Metagenome Family F101588

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101588
Family Type	Metagenome
Number of Sequences	102
Average Sequence Length	44 residues
Representative Sequence	MSEIEKQTEPIASAWMSFDKQRGLSNSVTNSAAFADFLLLKEQI
Number of Associated Samples	89
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	82.35 %
% of genes near scaffold ends (potentially truncated)	25.49 %
% of genes from short scaffolds (< 2000 bps)	78.43 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (72.549 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (35.294 % of family members)
Environment Ontology (ENVO)	Unclassified (39.216 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (48.039 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 56.94% β-sheet: 0.00% Coil/Unstructured: 43.06%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF13533	Biotin_lipoyl_2	31.37
PF16576	HlyD_D23	13.73
PF00529	CusB_dom_1	5.88
PF12700	HlyD_2	1.96
PF07690	MFS_1	1.96
PF08281	Sigma70_r4_2	1.96
PF01040	UbiA	0.98
PF02776	TPP_enzyme_N	0.98
PF10431	ClpB_D2-small	0.98
PF02405	MlaE	0.98
PF03886	ABC_trans_aux	0.98
PF12710	HAD	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0767	Permease subunit MlaE of the ABC-type intermembrane phospholipid transporter Mla	Cell wall/membrane/envelope biogenesis [M]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	72.55 %
Unclassified	root	N/A	27.45 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	72.55 %
Unclassified	root	N/A	27.45 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	72.55 %
Unclassified	root	N/A	27.45 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	42.16 %
Unclassified	root	N/A	27.45 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	6.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.45 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	23.53 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	11.76 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.45 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	22.55 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.76 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5.88 %
Candidatus Acidoferrales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.45 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	22.55 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.76 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5.88 %
Candidatus Acidoferrum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.45 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.76 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5.88 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	1.96 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.45 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.76 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5.88 %
Acidobacteriaceae bacterium KBS 83	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	1.96 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2162886013\|SwBSRL2_contig_12992481	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1730	Open in IMG/M
3300001471\|JGI12712J15308_10203321	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300001867\|JGI12627J18819_10234102	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	739	Open in IMG/M
3300002907\|JGI25613J43889_10117574	Not Available	675	Open in IMG/M
3300002910\|JGI25615J43890_1006610	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1800	Open in IMG/M
3300002914\|JGI25617J43924_10031871	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1878	Open in IMG/M
3300002917\|JGI25616J43925_10206668	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	755	Open in IMG/M
3300004479\|Ga0062595_101397877	Not Available	638	Open in IMG/M
3300005166\|Ga0066674_10155140	All Organisms → cellular organisms → Bacteria	1082	Open in IMG/M
3300005180\|Ga0066685_10128930	Not Available	1709	Open in IMG/M
3300005180\|Ga0066685_11052527	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300005187\|Ga0066675_10503702	All Organisms → cellular organisms → Bacteria	905	Open in IMG/M
3300005356\|Ga0070674_101447463	Not Available	616	Open in IMG/M
3300005365\|Ga0070688_100309676	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1144	Open in IMG/M
3300005436\|Ga0070713_100943097	All Organisms → cellular organisms → Bacteria	831	Open in IMG/M
3300005445\|Ga0070708_100142951	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2220	Open in IMG/M
3300005451\|Ga0066681_10491814	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	756	Open in IMG/M
3300005518\|Ga0070699_101663419	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	585	Open in IMG/M
3300005549\|Ga0070704_100133160	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1930	Open in IMG/M
3300005554\|Ga0066661_10113857	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1629	Open in IMG/M
3300005718\|Ga0068866_10232885	Not Available	1118	Open in IMG/M
3300006047\|Ga0075024_100641050	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	576	Open in IMG/M
3300006176\|Ga0070765_100042520	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3649	Open in IMG/M
3300006796\|Ga0066665_10606391	All Organisms → cellular organisms → Bacteria	879	Open in IMG/M
3300006797\|Ga0066659_11173507	Not Available	642	Open in IMG/M
3300006854\|Ga0075425_103119291	Not Available	505	Open in IMG/M
3300007076\|Ga0075435_101111107	All Organisms → cellular organisms → Bacteria	691	Open in IMG/M
3300007255\|Ga0099791_10688824	Not Available	502	Open in IMG/M
3300007258\|Ga0099793_10380912	All Organisms → cellular organisms → Bacteria	692	Open in IMG/M
3300009012\|Ga0066710_103010424	Not Available	656	Open in IMG/M
3300009038\|Ga0099829_11604703	Not Available	537	Open in IMG/M
3300009088\|Ga0099830_10105024	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2114	Open in IMG/M
3300009088\|Ga0099830_10301580	Not Available	1279	Open in IMG/M
3300009089\|Ga0099828_10183313	All Organisms → cellular organisms → Bacteria → Acidobacteria	1863	Open in IMG/M
3300009090\|Ga0099827_10484062	All Organisms → cellular organisms → Bacteria	1062	Open in IMG/M
3300009176\|Ga0105242_10373951	All Organisms → cellular organisms → Bacteria	1323	Open in IMG/M
3300010303\|Ga0134082_10478358	Not Available	541	Open in IMG/M
3300011269\|Ga0137392_10068823	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2718	Open in IMG/M
3300011271\|Ga0137393_11119760	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	669	Open in IMG/M
3300012198\|Ga0137364_10059230	Not Available	2581	Open in IMG/M
3300012199\|Ga0137383_10496758	All Organisms → cellular organisms → Bacteria → Acidobacteria	893	Open in IMG/M
3300012200\|Ga0137382_10489187	Not Available	873	Open in IMG/M
3300012201\|Ga0137365_10010294	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7400	Open in IMG/M
3300012202\|Ga0137363_10036580	All Organisms → cellular organisms → Bacteria	3432	Open in IMG/M
3300012202\|Ga0137363_10208500	All Organisms → cellular organisms → Bacteria	1571	Open in IMG/M
3300012206\|Ga0137380_11606615	Not Available	534	Open in IMG/M
3300012210\|Ga0137378_11168339	All Organisms → cellular organisms → Bacteria → Acidobacteria	685	Open in IMG/M
3300012210\|Ga0137378_11532231	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	577	Open in IMG/M
3300012351\|Ga0137386_10258046	Not Available	1253	Open in IMG/M
3300012363\|Ga0137390_10782259	Not Available	913	Open in IMG/M
3300012685\|Ga0137397_10925644	Not Available	645	Open in IMG/M
3300012917\|Ga0137395_10087185	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2050	Open in IMG/M
3300012917\|Ga0137395_10422511	Not Available	956	Open in IMG/M
3300012922\|Ga0137394_11588895	Not Available	511	Open in IMG/M
3300012925\|Ga0137419_11392757	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	592	Open in IMG/M
3300012929\|Ga0137404_10209888	Not Available	1654	Open in IMG/M
3300013306\|Ga0163162_11945715	Not Available	673	Open in IMG/M
3300015053\|Ga0137405_1410275	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1893	Open in IMG/M
3300015054\|Ga0137420_1101796	All Organisms → cellular organisms → Bacteria	771	Open in IMG/M
3300015245\|Ga0137409_10363345	All Organisms → cellular organisms → Bacteria	1259	Open in IMG/M
3300018468\|Ga0066662_10699510	All Organisms → cellular organisms → Bacteria	967	Open in IMG/M
3300018482\|Ga0066669_11027089	All Organisms → cellular organisms → Bacteria → Proteobacteria	744	Open in IMG/M
3300019789\|Ga0137408_1210113	Not Available	623	Open in IMG/M
3300019887\|Ga0193729_1018964	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2999	Open in IMG/M
3300020199\|Ga0179592_10024256	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	2714	Open in IMG/M
3300020579\|Ga0210407_10002885	All Organisms → cellular organisms → Bacteria → Acidobacteria	14333	Open in IMG/M
3300020579\|Ga0210407_10368780	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1123	Open in IMG/M
3300020580\|Ga0210403_10018579	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5554	Open in IMG/M
3300020580\|Ga0210403_10053866	All Organisms → cellular organisms → Bacteria	3219	Open in IMG/M
3300020580\|Ga0210403_10204914	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1619	Open in IMG/M
3300021088\|Ga0210404_10112989	Not Available	1386	Open in IMG/M
3300021170\|Ga0210400_10681801	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	845	Open in IMG/M
3300021170\|Ga0210400_10894725	All Organisms → cellular organisms → Bacteria	725	Open in IMG/M
3300021181\|Ga0210388_10818892	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	806	Open in IMG/M
3300021404\|Ga0210389_10813445	Not Available	730	Open in IMG/M
3300021406\|Ga0210386_11380362	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300021407\|Ga0210383_10149558	All Organisms → cellular organisms → Bacteria	1984	Open in IMG/M
3300021420\|Ga0210394_11149086	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	668	Open in IMG/M
3300021479\|Ga0210410_10011137	All Organisms → cellular organisms → Bacteria → Acidobacteria	7750	Open in IMG/M
3300024330\|Ga0137417_1120824	All Organisms → cellular organisms → Bacteria	1763	Open in IMG/M
3300024330\|Ga0137417_1357775	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4171	Open in IMG/M
3300025899\|Ga0207642_10234178	Not Available	1033	Open in IMG/M
3300026285\|Ga0209438_1036961	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	1618	Open in IMG/M
3300026326\|Ga0209801_1203829	Not Available	789	Open in IMG/M
3300026354\|Ga0257180_1014185	Not Available	987	Open in IMG/M
3300026358\|Ga0257166_1007045	All Organisms → cellular organisms → Bacteria	1326	Open in IMG/M
3300026469\|Ga0257169_1004271	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1541	Open in IMG/M
3300026480\|Ga0257177_1012976	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1124	Open in IMG/M
3300026515\|Ga0257158_1044536	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M
3300026538\|Ga0209056_10000183	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	67294	Open in IMG/M
3300026551\|Ga0209648_10011973	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	7540	Open in IMG/M
3300026551\|Ga0209648_10014353	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6919	Open in IMG/M
3300026551\|Ga0209648_10029685	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4778	Open in IMG/M
3300026555\|Ga0179593_1055248	All Organisms → cellular organisms → Bacteria → Acidobacteria	2227	Open in IMG/M
3300027591\|Ga0209733_1032548	All Organisms → cellular organisms → Bacteria → Acidobacteria	1400	Open in IMG/M
3300027645\|Ga0209117_1002349	All Organisms → cellular organisms → Bacteria	6584	Open in IMG/M
3300027875\|Ga0209283_10516140	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	767	Open in IMG/M
3300027903\|Ga0209488_10994122	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	581	Open in IMG/M
3300031820\|Ga0307473_10861817	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	651	Open in IMG/M
3300032174\|Ga0307470_10004145	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5592	Open in IMG/M
3300032205\|Ga0307472_100467019	All Organisms → cellular organisms → Bacteria	1078	Open in IMG/M
3300032205\|Ga0307472_101330990	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	693	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.14%
Host-Associated	Host-Associated	6.86%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	92.16%
Plants	Host-Associated → Plants	6.86%
Aquatic	Environmental → Aquatic	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	92.16%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.92%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.94%
Sediment	Environmental → Aquatic → Sediment	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	82.35%
Loam	Environmental → Terrestrial → Soil → Loam	9.80%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.98%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	38.24%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	22.55%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	20.59%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.98%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	35.29%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.63%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	10.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	9.80%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.96%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.98%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.98%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.98%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886013	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300001471	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002907	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm	Environmental	Open in IMG/M
3300002910	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300026354	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-B	Environmental	Open in IMG/M
3300026358	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-14-B	Environmental	Open in IMG/M
3300026469	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-17-B	Environmental	Open in IMG/M
3300026480	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-B	Environmental	Open in IMG/M
3300026515	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-A	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300027591	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)	Environmental	Open in IMG/M
3300027645	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
SwBSRL2_0495.00003910	2162886013	Switchgrass Rhizosphere	MSAIEKQTAPIASARTSFDKQTGLSNSVTNSAAFADFSLLKEQI
JGI12712J15308_102033212	3300001471	Forest Soil	MSAIKKQTEPIASEWTIFNKHRSLSNSARNRAAFADFMLPKEQI
JGI12627J18819_102341022	3300001867	Forest Soil	MSECKKQTESIASAWMSFDKQWGLSNSVTNSAVSADFSLLKEQH*
JGI25613J43889_101175741	3300002907	Grasslands Soil	MSEIEKQTEPVASAWMSFDKQRGLSNSVTNSAAFADFLLLKEQI*
JGI25615J43890_10066102	3300002910	Grasslands Soil	MSEIEKXTEPVASAWMSFDKQRGLSNSVTNSAAFADFLLLKEQI*
JGI25617J43924_100318711	3300002914	Grasslands Soil	MSEIEKQTEPIASAWMSFDKQRGLSNSVTNSAAFADFLLLKEQI*
JGI25616J43925_102066681	3300002917	Grasslands Soil	MSAIEKQTAPIASAWMSFDKQKGLSNSVTNSAAFADFLLLKEQI*
Ga0062595_1013978772	3300004479	Soil	MSEIEKQAQPIASARMIFDKQRGASNPVTNIAFADLLLLKEQL*
Ga0066674_101551402	3300005166	Soil	MSEIEKQTEPIASAWMSFDKQRGLSTSVTNSAAFADFLLLKEQI*
Ga0066685_101289303	3300005180	Soil	MSAIEKETEPSASAWKIFDRQRGLSNSVMNSAAFADFLLLKEQI*
Ga0066685_110525272	3300005180	Soil	MSEIEKQTEPVASAWMSFDKQRGLSNSVTNSAAFADFLLLKGKFDVRL
Ga0066675_105037022	3300005187	Soil	MSVIEKETEPSASAWKIFDRQRGLSNSVMNSAAFADFLLLKEQI*
Ga0070674_1014474632	3300005356	Miscanthus Rhizosphere	MSEIEKQAQPIASARMIFDKQRGASNPVTNIAFADFLLLKEQL*
Ga0070688_1003096762	3300005365	Switchgrass Rhizosphere	MSAVEKQTAPIASARTSFDKQTGLSNSVTNSAAFADFSLLKEQI*
Ga0070713_1009430972	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MSAIEKETEPIASVRKIFDRQRGLSNSVMNSAAFADFLLLKEHI*
Ga0070708_1001429513	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MSAIEKQTAPIASAWMSFDRQKGLSNSVTNCAAFADFFLLKEQI*
Ga0066681_104918142	3300005451	Soil	MSEIEKQTEPVPSAWMSFDKQRGLSTSVTNSAAFADFLLLKEQI*
Ga0070699_1016634192	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MSEIEKQTEPIASAWMSFDKQRGLSNLVTNSAAFADFLLLKEQI*
Ga0070704_1001331602	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MSAIEKQTAPIASARTSFDKQTGLSNSVTNSAAFADFSLLKEQI*
Ga0066661_101138573	3300005554	Soil	SKIEKQTEPIASAWMSFDKQRGLSTSVANSAAFADFLLLKEQI*
Ga0068866_102328851	3300005718	Miscanthus Rhizosphere	SLRGVMSEIEKQAQPIASARMIFDKQRGASNPVTNIAFADLLLLKEQL*
Ga0075024_1006410502	3300006047	Watersheds	MSEIEKQTEPIASAWMTFDKQRGLSKSVTNSASFADFLLLKEQI*
Ga0070765_1000425202	3300006176	Soil	MSAIKKQTEPIASEWTIFNKHRSLSNSARNRAAFADFMLPKEQI*
Ga0066665_106063912	3300006796	Soil	MSKIEKQTEPVASAWMSFDKQRGLSNSVTNSAAFADFSLLKEQI*
Ga0066659_111735071	3300006797	Soil	SVMSEIEKQTEPVASAWMSFDKQRGLSNSVTNSAAFADFLLLKEQI*
Ga0075425_1031192912	3300006854	Populus Rhizosphere	LRGVMSAIEKQTAPIASAWMSFDKQTGLSTSVTNSVAFADFLLLKEQI*
Ga0075435_1011111072	3300007076	Populus Rhizosphere	MSETEKQTEPIASAWMSFKQRGLSNSTTNSVAFTDFLLQKGKFN
Ga0099791_106888242	3300007255	Vadose Zone Soil	MSEIEKQTEPVASAWMSFDKQRGLSNSVTNSAAFADFLMLKEQI*
Ga0099793_103809122	3300007258	Vadose Zone Soil	MSAIKKQTESIASAWMTFNKQMSLSNSVTNSAAFADFLLLKEQI*
Ga0066710_1030104242	3300009012	Grasslands Soil	AEPIASAWMSFDKQRGLSTSVTNSAAFADFLLLKEQI
Ga0099829_116047032	3300009038	Vadose Zone Soil	MSAIEKQTAPIASAWMSFDKQKGLSNSKTNSAGFADFLLLKEQI*
Ga0099830_101050243	3300009088	Vadose Zone Soil	MSAIKKQTEPIASAWMIFNRLMSLSNSVTNSAAFADFLLLKEQI*
Ga0099830_103015802	3300009088	Vadose Zone Soil	MSEIEKQTELVASAWMSFDKQRGLSNSVTNSAAFADFLLLKEQI*
Ga0099828_101833132	3300009089	Vadose Zone Soil	MSAIKKQTEPIASAWMIFNKQRSLGNSVTNSAAFADFLLLKEQI*
Ga0099827_104840622	3300009090	Vadose Zone Soil	MPEIEKRTEPIASAWMSFDKQKGLSNSITNSAAFADFLLLKEQI*
Ga0105242_103739513	3300009176	Miscanthus Rhizosphere	VMSAIEKQTAPIASARTSFDKQTGLSNSVTNSAAFADFSLLKEQI*
Ga0134082_104783581	3300010303	Grasslands Soil	VASAWMSVDKQRGLSNSVTNSAAFADFLLLKEQI*
Ga0137392_100688233	3300011269	Vadose Zone Soil	VSAIKKQTEPIASAWMIFNKQKSLSNSVTNIAAFADFLLLKEQI*
Ga0137393_111197602	3300011271	Vadose Zone Soil	MFSLRSVMPEIEKRTEPIASVWSFAKQKGLSNSITNSAAFADFLLLKEQI*
Ga0137364_100592305	3300012198	Vadose Zone Soil	MSAIEKETEPSASAWKIFDRQRGLSNSVMNSAAFADFLPLKEQI*
Ga0137383_104967582	3300012199	Vadose Zone Soil	MSAIKKQTEPIASAWMTFNKQMSLSNSVTNSAAFADFLPLKEQI*
Ga0137382_104891871	3300012200	Vadose Zone Soil	EKETEPSASAWKIFDRQRGLSNSVMNSAAFADFLPLKEQI*
Ga0137365_100102946	3300012201	Vadose Zone Soil	MSEIEKQTEPVASAWMSFDKQRSLSNSVTNSAAFADFLLLKEQI*
Ga0137363_100365802	3300012202	Vadose Zone Soil	MSAIEKKIKPIAFARQIFDRQRGLSNSVMNSAAFADFLLLKEQI*
Ga0137363_102085003	3300012202	Vadose Zone Soil	MFSLRSVMPEIEKRTELIASVWSFAKQKGLSNSITNSAAFADFLLLKEQI*
Ga0137380_116066152	3300012206	Vadose Zone Soil	MSEIEKQTEPIASAWMSFDKQRGLSNSVTNSAALADFLLLKEQI*
Ga0137378_111683392	3300012210	Vadose Zone Soil	MSAIKKQTEPIASASMIFNKQMSLSNSNTNIAAFADFSLLKEQI*
Ga0137378_115322312	3300012210	Vadose Zone Soil	MSEIEKQAEPIASAWMSFDKQRGLSNSVTNSAAFADFLLLKEQI*
Ga0137386_102580461	3300012351	Vadose Zone Soil	QTEPVASAWMSFDKQRGLSNSVTNSAALADFLLLKEQI*
Ga0137390_107822591	3300012363	Vadose Zone Soil	VMPAIKKQTDPFIPVWMICNRQMSLSNSVTNSAAFADFLLQKEQI*
Ga0137397_109256442	3300012685	Vadose Zone Soil	MSAIEKQTAPIASAWMSFDKQTGLSNSVTDSSAFSDFSLLKEQI*
Ga0137395_100871852	3300012917	Vadose Zone Soil	MPAIKKQTDTVTSVWMIFNRHMSRSNSVTNSAAFADFLLQKEQI*
Ga0137395_104225111	3300012917	Vadose Zone Soil	EKQTEPVASAWMSFDKQRGLSNSVTNSAAFADFLMLKEQI*
Ga0137394_115888951	3300012922	Vadose Zone Soil	MSEIEKQTEPIASAWMSFDKQRGLSDSVTNSAAFADFLLLKEQI*
Ga0137419_113927572	3300012925	Vadose Zone Soil	MSAIKKQTESIASAWMTFNKQMSLSNSVTNSAAFADFLLLKEEI*
Ga0137404_102098883	3300012929	Vadose Zone Soil	MSEIQKQTEPIASAWMSFDKQRGLSNSVTNSAAFADSLLLKEQI*
Ga0163162_119457152	3300013306	Switchgrass Rhizosphere	MSAIEKQTAPIASARASFDKQTGLSNSVTNSAAFADFSLL
Ga0137405_14102751	3300015053	Vadose Zone Soil	MSAIEKQTAPIASAWMSFVKQTGLSNSVTNSAAFADFSLPKEQI*
Ga0137420_11017962	3300015054	Vadose Zone Soil	MSEIEKQTEPIASAWMSFDKQRGLSTSVTNSAAFADFL
Ga0137409_103633452	3300015245	Vadose Zone Soil	MSEIEKQTEPVASAWMSFDKQRGLSTSVTNSAAFADFLLLKEQI*
Ga0066662_106995102	3300018468	Grasslands Soil	MSEIEKQTEPVASAWMSFDKQRGLSNSVTNSAAFADFLLLKEQI
Ga0066669_110270892	3300018482	Grasslands Soil	MSEIEKQTEPIASAWMSFDKQRGLSTSVTNSAAFADFLLLKEQI
Ga0137408_12101132	3300019789	Vadose Zone Soil	EPVASAWMSFDKQRGLSNSVTNSAAFADFLLLKEQI
Ga0193729_10189642	3300019887	Soil	MSSIEIETEPITRVWEIFDNQRGLSNSVMNSAAFANFLLLKERI
Ga0179592_100242562	3300020199	Vadose Zone Soil	MSEIEKQTELVASAWMSFDKQRGLSNSVTNSAAFADFLLLKEQI
Ga0210407_1000288517	3300020579	Soil	MSEIEKQTEPITSAWMNFDKQRGLSNSVTNCAAFADFLLLKEQN
Ga0210407_103687802	3300020579	Soil	MSEIEKQTEPIASAWMIFDRQRGLSNSAMNSAALADFLLLKEQI
Ga0210403_100185798	3300020580	Soil	MSAIRKETEPVASAMKIFDRQKGLSSSLMVSAAFADFFLLKEQI
Ga0210403_100538663	3300020580	Soil	MSAIEKETEPIASAWKIFDRQRGPRNSVMNSAAFADFLLLKEQI
Ga0210403_102049142	3300020580	Soil	MSAIKKQIEPIASARMIFNKQRTLSNSVTNTAAFADFLLLKEQI
Ga0210404_101129892	3300021088	Soil	MSAIKKQIQPIASARMIFNKQRTLSNSVTNTAAFADFLLLKEQI
Ga0210400_106818012	3300021170	Soil	LRSVISEFEKQTAPIASARMRFGKKRVLNNSVTNSAAFADFLQLKEQI
Ga0210400_108947252	3300021170	Soil	MSEIEKQTEPIASARMSFDKQRSLGNSLTNSAAFADFLLLKEQI
Ga0210388_108188922	3300021181	Soil	MSAIQKQTEPIDFERMIFNKQMSPSNSATNSAAFANFLLQKEQI
Ga0210389_108134451	3300021404	Soil	LRSVMSECKKQTESIASAWMSFDKQWGLSNSVTNSAVSADFSLLKEQH
Ga0210386_113803622	3300021406	Soil	MSECKKQTESIASAWMSFDKQWGLSNSVTNSAVSTDF
Ga0210383_101495582	3300021407	Soil	MFAIQKQTEPIDFERMIFNKQMSPSNSATNSAAFANFLLQKEQI
Ga0210394_111490861	3300021420	Soil	PLRGFMSAIKKQTEPIASAWMIFSKHRSLGNSITHSKAFADFLLRKEQI
Ga0210410_100111372	3300021479	Soil	MSECKKQTESIASAWMSFDKQWGLSNSVTNSAVSADFSLLKEQH
Ga0137417_11208242	3300024330	Vadose Zone Soil	MSEIEKQTEPVASAWMSFDKQRGLNNSVTNSAAFADFLLLKEQI
Ga0137417_13577755	3300024330	Vadose Zone Soil	MSAIKKQTESIASAWMTFNKQMSLSNSVTNSAAFADFLLLKEQI
Ga0207642_102341782	3300025899	Miscanthus Rhizosphere	MSEIEKQAQPIASARMIFDKQRGASNPVTNIAFADLLLLKEQL
Ga0209438_10369611	3300026285	Grasslands Soil	SLRSVMSEIEKQTEPIASAWMSFDKQRGLSNSVTNSAAFADFLLLKEQI
Ga0209801_12038292	3300026326	Soil	MSAIEKETEPSASAWKIFDRQRGLSNSVMNSAAFADFLLLKEQI
Ga0257180_10141852	3300026354	Soil	MSEIEKQTEPVASAWMSFDKQRGLSTSVTNSAAFADFLLLKEQI
Ga0257166_10070453	3300026358	Soil	MSEIEKQTEPIASAWMSFDKQRGLSNSVTNSAAFADFLLLKEQI
Ga0257169_10042712	3300026469	Soil	MSEIEKQTEPIASAWMTFDKQRGLSNSVTNSAAFADFLLLKEQI
Ga0257177_10129762	3300026480	Soil	MSKIEKQTEPVASAWMSFDKQRGLSNSVTNSAAFADFLLLKEQI
Ga0257158_10445362	3300026515	Soil	MSEIEKQTEPVASAWMSFDKQRGLSNSVTNSAAFADFLMLKEQI
Ga0209056_100001836	3300026538	Soil	MSVIEKETEPSASAWKIFDRQRGLSNSVMNSAAFADFLLLKEQI
Ga0209648_100119737	3300026551	Grasslands Soil	IEKQTAPIASAWMSFDKQKGLSNSVTNSAAFADFLLLKEQI
Ga0209648_100143537	3300026551	Grasslands Soil	MPEIEKRTEPIASAWMSFDKQKGLSNSITNSAAFADFLLLKEQI
Ga0209648_100296852	3300026551	Grasslands Soil	MFSLRGTMSAIEKQTAPIASAWMSFDKQKGLSNSKTNSAAFADFLLLKEQI
Ga0179593_10552481	3300026555	Vadose Zone Soil	MSEIEKQTEPIASAWMSFDKQRGLSTSVTNSAAFA
Ga0209733_10325482	3300027591	Forest Soil	MSSIEIETEPITRVWEIFDNQRGLSNSVMNSAAFANFLLLKEHI
Ga0209117_10023499	3300027645	Forest Soil	MSEFEKQIEPIASAWMSFDKQRGLCNSVTNSAAFADFLLLKEQI
Ga0209283_105161402	3300027875	Vadose Zone Soil	MSAIKKQTEPIASAWMIFNKQRSLGNSVTNSAAFADFLLLKEQI
Ga0209488_109941222	3300027903	Vadose Zone Soil	MSAIKKQTESIASAWMIFNKRSGLSNSVTNNAAFADFLLLKEQI
Ga0307473_108618172	3300031820	Hardwood Forest Soil	MSAIEKQTAPIASAWMSFDKQKGLSNSVTNCAAFADFFLLKEQI
Ga0307470_100041454	3300032174	Hardwood Forest Soil	MSEIEKQTVPIASAWKIFGRQRGLSNSVMNSAAFAGFLPLKEQI
Ga0307472_1004670192	3300032205	Hardwood Forest Soil	MSEIEKQTAPIASAWKIFDGQRGLSNAVMNSAAFAKFWLLKEQL
Ga0307472_1013309902	3300032205	Hardwood Forest Soil	MSAIEKQTAPIASARTSFDKQTGLSNSVTDSAAFADFSLLKEQI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F101588

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences