Metagenome Family F101769

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101769
Family Type	Metagenome
Number of Sequences	102
Average Sequence Length	52 residues
Representative Sequence	EAVALVERNGARLAPLVTHEFPLDRAPEALVYAMENPTEVMKVVIRGQ
Number of Associated Samples	91
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.98 %
% of genes near scaffold ends (potentially truncated)	99.02 %
% of genes from short scaffolds (< 2000 bps)	90.20 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.55

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (73.529 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (6.863 % of family members)
Environment Ontology (ENVO)	Unclassified (22.549 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (42.157 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 35.53% β-sheet: 0.00% Coil/Unstructured: 64.47%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.55
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.55
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF00732	GMC_oxred_N	28.43
PF13458	Peripla_BP_6	19.61
PF05199	GMC_oxred_C	4.90
PF07690	MFS_1	2.94
PF02219	MTHFR	0.98
PF01571	GCV_T	0.98
PF00903	Glyoxalase	0.98
PF02780	Transketolase_C	0.98
PF16862	Glyco_hydro_79C	0.98
PF12973	Cupin_7	0.98
PF01643	Acyl-ACP_TE	0.98
PF01315	Ald_Xan_dh_C	0.98
PF00171	Aldedh	0.98
PF07715	Plug	0.98
PF13561	adh_short_C2	0.98
PF08240	ADH_N	0.98
PF12833	HTH_18	0.98
PF07729	FCD	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	33.33
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.98
COG0685	5,10-methylenetetrahydrofolate reductase	Amino acid transport and metabolism [E]	0.98
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.98
COG1802	DNA-binding transcriptional regulator, GntR family	Transcription [K]	0.98
COG2186	DNA-binding transcriptional regulator, FadR family	Transcription [K]	0.98
COG3884	Acyl-ACP thioesterase	Lipid transport and metabolism [I]	0.98
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	73.53 %
Unclassified	root	N/A	26.47 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	73.53 %
Unclassified	root	N/A	26.47 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	73.53 %
Unclassified	root	N/A	26.47 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	62.75 %
Unclassified	root	N/A	26.47 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	61.76 %
Unclassified	root	N/A	26.47 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.47 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	24.51 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	17.65 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.47 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	24.51 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	2.94 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	1.96 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.47 %
Capillimicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae	12.75 %
Conexibacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae	6.86 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	3.92 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	2.94 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1.96 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.96 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → environmental samples	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.47 %
Capillimicrobium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae → Capillimicrobium	12.75 %
Conexibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter	6.86 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	3.92 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.96 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1.96 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.96 %
uncultured Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → environmental samples → uncultured Solirubrobacterales bacterium	0.98 %
Streptacidiphilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptacidiphilus	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.47 %
Capillimicrobium parvum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae → Capillimicrobium → Capillimicrobium parvum	12.75 %
unclassified Conexibacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → unclassified Conexibacter	6.86 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	3.92 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1.96 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.96 %
unclassified Streptomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces	0.98 %
Streptacidiphilus jeojiense	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptacidiphilus → Streptacidiphilus jeojiense	0.98 %
uncultured Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → environmental samples → uncultured Solirubrobacterales bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.47 %
Capillimicrobium parvum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae → Capillimicrobium → Capillimicrobium parvum	12.75 %
Conexibacter sp. DBS9H8	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → unclassified Conexibacter → Conexibacter sp. DBS9H8	6.86 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	3.92 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1.96 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.96 %
Streptomyces sp. e14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. e14	0.98 %
Streptacidiphilus jeojiense	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptacidiphilus → Streptacidiphilus jeojiense	0.98 %
uncultured Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → environmental samples → uncultured Solirubrobacterales bacterium	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2140918024\|NODE_517085_length_3683_cov_4.915558	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. e14	3733	Open in IMG/M
2170459017\|G14TP7Y02GSKIX	All Organisms → cellular organisms → Bacteria → Terrabacteria group	686	Open in IMG/M
3300000887\|AL16A1W_10342566	Not Available	632	Open in IMG/M
3300001535\|A3PFW1_10349621	Not Available	1645	Open in IMG/M
3300001544\|JGI20163J15578_10355015	All Organisms → cellular organisms → Bacteria	940	Open in IMG/M
3300001686\|C688J18823_10108661	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1927	Open in IMG/M
3300001686\|C688J18823_10373358	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae → Capillimicrobium → Capillimicrobium parvum	926	Open in IMG/M
3300001867\|JGI12627J18819_10180866	Not Available	854	Open in IMG/M
3300002073\|JGI24745J21846_1009153	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1120	Open in IMG/M
3300002568\|C688J35102_117811094	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	507	Open in IMG/M
3300002568\|C688J35102_118315492	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	548	Open in IMG/M
3300002568\|C688J35102_120338028	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	999	Open in IMG/M
3300003369\|JGI24140J50213_10100631	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	959	Open in IMG/M
3300004153\|Ga0063455_100716916	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
3300005179\|Ga0066684_11082327	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	513	Open in IMG/M
3300005187\|Ga0066675_11252551	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	549	Open in IMG/M
3300005329\|Ga0070683_102188066	Not Available	531	Open in IMG/M
3300005330\|Ga0070690_100555433	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	866	Open in IMG/M
3300005340\|Ga0070689_100272524	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1401	Open in IMG/M
3300005434\|Ga0070709_10075749	All Organisms → cellular organisms → Bacteria	2183	Open in IMG/M
3300005445\|Ga0070708_101192749	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	712	Open in IMG/M
3300005529\|Ga0070741_10669249	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	919	Open in IMG/M
3300005539\|Ga0068853_100290607	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1509	Open in IMG/M
3300005618\|Ga0068864_102418750	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	531	Open in IMG/M
3300005834\|Ga0068851_10066368	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1859	Open in IMG/M
3300006028\|Ga0070717_10767355	All Organisms → cellular organisms → Bacteria	877	Open in IMG/M
3300006173\|Ga0070716_100135112	All Organisms → cellular organisms → Bacteria	1565	Open in IMG/M
3300006358\|Ga0068871_100225529	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1625	Open in IMG/M
3300006638\|Ga0075522_10322195	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	745	Open in IMG/M
3300006954\|Ga0079219_12467549	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300009098\|Ga0105245_10708862	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1040	Open in IMG/M
3300009174\|Ga0105241_10152950	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1889	Open in IMG/M
3300009177\|Ga0105248_10419881	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae → Capillimicrobium → Capillimicrobium parvum	1506	Open in IMG/M
3300009553\|Ga0105249_11841049	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	678	Open in IMG/M
3300009553\|Ga0105249_12020960	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae → Capillimicrobium → Capillimicrobium parvum	649	Open in IMG/M
3300010045\|Ga0126311_11251620	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	615	Open in IMG/M
3300010373\|Ga0134128_11128281	All Organisms → cellular organisms → Bacteria	865	Open in IMG/M
3300010399\|Ga0134127_12429606	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	604	Open in IMG/M
3300011987\|Ga0120164_1042168	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	675	Open in IMG/M
3300012003\|Ga0120163_1045277	Not Available	1093	Open in IMG/M
3300012206\|Ga0137380_10027456	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5243	Open in IMG/M
3300012212\|Ga0150985_102625089	Not Available	812	Open in IMG/M
3300012212\|Ga0150985_107232039	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae → Capillimicrobium → Capillimicrobium parvum	699	Open in IMG/M
3300012212\|Ga0150985_107659631	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1787	Open in IMG/M
3300012212\|Ga0150985_109982960	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae → Capillimicrobium → Capillimicrobium parvum	513	Open in IMG/M
3300012212\|Ga0150985_121729329	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae → Capillimicrobium → Capillimicrobium parvum	531	Open in IMG/M
3300012212\|Ga0150985_123048627	Not Available	2190	Open in IMG/M
3300012915\|Ga0157302_10428620	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	553	Open in IMG/M
3300012960\|Ga0164301_10800831	Not Available	721	Open in IMG/M
3300012989\|Ga0164305_11173697	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300013105\|Ga0157369_10863661	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	928	Open in IMG/M
3300013297\|Ga0157378_11628333	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae → Capillimicrobium → Capillimicrobium parvum	692	Open in IMG/M
3300014325\|Ga0163163_10149529	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2380	Open in IMG/M
3300015371\|Ga0132258_12328102	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae → Capillimicrobium → Capillimicrobium parvum	1343	Open in IMG/M
3300015374\|Ga0132255_103000540	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	721	Open in IMG/M
3300016319\|Ga0182033_11551891	Not Available	598	Open in IMG/M
3300016371\|Ga0182034_11029472	Not Available	712	Open in IMG/M
3300016404\|Ga0182037_11660770	Not Available	569	Open in IMG/M
3300017939\|Ga0187775_10465870	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	535	Open in IMG/M
3300017961\|Ga0187778_10689909	Not Available	690	Open in IMG/M
3300017966\|Ga0187776_10144513	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → unclassified Conexibacter → Conexibacter sp. DBS9H8	1457	Open in IMG/M
3300021362\|Ga0213882_10163599	Not Available	914	Open in IMG/M
3300021374\|Ga0213881_10159309	Not Available	990	Open in IMG/M
3300021402\|Ga0210385_10207439	Not Available	1427	Open in IMG/M
3300025703\|Ga0208357_1090761	All Organisms → cellular organisms → Bacteria	919	Open in IMG/M
3300025906\|Ga0207699_10241728	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptacidiphilus → Streptacidiphilus jeojiense	1240	Open in IMG/M
3300025906\|Ga0207699_11482056	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	502	Open in IMG/M
3300025914\|Ga0207671_10163263	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae → Capillimicrobium → Capillimicrobium parvum	1726	Open in IMG/M
3300025915\|Ga0207693_11040127	Not Available	624	Open in IMG/M
3300025927\|Ga0207687_10351931	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae → Capillimicrobium → Capillimicrobium parvum	1200	Open in IMG/M
3300025929\|Ga0207664_11639047	Not Available	565	Open in IMG/M
3300025960\|Ga0207651_10170990	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1714	Open in IMG/M
3300026023\|Ga0207677_11741398	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae → Capillimicrobium → Capillimicrobium parvum	578	Open in IMG/M
3300026078\|Ga0207702_11010346	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae → Capillimicrobium → Capillimicrobium parvum	825	Open in IMG/M
3300027696\|Ga0208696_1043287	Not Available	1597	Open in IMG/M
3300027904\|Ga0209737_11142079	Not Available	731	Open in IMG/M
3300028589\|Ga0247818_10254845	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae → Capillimicrobium → Capillimicrobium parvum	1160	Open in IMG/M
3300028608\|Ga0247819_10488032	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	726	Open in IMG/M
3300028789\|Ga0302232_10432066	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	647	Open in IMG/M
3300028808\|Ga0302228_10216906	Not Available	868	Open in IMG/M
3300028881\|Ga0307277_10480213	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	557	Open in IMG/M
3300029951\|Ga0311371_10824045	Not Available	1138	Open in IMG/M
3300030007\|Ga0311338_10221685	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2155	Open in IMG/M
3300030494\|Ga0310037_10165055	Not Available	998	Open in IMG/M
3300030503\|Ga0311370_10210163	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	2607	Open in IMG/M
3300030739\|Ga0302311_10462486	Not Available	880	Open in IMG/M
3300031250\|Ga0265331_10164724	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1004	Open in IMG/M
3300031546\|Ga0318538_10360063	Not Available	786	Open in IMG/M
3300031549\|Ga0318571_10471369	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	501	Open in IMG/M
3300031748\|Ga0318492_10215067	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → unclassified Conexibacter → Conexibacter sp. DBS9H8	987	Open in IMG/M
3300031778\|Ga0318498_10138883	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → unclassified Conexibacter → Conexibacter sp. DBS9H8	1105	Open in IMG/M
3300031805\|Ga0318497_10045552	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → unclassified Conexibacter → Conexibacter sp. DBS9H8	2245	Open in IMG/M
3300031890\|Ga0306925_11030432	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → unclassified Conexibacter → Conexibacter sp. DBS9H8	837	Open in IMG/M
3300031996\|Ga0308176_12055584	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → environmental samples → uncultured Solirubrobacterales bacterium	610	Open in IMG/M
3300032055\|Ga0318575_10114932	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → unclassified Conexibacter → Conexibacter sp. DBS9H8	1316	Open in IMG/M
3300032261\|Ga0306920_101337937	Not Available	1029	Open in IMG/M
3300032515\|Ga0348332_11587862	All Organisms → cellular organisms → Bacteria	750	Open in IMG/M
3300032783\|Ga0335079_11425038	All Organisms → cellular organisms → Bacteria	687	Open in IMG/M
3300032828\|Ga0335080_10167753	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2426	Open in IMG/M
3300032898\|Ga0335072_11111726	Not Available	712	Open in IMG/M
3300033134\|Ga0335073_10230356	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → unclassified Conexibacter → Conexibacter sp. DBS9H8	2274	Open in IMG/M
3300033134\|Ga0335073_11483630	Not Available	656	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	70.59%
Host-Associated	Host-Associated	28.43%
Engineered	Engineered	0.98%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	70.59%
Plants	Host-Associated → Plants	26.47%
Arthropoda	Host-Associated → Arthropoda	1.96%
Solid Waste	Engineered → Solid Waste	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	61.76%
Rhizoplane	Host-Associated → Plants → Rhizoplane	13.73%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.78%
Peat	Environmental → Terrestrial → Peat	5.88%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	1.96%
Digestive System	Host-Associated → Arthropoda → Digestive System	1.96%
Roots	Host-Associated → Plants → Roots	1.96%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.98%
Grass	Engineered → Solid Waste → Grass	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	36.27%
Loam	Environmental → Terrestrial → Soil → Loam	17.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.82%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	7.84%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	5.88%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.88%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	1.96%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	1.96%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.96%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.96%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.98%
Composting	Engineered → Solid Waste → Grass → Composting	0.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	11.76%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	10.78%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.82%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	7.84%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	7.84%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	5.88%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	5.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.88%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.94%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.96%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	1.96%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	1.96%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.96%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.98%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.98%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.86%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.86%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	5.88%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	5.88%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	5.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.90%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.92%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	3.92%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.94%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.94%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.96%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.96%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.96%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	1.96%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	1.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.96%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.98%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.98%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.98%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.98%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.98%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918024	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog_all	Environmental	Open in IMG/M
2170459017	Litter degradation ZMR4	Engineered	Open in IMG/M
3300000887	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A3-65cm-16A)- 1 week illumina	Environmental	Open in IMG/M
3300001535	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A3-PF-15A)- 1 week illumina	Environmental	Open in IMG/M
3300001544	Cubitermes ugandensis P1 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P1	Host-Associated	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002073	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4	Host-Associated	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003369	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 002-22A	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006638	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011987	Permafrost microbial communities from Nunavut, Canada - A20_80cm_0M	Environmental	Open in IMG/M
3300012003	Permafrost microbial communities from Nunavut, Canada - A20_80cm_0.25M	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017939	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MG	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300021362	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R09	Environmental	Open in IMG/M
3300021374	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R08	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300025703	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F52-2 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027696	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG (SPAdes)	Environmental	Open in IMG/M
3300027904	Cubitermes ugandensis P3 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P3 (SPAdes)	Host-Associated	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028608	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Xylose_Day6	Environmental	Open in IMG/M
3300028789	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_3	Environmental	Open in IMG/M
3300028808	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_2	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030739	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_3	Environmental	Open in IMG/M
3300031250	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG	Host-Associated	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
B_all_v_00059500	2140918024	Soil	DLTERNAGRLAQLVSHEFPLTEAPEALRFAMEHPSDVMKVVIRGAERS
4ZMR_00656500	2170459017	Switchgrass, Maize And Mischanthus Litter	LSRLISHRFSLEKAPEALRFAMDNPTEVMKVIIGGA
AL16A1W_103425662	3300000887	Permafrost	LLGVSCCSGEEFKQAVRVVERNSSTVARMISHEFPLERAPEALDFAMNNPHEVMKMVIRDD*
A3PFW1_103496211	3300001535	Permafrost	VRVVERNSSTVARMISHEFPLERAPEALDFAMNNPHEVMKMVIRDD*
JGI20163J15578_103550152	3300001544	Termite Gut	ERNAALLERLISHRFPLDRTPEALRFAMEHPSEVMKVVIGGG*
C688J18823_101086613	3300001686	Soil	FTEKELDVLGTSVCTAAEFAEAVALVERNGDRLAPLVTQQFAFDRAPEALVYAMENPTETMKVVIRGPAAHAPL*
C688J18823_103733582	3300001686	Soil	TSVCTAAEFAEAVGIVERNGDRLAALVSHEFAFDRAPDALGFAMENPTDVMKVVIRGA*
JGI12627J18819_101808662	3300001867	Forest Soil	GVSCCQAGEFAEAVAVVERHADAMARLVSHEFPLTQAPEALRFAMSNPTEVMKVVIRNG*
JGI24745J21846_10091531	3300002073	Corn, Switchgrass And Miscanthus Rhizosphere	GTSVCNRDEFAEAVALVERNGARLAPLVTHEFPLDRAPEALVYAMENPTEVMKVVIRGQ*
C688J35102_1178110941	3300002568	Soil	ELDVLGTSVCTADEFAAAVGIVERNAELLAALVTHEFPLERAPAALSFAMENAADVMKVVIRAG*
C688J35102_1183154922	3300002568	Soil	FVEDNEALLEPLITRRFSLEQAPEALAYAMENPAEVMKVVITSN*
C688J35102_1203380281	3300002568	Soil	EAVGIVERNGDRLAALVTHEFAFDRAPEALVFAMENPTEVMKAVIRGA*
JGI24140J50213_101006311	3300003369	Arctic Peat Soil	GGGDFAEAVAVVEANPGLLARLISHQFPLERAPEALRFAMSNPTEVMKVVILGEGL*
Ga0063455_1007169161	3300004153	Soil	AAEFAEAVAIVERNGDRLAPLVTHQFAFDEAPDALVFAMGSPTEAMKVVIRGT*
Ga0066684_110823272	3300005179	Soil	AEAVRVVERNAGGLARLISHQFPLEQAPEALQFAMSNPHEVMKVVIRDE*
Ga0066675_112525511	3300005187	Soil	AEFAEAVRVVERNAGALARLISHQFPLEQAPEALQFAMSNPHEVMKVVIRDE*
Ga0070683_1021880662	3300005329	Corn Rhizosphere	VGVVERNADALARLVSHEFALEQAPAAIRFAMSNPTEVMKVVIRGE*
Ga0070690_1005554332	3300005330	Switchgrass Rhizosphere	DLVERNADRLAPLVSHEFALAEAPDALRFAMERPADVMKVVIRGDRA*
Ga0070689_1002725242	3300005340	Switchgrass Rhizosphere	LVERNGARLAPLVTHEFPLDRAPEALVYAMENPTEVMKVVIRGQ*
Ga0070709_100757494	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	DAVGVVERNGPVLARLVSHEFGLPEAPEAIHFAMTSPTEVMKVVIRNHAGA*
Ga0070708_1011927491	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	DVLGTSVCNRDEFAEAVALVERNAARLAPLVTHEFPLDRAPEALVYAMENPTEVMKVVIRGQ*
Ga0070741_106692491	3300005529	Surface Soil	VERNVEVLSRLISHRFALERAPEALRFAMENPTEVMKVIIGGA*
Ga0068853_1002906071	3300005539	Corn Rhizosphere	DEFAAAVALVERNRDRLAPLVTHEFPLDRAPDALVYAMENPTEVMKVVIRGQ*
Ga0068864_1024187501	3300005618	Switchgrass Rhizosphere	ELDVLGTSVCNRDEFAEAVALVERNGARLAPLVTHEFPLDRAPEALVYAMENPTEVMKVVIRGQ*
Ga0068851_100663681	3300005834	Corn Rhizosphere	VEFAEAVALVERNGGRLAPLVTHEFPLDRAPEALVYAMENPTEVMKVVIRGR*
Ga0070717_107673551	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	ERNVDVLSRLISHRFALDEAPEAFWFAMENPTEVMKVIIGGA*
Ga0070716_1001351121	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	FAGAVEVVERNGPALARMISHQFPLAEAPEALRFAMNNPSDVMKVVIRGD*
Ga0068871_1002255291	3300006358	Miscanthus Rhizosphere	ELDVLGTSICNRDEFAAAVALVERHRDRLAPLVTHEFPLDRAPEALVYAMENPTEVMKVVIRGQ*
Ga0075522_103221951	3300006638	Arctic Peat Soil	FLGVSCCGGGDFAEAVAVVEANPGLLARLISHQFPLERAPEALRFAMSNPTEVMKVVILGEGL*
Ga0079219_124675492	3300006954	Agricultural Soil	CCCGTGDFAEAVAVVERNGPALARMISHQFPLAEAPQALQFAMDNPSDVMKVVIRGE*
Ga0105245_107088622	3300009098	Miscanthus Rhizosphere	LDVLGTSVCNRDEFAAAVALVERNRDRLAPLVTHEFPLDRAPDALVYAMENPTDVMKVVIRA*
Ga0105241_101529503	3300009174	Corn Rhizosphere	EVALRVGSFTEKERDVRGTSVCNRDAFAEAVALVERNGARLAPLVTHEFPLDRAPEALVYAMENPTEVMKVVIRGQ*
Ga0105248_104198811	3300009177	Switchgrass Rhizosphere	AEAVALVERNGARLAPLVTHEFPLDRAPEALVYAMENPTEVMKVVIRDR*
Ga0105249_118410492	3300009553	Switchgrass Rhizosphere	GTSVCNRDEFAEAVALVERNAARLAPLVTHEFPLDRAPEALVYAMENPTEVMKVVIRGQ*
Ga0105249_120209601	3300009553	Switchgrass Rhizosphere	AVALVERNGDRLAPLVTHEFAFDRAPEALVYAMENPTETMKVVIRGPAAHAPL*
Ga0126311_112516202	3300010045	Serpentine Soil	RFVEQNEALLEPMITRRFSLEQAPEALAYAMENPAEVMKVVITRN*
Ga0134128_111282812	3300010373	Terrestrial Soil	CGAAEFGQAVAVVERNVDVLSRLISHRFALEKAPEALRFAMENPTEVMKVIIGGA*
Ga0134127_124296062	3300010399	Terrestrial Soil	DEFAAAVALVERHRDRLAPLVTHEFPLDRAPEALVFAMENPTDVMKVVIRGA*
Ga0120164_10421681	3300011987	Permafrost	CCSGEEFKQAVRVVERNSSTVARMISHEFPLERAPEALDFAMNNPHEVMKMVIRDD*
Ga0120163_10452772	3300012003	Permafrost	ERNSSTVARMISHEFPLERAPEALDFAMNNPHEVMKMVIRDD*
Ga0137380_100274567	3300012206	Vadose Zone Soil	AVVERSGDPLARLISHEFPLAEAPEAIRFAMSNPAEVMKVVIRSA*
Ga0150985_1026250891	3300012212	Avena Fatua Rhizosphere	LVERNAARLAPLVSHEFALAEAPDALRFAMEHPTDVMKVVVRTDRA*
Ga0150985_1072320391	3300012212	Avena Fatua Rhizosphere	AVAIVERNGDRLAPLVTHEFAFDRAPEALTFAMEHPTEVMKVVIRGPAAHAPL*
Ga0150985_1076596311	3300012212	Avena Fatua Rhizosphere	SVCTAEEFAAAVAIVERNGDRLAPLVTHEFDFDRAPEALAFAMEHPTDVMKAVIRGAA*
Ga0150985_1099829601	3300012212	Avena Fatua Rhizosphere	EAVAIVERNADRLAPLVTHEFPLERAPEALVFAMENPIEVMKVVILGA*
Ga0150985_1217293292	3300012212	Avena Fatua Rhizosphere	AAVALVERNRDRLAPLVTHEFPLERAPDGLVYAMENPTAVMKVVIRGA*
Ga0150985_1230486274	3300012212	Avena Fatua Rhizosphere	RNADRLAPLVSHEFTLADAPDALRFAMEHPADVMKVVIRNDRA*
Ga0157302_104286202	3300012915	Soil	LDVLGTSICNRDEFAAAVALVERHRDRLAPLVTHEFPLDRAPEALVFAMENPTDVMKVVIRGA*
Ga0164301_108008312	3300012960	Soil	VDLVERNADRLAPLVSHEFDLAEAPDAVRFAMERPADVMKVVIRGDRT*
Ga0164305_111736972	3300012989	Soil	GAVEVVERNGPALARMISHQFPLAEAPVALRFAMDNPSDVMKVVIRGD*
Ga0157369_108636611	3300013105	Corn Rhizosphere	ICNRDEFAAAVALVERHRDRLAPLVTHEFPLDRAPEALVFAMENPTDVMKVVIRGA*
Ga0157378_116283331	3300013297	Miscanthus Rhizosphere	ASTEKELDVLGTSVCTAPEFAQAVGIVERNGDRLAALVTHAFGFDRAPEALVFAMENATDVMKVVIRGA*
Ga0163163_101495293	3300014325	Switchgrass Rhizosphere	EAVALVERNGARLAPLVTHEFPLDRAPEALVYAMENPTEVMKVVIRGQ*
Ga0132258_123281021	3300015371	Arabidopsis Rhizosphere	NRDEFAEAVALVERNGARLAPLVTHEFPLDRAPEALVYAMENAGEVMKVVIRGQ*
Ga0132255_1030005401	3300015374	Arabidopsis Rhizosphere	TSVCNRDEFAEAVALVERNGARLAPLVTHEFPLDRAPEALVYAMEHPTEVMKVVIRGR*
Ga0182033_115518911	3300016319	Soil	LLGVSCCNASEFGQAVAVVERNVELLAPLISHRFGLDQAPEALRFAMDNPTEVMKVVIGG
Ga0182034_110294721	3300016371	Soil	AVAVVERNAELLEGLISHRFGLEQAPEALRFAMDNPTEVMKVVIGG
Ga0182037_116607701	3300016404	Soil	QAVAVVERNVELLAPLISHRFGLDQAPEALRFAMDNPTEVMKVVIGG
Ga0187775_104658702	3300017939	Tropical Peatland	AGEFAEAVAVVERHAAAVARLVSHEFPLAQAPEALRFAMSNPTEVMKVVIRNG
Ga0187778_106899092	3300017961	Tropical Peatland	FSEAVAVVERNTPLLAPLISHRFGLEQAPEAIRFAIEHPTDVMKVVIGGE
Ga0187776_101445132	3300017966	Tropical Peatland	FGEAVAVVERNTPLLAPLISHRFALEHAPDAIRFATENPTDVMKVVIGDE
Ga0213882_101635991	3300021362	Exposed Rock	DEFAEAVGVVERNADVLERLISHEFSLARAPDAMRFAMSNPNEVMKVVIRGG
Ga0213881_101593092	3300021374	Exposed Rock	VERNDALIARLISHQFPLEQAPQALEFAMGNPTEVMKVVIRGDQ
Ga0210385_102074391	3300021402	Soil	DFAEAVGVVERNAEALKRLISHEFVLDQAPEAMRFAMSNPTEVMKVVIRDE
Ga0208357_10907611	3300025703	Arctic Peat Soil	TRDDFAEAVAVVERNPEAVGRLVSHEFALTQAPEALSFAMSNPTEVMKVVIRDA
Ga0207699_102417283	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	DAVGVVERNGPVLARLVSHEFGLPEAPEAIHFAMTSPTEVMKVVIRNHAGA
Ga0207699_114820561	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	SEDFAEAVGVVERNADALGRLVSHEFGLEQAPDAIRFAMSNPTEVMKVVIRDE
Ga0207671_101632631	3300025914	Corn Rhizosphere	AEAVALVERNAARLAPLVTHEFPLDRAPEALVYAMENPTEVMKVVIRGQ
Ga0207693_110401271	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	NADALARLVSHQFALDEAPEAMRFAMSNPTEVMKVVIRDE
Ga0207687_103519311	3300025927	Miscanthus Rhizosphere	LDVLGTSVCNRDEFAAAVALVERNRDRLAPLVTHEFPLDRAPDALVYAMENPTDVMKVVIRA
Ga0207664_116390471	3300025929	Agricultural Soil	RNADALARLVSHQFALDEAPEAMRFAMSNPTEVMKVVIRDE
Ga0207651_101709901	3300025960	Switchgrass Rhizosphere	TSVCNRDEFAEAVALVERNGARLAPLVTHEFPLDRAPEALVYAMENPTEVMKVVIRGQ
Ga0207677_117413981	3300026023	Miscanthus Rhizosphere	VALVERNGARLAPLVTHEFPLDRAPEALVYAMENPTEVMKVVIRGQ
Ga0207702_110103462	3300026078	Corn Rhizosphere	LVERNGARLAPLVTHEFPLDRAPEALVYAMENPTEVMKVVIRDR
Ga0208696_10432872	3300027696	Peatlands Soil	LGVSCCGADEFGEAVAVVERNTPLLAPLISHRFALDQAPDAMRFAIENPTDVMKVVIGDE
Ga0209737_111420792	3300027904	Termite Gut	VERNAVLLERLISHRFPLDRTPEALRFAMEHPSEVMKVVIGGG
Ga0247818_102548451	3300028589	Soil	RRAVERNGARLAPLVTHEFPLDRAPEALVYAMENPTEVMKVVIRGQ
Ga0247819_104880321	3300028608	Soil	ELDVLGTSVCNRDEFAEAVALVERNGTRLAPLVTHEFPLDRAPEALVYAMENPTEVMKVVIRGQ
Ga0302232_104320662	3300028789	Palsa	EFAQAVDLAERHDALLARLVSQEFSLAQAPDALRFAIGHPTEVMKVVIRT
Ga0302228_102169061	3300028808	Palsa	VALAERRAPALERLVSHEFPLAQAPEALRFAIDNPTQVMKVVILPDR
Ga0307277_104802131	3300028881	Soil	FVEQNEALLEPLITRRFSLERAPEALAYAMANPAEVMKVVIIRN
Ga0311371_108240452	3300029951	Palsa	AVGVVERNSDALARLVSHEFTLAQAPEALRFAMSNPTEVMKVVIRGE
Ga0311338_102216851	3300030007	Palsa	ARLVSHEFTLERAPEAMRFAIDNPTEVMKVVILGE
Ga0310037_101650552	3300030494	Peatlands Soil	TGEYDEAVGLVERNGELMARMVSHEFRLEQAPEAIRFAMSNPTKVMKVVIRGE
Ga0311370_102101631	3300030503	Palsa	LAERRAPALERLVSHEFPLAQAPEALRFAIDNPTQVMKVVILVDR
Ga0302311_104624861	3300030739	Palsa	CNQAALAGLVSHEFPLERAPEAMRFAIDNPTEVMKVVILGE
Ga0265331_101647241	3300031250	Rhizosphere	ERNADRLARLVSHEFALSDAPEALEFAMHNPRDVMKVVIRNP
Ga0318538_103600632	3300031546	Soil	ADEFGEAVAVVERNAGLLERLISHRFGLERAPEALRFAMDNPTEVMKVVIGGA
Ga0318571_104713691	3300031549	Soil	EFAEAVAVVERNSAPLARLISHQFRLDEAPAAIRFAMSNPADVMKVVIRGA
Ga0318492_102150671	3300031748	Soil	LGVSCCNADEFGEAVAVVERNAGLLERLVSHRFDLELAPEALRFAMDNPTEVMKVVIGGA
Ga0318498_101388832	3300031778	Soil	VAVVERNVELLAPLISHRFGLDQAPEALRFAMDNPTEVMKVVIGG
Ga0318497_100455521	3300031805	Soil	PDLHGVSCCNADEFGEAVAVVERNAGLLERLVSHRFDLELAPEALRFAMDNPTEVMKVVIGGA
Ga0306925_110304321	3300031890	Soil	RNAELLEGLISHRFGLEQAPEALRFAMDNPTEVMKVVIGG
Ga0308176_120555842	3300031996	Soil	DFADAVSLVERNAALLDGMVSHRFPLEGTPEALVYAMQNPTEVMKVVISPGGE
Ga0318575_101149321	3300032055	Soil	CNASEVGQAVAVVERNVELLAPLISHRFGLDQAPEALRFAMDNPTEVMKVVIGG
Ga0306920_1013379372	3300032261	Soil	GVSCCGAEEFGEAVAVVERNTPLIAPLISHRFALDQAPEAIRFAIENPTDVMKVVIGD
Ga0348332_115878622	3300032515	Plant Litter	GQAEFGDAVAVVQRQSASLARLVSHEFPLSEAPAAIRYAIANPAEVMKVMIRTS
Ga0335079_114250383	3300032783	Soil	RNGPALARLVSHEFGLADAPEAIRFAMTSPTEVMKVVIRNHAGA
Ga0335080_101677533	3300032828	Soil	VLGVSCCGAGEFGEAVAVVERNPQLLAPLISHRFALGDAPEAIRFAIENPTDVMKVVIGD
Ga0335072_111117262	3300032898	Soil	AVAVVERNAPALARLVSHEFGLDRAPEAIRFAIDNPAEVMKVMIGG
Ga0335073_102303562	3300033134	Soil	EFGEAVAVVERNTPLLAPLISHRFGLDQAPEAIRFAIENPTDVMKVVIGDSV
Ga0335073_114836302	3300033134	Soil	VERHADLVARLVSHEFPLERAPEAIGFAIEHPAEVMKVVIRVG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F101769

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences