQNVEREDVYVVECVWCGAKIREDNDEESTGVCLKCFYQMLTNHLQSQKQTVYGDAVSDR*
Ga0079222_116396201	3300006755	Agricultural Soil	MNQNLEQKEVYVVQCAWCGAKIRDDNEEEGTAVCLKCFYQRLTDHLQAQKHTAYGDFVSDR*
Ga0079221_115130562	3300006804	Agricultural Soil	MNHNVKQEDVYVVECVWCGAKIRDDIDEESTGVCLKCFYQMLTNHLQSQKQTTYGEAVSDR*
Ga0075434_1019825652	3300006871	Populus Rhizosphere	MSQRLEQEQVYVVECVWCGAKIRNDDEEDTTGVCLKCFYQILANHLQSQKQTAYGDFVSDR*
Ga0079215_104993182	3300006894	Agricultural Soil	VKERPEEKDDLYIIECNWCGAKIRDINEDDTSGVCLKCFYPMLTNHLQSQKRSAYGDFVSDR*
Ga0075426_100309783	3300006903	Populus Rhizosphere	MNQNVEREEVYVVECVWCGAKIREDNEEESTGVCLKCFYQMLTNHLQSQKRTAYGDFVSDR*
Ga0075436_1013700962	3300006914	Populus Rhizosphere	VVCIWCGVKIRDDKEHDTTGVCLKCFYRILSNHLQSQKKVAYSEFVSDR*
Ga0079216_100144865	3300006918	Agricultural Soil	MKERQEAKDDLYMIECNWCGAKIRDINEDDTSGVCLKCFYQMLTNHLQSQKRSAYGDFVSDR*
Ga0079219_100156834	3300006954	Agricultural Soil	MNQNVEREEVYAVECVWCGAKIREDNDEESTGVCLKCFYQMLTNHLQSQKQTAYSDSVSDR*
Ga0079219_101057212	3300006954	Agricultural Soil	MNQNLEREDVYVVECVWCGAKIREDNAEESTGVCLKCFYQMLTNHLQSQKQTVYGDAVSDR*
Ga0079219_109966191	3300006954	Agricultural Soil	MNQNVEREDVYVVECVWCGAKIREDNDEESTGVCLKCFYQMLTNHLQSQKQTAYGDAVSDR*
Ga0079218_100581475	3300007004	Agricultural Soil	VKERPEEKDDLYIIECNWCGAKIRDINEDDTSGVCLKCFYQMLTNHLQSQKRSAYGDFVSDR*
Ga0079218_103714342	3300007004	Agricultural Soil	MNERPAETVDLYVVECNWCGAKIRDVNEDDTTGVCLKCFYQMLTNHLHSQKRSAYGDFVSDR*
Ga0105240_117039701	3300009093	Corn Rhizosphere	MNQNLEREDVYVVECVWCGAKIREDNEEESTGVCLKCFYRMLANHLQSQKQTAAGDFVSDR*
Ga0105243_118912332	3300009148	Miscanthus Rhizosphere	MSQIPTEREDVYVVECVWCGTKIREDKEEDTDAVCLKCFYQMLSNHLQSQKRSLYGDFVSDR*
Ga0075423_101313344	3300009162	Populus Rhizosphere	MERDSKRRRPYQVVCIWCGAKIRDDKEQDTTGVCLKCFYKILSNHLSTQKRAGYGDFVSDR*
Ga0075423_128035232	3300009162	Populus Rhizosphere	MNQNVEREDVYVVECVWCGAKIREDNQEESTGVCLKCFYQMLTNHLQSQKQTAYGDTVSDR*
Ga0105241_100233213	3300009174	Corn Rhizosphere	MNQNLEREDVYVVECVWCGAKIRKDNEEESTGVCLKCFYQMLTNHLQSQKQTAHGESVSDR*
Ga0105241_100657063	3300009174	Corn Rhizosphere	MSQIPTEREDVYVVECVWCGTKIREDKEEDTDAVCLKCFYQMLSNHLQSQKRSVYGDFVSDR*
Ga0105248_100446033	3300009177	Switchgrass Rhizosphere	MNERPEAKDDAYVIECNWCGAKIRDVKDEDTTGVCLKCFYLMLTNHLQSQKRSAYGDFVSDR*
Ga0105248_120209461	3300009177	Switchgrass Rhizosphere	MNERPEAKDDVYVIECNWCGAKIRDVNDEDTAGVCLKCFYQMLTNHLQSQKRSAYGDFVSDR*
Ga0126384_106645852	3300010046	Tropical Forest Soil	MFPKKGGKMNQSLKEQKDVYVVHCVWCGASIREDNEEETTGVWLKCFYQILSNHLQSQKQAQYGEFVSDR*
Ga0126370_118887171	3300010358	Tropical Forest Soil	MNQSSKKQRDAYVVHCVWCGASIREDNEEETTGVCLKCFYQILSNHLQSQKQVRHGEFVSDR*
Ga0126377_131958131	3300010362	Tropical Forest Soil	MNQSSKEEKDVYVVHCVWCGASIREDNEEETTGVCLKCFYQILSNHLQSQKQ
Ga0134128_123502821	3300010373	Terrestrial Soil	MNQSSIEQRDAYVVHCVWCGASIREDNGAQTREDDMTGVCLKCFYQILSNHLQSQKQSQYGEFVSDR*
Ga0134124_131597192	3300010397	Terrestrial Soil	MKQNLEREDVYAVECVWCGAKIREDNDEASTGVCLKCFYQMLTNHLQSQKRTAYGDFVSDR*
Ga0134127_108442682	3300010399	Terrestrial Soil	MSQRLEQEEVYVVECVWCGAKIRNDDEEHTTGVCLKCFYQILANHLQSQKQTAYGDFVSDR*
Ga0164303_105570282	3300012957	Soil	MKQNLEREDVYVVECVWCGTKIREDNDEASTGVCLKCFYQMLTNHLQSQKRTAYGDFVSD
Ga0164305_103028211	3300012989	Soil	MKQNLEREDVYVVECVWCGTKIREDNDEESTGVCLKCFYQMLTNHLLSQKRTAYGDFVSDR*
Ga0157374_101303802	3300013296	Miscanthus Rhizosphere	MNQNLEREDVYVVECVWCGAKIREDNAEESTGVCLKCFYQMLTNHLQSQKQTAYSESVSDR*
Ga0157374_109244052	3300013296	Miscanthus Rhizosphere	MNERPEAKDDAYAIECNWCGAKIRDVNDEDTTGVCLKCFYQMLTNHLQSQKRSAYGDFVSDR*
Ga0157372_103723053	3300013307	Corn Rhizosphere	MNQNVEREDVYVVECVWCGAKIREDNAEESTGVCLKCFYQMLTNHLQSQKQTAHSDAVSDR*
Ga0157372_111352392	3300013307	Corn Rhizosphere	MSQRLEQDNAYVVECVWCGAKIRDDDEENTTAVCLKCFYRMLANHLQSQKQTAAGDFVSDR*
Ga0132258_106400781	3300015371	Arabidopsis Rhizosphere	MNQNVEREDVYVVECVWCGAKIRDDNQEESTGVCLKCFYQMLTNHLQSQKRTAYGDFVSDR*
Ga0132258_126358982	3300015371	Arabidopsis Rhizosphere	MDKKVKNEELYAVECVWCGANIRHDDEEDVTGVCLKCFYQMLTNHLQSQKQTAYGDFVSDR*
Ga0132257_1004366552	3300015373	Arabidopsis Rhizosphere	MNQNLEREDVYVVECVWCGAKIRDGNQEESTGVCLKCFYQMLTNHLQSQKRTAYGDFVSDR*
Ga0132257_1043719632	3300015373	Arabidopsis Rhizosphere	MSQRLEQEDVYVIECVWCGAKIREDNDKASTGVCLKCFYQMLTAHLQLQKRTAYGDFVSDR*
Ga0187894_100015573	3300019360	Microbial Mat On Rocks	MNQKTKDDLYVVECVWCGAKIREDKEEDTDAICLQCFYQMLSNHLQSQKQTVYGEFVSDR
Ga0196977_100070612	3300020146	Soil	MNHIPRKREDVYVVECVWCGEKIREDKDQDSDAVCLKCFYQMLSNHLQSQKRSVYGDFVSDR
Ga0213902_1030602	3300021290	Soil	VITFRKEETMNQETRADLYVVECVWCGAKIREDNEQDGDAVCLKCFYQMLSNHLQSQKRAAYGDFVSDR
Ga0182009_100891012	3300021445	Soil	MSQRLEQEEVYVVECVWCGAKIRNDDEEDTTGVCLKCFYQILANHLQSQKQTAYGDFVSD
Ga0247695_10002188	3300024179	Soil	MNQSSNEQKNAYVVHCVWCGASIREDNEEETTGVCLKCFYQILSNHLQSQKQVQYGEFVSDR
Ga0207654_100244625	3300025911	Corn Rhizosphere	MNQNLEREDVYVVECVWCGAKIRKDNEEESTGVCLKCFYQMLTNHLQSQKQTAHGESVSD
Ga0207654_101748113	3300025911	Corn Rhizosphere	MSQIPTEREDVYVVECVWCGTKIREDKEEDTDAVCLKCFYQMLSNHLQSQKRTAYGDFVSDR
Ga0207654_113602581	3300025911	Corn Rhizosphere	MNQSSKDQKDVYVVHCVWCGASIREDNEEETTGVCLKCFYQILSDRLQSQKQAQYGEFVSDR
Ga0207652_107699692	3300025921	Corn Rhizosphere	VMMFSERRKMNQSSKNQKDVYVVHCVWCGASIREDNEEETTGVCLKCFYQILSDRLQSQKQAQYGEFVSDR
Ga0207665_115187592	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MKQNLEREDVYAVECVWCGAKIREDNDEESTGVCLKCFYQMLTNHLQSQKRTAYGDFVSD
Ga0207711_100263383	3300025941	Switchgrass Rhizosphere	MNERPEAKDDAYVIECNWCGAKIRDVKDEDTTGVCLKCFYLMLTNHLQSQKRSAYGDFVSDR
Ga0207640_116035591	3300025981	Corn Rhizosphere	MNQNVEQEDVYVVQCVWCGAKIREDNQEESTGVCLKCFYQMLTNHLQSQKQTAYGDTVSD
Ga0207703_108291491	3300026035	Switchgrass Rhizosphere	QSSPHEKGEKMNERPEEKDDVYVIECNWCGAKIRDVNDEDTAGVCLKCFYQMLTNHLQSQKRSAYGDFVSDR
Ga0209215_10102093	3300027266	Forest Soil	MNQETREELYVVECVWCGAKIRDDKEQDTDAVCLKCFYQMLSNHLQSQKRSVYGDFVSDR
Ga0209216_10007658	3300027530	Forest Soil	MNQETREDLYVVECVWCGAKIREDKEQDSDAVCLKCFYQMLSSHLQSQKRSAYGDFVSDR
Ga0209485_11404672	3300027691	Agricultural Soil	MKERQEAKDDLYMIECNWCGAKIRDINEDDTSGVCLKCFYQMLTNHLQSQKRSAYGDFVSDR
Ga0209177_103377811	3300027775	Agricultural Soil	MNQNVEREEVYAVECVWCGAKIREDNDEESTGVCLKCFYQMLTNHLQSQKQTAYSDSVSD
Ga0209074_102462831	3300027787	Agricultural Soil	MNQNLEQKEVYVVQCAWCGAKIRDDNEEEGTAVCLKCFYQRLTDHLQAQKHTAYGDFVSD
Ga0209486_100675945	3300027886	Agricultural Soil	EAKDDLYMIECNWCGAKIRDINEDDTSGVCLKCFYQMLTNHLQSQKRSAYGDFVSDR
Ga0307505_1000013459	3300031455	Soil	MTQEISEDLYAVECVWCGAKIREDKEEDTDAVCLKCFYQMLSNHLQSQKRTAYGDFVSDR
Ga0307408_1000232612	3300031548	Rhizosphere	MNYELAELDDKQQREDVHMVQCVWCGAKIREDKEDTNGVCLKCFYQMLTNHLESQKRSPYGDFVSDR
Ga0310813_117817801	3300031716	Soil	MNQSSKNQKDVYVVHCVWCGASIREDNEEETTGVCLKCFYQILSDRLQSQKQAQYGEFV
Ga0307413_110657972	3300031824	Rhizosphere	EDVHMVQCVWCGAKIREDKEDTNGVCLKCFYQMLTNHLESQKRSPYGDFVSDR
Ga0307413_112875302	3300031824	Rhizosphere	MNYELAEREENYVVQCVWCGTKIREDNDEATTGVCLQCFYQLLTNHLESQKRSAYGDFVSDR
Ga0307414_118792051	3300032004	Rhizosphere	MNYELAEREENYVVQCVWCGTKIREDNDEATTGVCLQCFYQLLTNHLESQKRS
Ga0315910_102525463	3300032144	Soil	MNQEIQEDSYVVECAWCGAKIREDKEQDSDAECLKCFYQMLSNHLQSQKRAAYGDFVSDR
Ga0315912_102137943	3300032157	Soil	MNQEIREDSYVVECAWCGAKIREDKEQDSDAECLKCFYQMLSNHLQSQKRAAYGDFVSDR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F101779

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences