Metagenome / Metatranscriptome Family F101652

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101652
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	78 residues
Representative Sequence	LGALTAGIFWIGIYVGISYFLGEEIAKVVGKIGTKALIAVIVLVVAGLLIRAGVSKWRAARQARLAEQDPRKVEATQD
Number of Associated Samples	84
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.98 %
% of genes near scaffold ends (potentially truncated)	97.06 %
% of genes from short scaffolds (< 2000 bps)	94.12 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (61.765 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (44.118 % of family members)
Environment Ontology (ENVO)	Unclassified (58.824 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (50.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 62.26% β-sheet: 0.00% Coil/Unstructured: 37.74%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.43
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.43
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF12705	PDDEXK_1	23.53
PF00196	GerE	2.94
PF13361	UvrD_C	2.94
PF01569	PAP2	1.96
PF13602	ADH_zinc_N_2	1.96
PF03601	Cons_hypoth698	1.96
PF00300	His_Phos_1	1.96
PF04185	Phosphoesterase	0.98
PF02861	Clp_N	0.98
PF05552	TM_helix	0.98
PF02151	UVR	0.98
PF13546	DDE_5	0.98
PF05988	DUF899	0.98
PF05175	MTS	0.98
PF01936	NYN	0.98
PF06445	GyrI-like	0.98
PF01402	RHH_1	0.98
PF00174	Oxidored_molyb	0.98
PF00282	Pyridoxal_deC	0.98
PF00583	Acetyltransf_1	0.98
PF03551	PadR	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG2855	Uncharacterized membrane protein YadS, UPF0324 family	Function unknown [S]	1.96
COG0076	Glutamate or tyrosine decarboxylase or a related PLP-dependent protein	Amino acid transport and metabolism [E]	0.98
COG0542	ATP-dependent Clp protease, ATP-binding subunit ClpA	Posttranslational modification, protein turnover, chaperones [O]	0.98
COG0668	Small-conductance mechanosensitive channel	Cell wall/membrane/envelope biogenesis [M]	0.98
COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	General function prediction only [R]	0.98
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.98
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.98
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.98
COG2041	Molybdopterin-dependent catalytic subunit of periplasmic DMSO/TMAO and protein-methionine-sulfoxide reductases	Energy production and conversion [C]	0.98
COG3264	Small-conductance mechanosensitive channel MscK	Cell wall/membrane/envelope biogenesis [M]	0.98
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	0.98
COG3915	Uncharacterized conserved protein	Function unknown [S]	0.98
COG4312	Predicted dithiol-disulfide oxidoreductase, DUF899 family	General function prediction only [R]	0.98

NCBI Taxonomy

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Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.75 %
Unclassified	root	N/A	37.25 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	61.76 %
Unclassified	root	N/A	37.25 %
Viruses	superkingdom	All Organisms → Viruses	0.98 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	61.76 %
Unclassified	root	N/A	37.25 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.98 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	58.82 %
Unclassified	root	N/A	37.25 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.98 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.98 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	55.88 %
Unclassified	root	N/A	37.25 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.98 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.98 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.98 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	51.96 %
Unclassified	root	N/A	37.25 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.98 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.98 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.25 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	12.75 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	2.94 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1.96 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.98 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.98 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.98 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.25 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	12.75 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	1.96 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.96 %
Nocardiopsaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae	0.98 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.98 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.98 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.98 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.25 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	12.75 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	1.96 %
Nocardiopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis	0.98 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.98 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.98 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.98 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.98 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.25 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	12.75 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1.96 %
Nocardiopsis gilva	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis → Nocardiopsis gilva	0.98 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.98 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.98 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.98 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.98 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005332\|Ga0066388_102609889	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	920	Open in IMG/M
3300005332\|Ga0066388_106384462	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300005764\|Ga0066903_101443386	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1295	Open in IMG/M
3300005764\|Ga0066903_103656274	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	828	Open in IMG/M
3300005841\|Ga0068863_100602967	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1087	Open in IMG/M
3300006028\|Ga0070717_10231944	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1625	Open in IMG/M
3300006162\|Ga0075030_100857625	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	717	Open in IMG/M
3300006175\|Ga0070712_100173796	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1673	Open in IMG/M
3300006806\|Ga0079220_10334645	Not Available	954	Open in IMG/M
3300010360\|Ga0126372_12024076	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	623	Open in IMG/M
3300010360\|Ga0126372_12434091	Not Available	574	Open in IMG/M
3300010376\|Ga0126381_100023426	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	7273	Open in IMG/M
3300010376\|Ga0126381_102267614	All Organisms → cellular organisms → Bacteria → Terrabacteria group	780	Open in IMG/M
3300010379\|Ga0136449_103017916	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	657	Open in IMG/M
3300012960\|Ga0164301_11073361	Not Available	638	Open in IMG/M
3300012988\|Ga0164306_11765866	Not Available	537	Open in IMG/M
3300013100\|Ga0157373_10819833	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	687	Open in IMG/M
3300013297\|Ga0157378_11589882	Not Available	699	Open in IMG/M
3300014325\|Ga0163163_10351538	Not Available	1530	Open in IMG/M
3300015374\|Ga0132255_102301213	Not Available	822	Open in IMG/M
3300016357\|Ga0182032_10277851	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1313	Open in IMG/M
3300016371\|Ga0182034_11262249	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	644	Open in IMG/M
3300016387\|Ga0182040_11514368	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	570	Open in IMG/M
3300017959\|Ga0187779_10514333	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	793	Open in IMG/M
3300017961\|Ga0187778_10657838	Not Available	706	Open in IMG/M
3300018060\|Ga0187765_11244191	Not Available	524	Open in IMG/M
3300020580\|Ga0210403_10460448	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1036	Open in IMG/M
3300021560\|Ga0126371_10886294	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1036	Open in IMG/M
3300025898\|Ga0207692_10108642	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1535	Open in IMG/M
3300025898\|Ga0207692_11071369	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	533	Open in IMG/M
3300025915\|Ga0207693_11271849	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	552	Open in IMG/M
3300025916\|Ga0207663_11619204	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	521	Open in IMG/M
3300025928\|Ga0207700_10781049	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	854	Open in IMG/M
3300025939\|Ga0207665_10993233	Not Available	668	Open in IMG/M
3300025944\|Ga0207661_10572650	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1036	Open in IMG/M
3300027094\|Ga0208094_109964	Not Available	500	Open in IMG/M
3300029636\|Ga0222749_10568168	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	618	Open in IMG/M
3300031544\|Ga0318534_10045501	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	2446	Open in IMG/M
3300031544\|Ga0318534_10532161	Not Available	670	Open in IMG/M
3300031561\|Ga0318528_10162397	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1192	Open in IMG/M
3300031564\|Ga0318573_10047557	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	2082	Open in IMG/M
3300031668\|Ga0318542_10672574	Not Available	541	Open in IMG/M
3300031680\|Ga0318574_10342038	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	872	Open in IMG/M
3300031680\|Ga0318574_10847602	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	535	Open in IMG/M
3300031713\|Ga0318496_10354129	Not Available	811	Open in IMG/M
3300031719\|Ga0306917_11358448	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	549	Open in IMG/M
3300031719\|Ga0306917_11386522	Not Available	542	Open in IMG/M
3300031736\|Ga0318501_10391961	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	750	Open in IMG/M
3300031744\|Ga0306918_10797203	Not Available	738	Open in IMG/M
3300031771\|Ga0318546_11183723	Not Available	537	Open in IMG/M
3300031777\|Ga0318543_10280406	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	745	Open in IMG/M
3300031778\|Ga0318498_10139931	Not Available	1101	Open in IMG/M
3300031778\|Ga0318498_10322775	Not Available	691	Open in IMG/M
3300031779\|Ga0318566_10268953	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	844	Open in IMG/M
3300031781\|Ga0318547_10246704	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1076	Open in IMG/M
3300031782\|Ga0318552_10043367	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2111	Open in IMG/M
3300031794\|Ga0318503_10105674	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	896	Open in IMG/M
3300031795\|Ga0318557_10481790	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	570	Open in IMG/M
3300031805\|Ga0318497_10528275	Not Available	661	Open in IMG/M
3300031819\|Ga0318568_10274981	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1044	Open in IMG/M
3300031821\|Ga0318567_10373315	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	807	Open in IMG/M
3300031831\|Ga0318564_10061768	Not Available	1642	Open in IMG/M
3300031831\|Ga0318564_10378967	Not Available	620	Open in IMG/M
3300031845\|Ga0318511_10511165	Not Available	556	Open in IMG/M
3300031846\|Ga0318512_10740748	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	505	Open in IMG/M
3300031860\|Ga0318495_10075416	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis → Nocardiopsis gilva	1505	Open in IMG/M
3300031879\|Ga0306919_10586613	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	860	Open in IMG/M
3300031890\|Ga0306925_10557538	All Organisms → Viruses → Predicted Viral	1214	Open in IMG/M
3300031893\|Ga0318536_10219989	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	966	Open in IMG/M
3300031897\|Ga0318520_10421836	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	817	Open in IMG/M
3300031897\|Ga0318520_10682480	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	641	Open in IMG/M
3300031910\|Ga0306923_10946585	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	940	Open in IMG/M
3300031912\|Ga0306921_11261012	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	820	Open in IMG/M
3300031912\|Ga0306921_11729397	Not Available	675	Open in IMG/M
3300031941\|Ga0310912_10576117	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	876	Open in IMG/M
3300032001\|Ga0306922_11037103	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	844	Open in IMG/M
3300032001\|Ga0306922_12083767	Not Available	550	Open in IMG/M
3300032009\|Ga0318563_10689966	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	548	Open in IMG/M
3300032010\|Ga0318569_10399199	Not Available	641	Open in IMG/M
3300032010\|Ga0318569_10410609	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	631	Open in IMG/M
3300032043\|Ga0318556_10662854	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	543	Open in IMG/M
3300032052\|Ga0318506_10126392	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1108	Open in IMG/M
3300032060\|Ga0318505_10157919	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1053	Open in IMG/M
3300032064\|Ga0318510_10147523	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	927	Open in IMG/M
3300032064\|Ga0318510_10256817	Not Available	719	Open in IMG/M
3300032065\|Ga0318513_10350907	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	718	Open in IMG/M
3300032065\|Ga0318513_10593690	Not Available	542	Open in IMG/M
3300032066\|Ga0318514_10406255	Not Available	723	Open in IMG/M
3300032067\|Ga0318524_10209475	Not Available	998	Open in IMG/M
3300032076\|Ga0306924_10386341	Not Available	1603	Open in IMG/M
3300032076\|Ga0306924_12450327	Not Available	525	Open in IMG/M
3300032180\|Ga0307471_103684934	Not Available	542	Open in IMG/M
3300032205\|Ga0307472_101958722	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	586	Open in IMG/M
3300032261\|Ga0306920_100264093	All Organisms → cellular organisms → Bacteria	2567	Open in IMG/M
3300032261\|Ga0306920_102655949	Not Available	685	Open in IMG/M
3300032783\|Ga0335079_10416047	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1447	Open in IMG/M
3300032892\|Ga0335081_10291731	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2168	Open in IMG/M
3300032893\|Ga0335069_11500554	Not Available	726	Open in IMG/M
3300032897\|Ga0335071_10434514	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1266	Open in IMG/M
3300033134\|Ga0335073_11234491	Not Available	746	Open in IMG/M
3300033290\|Ga0318519_10967276	Not Available	528	Open in IMG/M
3300033807\|Ga0314866_100912	Not Available	520	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.10%
Host-Associated	Host-Associated	4.90%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.12%
Plants	Host-Associated → Plants	4.90%
Aquatic	Environmental → Aquatic	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.12%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.96%
Sediment	Environmental → Aquatic → Sediment	0.98%
Roots	Host-Associated → Plants → Roots	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	71.57%
Loam	Environmental → Terrestrial → Soil → Loam	13.73%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.98%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.98%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	62.75%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	8.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.82%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	7.84%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.98%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.98%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	44.12%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.67%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.84%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.90%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.90%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.92%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.96%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.98%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.98%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.98%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300027094	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF022 (SPAdes)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300033807	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_100_10	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066388_1026098892	3300005332	Tropical Forest Soil	VRFWLFLLGALVAGIFWIGIYVGTSYLLGEEIAKLVGKIGTKALIGVIILVVAGLLIRAGLSKWRANRQARLAGQAPAQG*
Ga0066388_1063844621	3300005332	Tropical Forest Soil	AGIFWIGIYVGVSYFLGEEIAKLVGKAGTKALIGVIVLVVVGLLIRAGVSKWRSARQARLAGHDPPEVEVADLRV*
Ga0066903_1014433862	3300005764	Tropical Forest Soil	IFWIGIYVGVSYFLGEEIAKLVGKIGTKALIGVIVLVVAGLLIKAGVSRWRGARQARLAGQDPSKVEAA*
Ga0066903_1036562741	3300005764	Tropical Forest Soil	IFRVRFWLFLLGALVAGIFWIGSYVGTSYLLGEEIAKLVGKIGTKALIAVILLVVVGLSIRAGLSKWRANRQARLAGQAPASVP*
Ga0068863_1006029672	3300005841	Switchgrass Rhizosphere	VSGIFHVRFWLFLLGALTAGIFWIGIYVGVSYFLGEEIAKLVGKIGTKALIDIIVLIVAGLLIRAALSKWRASRQARPAEQDPPKIEAKQD*
Ga0070717_102319443	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	HVRFWLFLLGALTAGIFWIGIYVGVSYFLGEEIAKLVGKIGTKALIGVIVLVVAGLLIRAALSKWRASRQARPAEQDPPKIEAKQD*
Ga0075030_1008576252	3300006162	Watersheds	RFYVFMLGALTAGIGWIGIYVGLSYFLGEEIAKHIGKIGTKALVGVIVIVVLGLCIRVAVARWRNTRQARSAEHVTP*
Ga0070712_1001737961	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VRFWLFLLGALTAGIFWIGIYVGVSYFLGEEIAKLVGKIGTKALIGVIVLVVVGLLIRAGVSKWRGARQARLAD*
Ga0079220_103346452	3300006806	Agricultural Soil	WLFLLGALVAGVFWIGIYVGISYLLGEEIAKLVGKIGTKALIGVIILVVVGLLIRAGLSKWRANRQARLAGQAPAEG*
Ga0126372_120240761	3300010360	Tropical Forest Soil	LAAGIFWIGIYVGVSYFLGEEIAKLVGKIGTKALIGVIVLVVVGLLIRAGVSKWRSARQARLAGHDPPEVEVADLRV*
Ga0126372_124340911	3300010360	Tropical Forest Soil	LAAGIFWIGIYVGVSYFLGEEIAKLVGKIGTKALIGVIVLVVAGLLIRAGVSKWRASRQAQLAGQDPPKAAVTQD*
Ga0126381_10002342612	3300010376	Tropical Forest Soil	FWLFLLGALTAGIFWIGIYVGVSYFLGAEIAKLVGKIGTKALIGVIVLVVVGLLIKAGVSRWRGNRQARLAGQDPPKVEATQDLSQCRCGRG*
Ga0126381_1022676141	3300010376	Tropical Forest Soil	LTAGIFWIGIYVGVSYFLGEEIARLVGKIGTKALIGVIVLVVAGLLIRAGVSKWRASRQARLAGQDPPKAAVTQD*
Ga0136449_1030179162	3300010379	Peatlands Soil	VRGALTAGIVWIGMYGGLAYWRGEEIAKYIGKIGTKAVIGVIVLVVVGLLIRAGVAKWRAARQERVDEPDPGKVEAAQD*
Ga0164301_110733611	3300012960	Soil	WLFLLGALVAGVFWIGLYVGISYVLGEEIAKLVGKIGTKALIGVIVLVVVGLLIRAGLSKWRANRQARLAGQAPAEG*
Ga0164306_117658662	3300012988	Soil	LFLLGALTAGIFWIGIYVGVSYFLGEEIAKLVGKIGAKALIGVIMLVVVGLLIRAGLSKWRASRQARPAEQDPPKIEARQD*
Ga0157373_108198332	3300013100	Corn Rhizosphere	FHVRFLLFMQGALVAGIFWIGIYVGISYLLGEEIAKLVGKIGTKALIGVIVLVVAGLLIRAALSKWRASRQARPAEQDPPKIEAKQD*
Ga0157378_115898821	3300013297	Miscanthus Rhizosphere	VFWIGIYVGISYVLGEEIAKLVGKIGTKALIGVIVLVVAGLLIRAGLSKWRANRQARLAGQAPAEG*
Ga0163163_103515381	3300014325	Switchgrass Rhizosphere	GIFRVRFWLFLLGALVAGVFWIGIYVGISYVLGEEIAKLVGKIGTKALIGVIILVVVGLLIRAGLSKWRANRQARLAGQAPAEG*
Ga0132255_1023012132	3300015374	Arabidopsis Rhizosphere	LTAGIFWIGIYVGVSYFLGEEIAKLVGKIGTKALIGVIVLVVVGLLIRVGVSKWRGARQARLAG*
Ga0182032_102778513	3300016357	Soil	FWIGIYVGIAYLLGEEIAKLVGKIGTKALIGVITLVVVGLLIRAGLSRWRAKRQARLAGQDPPKVEAAQG
Ga0182034_112622492	3300016371	Soil	WLFMLGALTAGVFWIGIYVGISYLLGEEIAKLVGKIGTKALLGVIMLVVVGLLIRAGVSKWRASRQARLAGQDPPKVEAAQG
Ga0182040_115143682	3300016387	Soil	FWLFLLGALTAGIFWIGIYVGVSYLLGEEIAKVVGKIGTKALIGVIVLVVAGLLIRAGVAKWRAGRQARLAGQDPAKVEATRD
Ga0187779_105143331	3300017959	Tropical Peatland	GIFHVRFWLFLLGALAAGVFWIGIYVGISYLLGEEIAKLVGKIGTKALIGVIILVVIGLLIRAGLSKWRANRQARLAEQDPPKVEATQD
Ga0187778_106578381	3300017961	Tropical Peatland	FWLFLLGALTAGVFWIGIYVGVSYFLGEEIAKLVGKAGTKLLISVIVLVVAGLLIRTGVSKWRAARQARLAAQDPPKVEATSD
Ga0187765_112441912	3300018060	Tropical Peatland	FWIGIYVGISYLLGEEIAKLVGKIGTKALIGVITLVVAGLLIRAGWSKWRASRQARPAGQEPARG
Ga0210403_104604481	3300020580	Soil	TAGIFWIGIYVGVSYFLGEEIAKLVGKIGTKALIGVIVLVVVGLLIRAGLSKWRGARQARLAD
Ga0126371_108862941	3300021560	Tropical Forest Soil	IFWIGIYVGVSYFLGEEIAKLVGKIGTKALIGVIVLVVAGLLIRVGVAKWRGARQARLAGQDPPKVEAT
Ga0207692_101086421	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	FHVRFWLFLLGARAAGIFWIGIYVGVSYFLGEEIAKLVGKIGTKALIGVIVLVVVGLLIRAGLSKWRARRQARPAEQDPPKIEAKQD
Ga0207692_110713691	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	FHVRFWLFLLGALTAGIFWIGIYVGVSYFLGAEIAKLVGKIGTKALIGVIVLVVVGLLIRAGVSKWRGARQARLAD
Ga0207693_112718491	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	GRAGRRHLWIGIYVGIAYLLGEEIAKLVGKVGTKALIGVIVLVVAGLLIRAALSKWRASRQARPAEQDPPKIEAKQD
Ga0207663_116192042	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	LAAGIFWIGIYVGVSYFLGEEIAKLVGKIGTKALIGVIVLVAAGLLIRAALSKWRASRQARLAGQDPPRIEAKQD
Ga0207700_107810492	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	LLGALAAGIFWIGIYVGTSYFLGEEIAKLVGKVGTKALIGVIVLVVVGLLIRAGLSKWRASRQARPAEQDPPKIEAKQD
Ga0207665_109932332	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	GIYVGVSYFLGEEIAKPVGKIGTKALIGVIVLVVVGLLIRAGLSKWRARRQARPAEQDPPKIEAKQD
Ga0207661_105726502	3300025944	Corn Rhizosphere	WLFLLGALAAGIFWIGIYVGVSYFLGEEIAKLVGKIGTKALIGVIVLLVVGLLIRAGLSKWRASRQARPAEQDPPKIEAKQD
Ga0208094_1099641	3300027094	Forest Soil	LLGALTAGVFWIGIYVGLSYFLGEEIAKLVGKIGTKALIGVIVLVVVGLLIRAGVSKWRGARQARLAD
Ga0222749_105681682	3300029636	Soil	LLGALTAGIFWIGIYVGVSYFLGAEIAKLVGKIGTKALIGVIVLVVVGLLIRAGVSKWRGARQARLAD
Ga0318534_100455014	3300031544	Soil	FMLGAMAAGVFWIGIYVGISYLLGEEIAKLVGKIGTKALIGVITLVVVGLLIRAGLSRWRAKRQARLAGQDPPKVEAAQG
Ga0318534_105321611	3300031544	Soil	SHVRFWLFLLGAMTAGIFWIGIYVGVSYFLGEEIAKVVGAIGAKALIGVIVLVVAGLLIRAGVSKWRGARQARLAGQDPPKVEAT
Ga0318528_101623971	3300031561	Soil	IGIYVGVSYFLGEEIARLVGKIGAKALAGVIILVVVGLLIRAGVSKWRANRQARLAGQDPPKVAATQD
Ga0318573_100475571	3300031564	Soil	LGALAAGVFWIGIYVGIAYLLGEEIAKLVGKIGTKALIGVITLVVVGLLIRAGLSRWRAKRQARLAGQDPPKVEAAQG
Ga0318542_106725741	3300031668	Soil	GIYVGGAYFLGEEIAKLIGTIGTKALISVIVLIVVGLSIRAGLSKWRAARQARLAEQDPPKVEARSD
Ga0318574_103420381	3300031680	Soil	GIYVGVSYFLGEEIAKVVGKIGTKALIGVIVLVVVGLLIRAGVAKWRGARQARLAGQDPPKVEATGL
Ga0318574_108476022	3300031680	Soil	FRVRFWLFLLGALTAGIFWIGIYVGGAYFLGEEIAKLIGKIGTKALISVIVLIVVGLSIRAGLSKWRAARQARLAEQDPPKVEARSD
Ga0318496_103541292	3300031713	Soil	FLLGALTAGIFWIGIYVGVSYFLGEEIAKVVGKIGTKALIGVIVLVVVGLLIRAGISKWRAARQARLAGQDPPKVEATGLRA
Ga0306917_113584482	3300031719	Soil	FHVRFWLFLLGALTAGIFWIGIYVGVSYFLGEEIAKVVGKIGTKALIGVIVLVVAGLLIRAGVAKWRAGRQARLAGQDPAKVEATRD
Ga0306917_113865221	3300031719	Soil	VSGIFHVRFWLFLLGALTAGIFWIGIYVGVSYFLGEEIAKVVGKIGTKALIGVIVLVVVGLLIRAGVSKWRGTRQARLAGQDPPKVEAAGLRV
Ga0318501_103919612	3300031736	Soil	IGIYVGISYLLGEEIAKLVGKIGTKALIGVITLVVVGLLIRAGLSRWRAKRQARLAGQDPPKVEAAQG
Ga0306918_107972034	3300031744	Soil	WLFLLGAMTAGIFWIGIYVGVSYFLGEEIAKVVGAIGAKALIGVIVLVVVGLLIRAGVSKWRGARQARLAGQDPPKVEAT
Ga0318546_111837232	3300031771	Soil	FWLFMLGALAAGVFWIGIYVGISYLLGEEIAKLVGKIGTKALIGVILLVVVGLSIRAGLSKWRANRQARLAAQAPAPAP
Ga0318543_102804062	3300031777	Soil	LLGALTAGIFWIGIYVGVSYFLGEEIAKVVGKIGTKALIGVIVLVVAGLLIRAGVAKWRAGRQARLAGQDPAKVGATRD
Ga0318498_101399311	3300031778	Soil	VRFWLFLLGALAAGIFWIGIYVGVSYFLGEEIAKVVGKAGTKALIAVIVLMVVGVSIRAGLSKWRASRQARLAEQDPPKVAAA
Ga0318498_103227751	3300031778	Soil	VFWIGIYVGISYLLGEEIAKLVGKIGTKALIGVITLVVVGLLIRAGLSRWRAKRQARLAGQDPPKVEAAQG
Ga0318566_102689531	3300031779	Soil	AGIFWIGIYVGVSYFLGEEIAKVVGAIGAKALIGVIVLVVAGLLIRAGVSKWRANRQAQLDVQDPPKIEATQD
Ga0318547_102467043	3300031781	Soil	IFHVRFWLFMLGAMAAGVFWIGIYVGISYLLGEEIAKLVGKIGTKALIGVITLVVVGLLIRAGLSRWRAKRQARLAGQDPPKVEAAQG
Ga0318552_100433672	3300031782	Soil	FLLGALTAGIFWIGIYVGVSYLLGEEIAKVVGKIGTKALIGVIVLVVAGLLIRAGVAKWRAGRQARLAGQDPAKVGATRD
Ga0318503_101056741	3300031794	Soil	SGIFHVRFWLFLLGALTAGIFWIGIYVGVSYFLGEEIARLVGKIGAKALAGVIILVVVGLLIRAGVSKWRANRQARLAGQDPPKVAATQD
Ga0318557_104817901	3300031795	Soil	FLLGALTAGIFWIGIYVGVSYFLGEEIAKVVGKIGTKALIGVIVLVVAGLLIRAGVAKWRAGRQARLAGQDPAKVGATRD
Ga0318497_105282751	3300031805	Soil	VRFWLFLLGAMTAGIFWIGIYVGVSYFLGEEIAKVVGAIGAKALIGVIVLVVAGLLIRAGVSKWRGARQARLAGQDPPKVEAT
Ga0318568_102749812	3300031819	Soil	LGALTAGIFWIGIYVGISYFLGEEIAKVVGKIGTKALIAVIVLVVAGLLIRAGVSKWRAARQARLAEQDPRKVEATQD
Ga0318567_103733151	3300031821	Soil	FLLGALTAGIFWIGIYVGVSYFLGEEIAKVVGKIGAKAVIAVIVLVVAGLLIRAGVSKWRAARQARLAEQDPSKVEATQD
Ga0318564_100617682	3300031831	Soil	IFWIGIYVGVSYLLGEEIAKVVGKIGTKALIGVIVLVVAGLLIRAGVAKWRAGRQARLAGQDPAKVGATRD
Ga0318564_103789671	3300031831	Soil	IFRVRFWLFLLGALAAGIFWIGIYVGVSYFLGEEIAKLVGKAGTKALIAVIVLMVVGVSIRAGLSKWRASRQARLAEQDPPKVAAA
Ga0318511_105111652	3300031845	Soil	GALAAGIFWIGIYVGGAYFLGEEIAKLIGKIGTKALISVIVLIVVGLSIRAGLSKWRAARQARLAEQDPPKVEARSD
Ga0318512_107407481	3300031846	Soil	GIYVGVSYFLGEEIAKVVGKIGAKAVIAVIVLVVAGLLIRAGVSKWRAARQARLAEQDPSKVEATQD
Ga0318495_100754162	3300031860	Soil	GALTAGIFWIGIYVGVSYFLGEEIAKVVGKIGTKALIGVIVLVVAGLLIRAGVAKWRAGRQARLAGQDPAKVGATRD
Ga0306919_105866131	3300031879	Soil	FWIGIYVGVSYFLGEEIAKVVGKVGTKALIAVIVLMVAGLGIRAGLSKWRANRQARLAAQDLPKVGATSD
Ga0306925_105575381	3300031890	Soil	HVRFWLFLLGALTAGVFWIGIYVGVSYFLGEEIAKLVGKIGTKALIGVIVLVVVGLLIRAGVSKWRGARQARLAGQDPPKVEAT
Ga0318536_102199892	3300031893	Soil	IFHVRFWLFLLGALTAGIFWIGIYVGVSYFLGEEIARLVGKIGAKALAGVIILVVVGLLIRAGVSKWRANRQARLAGQDPPKVAATQD
Ga0318520_104218361	3300031897	Soil	FLLGALTAGIFWIGIYVGISYFLGEEIAKVIGKAGTKVLIAVIVLIVAGLAIRAGLSKWRAARQARLAPQDPPKVETA
Ga0318520_106824801	3300031897	Soil	IFWIGIYVGVSYFLGEEIAKVVGKIGTKALIGVIVLVVAGLLIRAGVAKWRAGRQARLAGQDPAKVGATRD
Ga0306923_109465851	3300031910	Soil	HVRFWLFMLGALAAGVFWIGIYVGISYLLGEEIAKLVGKIGTKALIGVIILVVAGLLIRAGLSKWRANRQARVAEAGPAQG
Ga0306921_112610121	3300031912	Soil	VSGIFHVRFWLFLLGALTAGIFWIGIYVGVAYFLGEEIAKVVGKIGAKALISVIVLVVAGLLIRAGVSKWRANRQAQLDVQDPPKIEATQD
Ga0306921_117293971	3300031912	Soil	RFWLFTLGALAAGVFWIGIYVGISYLLGEEIAKLVGKIGTKALIGVIVLVVVGLLIRAGWSKWRADRQARMAEQNPAQG
Ga0310912_105761171	3300031941	Soil	RFWLFLLGALTAGIFWIGIYVGVSYFLGEEIAKVVGKIGTKALIGVIVLVVAGLLIRAGVAKWRAGRQARLAGQDPAKVEATRD
Ga0306922_110371031	3300032001	Soil	AGIFWIGIYVGVSYFLGEEIAKVVGKIGAKAVIAVIVLVVAGLLIRAGVSKWRAARQARLAEQDPRKVEATQD
Ga0306922_120837671	3300032001	Soil	LLGAMTAGIFWIGIYVGVSYFLGEEIAKVVGAIGAKALIGVIVLVVAGLLIRAGVSKWRGARQARLAGQDPPKVEAT
Ga0318563_106899662	3300032009	Soil	TAGIFWIGIYVGVSYFLGEEIAKVVGKIGTKALIGVIVLVVAGLLIRAGVAKWRAGRQARLAGQDPAKVGATRD
Ga0318569_103991992	3300032010	Soil	FWLFLLGALAAGIFWIGIYVGVSYFLGEEIAKLVGKAGTKALIAVIVLMVVGVSIRAGLSKWRASRQARLAEQNPPKVAAA
Ga0318569_104106091	3300032010	Soil	FWLFLLGALTAGIFWIGIYVGVAYFLGEEIAKVVGKIGAKALISVIVLVVAGLLIRAGVSKWRANRQARLDVQDPPKIEATQD
Ga0318556_106628541	3300032043	Soil	LGALTAGIFWIGIYVGISYFLGEEIAKVVGKIGAKAVIAVIVLVVAGLLIRAGVSKWRAARQARLAEQDPSKVEATQD
Ga0318506_101263922	3300032052	Soil	FWIGIYVGISYLLGEEIAKLVGKIGTKALIGVITLVVVGLLIRAGLSRWRAKRQARLAGQDPPKVEAAQG
Ga0318505_101579191	3300032060	Soil	VRFWLFMLGAMAAGVFWIGIYVGISYLLGEEIAKLVGKIGTKALIGVITLVVVGLLIRAGLSRWRAKRQARLAGQDPPKVEAAQG
Ga0318510_101475232	3300032064	Soil	GIFWIGIYVGVSYLLGEEIAKVVGKIGTKALIGVIVLVVAGLLIRAGVAKWRAGRQARLAGQDPAKVGATRD
Ga0318510_102568171	3300032064	Soil	SGIFHVRFWLFLLGALTAGIFWIGIYVGVSYFLGEEIAKLVGKIGTKALIGVIVLVVVGLLIRAGVSKWRGARQARLAGQDPPKVEAT
Ga0318513_103509071	3300032065	Soil	FWIGIYVGISYFLGEEIAKVVGKIGTKALIAVIVLVVAGLLIRAGVSKWRAARQARLAEQDPRKVEATQD
Ga0318513_105936901	3300032065	Soil	SWRPRRCQPSCPASSHVRFWLFLLGAMTAGIFWIGIYVGVSYFLGEEIAKVVGAIGAKALIGVIVLVVAGLLIRAGVSKWRGARQARLAGQDPPKVEAT
Ga0318514_104062552	3300032066	Soil	FILGALAAGVFWIGIYVGISYFLGEEIAKLVGKIGTKALIGVITLVVVGLLIRAGLSKWRANRQARVAGQDPPKVEAT
Ga0318524_102094751	3300032067	Soil	FWIGIYVGVSYFLGEEIAKLVGKAGTKALIAVIVLMVVGVSIRAGLSKWRASRQARLAEQDPPKVAAA
Ga0306924_103863412	3300032076	Soil	VRFWLFLLGALTAGIFWIGIYVGVSYFLGEEIAKVVGKIGAKALLGVIVLVVVGLLIRAGVAKWRANRQARLTGQDPPKVGATQG
Ga0306924_124503272	3300032076	Soil	WLFLLGALVAGIFWIGIYVGTSYLLGEEIAKLVGKIGTKALIGVILLVVVGLSIRAGLSKWRANRQARLAAQAPAPAP
Ga0307471_1036849341	3300032180	Hardwood Forest Soil	RVRFWLFLLGALVAGVFWIGIYVGISYVLGEEIAKLVGKIGTKALIGVIILVVVGLLIRAGLSKWRANRQARLAGQAPAGG
Ga0307472_1019587222	3300032205	Hardwood Forest Soil	VSGIFHVRFWLFLLGALSAGIFWIGIYVGVSYFLGEEIAKLVGKIGTKALIGVIVLVVVGLLIRAGVSKWRGARQARLAD
Ga0306920_1002640931	3300032261	Soil	WLFMLGALAAGVFWIGIYVGISYLLGEEIAKLVGKIGTKALIGVIILVVAGLLIRAGLSKWRANRQARVAEAGPAQG
Ga0306920_1026559491	3300032261	Soil	GIFHVRFWLFLLGALTAGIFWIGIYVGVAYFLGEEIAKVVGKIGAKALISVIVLVIAGLLIRAGVSKWRASRQARLDVQDPPKIEATQD
Ga0335079_104160474	3300032783	Soil	VSGIFHVRFWLFLLGALTAGIFWIGIYVGVSYFLGEEIAKLVGKIGAKALTGVIVLVVAGLLIRAGMSKWRANREARLAGQDPPKVEATQG
Ga0335081_102917311	3300032892	Soil	FHVRFWLFMLGALTAGVFWIGIYVGISYLLGAEIAKLVGKAGTKALIGAIMLVAVWLLIKAGLSKWRANRQAGLAEPDPATIEATQD
Ga0335069_115005541	3300032893	Soil	AGIFWIGIYVGVSYFLGEEIARLVGKIGTKALIGVIVLVVAGLLIRAGLSKWRGARQARLAEQ
Ga0335071_104345142	3300032897	Soil	VFWIGIYVGISYLLGEEIAKLVGTAGTKALIGAITLVVVWLLIKAGWSKWRASHQAGLAEPDPAAIKATQD
Ga0335073_112344911	3300033134	Soil	GALTAGIFWIGIYVGVSYFLGAEIAKLVGKIGTKALIGVIVLVVVGLLIRAGVSKWRGARQARLAG
Ga0318519_109672762	3300033290	Soil	IFWIGIYVGTSYLLGEEIAKLVGKIGTKALIGVILLVVVGLSIRAGLSKWRANRQARLAAQAPAPAP
Ga0314866_100912_2_208	3300033807	Peatland	IGIYVGVSYFLGEEIAKLVGKAGTKLLISVIVLVVAGLLIRAGVSKWRAARQARLAAQDPPKIEATSD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101652

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences