Metagenome / Metatranscriptome Family F101605

Basic Information
Family ID	F101605
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	63 residues
Representative Sequence	RISNLSKRYAAWALIDRDVMKKQAPLAPLFFRTVREFTSKRVGCYSYQPIYAVMNFNAVCIK
Number of Associated Samples	87
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	94.12 %
% of genes from short scaffolds (< 2000 bps)	88.24 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	No

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (57.843 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (39.216 % of family members)
Environment Ontology (ENVO)	Unclassified (40.196 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (41.176 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90 1A3PFW1_101452801 2A1565W1_106373511 3A2065W1_115608722 4Ga0062589_1009714231 5Ga0063356_1015936622 6Ga0068868_1020269012 7Ga0070668_1002804771 8Ga0070668_1016243671 9Ga0070669_1005511722 10Ga0070694_1011115002 11Ga0070697_1016216122 12Ga0070695_1001023293 13Ga0070696_1005606272 14Ga0070696_1011372582 15Ga0066698_106765082 16Ga0068855_1000345371 17Ga0070702_1013304732 18Ga0070712_1015805541 19Ga0068865_1007196331 20Ga0099827_108664452 21Ga0099827_118007711 22Ga0105240_111672141 23Ga0105245_104669911 24Ga0105245_131614011 25Ga0105243_101733143 26Ga0105241_115558342 27Ga0105242_130225152 28Ga0126313_109798782 29Ga0126314_101164183 30Ga0126306_101915201 31Ga0134125_110948441 32Ga0134126_107932602 33Ga0137374_1000070637 34Ga0137374_102926132 35Ga0137377_113455231 36Ga0137366_107628411 37Ga0157328_10268292 38Ga0157355_10048101 39Ga0157341_10423602 40Ga0157353_10001774 41Ga0157332_10486772 42Ga0157330_10181202 43Ga0164300_103349952 44Ga0164305_118553732 45Ga0157372_113464182 46Ga0120172_10880831 47Ga0120181_10571661 48Ga0173483_105495852 49Ga0173483_107027661 50Ga0184620_101063942 51Ga0184617_11665932 52Ga0184635_104055012 53Ga0184641_14736392 54Ga0193704_10927422 55Ga0193705_10323832 56Ga0193705_10721492 57Ga0193715_10565672 58Ga0193715_11039332 59Ga0193718_11184041 60Ga0193734_10313962 61Ga0193745_10845341 62Ga0193745_11108201 63Ga0210381_104000491 64Ga0210382_102458251 65Ga0224452_11941042 66Ga0207688_107042561 67Ga0207654_109735692 68Ga0207681_109826812 69Ga0207687_106885781 70Ga0207706_100960963 71Ga0207706_104797042 72Ga0207686_111728472 73Ga0207667_106319521 74Ga0268264_114391912 75Ga0247818_107075552 76Ga0307303_101557512 77Ga0307311_100272081 78Ga0307307_100991482 79Ga0307307_102613511 80Ga0307315_102289631 81Ga0307315_102643821 82Ga0307319_101338542 83Ga0307280_101512732 84Ga0307280_101922591 85Ga0307282_104389361 86Ga0307290_100619401 87Ga0307287_100344021 88Ga0307284_101435322 89Ga0247825_113273611 90Ga0307302_102707271 91Ga0307296_100012071 92Ga0307296_101019461 93Ga0307312_102982572 94Ga0307314_100017677 95Ga0307300_101790902 96Ga0307300_102250931 97Ga0307304_100308123 98Ga0308201_100635001 99Ga0308204_100446421 100Ga0307501_101119872 101Ga0308176_104319852 102Ga0370541_009530_1_186
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90 1A3PFW1_101452801 2A1565W1_106373511 3Ga0062589_1009714231 4Ga0099827_108664452 5Ga0099827_118007711 6Ga0105245_131614011 7Ga0126313_109798782 8Ga0137366_107628411 9Ga0193734_10313962
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90 1A3PFW1_101452801 2A1565W1_106373511 3Ga0062589_1009714231 4Ga0099827_108664452 5Ga0099827_118007711 6Ga0105245_131614011 7Ga0126313_109798782 8Ga0137366_107628411 9Ga0193734_10313962
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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 51.61% β-sheet: 3.23% Coil/Unstructured: 45.16%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF00126	HTH_1	31.37
PF03466	LysR_substrate	20.59
PF00528	BPD_transp_1	13.73
PF00005	ABC_tran	1.96
PF13185	GAF_2	0.98
PF02874	ATP-synt_ab_N	0.98
PF13490	zf-HC2	0.98

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	42.16 %
Unclassified	root	N/A	57.84 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	42.16 %
Unclassified	root	N/A	57.84 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	42.16 %
Unclassified	root	N/A	57.84 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	38.24 %
Unclassified	root	N/A	57.84 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	27.45 %
Unclassified	root	N/A	57.84 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	9.80 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.98 %
Unclassified	root	N/A	57.84 %

Name	Rank	Taxonomy	Distribution
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.98 %
Unclassified	root	N/A	57.84 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	9.80 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	9.80 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.98 %
Unclassified	root	N/A	57.84 %

Scaffold	Taxonomy	Length	IMG/M Link
3300001535\|A3PFW1_10145280	All Organisms → cellular organisms → Bacteria → Terrabacteria group	811	Open in IMG/M
3300001536\|A1565W1_10637351	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	759	Open in IMG/M
3300001537\|A2065W1_11560872	All Organisms → cellular organisms → Bacteria → Terrabacteria group	827	Open in IMG/M
3300004156\|Ga0062589_100971423	Not Available	790	Open in IMG/M
3300004463\|Ga0063356_101593662	Not Available	971	Open in IMG/M
3300005338\|Ga0068868_102026901	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	546	Open in IMG/M
3300005347\|Ga0070668_100280477	Not Available	1391	Open in IMG/M
3300005347\|Ga0070668_101624367	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	592	Open in IMG/M
3300005353\|Ga0070669_100551172	Not Available	961	Open in IMG/M
3300005444\|Ga0070694_101111500	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	659	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	75.49%
Host-Associated	Host-Associated	24.51%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	6.86%
Plants	Host-Associated → Plants	24.51%
Terrestrial	Environmental → Terrestrial	68.63%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	2.94%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.82%
Rhizosphere	Host-Associated → Plants → Rhizosphere	15.69%
Sediment	Environmental → Aquatic → Sediment	3.92%
Soil	Environmental → Terrestrial → Soil	68.63%

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.82%
Loam	Environmental → Terrestrial → Soil → Loam	6.86%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.94%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.88%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	61.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.92%

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.94%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.86%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.98%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	4.90%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	51.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.92%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.94%

Habitat	Taxonomy	Distribution
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	1.96%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.86%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	2.94%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.94%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	5.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.96%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	4.90%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	39.22%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.98%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.96%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	1.96%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.88%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001535	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A3-PF-15A)- 1 week illumina	Environmental	Open in IMG/M
3300001536	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A15-65cm-8A)- 1 week illumina	Environmental	Open in IMG/M
3300001537	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A20-65 cm-11A)- 1 week illumina	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M

Showing 1 to 10 of 87 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
A3PFW1_101452801	3300001535	Permafrost	LLDRDIMKNQAPMAPLFFRTTREFTSKRIGCWSYQPIYGSMNLNAVCIG*
A1565W1_106373511	3300001536	Permafrost	SRSSAASDVYKRQYFNNTILNNRMTAAGRISNLPKRYAAWALLDRDIMKNQAPMAPLFFRTTREFTSKRIGCWSYQPIYGSMNLNAVCIG*
A2065W1_115608722	3300001537	Permafrost	NNNSYFNNTILNNRMTAAGRISNLPKRYAAWALLDRDIMKNQAPMAPLFFRTTREFTSKRIGCWSYQPIYGSMNLNAVCIG*
Ga0062589_1009714231	3300004156	Soil	MQSAGRISNLSKRYQAWALIDRDVMKQQAPLAPLFFRTVREFTSKRIGCYSYQPIYAVMNFNAVCIK*
Ga0063356_1015936622	3300004463	Arabidopsis Thaliana Rhizosphere	NNNSYFNNPTFNKKMQSAGRISNLSKRYQAWALIDRDVMKQQAPLAPLFFRTVREFTSKRIGCYSYQPIYAVMNFNAVCIK*
Ga0068868_1020269012	3300005338	Miscanthus Rhizosphere	KRYAAWALIDRDVMKKQAPLAPLFFRTVREFTSKRIGCWSYQPIYGSMNLSAVCIG*
Ga0070668_1002804771	3300005347	Switchgrass Rhizosphere	NLSKRYAAWALIDRDVMKKQAPLAPLFFRTVREFTSKRIGCYSYQPIYAVMNFNAVCIK*
Ga0070668_1016243671	3300005347	Switchgrass Rhizosphere	NLSKRYAAWALIDRDVMKKQAPLAPLFFRTVREFTSKRIGCWSYQPIYGSMNLSAVCIG*
Ga0070669_1005511722	3300005353	Switchgrass Rhizosphere	MQSAGRISNLSKRYAAWALIDRDVMKKQAPLAPLFFRTVREFTSKRVGCYSYQPIYAVMNFNAVCIK*
Ga0070694_1011115002	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	YAAWALIDRDVMKKQAPLAPLFFRTVREFTSKRIGCWSYQPIYGSMNLSAVCIG*
Ga0070697_1016216122	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	YAAWALIDRDVMKKQAPLAPLFFRTVREFTSKRIGCYSYQPIYAVMNFNAVCIK*
Ga0070695_1001023293	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	SKRYAAWALIDRDVMKKQAPLAPLFFRTVREFTSKRIGCWSYQPIYGSMNLSAVCIG*
Ga0070696_1005606272	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	SKRYAAWALIDRDVMKKQAPLAPLFFRTVREFTSKRVGCYSYQPIYAVMNFNAVCIK*
Ga0070696_1011372582	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	SKRYAAWALIDRDVMKKQAPLAPLFFRTVREFTSKRVGCWSYQPIYGSMNLNAVCIG*
Ga0066698_106765082	3300005558	Soil	SNLSKRYSAWAAIDRDVMKQQAPLAPLFFRTTREFTSKRIGCWSYQPVYATMNLNAVCIG
Ga0068855_1000345371	3300005563	Corn Rhizosphere	KRYAAWALIDRDVMKKQAPLAPLFFRTVREFTSKRIGCYSYQPIYAVMNFNAVCIK*
Ga0070702_1013304732	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	DRDVMKKQAPLAPLFFRTVREFTSKRVGCYSYQPIYAVMNFNAVCIK*
Ga0070712_1015805541	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	WALIDRDVMKKQAPLAPLFFRTVREFTSKRVGCWSYQPIYGSMNLNAVCIG*
Ga0068865_1007196331	3300006881	Miscanthus Rhizosphere	DRDVMKKQAPLAPLFFRTVREFTSKRIGCWSYQPIYGSMNLSAVCIG*
Ga0099827_108664452	3300009090	Vadose Zone Soil	AAIDRDAMKNQAPMAPLFFRNVREFVAKRVGGYSYQPIYAAMNFNAVYIK*
Ga0099827_118007711	3300009090	Vadose Zone Soil	NKKMQAAGRISLPTKRYPAWAAIDRDVIKNQAPLAPLFFRNVREFVSKRIGGYAYQPIYGNMALESVYIK*
Ga0105240_111672141	3300009093	Corn Rhizosphere	SNLSKRYAAWALIDRDVMKKQAPLAPLFFRTVREFTSKRIGCWSYQPIYGSMNLSAVCIG
Ga0105245_104669911	3300009098	Miscanthus Rhizosphere	RISNLSKRYAAWALIDRDVMKKQAPLAPLFFRTVREFTSKRIGCWSYQPIYGSMNLSAVCIG*
Ga0105245_131614011	3300009098	Miscanthus Rhizosphere	LSKRYAAWALIDRDVMKKQAPLAPLFFRTVREFTSKRVGCWSYQPIYGSMNLNAVCIG*
Ga0105243_101733143	3300009148	Miscanthus Rhizosphere	RISNLSKRYAAWALIDRDVMKKQAPLAPLFFRTVREFTSKRVGCWSYQPIYGSMNLNAVCIG*
Ga0105241_115558342	3300009174	Corn Rhizosphere	QSAGRISNLSKRYAAWALIDRDVMKKQAPLAPLFFRTVREFTSKRVGCYSYQPIYAVMNFNAVCIK*
Ga0105242_130225152	3300009176	Miscanthus Rhizosphere	RISNLSKRYAAWALIDRDVMKKQAPLAPLFFRTVREFTSKRVGCYSYQPIYAVMNFNAVCIK*
Ga0126313_109798782	3300009840	Serpentine Soil	AAFNKRMVNAGRISNLPKRYAAWALIDRDVMKNQARIAPLFFRTVREFVSKRVGCWSYQPVYGSANLNAICLK*
Ga0126314_101164183	3300010042	Serpentine Soil	WALIDRDVMKQQAPIAPLFFRTVREFTSKRVGCWSYQPIYGAMNLNAVCIK*
Ga0126306_101915201	3300010166	Serpentine Soil	KRYAAWAAIDRDVMKQQAPLAPLFFRTVREFTSKRVGCYSYQPIYAVMNFNAVCLK*
Ga0134125_110948441	3300010371	Terrestrial Soil	RDVMKKQAPLAPLFFRTVREFASKRVGCWSYQPIYGSMNLNAVCIG*
Ga0134126_107932602	3300010396	Terrestrial Soil	SNLSKRYAAWALIDRDVMKKQAPLAPLFFRTVREFTSKRIGCYSYQPIYAVMNFNAVCIK
Ga0137374_1000070637	3300012204	Vadose Zone Soil	ISNLSKRYAAWALIDRDVMKKQAPLAPLFFRTVREFTSKRVGCWSYQPIYGSMNLNAVCIK*
Ga0137374_102926132	3300012204	Vadose Zone Soil	ISNLSKRYAAWALIDRDVMKKQAPLAPLFFRTVREFTSKRVGCYSYQPIYAVMNFNAVCLK*
Ga0137377_113455231	3300012211	Vadose Zone Soil	RYAAWALLDRDIMKNQAPLAPLFFRTVREFTSKRVGCWSYQPIYGSMNFNAVCIG*
Ga0137366_107628411	3300012354	Vadose Zone Soil	NNNAYFNNKTFNKKMELATRISNLPKRYAAWAAIDRDVMKNQAPLAPLFFRTVREFTSARVKNYSYQPIYAQMNFNAVSLG*
Ga0157328_10268292	3300012478	Arabidopsis Rhizosphere	GRISNLSKRYAAWALIDRNVMQKQAPLAPLFFRTVREFTSKRIGCWSYQPIYGAMNLNAVCIK*
Ga0157355_10048101	3300012493	Unplanted Soil	KRMQSAGRISNLSKRYQAWALIDRDVMKNQAPLAPLFFRTVREFTSKRIGCYSYQPIYAVMNFNAVCIK*
Ga0157341_10423602	3300012494	Arabidopsis Rhizosphere	SYFNNATFNKRMQSAGRISNLSKRYQAWALIDRDVMKNQAPLAPLFFRTVREFTSKRIGCYSYQPIYAVMNFNAVCIK*
Ga0157353_10001774	3300012496	Unplanted Soil	ISNLSKRYAAWALIDRNVMQKQAPLAPLFFRTVREFTSKRIGCWSYQPIYGAMNLNAVCIK*
Ga0157332_10486772	3300012511	Soil	SKRYQAWALIDRDVMKNQAPLAPLFFRTVREFTSKRIGCYSYQPIYAVMNFNAVCIK*
Ga0157330_10181202	3300012514	Soil	RDVMKQQAPLAPLFFRTVREFTSKRIGCWSYQPVYGAMNLNAVCIK*
Ga0164300_103349952	3300012951	Soil	MRDAGRISNLSKRYAAWAAIDRDVMKQQAPLAPLFFRTVREFTSKRVGCYSYQPIYAVMNFNAVCLK*
Ga0164305_118553732	3300012989	Soil	SKRYAAWAAIDRDVMKQQAPIAPLFFRTVREFTSKRIGCWSYQPIYGSMNLNAVCIG*
Ga0157372_113464182	3300013307	Corn Rhizosphere	RYAAWALIDRDVMKKQAPLAPLFFRTVREFTSKRVGCYSYQPIYAVMNFNAVCIK*
Ga0120172_10880831	3300013765	Permafrost	SYFNNAAFNKRMEAAGRISNLPKRYAAWALLDRDIMKNQAPLAPLFFRTVREFTSKRVGCYSYQPIYAVMNFNAVCLK*
Ga0120181_10571661	3300013766	Permafrost	RISNLPKRYAAWALIDRDIMKTQAPLAPLFFRTVREFTSKRVGCWSYQPIYGAMNFNAVCIG*
Ga0173483_105495852	3300015077	Soil	RMQSAGRISNLSKRYAAWALIDRDVMKKQAPLAPLFFRTVREFTSKRVGCWSYQPIYGSMNLSAVCIK*
Ga0173483_107027661	3300015077	Soil	NNNNSYFNNAAFNKRMQSAGRISNLSKRYQAWALIDRDVMKQQAPLAPLFFRTVREFTSKRVGCYSYQPIYAVMNFNAVCIK*
Ga0184620_101063942	3300018051	Groundwater Sediment	IDRDVMKQQAPLAPLFFRTVREFTSKRVGCYSYQPIYAVMNFNAVCLK
Ga0184617_11665932	3300018066	Groundwater Sediment	RDAGRISNLSKRYAAWAAIDRDVMKQQAPLAPLFFRTVREFTSKRVGCYSYQPIYAVMNFNAVCLK
Ga0184635_104055012	3300018072	Groundwater Sediment	DRDVMKKQAPLAPLFFRTVREFTSKRVGCWSYQPIYGSMYLSAVCIG
Ga0184641_14736392	3300019254	Groundwater Sediment	FNNRMRDAGRISNLSKRYAAWALIDRDVMKQQAPIAPLFFRTVREFTSKRIGCWSYQPIYGSMNLNAVCIG
Ga0193704_10927422	3300019867	Soil	ISNLSKRYAAWALIDRDVMKKQAPLAPLFFRTVREFTSKRVGCYSYQPIYAVMNFNAVCI
Ga0193705_10323832	3300019869	Soil	RYAAWALIDRDVMKKQAPLAPLFFRTVREFTSKRVGCWSYQPIYGSMNLSAVCIG
Ga0193705_10721492	3300019869	Soil	GRISNLSKRYAAWALIDRDVMKQQAPLAPLFFRTVREFTSKRVGCYSYQPIYAVMNFNAVCLK
Ga0193715_10565672	3300019878	Soil	NNSYFNHTGFNNRMRDAGRISNLSKRYAAWAAIDRDVMKQQAPLAPLFFRTVREFTSKRVGCYSYQPIYAVMNFNAVCLK
Ga0193715_11039332	3300019878	Soil	GFNNRMRDAGRISNLSKRYAAWALIDRDVMKQQAPIAPLFFRTTREFTSKRIGCWSYQPIYGSMNLNAVCIG
Ga0193718_11184041	3300019999	Soil	NLSKRYAAWAAIDRDVMKQQAPLAPLFFRTVREFTSKRVGCYSYQPIYAVMNFNAVCLK
Ga0193734_10313962	3300020015	Soil	NSYFNHVGFNNRMRDAGRISNLSKRYAAWAVIDRDVMKQQAPLAPLFFRTVREFTSKRIGCWSYQPIYGSMNLNAVCIG
Ga0193745_10845341	3300020059	Soil	NLPKRYAAWALIDRDVMKQQAPIAPLFFRTVREFTSKRVGCWSYQPIYGTMNFNAICIG
Ga0193745_11108201	3300020059	Soil	KRYAAWALIDRDVMKQQAPIAPLFFRTVREFTSKRIGCWSYQPIYGSMNLNAVCIG
Ga0210381_104000491	3300021078	Groundwater Sediment	QSAGRISNLSKRYAAWALIDRDVMKKQAPLAPLFFRTVREFTSKRVGCYSYQPIYAVMNFNAVCIK
Ga0210382_102458251	3300021080	Groundwater Sediment	ISNLSKRYAAWAAIDRDVMKQQAPLAPLFFRTVREFTSKRVGCYSYQPIYAVMNFNAVCL
Ga0224452_11941042	3300022534	Groundwater Sediment	AIDRDVMKQQAPLAPLFFRTVREFTSKRVGCYSYQPIYAVMNFNAVCLK
Ga0207688_107042561	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	ISNLSKRYAAWALIDRDVMKKQAPLAPLFFRTVREFTSKRIGCYSYQPIYAVMNFNAVCI
Ga0207654_109735692	3300025911	Corn Rhizosphere	NRMQSAGRISNLSKRYAAWALIDRDVMKKQAPLAPLFFRTVREFTSKRVGCYSYQPIYAVMNFNAVCIK
Ga0207681_109826812	3300025923	Switchgrass Rhizosphere	NLSKRYAAWALIDRDVMKKQAPLAPLFFRTVREFTSKRVGCYSYQPIYAVMNFNAVCIK
Ga0207687_106885781	3300025927	Miscanthus Rhizosphere	ALIDRDVMKKQAPLAPLFFRTVREFTSKRVGCWSYQPIYGSMNLNAVCIG
Ga0207706_100960963	3300025933	Corn Rhizosphere	AWALIDRDVMKKQAPLAPLFFRTVREFTSKRIGCYSYQPIYAVMNFNAVCIK
Ga0207706_104797042	3300025933	Corn Rhizosphere	AWALIDRDVMKKQAPLAPLFFRTVREFTSKRIGCWSYQPIYGSMNLSAVCIG
Ga0207686_111728472	3300025934	Miscanthus Rhizosphere	ASFNKRMQSAGRISNLSKRYAAWALIDRDVMKKQAPLAPLFFRTVREFTSKRIGCWSYQPIYGSMNLSAVCIG
Ga0207667_106319521	3300025949	Corn Rhizosphere	NNAYFNNPTFNNRMQSAGRISNLSKRYAAWALIDRDVMKKQAPLAPLFFRTVREFTSKRIGCYSYQPIYAVMNFNAVCIK
Ga0268264_114391912	3300028381	Switchgrass Rhizosphere	PTFNNRMQSAGRISNLSKRYAAWALIDRDVMKKQAPLAPLFFRTVREFTSKRIGCYSYQPIYAVMNFNAVCIK
Ga0247818_107075552	3300028589	Soil	KRYAAWALIDRDVMKKQAPLAPLFFRTVREFTSKRIGCYSYQPIYAVMNFNAVCIK
Ga0307303_101557512	3300028713	Soil	AAIDRDVMKQQAPLAPLFFRTVREFTSKRVGCYSYQPIYAVMNFNAVCLK
Ga0307311_100272081	3300028716	Soil	DAGRISNLSKRYAAWAAIDRDVMKQQAPLAPLFFRTVREFTSKRVGCYSYQPIYAVMNFNAVCLK
Ga0307307_100991482	3300028718	Soil	FNNRMRDAGRISNLSKRYAAWAAIDRDVMKQQAPLAPLFFRTVREFTSKRVGCYSYQPIYAVMNFNAVCLK
Ga0307307_102613511	3300028718	Soil	AGRISNLSKRYAAWALIDRDVMKKQAPLAPLFFRTVREFTSKRVGCYSYQPIYAVMNFNAVCIK
Ga0307315_102289631	3300028721	Soil	AWAAIDRDVMKQQAPLAPLFFRTVREFTSKRVGCYSYQPIYAVMNFNAVCLK
Ga0307315_102643821	3300028721	Soil	QAAGHVSNLSKRYPAWALIDRDVMKNQAPLAPLFFRTTREFTSKRVGCWSYQPIYAQMNFNAVCIK
Ga0307319_101338542	3300028722	Soil	FNHTGFNNRMRDAGRISNLSKRYAAWAAIDRDVMKQQAPLAPLFFRTVREFTSKRVGCYSYQPIYAVMNFNAVCLK
Ga0307280_101512732	3300028768	Soil	SNLSKRYAAWAAIDRDVMKQQAPLAPLFFRTVREFTSKRVGCYSYQPIYAVMNFNAVCLK
Ga0307280_101922591	3300028768	Soil	RISNLSKRYAAWALIDRDVMKQQAPIAPLFFRTVREFTSKRVGCYSYQPIYAVMNFNAVCIK
Ga0307282_104389361	3300028784	Soil	YFNNPTFNKRMRYAGRISNLSKRYAAWALIDRDVMKKQAPLAPLFFRTVREFTSKRVGCYSYQPIYAVMNFNAVCIK
Ga0307290_100619401	3300028791	Soil	GFNNRMRDAGRISNLSKRYAAWALIDRDVMKQQAPIAPLFFRTVREFTSKRIGCWSYQPIYGSMNLNAVCIG
Ga0307287_100344021	3300028796	Soil	AAWALIDRDVMKKQAPLAPLFFRTVREFTSKRVGCYSYQPIYAVMNFNAVCIK
Ga0307284_101435322	3300028799	Soil	SYFNHTGFNNRMRDAGRISNLSKRYAAWAAIDRDVMKQQAPLAPLFFRTVREFTSKRVGCYSYQPIYAVMNFNAVCLK
Ga0247825_113273611	3300028812	Soil	TFNNRMQSAGRISNLSKRYAAWALIDRDVMKKQAPLAPLFFRTVREFTSKRVGCYSYQPIYAVMNFNAVCIK
Ga0307302_102707271	3300028814	Soil	AWALIDRDVMKKQAPLAPLFFRTVREFTSKRVGCWSYQPIYGSMNLSAVCIG
Ga0307296_100012071	3300028819	Soil	LSKRYAAWALIDRDVMKQQAPIAPLFFRTTREFTSKRIGCWSYQPIYGSMNLNAVCIG
Ga0307296_101019461	3300028819	Soil	YAAWALIDRDVMKKQAPLAPLFFRTVREFTSKRVGCYSYQPIYAVMNFNAVCIK
Ga0307312_102982572	3300028828	Soil	NNRMQSAGRISNLSKRYAAWALIDRDVMKKQAPLAPLFFRTVREFTSKRVGCYSYQPIYAVMNFNAVCIK
Ga0307314_100017677	3300028872	Soil	NHVGFNNRMRDAGRISNLSKRYTAWAAIDRDVMKQQAPIAPLFFRTTREFTSKRIGCWSYQPIYGSMNLNAVCIG
Ga0307300_101790902	3300028880	Soil	AAFNNRMQSAGRISNLSKRYAAWALIDRDVMKKQAPLAPLFFRTVREFTSKRVGCYSYQPIYAVMNFNAVCIK
Ga0307300_102250931	3300028880	Soil	NHVGFNNRMRDAGRISNLSKRYAAWAVIDRDVMKQQAPIAPLFFRTVREFTSKRVGCWSYQPVYSTMNLNAVCIG
Ga0307304_100308123	3300028885	Soil	SYFNHVGFNNRMRDAGRISNLSKRYAAWALIDRDVMKQQAPIAPLFFRTVREFTSKRIGCWSYQPIYGSMNLNAVCIG
Ga0308201_100635001	3300031091	Soil	AGRISNLSKRYAAWALIDRDVMKQQAPIAPLFFRTTREFTSKRIGCWSYQPIYGSMNLNAVCIG
Ga0308204_100446421	3300031092	Soil	MQSAGRISNLSKRYAAWALIDRDVMKKQAPLAPLFFRTVREFTSKRVGCYSYQPIYAVMNFNAVCIK
Ga0307501_101119872	3300031152	Soil	RVSNLSKRYAAWAAIDRDVMKQQAPLAPLFFRTVREFTSKRVGCYSYQPIYAVMNFNAVCLK
Ga0308176_104319852	3300031996	Soil	QAENNNDNAYFNNPTFNKRMEQAGRISNLSKRYSAWALIDRDVMKQQAPLAPLFFRTVREFTSKRVGCYSYQPIYAVMNFNAVCIK
Ga0370541_009530_1_186	3300034680	Soil	ISNLSKRYAAWALIDRDVMKQQAPIAPLFFRTVREFTSKRIGCWSYQPIYGSMNLNAVCI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101605

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences