Metagenome / Metatranscriptome Family F101715

Basic Information
Family ID	F101715
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	63 residues
Representative Sequence	MRDFVEYLRAYRAYVSANLGWGKALRFALVWLAGMFAPLASKTLLELPNWVAVTWMIVWA
Number of Associated Samples	88
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	54.90 %
% of genes near scaffold ends (potentially truncated)	88.24 %
% of genes from short scaffolds (< 2000 bps)	90.20 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.39

Most Common Taxonomy
Group	Bacteria (58.824 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (13.725 % of family members)
Environment Ontology (ENVO)	Unclassified (22.549 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.000 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 64.77% β-sheet: 0.00% Coil/Unstructured: 35.23%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF06441	EHN	3.92
PF01042	Ribonuc_L-PSP	2.94
PF03401	TctC	1.96
PF02775	TPP_enzyme_C	1.96
PF00027	cNMP_binding	1.96
PF02776	TPP_enzyme_N	1.96
PF07883	Cupin_2	1.96
PF16694	Cytochrome_P460	1.96
PF12244	DUF3606	0.98
PF12833	HTH_18	0.98
PF14247	DUF4344	0.98
PF12697	Abhydrolase_6	0.98
PF00999	Na_H_Exchanger	0.98
PF02310	B12-binding	0.98
PF03358	FMN_red	0.98
PF13185	GAF_2	0.98
PF03884	YacG	0.98
PF00005	ABC_tran	0.98
PF09335	SNARE_assoc	0.98
PF14067	LssY_C	0.98
PF06411	HdeA	0.98
PF04392	ABC_sub_bind	0.98
PF02627	CMD	0.98
PF13470	PIN_3	0.98
PF00072	Response_reg	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0596	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold	Coenzyme transport and metabolism [H]	3.92
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	2.94
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	1.96
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	0.98
COG0398	Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 family	Function unknown [S]	0.98
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	0.98
COG0586	Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family	Cell wall/membrane/envelope biogenesis [M]	0.98
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	0.98
COG1238	Uncharacterized membrane protein YqaA, VTT domain	Function unknown [S]	0.98
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	0.98
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.98
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	0.98
COG3024	Endogenous inhibitor of DNA gyrase, YacG/DUF329 family	Replication, recombination and repair [L]	0.98
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	0.98
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	0.98

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	58.82 %
Unclassified	root	N/A	41.18 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	58.82 %
Unclassified	root	N/A	41.18 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	58.82 %
Unclassified	root	N/A	41.18 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.18 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	39.22 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	4.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.18 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	30.39 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	3.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.18 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	25.49 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.92 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.18 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	14.71 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.92 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.96 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.18 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	12.75 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.92 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.96 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.18 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.92 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	2.94 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.96 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.98 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.98 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.18 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.92 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	2.94 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.96 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	0.98 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.98 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.98 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2032320005\|FACEOR_FY84VJD01EMU4W	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	513	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_10669794	Not Available	609	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_13830654	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	779	Open in IMG/M
3300001433\|JGI24036J14985_101734	Not Available	887	Open in IMG/M
3300001915\|JGI24741J21665_1056846	Not Available	577	Open in IMG/M
3300004156\|Ga0062589_101296115	All Organisms → cellular organisms → Bacteria → Proteobacteria	704	Open in IMG/M
3300004157\|Ga0062590_101333924	Not Available	709	Open in IMG/M
3300005328\|Ga0070676_10010247	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5083	Open in IMG/M
3300005332\|Ga0066388_102679183	Not Available	909	Open in IMG/M
3300005332\|Ga0066388_102971759	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	866	Open in IMG/M
3300005332\|Ga0066388_108462072	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	512	Open in IMG/M
3300005338\|Ga0068868_102325830	Not Available	511	Open in IMG/M
3300005435\|Ga0070714_100243323	Not Available	1661	Open in IMG/M
3300005556\|Ga0066707_10130960	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1573	Open in IMG/M
3300005576\|Ga0066708_11033109	Not Available	510	Open in IMG/M
3300005615\|Ga0070702_101157244	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	621	Open in IMG/M
3300005764\|Ga0066903_103387775	All Organisms → cellular organisms → Bacteria	860	Open in IMG/M
3300005764\|Ga0066903_108499053	Not Available	523	Open in IMG/M
3300005842\|Ga0068858_102481018	All Organisms → cellular organisms → Bacteria → Proteobacteria	512	Open in IMG/M
3300005842\|Ga0068858_102532297	Not Available	507	Open in IMG/M
3300006173\|Ga0070716_101184351	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300006953\|Ga0074063_10095056	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	510	Open in IMG/M
3300007788\|Ga0099795_10661410	Not Available	500	Open in IMG/M
3300009148\|Ga0105243_10006356	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	9125	Open in IMG/M
3300010037\|Ga0126304_10675809	Not Available	697	Open in IMG/M
3300010046\|Ga0126384_12142144	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300010159\|Ga0099796_10371915	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	621	Open in IMG/M
3300010376\|Ga0126381_102225007	Not Available	788	Open in IMG/M
3300010376\|Ga0126381_105015475	Not Available	508	Open in IMG/M
3300011271\|Ga0137393_10838760	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	785	Open in IMG/M
3300012473\|Ga0157340_1021027	Not Available	550	Open in IMG/M
3300012494\|Ga0157341_1006383	All Organisms → cellular organisms → Bacteria	912	Open in IMG/M
3300012500\|Ga0157314_1027198	Not Available	621	Open in IMG/M
3300012892\|Ga0157294_10261932	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300012907\|Ga0157283_10396223	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300012916\|Ga0157310_10052302	Not Available	1187	Open in IMG/M
3300012939\|Ga0162650_100067972	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300012948\|Ga0126375_12077146	Not Available	504	Open in IMG/M
3300012986\|Ga0164304_10001001	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9008	Open in IMG/M
3300012988\|Ga0164306_10458979	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	971	Open in IMG/M
3300013297\|Ga0157378_11610305	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	695	Open in IMG/M
3300013307\|Ga0157372_12799903	Not Available	559	Open in IMG/M
3300014325\|Ga0163163_11514220	Not Available	732	Open in IMG/M
3300015372\|Ga0132256_101496348	All Organisms → cellular organisms → Bacteria → Proteobacteria	786	Open in IMG/M
3300015372\|Ga0132256_102679998	Not Available	598	Open in IMG/M
3300016270\|Ga0182036_10897773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	726	Open in IMG/M
3300016319\|Ga0182033_11049424	Not Available	726	Open in IMG/M
3300016319\|Ga0182033_11844759	Not Available	549	Open in IMG/M
3300016341\|Ga0182035_10236465	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1467	Open in IMG/M
3300016341\|Ga0182035_11993896	All Organisms → cellular organisms → Bacteria → Proteobacteria	527	Open in IMG/M
3300016357\|Ga0182032_10708091	All Organisms → cellular organisms → Bacteria	846	Open in IMG/M
3300016422\|Ga0182039_10222370	All Organisms → cellular organisms → Bacteria → Proteobacteria	1520	Open in IMG/M
3300016445\|Ga0182038_10904181	All Organisms → cellular organisms → Bacteria → Proteobacteria	778	Open in IMG/M
3300016445\|Ga0182038_11913332	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300017924\|Ga0187820_1063709	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1015	Open in IMG/M
3300017932\|Ga0187814_10145517	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	883	Open in IMG/M
3300017939\|Ga0187775_10149969	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	830	Open in IMG/M
3300017943\|Ga0187819_10240866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1060	Open in IMG/M
3300017947\|Ga0187785_10015686	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2632	Open in IMG/M
3300018058\|Ga0187766_10155939	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1420	Open in IMG/M
3300018060\|Ga0187765_10102461	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1561	Open in IMG/M
3300018060\|Ga0187765_10291939	Not Available	975	Open in IMG/M
3300018089\|Ga0187774_10614159	All Organisms → cellular organisms → Bacteria → Proteobacteria	706	Open in IMG/M
3300018468\|Ga0066662_10413747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1191	Open in IMG/M
3300018476\|Ga0190274_10821597	Not Available	989	Open in IMG/M
3300021560\|Ga0126371_10109723	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2764	Open in IMG/M
3300021560\|Ga0126371_12272610	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	655	Open in IMG/M
3300023067\|Ga0247743_1032634	Not Available	713	Open in IMG/M
3300025916\|Ga0207663_11046958	All Organisms → cellular organisms → Bacteria	655	Open in IMG/M
3300025920\|Ga0207649_10001009	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	17378	Open in IMG/M
3300025935\|Ga0207709_10066077	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2277	Open in IMG/M
3300025945\|Ga0207679_11861602	Not Available	549	Open in IMG/M
3300026067\|Ga0207678_11776559	Not Available	540	Open in IMG/M
3300026075\|Ga0207708_11135087	Not Available	682	Open in IMG/M
3300026121\|Ga0207683_11841848	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	554	Open in IMG/M
3300026142\|Ga0207698_12592215	All Organisms → cellular organisms → Bacteria → Proteobacteria	516	Open in IMG/M
3300026782\|Ga0207595_102117	Not Available	689	Open in IMG/M
3300027874\|Ga0209465_10432375	Not Available	659	Open in IMG/M
3300027875\|Ga0209283_10088282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2018	Open in IMG/M
3300027898\|Ga0209067_10686884	Not Available	592	Open in IMG/M
3300027903\|Ga0209488_10419248	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	989	Open in IMG/M
3300027992\|Ga0247750_1033513	Not Available	560	Open in IMG/M
3300029636\|Ga0222749_10165601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1086	Open in IMG/M
3300031057\|Ga0170834_106417121	All Organisms → cellular organisms → Bacteria → Proteobacteria	803	Open in IMG/M
(restricted) 3300031248\|Ga0255312_1110701	All Organisms → cellular organisms → Bacteria	673	Open in IMG/M
3300031446\|Ga0170820_10912681	Not Available	578	Open in IMG/M
3300031455\|Ga0307505_10520278	Not Available	574	Open in IMG/M
3300031524\|Ga0302320_10286701	All Organisms → cellular organisms → Bacteria → Acidobacteria	2208	Open in IMG/M
3300031668\|Ga0318542_10262946	All Organisms → cellular organisms → Bacteria	879	Open in IMG/M
3300031668\|Ga0318542_10674048	Not Available	540	Open in IMG/M
3300031682\|Ga0318560_10581952	Not Available	606	Open in IMG/M
3300031719\|Ga0306917_10140420	Not Available	1782	Open in IMG/M
3300031724\|Ga0318500_10321532	All Organisms → cellular organisms → Bacteria	760	Open in IMG/M
3300031768\|Ga0318509_10109604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1495	Open in IMG/M
3300031910\|Ga0306923_12113807	Not Available	568	Open in IMG/M
3300031941\|Ga0310912_11042864	Not Available	626	Open in IMG/M
3300031954\|Ga0306926_10061901	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4504	Open in IMG/M
3300031954\|Ga0306926_10960825	Not Available	1019	Open in IMG/M
3300032001\|Ga0306922_10785875	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	996	Open in IMG/M
3300032054\|Ga0318570_10206073	All Organisms → cellular organisms → Bacteria	888	Open in IMG/M
3300032144\|Ga0315910_11056353	Not Available	634	Open in IMG/M
3300033289\|Ga0310914_11739984	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	80.39%
Host-Associated	Host-Associated	19.61%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	76.47%
Plants	Host-Associated → Plants	19.61%
Aquatic	Environmental → Aquatic	3.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	74.51%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.80%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.82%
Freshwater	Environmental → Aquatic → Freshwater	2.94%
Sediment	Environmental → Aquatic → Sediment	0.98%
Peat	Environmental → Terrestrial → Peat	0.98%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.98%
Roots	Host-Associated → Plants → Roots	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	56.86%
Loam	Environmental → Terrestrial → Soil → Loam	10.78%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.84%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.88%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.92%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.98%
Sand	Environmental → Terrestrial → Soil → Sand	0.98%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.98%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.98%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.98%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	24.51%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.57%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.84%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.88%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.88%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.92%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.98%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.98%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.98%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.98%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.84%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.88%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	5.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.88%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.92%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	2.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.96%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.98%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.98%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.98%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.98%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.98%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.98%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2032320005	Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2-	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300001433	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5	Environmental	Open in IMG/M
3300001915	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C7	Host-Associated	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012473	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.12.yng.090610	Host-Associated	Open in IMG/M
3300012494	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.2.yng.030610	Host-Associated	Open in IMG/M
3300012500	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.4.old.080610	Host-Associated	Open in IMG/M
3300012892	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1	Environmental	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300012916	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2	Environmental	Open in IMG/M
3300012939	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t1i015	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017939	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MG	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018089	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MG	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300023067	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S221-509R-5	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026782	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G07A2-12 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027992	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S125-311R-5	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031248 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_T0_E5	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031455	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_S	Environmental	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032144	Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
FACEORA_2934240	2032320005	Soil	MRDFIEYLRAYRAYVSANLGWGKALRFALVWLAGMFAPLASRTLFELPNWAAVTWMIVWALLGYIFAPYGI
ICChiseqgaiiFebDRAFT_106697942	3300000363	Soil	MRDVGEYLRAYWAYVSTHLGWSKALVVAIVWLAGMFGPLAAKAFVELPNWLAITWMIGWALL
ICChiseqgaiiFebDRAFT_138306542	3300000363	Soil	MHDLQEYLRAYWAYISTAGWRKTLMLALIWLAGMFAPLGARTFVELPNSITIPWMIGWAVIGYIFAPYGLWKAQRKKSNV*
JGI24036J14985_1017342	3300001433	Corn, Switchgrass And Miscanthus Rhizosphere	MRDFGEYLRAYWAYVLANLGWGKALSVALVWLAGMFAPLVAKTLLELPNWMAMTWMIVWAVLGYIF
JGI24741J21665_10568461	3300001915	Corn Rhizosphere	MRDFGEYLRAYWAYVLANLGWGKALSVALVWLAGMFAPLVAKTLLELPNWMAMTWMIVW
Ga0062589_1012961151	3300004156	Soil	MRDFGEYLQAYRSYVSANLGWPRALLRAIIWFPGMLAPLWAKTFVHIPGWLSISWMTGW
Ga0062590_1013339241	3300004157	Soil	MRDFGEYLRAYRAYVSTHLGWGKALMLALVWLAGMFAPLAAKTLVELPNSVAISWMIGWALLGYIFAPY
Ga0070676_100102471	3300005328	Miscanthus Rhizosphere	MRDFGEYLRAYWAYVLANLGWGKALSIALVWLAGMFAPLVAKTLLELPNWMAMTWMIVWA
Ga0066388_1026791831	3300005332	Tropical Forest Soil	MRDFGEYLRAYWAYVLANLGWGKALTVALVWLAGMFAPLLAKTLLELPMWVATTWMIIWA
Ga0066388_1029717591	3300005332	Tropical Forest Soil	MRDFVEYLRAYRAYVSANLGWGKALRFALVWLAGMFAPLASKTLLELPNWVAVTWMIVWAFLGYIF
Ga0066388_1084620721	3300005332	Tropical Forest Soil	MRDFFEYLRAYRAYVSANLGWGKALRFALVWLAGMFAPLASKTLLELPNWVAVTWMIVWAFL
Ga0068868_1023258301	3300005338	Miscanthus Rhizosphere	MRDVGEYLRAYWAYVSTHLGWTKALMLALLWLAGMFAPLAAKTLVELPNSIGIPWMIGWAVLGYIFAPYGM
Ga0070714_1002433231	3300005435	Agricultural Soil	MRDFVEYLQAYRAYVSANLGWGKVLRFALVWLAGMFAPLASKTLLELPNWVAVTWMIVWAFLGYIFA
Ga0066707_101309603	3300005556	Soil	MRDFGEYLRAYRAYLSANLGWRKALLGALVWLAGMFAPLWAKAFVQLPNWAA
Ga0066708_110331092	3300005576	Soil	MRDFIEYLRAYRAYVSANLGWGKALRFALVWLAGMFAPLASRTLFELPNWAA
Ga0070702_1011572442	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MRDFGEYLRAYRAYVSANLGWGKALMGALAWFAGMFAPLWAKTLVQLPNWAAITWMIGWALLGYIFAPY
Ga0066903_1033877752	3300005764	Tropical Forest Soil	MQHHVLSLNQMRDLGEYLRAYVAYVSANLGWGKALRFVLVWLAGMFLPLGARTLVQLPEWVPMTWMIGWA
Ga0066903_1084990531	3300005764	Tropical Forest Soil	MRDFVEYLRAYRAYVSANLGWGKALRFVLVWLAGMFAPLASKTLLELPNWVAVTWMIVWAFLGY
Ga0068858_1024810182	3300005842	Switchgrass Rhizosphere	MTDFAEYLRAYRAYVVANLGWRKALMGALVWLAGISAPLWVRTFMELPAWLPITWMIGWASLSYVFAPY
Ga0068858_1025322972	3300005842	Switchgrass Rhizosphere	MRDVGEYLRAYWAYVSTHLGWTKALMLALLWLAGMFAPLAAKTLVELPNSIGIPWMIGWA
Ga0070716_1011843511	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MRDFGEYLRAYRAYVVANLGWRTALVSALVWLAGISAPLWVKTFMALPA
Ga0074063_100950561	3300006953	Soil	MRDIGEYLRAYRAYISANLGWRKALMGTLVWLAGMFAPLWAKALVQLPT
Ga0099795_106614101	3300007788	Vadose Zone Soil	MQNCVDYLRAYRAYVSANLGWTKAIMIALAWLAGMFAPLAVKMLVELPNWVAITWMISWSLLG
Ga0105243_100063563	3300009148	Miscanthus Rhizosphere	MRDVGEYLRAYWAYVSTHLGWTKALMLALLWLAGMFAPLAAKTLVELPNSIGIPWMIGWAVLGYIFAPYGMCKAQLKK*
Ga0126304_106758091	3300010037	Serpentine Soil	MQDVREYLRAYWAYVSTSLGWKKSLTVALVWVVGMFAPLGIKTFVEFPNWIGITWM
Ga0126384_121421441	3300010046	Tropical Forest Soil	MRDLGEYLRAYWAYILASLGWGKALSVALVWLAGMLAPLGAKMLFELPNWVALTWRIVWAVLGYIF
Ga0099796_103719152	3300010159	Vadose Zone Soil	MRDFGEYLRAYWAYVLANLGWGKALSAALGWLAGMFAPLVAKTLLELPNWVAITWMIVWAVLGYIFAPY
Ga0126381_1022250072	3300010376	Tropical Forest Soil	MRDFAEYLRAYRAYVATSLGWGKALRLALGWLAGLFVPLVAKTLVQVPDWAPITWM
Ga0126381_1050154752	3300010376	Tropical Forest Soil	MSREFGEYLRAYRAYVSANLGWRKALMGALAWLAGMFAPLWAKAFVQLPNWVPIT
Ga0137393_108387602	3300011271	Vadose Zone Soil	MRDFGEYLRAYWAYVLANLGWGKALSAALAWLAGMFAPLVAKTLFELPYWAAITWMIVWA
Ga0157340_10210271	3300012473	Arabidopsis Rhizosphere	MRDVGEYLRAYWAYVSTHLGWTKALMLALLWLAGMFAPLAAKTLVELPNSIGIPWMIGWAVLGYIF
Ga0157341_10063832	3300012494	Arabidopsis Rhizosphere	MRDVGEYLRAYWAYVSTHLGWTKALMLALLWLAGMFAPLAAKTLVELPNSIGIPWMIGWAVLG
Ga0157314_10271981	3300012500	Arabidopsis Rhizosphere	MRDVGEYLRAYWAYVSTHLGWTKALMLALLWLAGMFAPLAAKTLVELPNSIGIPWMIGWAVLGYI
Ga0157294_102619322	3300012892	Soil	MRDVGEYLQAYRAYVSANLGWRKALMGALVWLAGMFAPLWARALVELPYWMAITW
Ga0157283_103962231	3300012907	Soil	MRDVGEYLQAYRAYVSANLGWRKALMGALVWLAGMFAPLWARALVELPYW
Ga0157310_100523022	3300012916	Soil	MRDVGEYLRAYWAYVSTHLGWTKALMLALLWLAGMFAPLAAKTLVELPNSIGI
Ga0162650_1000679721	3300012939	Soil	MREVGEYLQAYRAYVSANLGWRKALMGALVWLAGMFAPLWARALVELPYWMAITWMIGWALLGYV
Ga0126375_120771462	3300012948	Tropical Forest Soil	MRDLGEYLRAYRAYVSGNLGWRKALTVALVWLAGMFAPLGARTLVELPNWVAITWM
Ga0164304_100010011	3300012986	Soil	MRDFGEYLRAYWAYVLANLGWGKALSVALVWLAGMFAPLVAKTLLELPNWMAMTWMIVWAVLG
Ga0164306_104589792	3300012988	Soil	MRDFGEYLRAYRAYVSANLGWGKALMGALAWFAGMFAPLWAKTLVQLPNWAAIT
Ga0157378_116103051	3300013297	Miscanthus Rhizosphere	MRDFGEYLRAYRAYVSANLGWGKALMGALAWFAGMFAPLWAKTLVQLPNWAAITWMIGWALLG
Ga0157372_127999032	3300013307	Corn Rhizosphere	MRDVGEYLRAYWAYVSTHLGWSKALLLALVWLAVMFAPLTAKMFVELPNAVAIPWMIGWAFLSYIFAP
Ga0163163_115142202	3300014325	Switchgrass Rhizosphere	MRDVGEYLQAYRAYVSANLGWRKALMGALVWLAGMFAPLWARALVELPYWMAIT*
Ga0132256_1014963482	3300015372	Arabidopsis Rhizosphere	MRDFAEYLRAYRAYVLANLGWAKALGAALVWLAVMFAPLLLKALMEFPSWV
Ga0132256_1026799981	3300015372	Arabidopsis Rhizosphere	MRDLGEYLRAYVAYVSANLGWGKALRFVLVWLAGMFAPLAARTLVLLPEWVAMTWMVGWA
Ga0182036_108977731	3300016270	Soil	MRDFVEYLRAYRAYISANLGWGKAMGFALVWLAGMFAPLASKTLLELPNWVAVTWMIVWA
Ga0182033_110494242	3300016319	Soil	MRDFVEYLRAYRAYVSVNLGWGKALRFALVWLAGMFAPLASKTLLELPNWVAVTWMIV
Ga0182033_118447591	3300016319	Soil	MRDFVEYLRAYRAYVSANLGWRKALMGALVWLVGMFAPLWAKALVQLPSWMAITWMIGWALLGYIF
Ga0182035_102364651	3300016341	Soil	MRDFREYLRAYWTYVSSNLGWGKALRLALVWLAGMFAPLGAKAFAEFPIWMAITWMVAWSLLGYVF
Ga0182035_119938961	3300016341	Soil	MRDFVEYLRAYRAYISANLGWGKALRFALVWLAGMFAPLATKTLLELPNWLAVTWMIVWAFLGYIFAPY
Ga0182032_107080911	3300016357	Soil	MRDFVEYLRAYRAYVSANLGWSNALRFALVWLAGMFARLASKTLLELPNWVAVTWMIVWAFLGYIFAPYGM
Ga0182039_102223702	3300016422	Soil	MRDFIEYLRAYRAYVSANLGWGKALRFALVWLAGMFAPLASKSLLELPNWVAVTWMILWAFLGYIFAPYGM
Ga0182038_109041812	3300016445	Soil	MRDFVEYLRAYRAYVSANLGWGKALRFALVWLAGMFAPLASKSLLELPNWVAVTWMILWAFL
Ga0182038_119133321	3300016445	Soil	MRDFGEYLRAYRAYVLANLGWGKALSVALVSLAGMFAPLVAKTLFELPNWAAMTWMIVWA
Ga0187820_10637092	3300017924	Freshwater Sediment	MRDFVEYLKAYRAYISANLGWGKALRVALVWLAGMFAPLAAKALLELPNWVATTWMIVWAFLGYIFAPYGM
Ga0187814_101455171	3300017932	Freshwater Sediment	MRDFVEYLQAYRAYISANLGWGKVLRFALVWLAGMFAPLAAKTLLELPNWVATTWMIVWAFLGYIFAPYGM
Ga0187775_101499692	3300017939	Tropical Peatland	MRDFWEYLRVYRDYVLANLGLSKALSIALVWLAGMFAPLAAKTLLELPNWLPISWMVVWAILGYVFAPYG
Ga0187819_102408663	3300017943	Freshwater Sediment	MQDFGEYLRAYRAYVSANLGWGKALRFAFVWLAGMFAPLAAKTSLELPNWVPNTWMIAWAFLGY
Ga0187785_100156864	3300017947	Tropical Peatland	MRDLGEYLKAYRAYVSTNLGWRRALMGAFVWLVGMFVPLWAKTLVELPSWAAITWMLVWALG
Ga0187766_101559391	3300018058	Tropical Peatland	MQDCVEYLRAYRAYVSANLGWGKALSVALVWLAGMFAPLIAKMLVEFPNWLAITWMISWAFLGYIFAPY
Ga0187765_101024611	3300018060	Tropical Peatland	MRDFGEYLRAYRAYVSNLGWRKALISALVWLAGMIAPLWAKTLVTLPYWVPTTWMISWA
Ga0187765_102919392	3300018060	Tropical Peatland	MQDCVEYLRAYRAYVSANLGWGKALSVALVWLAGMFAPLIAKMLVEFPNWLAI
Ga0187774_106141591	3300018089	Tropical Peatland	MRDFGEYLRAYRHYVSTNLGWGKALKFALVWHAGMFAPLVTKTFLELPNWVAITWMIVWALLGYIFAPYGM
Ga0066662_104137471	3300018468	Grasslands Soil	MRDVSEYLRAYWAYVSSNLGWGKALMVALVWLAGMFAPLEVKMLVQFPNWVAITWMIGWALLGYI
Ga0190274_108215971	3300018476	Soil	MRDFGEYLRAYRAYISANLGWRKALMGTLVWLAGMFAPLWAKALVQLPTWVAMRWMICWALLGLYFCALRI
Ga0126371_101097234	3300021560	Tropical Forest Soil	MRDFGEYLRAYWAYVSANLGWRKALTVALVWLGGMFAPLGVKTFVQLPNWVTISWMVGWA
Ga0126371_122726101	3300021560	Tropical Forest Soil	MRDFVEYLRAYRAYVSANLGWGKALRFALVWLAGMFAPLASKTLLELPNWVAVTWMIVWAFLG
Ga0247743_10326341	3300023067	Soil	MRDVGEYLRAYWAYVSTHLGWTKALMLALLWLAGMFAPLAAKTLVELPNSIGIPWMIGWAVLGY
Ga0207663_110469581	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MRDFVEYLQAYRAYVSANLGWGKVLRFALVWLAGMFAPLAAKTLLELPNWVAIVWMILWAFLGYVFAPY
Ga0207649_100010096	3300025920	Corn Rhizosphere	MRDFGEYLRAYWAYVLANLGWGKALSVALVWLAGMFAPLVAKTLLELPNWMAMTWMIVWAVLGYIFAPSECGNITALRLPT
Ga0207709_100660773	3300025935	Miscanthus Rhizosphere	MRDVGEYLRAYWAYVSTHLGWTKALMLALLWLAGMFAPLAAKTLVELPNSIGIPWMIGWAVLGYIFAP
Ga0207679_118616021	3300025945	Corn Rhizosphere	MRDVGEYLRAYWAYVSTHLGWTKALMLALLWLAGMFAPLAAKTLVELPNSIGISWMIGWAVL
Ga0207678_117765591	3300026067	Corn Rhizosphere	MRDVGEYLRAYWAYVSTHLGWSKALLLALVWLAVMFAPLTAKMFVELPNAVAIPS
Ga0207708_111350871	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MRDFGEYLRAYRAYVSIHLGWRRAVLGALAWLTGMFAPLWAKAFVQLPNWLTI
Ga0207683_118418482	3300026121	Miscanthus Rhizosphere	MRDFGEYLRAYRAYVSANLGWGKALMGALAWFAGMFAPLWAKTLVQLPNWAAITWMIGWA
Ga0207698_125922151	3300026142	Corn Rhizosphere	MTDFAEYLRAYRAYVVANLGWRKALMGALVWLAGISAPLWVRTFMELPAWLPIIWMIGWA
Ga0207595_1021171	3300026782	Soil	MRDFGEYLRAYWAYVLANLGWGKALSVALVWLAGMFAPLVAKTLLELPNWMAM
Ga0209465_104323751	3300027874	Tropical Forest Soil	MRDFGEYLRAYRAYVSTNLGWGRALVVALLWLAGMFAPLAAKTLVQLPNWIAVVW
Ga0209283_100882821	3300027875	Vadose Zone Soil	MRDFGEYLRAYRAYLSANLGWRKALLGALVWLAGMFAPLWAKAFVQLPNWAAIT
Ga0209067_106868841	3300027898	Watersheds	MRDFVEYLRAYRAYVSANLGWGKALRFALVWLAGMFAPLASKTLLELPNWVAVTWMIVWAFLGYIFAPYG
Ga0209488_104192481	3300027903	Vadose Zone Soil	MRDFGEYLRAYWAYVLANLGWGKALSAALAWLAGMFAPLVAKTLFELPYWAAITWMIVWAVLGYI
Ga0247750_10335131	3300027992	Soil	MRDFGEYLRAYWAYVLANLGWGKALSVALVWLAGMFAPLVAKTLLELPNWMAMTWM
Ga0222749_101656011	3300029636	Soil	MRDLGEYLRAYVAYVSANLGWGKALRFVLVWLAGMFLPLGARTLVQLPEWVAMTWMIGWALLGY
Ga0170834_1064171211	3300031057	Forest Soil	MRDFVEYLQAYRAYVSANLGWGKVLRFALVWLAGMFAPLAAKTLLELPNWVAIVWM
(restricted) Ga0255312_11107012	3300031248	Sandy Soil	MRDVGEYLRAYWAYVSTHLGWTKALMLALLWLAGMFAPLAAKTLVELPNSIGIPWMI
Ga0170820_109126811	3300031446	Forest Soil	MRDFGEYLRAYRAYVSANLGWGKALRFALVWLAGMFAPLAAKTLFELPNWTAMTWMIGW
Ga0307505_105202782	3300031455	Soil	MHDLGEYLRAYRSYVSAGLGWGKAVIIALAWVAAMFAPLAARMVVELPNWLSITWMLGWALVAYIFTPYGLWKYHRDQSS
Ga0302320_102867011	3300031524	Bog	MQDFIEYLRAYRAYVSANLGWGIVLKLAAVWLAGMCVPLAARALVQLPTWAA
Ga0318542_102629461	3300031668	Soil	MRDFGEYLRAYRAYVLANLGWGKALSVALVWLAGMFAPLVAKTLFELPNWAAMTWMIVWALLGY
Ga0318542_106740482	3300031668	Soil	MRDFVEYLRAYRAYVSANLGWGKALRFALVWLAGMFAPLASKTLLALPNWVAV
Ga0318560_105819522	3300031682	Soil	MRDFVEYLRAYRAYVSANLGWGKALRFALVWLAGMFAPLASKTLLELPNWVAVTWMIVWAFLGYIFATECGNIIALRLRAQVS
Ga0306917_101404204	3300031719	Soil	MRDFVEYLRAYRAYVSANLGWSNALRFALVWLAGMFAPLASKTLLELPNWVAVTWMIVWAFLGYIFAPYG
Ga0318500_103215321	3300031724	Soil	MRDFGEYLRAYRAYVLANLGWGKALSVALVWLAGMFAPLVAKTLFELPNWVAMTWMIVWALLGYIFAPYG
Ga0318509_101096041	3300031768	Soil	MRDFVEYLRAYRAYVSANLGWGKALRFALVWLAGMFAPLASKTLLELPNWVAVTWMIVWA
Ga0306923_121138071	3300031910	Soil	MRDFVEYLRAYRAYIAANLGWGQALRVALVWLAGMFAPLASKTLFALPNWAA
Ga0310912_110428642	3300031941	Soil	MRDFVEYLRAYRAYVSANPGWSKALRFALVWLAGMFAPLASKTLLELPNWVAVTWMIVWAFLGYIFCALWNVETSPQTDCELKSGR
Ga0306926_100619011	3300031954	Soil	MRDFVEYLRAYRAYISANLGWGKAMGFALVWLAGMFAPLASKTLLELPNWVAVTWMIVWAFLGYIFAP
Ga0306926_109608252	3300031954	Soil	MRDFVEYLRAYRAYVSANLGWGKALRFALVWLAGMFAPLASKSLLELPNWVAVTWMILWAFLGYIFAPYGM
Ga0306922_107858751	3300032001	Soil	MRDFVDYLRAYRAYVSANLGWGKALKFALVWLAGMFAPWASRTLLELPNWVPVTWMIVWA
Ga0318570_102060732	3300032054	Soil	MRDFGEYLRAYRAYVLANLGWGKALSVALVWLAGMFAPLVAKTLFELPNWVAMTWMIVWALLGYVFAPY
Ga0315910_110563531	3300032144	Soil	MRDIGAYLRAYRAYLASRGWGKAVMLALVWIAGMFAPLAARTLVPLPTWLAVTWMVGWALLG
Ga0310914_117399841	3300033289	Soil	MRDFGEYLRAYRAYVLANLGWGKALSVALVWLAGMFAPLVAKTLFELPNWVAMTWMIVWALL

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.39
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.39
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters