NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F101637

Metagenome / Metatranscriptome Family F101637

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F101637
Family Type Metagenome / Metatranscriptome
Number of Sequences 102
Average Sequence Length 77 residues
Representative Sequence MRKRLIHTILLAGFLCAPAFAQRVEIFGGAQYEHLQSSYNAVGWNASLTGNFKHVLGITGDFSGVYNSHRTNSSVYTYT
Number of Associated Samples 89
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 100.00 %
% of genes near scaffold ends (potentially truncated) 3.92 %
% of genes from short scaffolds (< 2000 bps) 2.94 %
Associated GOLD sequencing projects 82
AlphaFold2 3D model prediction Yes
3D model pTM-score0.27

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (96.078 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil
(7.843 % of family members)
Environment Ontology (ENVO) Unclassified
(38.235 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(49.020 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 32.71%    β-sheet: 0.00%    Coil/Unstructured: 67.29%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.27
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 102 Family Scaffolds
PF13180PDZ_2 6.86
PF13505OMP_b-brl 5.88
PF00486Trans_reg_C 2.94
PF00691OmpA 1.96
PF13365Trypsin_2 1.96
PF03734YkuD 0.98
PF13590DUF4136 0.98
PF00326Peptidase_S9 0.98
PF13618Gluconate_2-dh3 0.98
PF10009DUF2252 0.98
PF04366Ysc84 0.98
PF12704MacB_PCD 0.98
PF00069Pkinase 0.98
PF02321OEP 0.98
PF05974DUF892 0.98
PF13581HATPase_c_2 0.98
PF00589Phage_integrase 0.98
PF03692CxxCxxCC 0.98
PF03544TonB_C 0.98
PF13565HTH_32 0.98
PF01116F_bP_aldolase 0.98
PF01557FAA_hydrolase 0.98
PF12682Flavodoxin_4 0.98
PF00072Response_reg 0.98

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 102 Family Scaffolds
COG0515Serine/threonine protein kinaseSignal transduction mechanisms [T] 3.92
COG1538Outer membrane protein TolCCell wall/membrane/envelope biogenesis [M] 1.96
COG0191Fructose/tagatose bisphosphate aldolaseCarbohydrate transport and metabolism [G] 0.98
COG0810Periplasmic protein TonB, links inner and outer membranesCell wall/membrane/envelope biogenesis [M] 0.98
COG1376Lipoprotein-anchoring transpeptidase ErfK/SrfKCell wall/membrane/envelope biogenesis [M] 0.98
COG2930Lipid-binding SYLF domain, Ysc84/FYVE familyLipid transport and metabolism [I] 0.98
COG3034Murein L,D-transpeptidase YafKCell wall/membrane/envelope biogenesis [M] 0.98
COG3685Ferritin-like metal-binding protein YciEInorganic ion transport and metabolism [P] 0.98


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A96.08 %
All OrganismsrootAll Organisms3.92 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300010043|Ga0126380_10417537All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1003Open in IMG/M
3300012960|Ga0164301_10429902All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium933Open in IMG/M
3300019882|Ga0193713_1048627All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1221Open in IMG/M
3300032205|Ga0307472_100000232All Organisms → cellular organisms → Bacteria17969Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil7.84%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil7.84%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil7.84%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil7.84%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere6.86%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere4.90%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil3.92%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil3.92%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere3.92%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere3.92%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil2.94%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil2.94%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil2.94%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere2.94%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere2.94%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere2.94%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere2.94%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere2.94%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.96%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere1.96%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.96%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.98%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil0.98%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere0.98%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland0.98%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.98%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil0.98%
Host-AssociatedHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated0.98%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere0.98%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.98%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.98%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.98%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere0.98%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2088090014Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000789Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300001139Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soilEnvironmentalOpen in IMG/M
3300004633Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBioEnvironmentalOpen in IMG/M
3300004799Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-3 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300005329Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaGEnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005338Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2Host-AssociatedOpen in IMG/M
3300005436Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaGEnvironmentalOpen in IMG/M
3300005439Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaGEnvironmentalOpen in IMG/M
3300005547Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaGEnvironmentalOpen in IMG/M
3300005616Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2Host-AssociatedOpen in IMG/M
3300005618Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2Host-AssociatedOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005844Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2Host-AssociatedOpen in IMG/M
3300006041Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014EnvironmentalOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300006852Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2Host-AssociatedOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300006881Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2Host-AssociatedOpen in IMG/M
3300009101Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaGHost-AssociatedOpen in IMG/M
3300009174Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaGHost-AssociatedOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300010043Tropical forest soil microbial communities from Panama - MetaG Plot_26EnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010396Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300012200Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012469Combined assembly of Soil carbon rhizosphereHost-AssociatedOpen in IMG/M
3300012512Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.3.old.270510Host-AssociatedOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012912Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2EnvironmentalOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300012957Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MGEnvironmentalOpen in IMG/M
3300012958Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MGEnvironmentalOpen in IMG/M
3300012960Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MGEnvironmentalOpen in IMG/M
3300013105Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaGHost-AssociatedOpen in IMG/M
3300014166Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015EnvironmentalOpen in IMG/M
3300014969Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaGHost-AssociatedOpen in IMG/M
3300015245Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300016357Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000EnvironmentalOpen in IMG/M
3300016404Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082EnvironmentalOpen in IMG/M
3300018064Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MGEnvironmentalOpen in IMG/M
3300019882Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a2EnvironmentalOpen in IMG/M
3300020078Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300020080Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021168Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-MEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300025321Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025898Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025904Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025905Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025916Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025920Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025923Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025924Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025925Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025926Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025930Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)EnvironmentalOpen in IMG/M
3300025938Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025941Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025960Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025961Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026035Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026078Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026088Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300027516Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 34 (SPAdes)EnvironmentalOpen in IMG/M
3300027680Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80 (SPAdes)EnvironmentalOpen in IMG/M
3300027874Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300029636Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031057Oak Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031474Fir Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031716Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3EnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300031947Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000HEnvironmentalOpen in IMG/M
3300032001Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300033412Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NCEnvironmentalOpen in IMG/M
3300034090Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00NEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
GPIPI_022508802088090014SoilMRIRLIHTILLAGFLCAPAFAQRVEIFGGAQYEHLQSSYNAVGWNASLTGNFKHVLGITGDLSGVYNSHRTNSSVYTYTVGPVLTAR
JGI1027J11758_1288578733300000789SoilMKAKAIHTIMVAVLLCPAVFAQRVELFGGATFEHLQSSYNAVGWNASLTGNFKHVLGITGDFSGVY
JGI10220J13317_1126371813300001139SoilMRNHFINTILISCFLCAPVSAQKVEIFGGAQYEHLQSSYNAVGWNASLTGNFKHVLGITADFSGVYNSRRASSSVYTYTIGPVLT
Ga0066395_1077433113300004633Tropical Forest SoilMIRTSLVAILLCPLALAQRVEIFGGAQFEHLQSSYNAVGWNASLTGNFKHVLGITGDFSGVYNSHRSNSSV
Ga0058863_1085186323300004799Host-AssociatedMTTKGMKAILVALLLSSTAFSQKVEIYGGAQYTHLESRYNAVGWNGSVTGNFKHVLGITADFSG
Ga0070683_10152982813300005329Corn RhizosphereMRKHFINTILIAGVLCTAVFAQKVEMFGGAQYEHLQPSYNAVGWNAALTGNFKHVLGITADFSGVYNSRRTSSSVYTYTFGPVLTARL
Ga0066388_10003900063300005332Tropical Forest SoilMKNIMVLALLIAVILCAPSFAQRVEIFGGAQFEHLQSTYNAVGWNASLTGNFKHVLGITGDFSGVYNSRRSN
Ga0066388_10089088013300005332Tropical Forest SoilMTKRLIHTILLAGFLCAPTFAQRVEVFGGAQYEHLQSSYNAVGWNASLTGNFKHVLGITGDFSGVYNSHRT
Ga0066388_10391113313300005332Tropical Forest SoilMTKRLIHTILLAGFLCSPAFAQRVEIFGGAQYEHLQSNYNAVGWNASLTGNFKHVLGITGDFSGVYNSHRTSSSVYTYTVGPVLT
Ga0068868_10052023423300005338Miscanthus RhizosphereMRKHFINTILIAGVLCTAVFAQKVEMFGGAQYEHLQPSYNAVGWNAALTGNFKHVLGITADFSGVYNSRRTSSS
Ga0070713_10048947013300005436Corn, Switchgrass And Miscanthus RhizosphereMKTQIIRTILLAGLLCTPALAQRVEIYGGGQYEHLQPSFNAVGWNGSLTGNFKHVLGITADFSGVYKSHRTDSSVYTYTVGPVLTAR
Ga0070711_10123693713300005439Corn, Switchgrass And Miscanthus RhizosphereMKTQIIRTILLAGLLCTPALAQRVEIYGGGQYEHLQPSFNAVGWNGSLTGNFKHVLGITADFSGVYKSHRTDSSVYTYTVGPVLTARL
Ga0070693_10013365033300005547Corn, Switchgrass And Miscanthus RhizosphereMKKQVVHVMLFVLLLCAPVLSQRVEIYGGAQFEHLQSSYNAAGWNAALTGNFKHVLGITADFSGVYNSVRTDSSVY
Ga0068852_10097343113300005616Corn RhizosphereMRKHFINTILIAGVLCTAVFAQKVEMFGGAQYEHLQPSYNAVGWNAALTGNFKHILGITADFSGVYNSRRTSSSVYTYTFGPVLTARLPVVQPFVH
Ga0068864_10159361113300005618Switchgrass RhizosphereLLGEDLMRNHFINTILISCFLCAPVSAQKVEIFGGAQYEHLQSSYNAVGWNASLTGNFKHVLGITADFSGVYNSRRAISSVYTYTIGPVLTARLPVVQ
Ga0066903_10345624213300005764Tropical Forest SoilMKNIMVLALLIGVILCAPSFAQRVEIFGGAQFEHLQSTYNAVGWNASLTGNFKHVLGITGDFSGVYNSRRSNSSV
Ga0068862_10001065713300005844Switchgrass RhizosphereMKKQVVHVMLFVLLLCAPVLSQRVEIYGGAQFEHLQSSYNAAGWNAALTGNFKHVLGITADFSGVYNSVRTDSSVYTFTAGPVLTARLP
Ga0075023_10052651213300006041WatershedsMRKRLIHTILLAGFLCAPAFAQRVEIFGGAQYEHLQSSYNAVGWNASLTGNFKHVLGITGDFSGVYNSHRTNSSVYTYT
Ga0070712_10067323223300006175Corn, Switchgrass And Miscanthus RhizosphereMRKRLIHTILLAGFLCAPAFAQRVEIFGGAQYEHLQSSYNAVGWNASLTGNFKHVLGITGDLSGVYNSHRTNSSVYTYTV
Ga0075433_1032597233300006852Populus RhizosphereMKKTSIHTIAVIGLLYAHAFAQRVEIFGGAQFEHLQSSYNAVGWNVSLTGNFKHVLGITGDFSGVYKSRNAGSSVYTYTVGPVLSARLPVVQPF
Ga0075434_10026666713300006871Populus RhizosphereMGKQLLYTILISGFLCASALAQRVEFFGGAQYEHLESSYNAVGWNASLTGNFKHVLGITGDVSGVYNSHRINSSVYTYAIGP
Ga0068865_10076661923300006881Miscanthus RhizosphereMTKPLILTILLAGFLCAPAFAQRVEIFGGAQYEHLQSSYNAVGWNASMTGNFKHVLGVTGDFSGVYNSHRT
Ga0105247_1040145323300009101Switchgrass RhizosphereMTTKGMKAILVALLLSSTAFSQKVEIYGGAQYTHLESRYNAVGWNGSVTGNFKHVLGITADFSGVYSSHRVNSSTYTYTVGPVLTA
Ga0105241_1220605323300009174Corn RhizosphereMRNHFINTILISCALCAPVSAQKVEIFGGAQYEHLQSSYNAVGWNASLTGNFKHVLGITADFSGVYNSRR
Ga0105249_1205948823300009553Switchgrass RhizosphereMRKHFINTILIAGVLCTAVFAQKVEMFGGAQYEHLQPSYNAVGWNAALTGNFKHVLGITADFSGVYNSRRA
Ga0126380_1041753733300010043Tropical Forest SoilMKNTVIRISVVTLILCASSFAQRVEIFGGAQFEHLQSAYNAVGWNASLTGNFKHVLGITGDFSGVYNSR
Ga0126382_1242710113300010047Tropical Forest SoilMRKRLIPTILLAGFLCAPAFAQRVEFFAGAQYEHLQSRHNAVGWNASLPGNFKHVLGTTGDFSGVYNS
Ga0126373_1009050553300010048Tropical Forest SoilMKKIMIRTILIATLLCPLALAQRVEIFGGAQFEHLQSSYNAVGWNASLTGNFKHVLGITGDFSGVYNS
Ga0126370_1109833213300010358Tropical Forest SoilMNKHIIYAILLTGLLCTPAFGQRVEIYGGAQYEHLQPSFNAAGWNASLTGNFKHVLGITADFSGVYNSRRVSSSVYTYTVGP
Ga0126372_1229110013300010360Tropical Forest SoilMRKLLLQAILLAELLSAPAFAQRVELFGGAQFEHLQSSYNAVGWNASLTGNFKHVLGITGDFSGAY
Ga0126372_1309163713300010360Tropical Forest SoilMTKRLIHTILIAGFICAPAAAQRVEIFGGAQYEHLQSSYNAVGWNASLTGNFKHVLGITGDFGGVYNSHRTNSSVYT
Ga0126372_1311736123300010360Tropical Forest SoilMTKRLIHTILLAGFLCAPAFAQRVEIFGGAQYEHLQSSYNAVGWNASLTGNFKHVLGITGDFSGVYNSRTTSSSVYTYTVGP
Ga0134126_1271030613300010396Terrestrial SoilMKKQVVHVMLFVLLLCAPVLSQRVEIYGGAQFEHLQSSYNAAGWNAALTGNFKHVLGITADISGVYNSVRTDSSVYTF
Ga0134123_1171055813300010403Terrestrial SoilMTKPLILTILLAGFLCAPAFAQRVEIFGGAQYEHLQSSYNAVGWNASLTGNFKHVLGITGDFSGVYNSHRT
Ga0137382_1135807013300012200Vadose Zone SoilMGKQLLYTILISGFLCASAFAQRVEFFGGAQYEHLESRYNAVGWNASLTGNFKHVLGITGDVSGVYNSHRINSSVY
Ga0150984_11243485823300012469Avena Fatua RhizosphereMRKQIIHTILFTGVLLVPAFGQRVEIFGGAQYEHLQSSYNAVGWNASLTANFKHVLGITGDFSGVYNSRRQNSSVYTYTVGPVLT
Ga0157327_106233623300012512Arabidopsis RhizosphereMKKQVVHVMLFVLLLCAPVLSQRVEIYGGAQFEHLQSSYNAAGWNAALTGNFKHVLGITADFSGVYNSVRTDSSVYTFTAGPVLTARLPV
Ga0137397_1042748423300012685Vadose Zone SoilMAVLTGLLSAPAFAQRVEIFGGAQFEHLQSSYNAVGWNASVTGNFKHVLGITGDFSGVYNSRRLNSSVYTYTVGPVLTARL
Ga0157306_1014503323300012912SoilMTKRLILTILLAGFLCASAFTQRLGIFGGAQYEHLQSSYNAVGWNASLTGNFKHVLGITGDFSGVYNS
Ga0126375_1134796813300012948Tropical Forest SoilMTDRLMLIILLVGVLCAPSFAQRVELYGGAQFEHLQSSYNAIGWNASVTGNFKHVVGITGDFSGVYNSHRSDSSIYTYTV
Ga0164303_1131068723300012957SoilMTTKGMKAILVALLLSSTAFSQKVEIYGGAQYTHLESRYNAVGWNGSVTGNFKHVLGITADFSGVYSSHRVNSS
Ga0164299_1024452213300012958SoilMRKLIFMSLLAGFLSTPALAQRVEIFGGAQFEHLQSSYNAAGWNASLTGNFKHVLGITGDFSGVYNSRRGSSSVYTYTV
Ga0164301_1042990223300012960SoilMRKRLIHAILLAGFLCAPAFAQRVEIFGGAQYEHLQSSYNAVGWNASLTGNFKHVVGITGDLSGVYNSHRTNASVYTYT
Ga0164301_1127170313300012960SoilMRNHFINTILIAGVLCAPLFAQKVEIFGGAQYEHLQSSYNAVGWNASLTGNFKHVLGITADFSGVYNSRRTSSSVYTYTF
Ga0157369_1111295113300013105Corn RhizosphereMIRAVIGTILLLGLLRLQGVAQGIELYGGAQYAHLQPSYNAFGWNAAITGNFKHVLGITGDVSGVYKSKITN
Ga0134079_1025639913300014166Grasslands SoilMIRDTIGAILFLGALCMQGFAQKVELYGGAQYEHLQPSYNAFGWNAAITGNFKHVLGITGDVSG
Ga0157376_1000680313300014969Miscanthus RhizosphereMRKRLIHTILLAGFLCAPAIAQRVEIFGGAQYEHLQSSYNAVGWNASLTGNFKHVLGITGDLSGVYNSHRTNSSVY
Ga0157376_1020692343300014969Miscanthus RhizosphereMNALLTVLVLAILCCTPAFSQRVELYGGAQYEHLESSYNAVGWNASVTGNFKHVLGITADFSGVYNSRGANSSVYTYTIGPV
Ga0157376_1087669213300014969Miscanthus RhizosphereMKKQVVHAMLFALLLCAPVVAQRVEIYGGAQFEHLQSSYNAAGWNASLTGNFKHVLGITADFSGVYNSRLTDSSVY
Ga0137409_1112299723300015245Vadose Zone SoilMRKHVIHTILLAGVLCASAFAQRVEIFGGAQFEHLQPSYNAAGWNASVTGNFKHVLGITGDFSGVYNS
Ga0132258_1011958983300015371Arabidopsis RhizosphereMKKQVVHAMLFALLLCAPVVAQRVEIYGGAQFEHLQSSYNAAGWNASLTGNFKHVLGITADFSGVYNSRLTDSSVYTF
Ga0132258_1249539033300015371Arabidopsis RhizosphereMRKQVVHVMLFALLLCAPVLAQRVEIFGGAQFEHLQSSYNAAGWNASLTGNFKHVLGITADFSGVYNSRLTDSSVY
Ga0132257_10082061133300015373Arabidopsis RhizosphereMRKRLMHTILLAGFLCAPASAQRVEMFGGAQYEHLQSSYNAVGWNASLTGNFKHVLGITGDLSGVYNSHRTNSSVYTYTVGPVLTARLPVVQ
Ga0182032_1096449023300016357SoilMTKLLIHTILIAGFICAPAAAQRVEIFGGAQYEHLQSTYNAVGWNASLTGNFKHVLGITGDFGGVYNSHRTNSSVYTYTIGPV
Ga0182037_1044094013300016404SoilMRKLLLQAILFGGLLSAPAFAQRVELFGGAQFDHLQPSYNAVGWNASLTGNFKHVLGITGDFSG
Ga0187773_1060232313300018064Tropical PeatlandMRKQVLPTLLLVGVIGTAAFAQRVEIFGGAQFEHLQPSYNAAGWNASLTGNFKHVLGITGDFGGVYNSRLANS
Ga0193713_104862723300019882SoilMKKQVIHTILLAGLLCAPAFAQRVEIFGGAQFEHLQSSYNAVGWNGSVTGNFKHVLGITGDFSGVYKSRVTDSSVYTYTVGPVLTARLPVVQ
Ga0206352_1073609213300020078Corn, Switchgrass And Miscanthus RhizosphereMKAILVALLLSSTAFSQKVEIYGGAQYTHLESRYNAVGWNGSVTGNFKHVLGITADFSGVYSSHR
Ga0206350_1042835723300020080Corn, Switchgrass And Miscanthus RhizosphereMRNHFINTILISCFLCAPVSAQKVEIFGGAQYEHLQSSYNAVGWNASLTGNFKHVLGITADFSGVYNSRR
Ga0210399_1016685943300020581SoilMRNHFINPILIACVLCAPVFAQKVEIFGGAQYEHLQSSYNAVGWNTSLTGNFKHVLGITADFSGVYNS
Ga0210401_1131480213300020583SoilMRKRLIHTILLAGFLCAPAFAQRVEIFGGAQYEHLQSSYNAVGWNASLTGNFKHVLGITGDLSGVYN
Ga0210406_1018503213300021168SoilMRKRLIRTILLAGFLCAPAFAQSVEIFGGAQYEHLQSSYNAVGWNASLTGNFKHVLGITGDLSG
Ga0210406_1057070113300021168SoilMRKRLIHTILLAGFLCAPAFAQRVEIFGGAQYEHLQSSYNAVGWNASLTGNFKHVLGITGDLSGVYNSHRTNSSVYTYTVGPVLT
Ga0210387_1097782823300021405SoilMRNHFINPILIACVLCAPVFAQKVEIFGGAQYEHLQSSYNAVGWNTSLTGNFKHVLGITADFSGVYNSRRTSSSV
Ga0207656_1005658213300025321Corn RhizosphereMRNHFINTILVSCFLCAPVSAQKVEIFGGAQYEHLQSSYNAVGWNASLTGNFKHVLGITADFSGVYNSRRASSSVYTY
Ga0207692_1081392413300025898Corn, Switchgrass And Miscanthus RhizosphereMRGHFISTILIACVLCAPVFAQRVEIFGGPQYEHLQSSYNAVGWNASLTGNFKHVLGITADFSGVYNSRRASSSV
Ga0207647_1014894323300025904Corn RhizosphereMRNHFINTILISCFLCAPVSAQKVEIFGGAQYEHLQSSYNAVGWNASLTGNFKHVLGITADFSGVYNSRRASSS
Ga0207685_1058196623300025905Corn, Switchgrass And Miscanthus RhizosphereMRKRLIHTILLAGFLCAPAFAQRVEIFGGAQYEHLQSSYNAVGWNASLTGNFKHVLGITGDLSGVYNSHRTNSSVY
Ga0207663_1086016723300025916Corn, Switchgrass And Miscanthus RhizosphereMRDHVINTILIACLLCAPVFAQKVEIFGGAQYEHLQSSYNAVGWNASLTGNFKHVLGITADFSGVYNSRRT
Ga0207649_1060614933300025920Corn RhizosphereMTNRGMKLIFVALFLSGSAFSQKVEIYGGAQYTHLESRYNAVGWNGSVTGNFKHVLGITADFSGVYSSHRVNSST
Ga0207681_1035935133300025923Switchgrass RhizosphereMKKQVVHVMLFVLLLCAPVLSQRVEIYGGAQFEHLQSSYNAAGWNAALTGNFKHVLGITADFSGVYNSVRTDSSVYTFTAGPVLTARLPVVQ
Ga0207694_1033259633300025924Corn RhizosphereMTNRGMKLIFVALFLSGSAFSQKVEIYGGAQYTHLESRYNAVGWDGSVTGNFKHVLGITADFSGVYNSHRI
Ga0207694_1054828323300025924Corn RhizosphereMRKHFINTILIAGVLCTAVFAQKVEMFGGAQYEHLQPSYNAVGWNAALTGNFKHVLGITADFSGVYNSRRTSSSVYTYTFGPVLTARLPVVQPFV
Ga0207650_1166565513300025925Switchgrass RhizosphereMTTKGMKAILVALLLSSTAFSQKVEIYGGAQYTHLESRYNAVGWNGSVTGNFKHVLGITADFSGVYSSHRVNSSTYTYTV
Ga0207659_1148797413300025926Miscanthus RhizosphereMRNHFINTILISCFLCAPVSAQKVEIFGGAQYEHLQSSYNAVGWNASLTGNFKHVLGITADFSGVYNSRRASS
Ga0207701_1066577723300025930Corn, Switchgrass And Miscanthus RhizosphereMKKQVVHVMLFVLLLCAPVLSQRVEIYGGAQFEHLQSSYNAAGWNAALTGNFKHVLGITADFSGVYNSVRTDSSVYTFTAGP
Ga0207704_1030014213300025938Miscanthus RhizosphereMTKPLILTILLAGFLCAPAFAQRVEIFGGAQYEHLQSSYNAVGWNASMTGNFKHVLGITGDFSGVYNSHRTNSS
Ga0207711_1056960313300025941Switchgrass RhizosphereMTNRGMKLIFVALFLSGSAFSQKVEIYGGAQYTHLESRYNAVGWDGSVTGNFKHVLGITADFSGVYNS
Ga0207711_1072455023300025941Switchgrass RhizosphereMRKRLIHTILLAGFLCPSAFAQRVEIFGGAQYEHLQSSYNAVGWNASLTGNFKHVLGITGDLSGVYNSHRTNSSVYTYTVGPV
Ga0207651_1039276233300025960Switchgrass RhizosphereMKAILVALLLSSTAFSQKVEIYGGAQYTHLESRYNAVGWNGSVTGNFKHVLGITADFSGVYSSHRVNSSTYTYTVGPV
Ga0207712_1200502713300025961Switchgrass RhizosphereMRKRLIHTILLAGFLCPSAFAQRVEIFGGAQYEHLQSSYNAVGWNASLTGNFKHVLGITGDLSGVYNSHRTNSSVYTY
Ga0207703_1119954513300026035Switchgrass RhizosphereMTKPLILTILLAGFLCAPAFAQRVEIFGGAQYEHLQSSYNAVGWNASLTGNFKHVLGITGDFSGVYNSHRTNSSVYTYTVG
Ga0207702_1010105013300026078Corn RhizosphereMKKQVVHVMLFVLLLCAPVLSQRVEIYGGAQFEHLQSSYNAAGWNASLTGNFKHVLGITADFSGVYNSVRTDSSVYTFT
Ga0207641_1257756213300026088Switchgrass RhizosphereMTKPLILTILLAGFLCAPAFAQRVEIFGGAQYEHLQSSYNAVGWNASLTGNFKHVLGITGDFSGVYNSHRTNSSVYTYTV
Ga0207761_112543013300027516Tropical Forest SoilMRIPGSAIARVLAFGLLSVSAFAQRVEIFGGAQFEHLQSSYNAIGWNASLTGNFKHVLGITGDFSGVYNSHRYSSSVYTYTFGPV
Ga0207826_109661113300027680Tropical Forest SoilMAKQFMSTILLAGMLCLPALAQRVELFGGAQFEHLQPAYNAVGWNASLTGNFKHVLGITGDFSGVYKTHSSVYTYTFGPVLSARLPVV
Ga0209465_1040578113300027874Tropical Forest SoilMKTKMIRTSLVAILLCPLALAQRVEIFGGAQFEHLQSSYNAVGWNASLTGNFKHVLGITGDFSGVYNSHRSNSSVYTYTIGPV
Ga0222749_1028839213300029636SoilMKKLIMHTILLGGLLCALAFAQRVEIYGGAQFEHLQSSYNAVGWNGSLTGNFKHVLGITADFSGVYKSH
Ga0222749_1053963413300029636SoilMRKLKLHTVLLAMLLCTPALAQRVEIFGGAEFEHLQSSYNAVGWNGSLTGNFKHVLGVTGDFSGVYNSHRGN
Ga0170834_11401974313300031057Forest SoilMRKQLVSTILLVGFLYAPAFAQRVEIFGEAQYEHLQSSYNAVGWNASLTGNFKHVLGITGDFSGAYTSHRTNSTVYTYTVASVIHSAPAGCSAL
Ga0170824_10607761823300031231Forest SoilMRKQLVSTILLVGFLYAPAFAQRVEIFGEAQYEHLQSSYNAVGWNASLTGNFKHVLGITGDFSGAYTSHRTNSTVYT
Ga0170818_10526027713300031474Forest SoilMRDHFINIILIASVLCPPIFAQKVEIFGGAQYEHLQPSYNAVGWNASLTGNFKHVLGITADFSGVYNSRRTSSSVYTYTFGP
Ga0310813_1231278313300031716SoilMRKQVTHAILLFGVLCAPAFAQRVEIFGGAQYEHLQSNYNAVGWNASLTGNFKHVLGITGDFSGVYNSRRANSSVYTYTV
Ga0307475_1103178323300031754Hardwood Forest SoilMRKRIIHTILLTGFLCAPTFAQGVEIFGGAQYEHQQPSYNAVGWNASLTGNFKHVLGITGDFSGV
Ga0310909_1062438613300031947SoilMTKRLIHTILIAGFICAPAAAQRVEIFGGAQYEHLQSTYNAVGWNASLTGNFKHVLGITGDFGGVYNSHRTNSSVYT
Ga0306922_1043188623300032001SoilMFALALWAPAFAQRVEIFGGAQFEHLQSSYNAVGWNASLTGNFKHVLGITGDFSGVYNSHRASSSV
Ga0307471_10017993923300032180Hardwood Forest SoilMKKQFIFTALFAGLLYTPALAQRVEIFGGAQFEHSQPSYNAVGWNASLTGNFKHVLGITGDFSGVYNSHQTTSSVYTYTVGPVL
Ga0307471_10179195523300032180Hardwood Forest SoilMRKQVIYTILVAGVLCAPAFAQRVELFGGAQFEHLQSSYNGVGWNVSLTRNFKYGLGITGDFSGVY
Ga0307472_10000023213300032205Hardwood Forest SoilMRKRLMPTVLLAGLLYTPVFAQRGEIFGGAQFEHLQPRYNAVGWNASLTGNFKHVLGITGDVSGVYNSRRSNSSVYTYTV
Ga0306920_10235007423300032261SoilMKKQIRVVLIVGMLCAGAWAQRVEIFGGAQFEHLQSSYNAVGWNASLTGNFKHILGITGDFSGVYNSRRSSSSVYTYTVGPVLTARLPVVQP
Ga0310810_1022948913300033412SoilMGKQLLYTILISGFLCASALAQRVEFFGGAQYEHLESSYNAVGWNASLTGNFKHVLGITGDVSGVYNSHRINSSVYTYAIGPVLTARLPVVQP
Ga0326723_0230177_601_8223300034090Peat SoilMWKQVTHTLLVAGVLCAPAFAQRGEIFGGAQFEHLQSSYNAVGWNASLTRNFKYGLGITGDFSGVYNSRGANSS


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