Metagenome / Metatranscriptome Family F101562

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101562
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	66 residues
Representative Sequence	MERQGRLNSQQLKDLSDELAALMKQQSDARLTEVFVRMTQQEIGAFDLRAQRISKIHVILSEHDAKR
Number of Associated Samples	68
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	72.55 %
% of genes near scaffold ends (potentially truncated)	23.53 %
% of genes from short scaffolds (< 2000 bps)	74.51 %
Associated GOLD sequencing projects	60
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.67

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (50.980 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (32.353 % of family members)
Environment Ontology (ENVO)	Unclassified (52.941 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (84.314 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 54.74% β-sheet: 0.00% Coil/Unstructured: 45.26%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.67
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.67
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF00072	Response_reg	6.86
PF12728	HTH_17	4.90
PF00756	Esterase	1.96
PF07238	PilZ	1.96
PF07508	Recombinase	1.96
PF04366	Ysc84	0.98
PF01548	DEDD_Tnp_IS110	0.98
PF00753	Lactamase_B	0.98
PF00484	Pro_CA	0.98
PF07676	PD40	0.98
PF01850	PIN	0.98
PF00005	ABC_tran	0.98
PF08327	AHSA1	0.98
PF01165	Ribosomal_S21	0.98
PF03544	TonB_C	0.98
PF09364	XFP_N	0.98
PF00805	Pentapeptide	0.98
PF13545	HTH_Crp_2	0.98
PF00155	Aminotran_1_2	0.98
PF00571	CBS	0.98
PF08238	Sel1	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	1.96
COG0288	Carbonic anhydrase	Inorganic ion transport and metabolism [P]	0.98
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	0.98
COG0828	Ribosomal protein S21	Translation, ribosomal structure and biogenesis [J]	0.98
COG1357	Uncharacterized conserved protein YjbI, contains pentapeptide repeats	Function unknown [S]	0.98
COG2930	Lipid-binding SYLF domain, Ysc84/FYVE family	Lipid transport and metabolism [I]	0.98
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	50.98 %
Unclassified	root	N/A	49.02 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	50.98 %
Unclassified	root	N/A	49.02 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	50.98 %
Unclassified	root	N/A	49.02 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.02 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	34.31 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.96 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.98 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.02 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	13.73 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	7.84 %
Nitrospira	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira	0.98 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.98 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.02 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.73 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	7.84 %
Nitrospirales	order	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	0.98 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.98 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.02 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.73 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7.84 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.98 %
Nitrospiraceae	family	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	0.98 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.02 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.73 %
Candidatus Sulfotelmatobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	3.92 %
Acidicapsa	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa	0.98 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.98 %
Nitrospira	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	0.98 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.02 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.73 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	3.92 %
Acidicapsa acidisoli	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa acidisoli	0.98 %
Anaeromyxobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae	0.98 %
Nitrospira	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	0.98 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.02 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.73 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	3.92 %
Anaeromyxobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter	0.98 %
Acidicapsa acidisoli	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa acidisoli	0.98 %
Nitrospira	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	0.98 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.02 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.73 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	3.92 %
unclassified Anaeromyxobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter → unclassified Anaeromyxobacter	0.98 %
Acidicapsa acidisoli	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa acidisoli	0.98 %
Nitrospira	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	0.98 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.02 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.73 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	3.92 %
Anaeromyxobacter sp. SG29	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter → unclassified Anaeromyxobacter → Anaeromyxobacter sp. SG29	0.98 %
Acidicapsa acidisoli	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa acidisoli	0.98 %
Nitrospira	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	0.98 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001593\|JGI12635J15846_10000641	All Organisms → cellular organisms → Bacteria	30188	Open in IMG/M
3300001593\|JGI12635J15846_10037669	All Organisms → cellular organisms → Bacteria	3798	Open in IMG/M
3300001593\|JGI12635J15846_10053936	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3049	Open in IMG/M
3300002245\|JGIcombinedJ26739_100250154	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1660	Open in IMG/M
3300004080\|Ga0062385_10102992	Not Available	1386	Open in IMG/M
3300004080\|Ga0062385_10303624	All Organisms → cellular organisms → Bacteria	916	Open in IMG/M
3300004082\|Ga0062384_100473492	Not Available	824	Open in IMG/M
3300004091\|Ga0062387_101443171	Not Available	549	Open in IMG/M
3300004102\|Ga0058888_1099886	Not Available	695	Open in IMG/M
3300004479\|Ga0062595_101906821	Not Available	569	Open in IMG/M
3300005534\|Ga0070735_10000349	All Organisms → cellular organisms → Bacteria → Acidobacteria	52959	Open in IMG/M
3300005534\|Ga0070735_10599549	Not Available	653	Open in IMG/M
3300005538\|Ga0070731_10030619	All Organisms → cellular organisms → Bacteria	3644	Open in IMG/M
3300005538\|Ga0070731_10426238	Not Available	882	Open in IMG/M
3300005541\|Ga0070733_10391107	Not Available	925	Open in IMG/M
3300005591\|Ga0070761_10045875	All Organisms → cellular organisms → Bacteria → Acidobacteria	2456	Open in IMG/M
3300005591\|Ga0070761_10498378	All Organisms → cellular organisms → Bacteria → Acidobacteria	751	Open in IMG/M
3300005602\|Ga0070762_10053806	Not Available	2227	Open in IMG/M
3300005610\|Ga0070763_10358712	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	812	Open in IMG/M
3300005712\|Ga0070764_10021571	All Organisms → cellular organisms → Bacteria	3211	Open in IMG/M
3300005712\|Ga0070764_10242349	Not Available	1024	Open in IMG/M
3300005712\|Ga0070764_10322308	Not Available	897	Open in IMG/M
3300005712\|Ga0070764_10622225	Not Available	660	Open in IMG/M
3300006176\|Ga0070765_100744875	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	926	Open in IMG/M
3300006176\|Ga0070765_101753303	Not Available	583	Open in IMG/M
3300006893\|Ga0073928_10049812	Not Available	3788	Open in IMG/M
3300007982\|Ga0102924_1208978	All Organisms → cellular organisms → Bacteria	839	Open in IMG/M
3300009633\|Ga0116129_1005447	All Organisms → cellular organisms → Bacteria → Proteobacteria	5584	Open in IMG/M
3300011120\|Ga0150983_10844451	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	527	Open in IMG/M
3300020579\|Ga0210407_10684181	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	796	Open in IMG/M
3300020580\|Ga0210403_10130970	Not Available	2045	Open in IMG/M
3300020581\|Ga0210399_10819671	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	759	Open in IMG/M
3300020582\|Ga0210395_10010413	All Organisms → cellular organisms → Bacteria → Acidobacteria	6912	Open in IMG/M
3300020583\|Ga0210401_10060353	All Organisms → cellular organisms → Bacteria → Acidobacteria	3572	Open in IMG/M
3300020583\|Ga0210401_10243041	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1659	Open in IMG/M
3300020583\|Ga0210401_10430978	Not Available	1181	Open in IMG/M
3300021088\|Ga0210404_10770905	Not Available	549	Open in IMG/M
3300021088\|Ga0210404_10852727	Not Available	521	Open in IMG/M
3300021181\|Ga0210388_10192301	All Organisms → cellular organisms → Bacteria	1784	Open in IMG/M
3300021181\|Ga0210388_10441706	Not Available	1143	Open in IMG/M
3300021402\|Ga0210385_10253011	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1295	Open in IMG/M
3300021402\|Ga0210385_10319933	Not Available	1153	Open in IMG/M
3300021404\|Ga0210389_10370098	Not Available	1126	Open in IMG/M
3300021405\|Ga0210387_10236144	Not Available	1596	Open in IMG/M
3300021405\|Ga0210387_11144196	Not Available	677	Open in IMG/M
3300021407\|Ga0210383_10004148	All Organisms → cellular organisms → Bacteria	12847	Open in IMG/M
3300021407\|Ga0210383_10165842	Not Available	1882	Open in IMG/M
3300021407\|Ga0210383_11152608	Not Available	653	Open in IMG/M
3300021407\|Ga0210383_11226882	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	629	Open in IMG/M
3300021407\|Ga0210383_11310903	Not Available	605	Open in IMG/M
3300021420\|Ga0210394_10513078	Not Available	1055	Open in IMG/M
3300021433\|Ga0210391_10003457	All Organisms → cellular organisms → Bacteria	13376	Open in IMG/M
3300021474\|Ga0210390_10643576	Not Available	886	Open in IMG/M
3300021474\|Ga0210390_10899112	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	728	Open in IMG/M
3300021474\|Ga0210390_11586995	Not Available	515	Open in IMG/M
3300021559\|Ga0210409_10693134	All Organisms → cellular organisms → Bacteria	889	Open in IMG/M
3300022502\|Ga0242646_1038721	Not Available	512	Open in IMG/M
3300022522\|Ga0242659_1050554	Not Available	734	Open in IMG/M
3300022557\|Ga0212123_10019489	All Organisms → cellular organisms → Bacteria → Acidobacteria	7887	Open in IMG/M
3300022709\|Ga0222756_1029356	Not Available	749	Open in IMG/M
3300022716\|Ga0242673_1020967	Not Available	929	Open in IMG/M
3300022722\|Ga0242657_1225376	Not Available	528	Open in IMG/M
3300022724\|Ga0242665_10222163	Not Available	631	Open in IMG/M
3300027158\|Ga0208725_1053570	Not Available	605	Open in IMG/M
3300027545\|Ga0209008_1026956	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1339	Open in IMG/M
3300027545\|Ga0209008_1067604	Not Available	807	Open in IMG/M
3300027559\|Ga0209222_1009688	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1975	Open in IMG/M
3300027567\|Ga0209115_1142821	Not Available	537	Open in IMG/M
3300027575\|Ga0209525_1014256	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1925	Open in IMG/M
3300027575\|Ga0209525_1045971	Not Available	1067	Open in IMG/M
3300027605\|Ga0209329_1124012	Not Available	568	Open in IMG/M
3300027609\|Ga0209221_1024581	Not Available	1599	Open in IMG/M
3300027648\|Ga0209420_1000981	All Organisms → cellular organisms → Bacteria → Acidobacteria	14071	Open in IMG/M
3300027676\|Ga0209333_1011564	All Organisms → cellular organisms → Bacteria → Acidobacteria	2621	Open in IMG/M
3300027795\|Ga0209139_10040830	All Organisms → cellular organisms → Bacteria	1640	Open in IMG/M
3300027853\|Ga0209274_10292593	All Organisms → cellular organisms → Bacteria → Acidobacteria	836	Open in IMG/M
3300027855\|Ga0209693_10417932	Not Available	647	Open in IMG/M
3300027867\|Ga0209167_10264560	Not Available	925	Open in IMG/M
3300027869\|Ga0209579_10041555	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa acidisoli	2471	Open in IMG/M
3300027869\|Ga0209579_10378859	Not Available	766	Open in IMG/M
3300027869\|Ga0209579_10691329	Not Available	552	Open in IMG/M
3300027879\|Ga0209169_10069055	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1827	Open in IMG/M
3300027908\|Ga0209006_10003278	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	14733	Open in IMG/M
3300027986\|Ga0209168_10417194	Not Available	652	Open in IMG/M
3300028906\|Ga0308309_10021036	All Organisms → cellular organisms → Bacteria	4305	Open in IMG/M
3300028906\|Ga0308309_10070814	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	2599	Open in IMG/M
3300028906\|Ga0308309_11179606	All Organisms → cellular organisms → Bacteria → Acidobacteria	661	Open in IMG/M
3300031231\|Ga0170824_126526824	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	827	Open in IMG/M
3300031708\|Ga0310686_104050591	Not Available	713	Open in IMG/M
3300031708\|Ga0310686_106152677	All Organisms → cellular organisms → Bacteria	3083	Open in IMG/M
3300031708\|Ga0310686_107548735	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter → unclassified Anaeromyxobacter → Anaeromyxobacter sp. SG29	2836	Open in IMG/M
3300031715\|Ga0307476_10156753	All Organisms → cellular organisms → Bacteria → Acidobacteria	1638	Open in IMG/M
3300031715\|Ga0307476_10180265	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1528	Open in IMG/M
3300031718\|Ga0307474_10026431	All Organisms → cellular organisms → Bacteria → Acidobacteria	4242	Open in IMG/M
3300031718\|Ga0307474_10104358	Not Available	2120	Open in IMG/M
3300031754\|Ga0307475_10724866	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	792	Open in IMG/M
3300031820\|Ga0307473_10642056	Not Available	738	Open in IMG/M
3300031823\|Ga0307478_10383530	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1162	Open in IMG/M
3300031823\|Ga0307478_11094498	Not Available	665	Open in IMG/M
3300031962\|Ga0307479_10232543	All Organisms → cellular organisms → Bacteria → Acidobacteria	1818	Open in IMG/M
3300031962\|Ga0307479_10266313	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1693	Open in IMG/M
3300032180\|Ga0307471_100462110	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1411	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.18%
Aquatic	Environmental → Aquatic	8.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	91.18%
Freshwater	Environmental → Aquatic → Freshwater	5.88%
Thermal Springs	Environmental → Aquatic → Thermal Springs	2.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	57.84%
Loam	Environmental → Terrestrial → Soil → Loam	33.33%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	5.88%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	2.94%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	44.12%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	33.33%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.75%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	4.90%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	2.94%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.98%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	32.35%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	17.65%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	15.69%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	10.78%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	9.80%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	4.90%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.94%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004102	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF212 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007982	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG	Environmental	Open in IMG/M
3300009633	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022502	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-19-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022522	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022709	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022716	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022722	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300027158	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF011 (SPAdes)	Environmental	Open in IMG/M
3300027545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027559	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027567	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027575	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027605	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027609	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027648	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027676	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027986	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12635J15846_1000064131	3300001593	Forest Soil	MYYFASGEWFVERQGRLNSQQLKDLSDELAALTKQQSDARLTEIFIRMTEAEIKAFDLRKERISRIHIILSEHDAKR*
JGI12635J15846_100376695	3300001593	Forest Soil	VERQGRLNSHQLRDLSDELAALTKQQSDARLREVFIPMSNKEIEAFDLRTQRISKIHVILSENDTKRR*
JGI12635J15846_100539364	3300001593	Forest Soil	VERQGRLDAQQLKDLSDELAALTKQQSDARLLEVFVRMSQQEIKVFDLRTQRISKIHVILSEHDAKR*
JGIcombinedJ26739_1002501543	3300002245	Forest Soil	VAQGRLNSQQLKDLSDELASLTKQQSDARLTEVFIRMSAQEIRAFDLRTERISKIHAILSEHDAKR*
Ga0062385_101029921	3300004080	Bog Forest Soil	MVRLNSQQLKDLSDELVILSKQQSDARLLEVFIHMNEPEIKAFDVRKERISQIHVILSEHDAKR*
Ga0062385_103036243	3300004080	Bog Forest Soil	MGRLDPQQLKELSDELAFLTKQQSDARLMEVFVGMTKQEIDDFDLRTQRISRIHVLLSDHDAKR*
Ga0062384_1004734922	3300004082	Bog Forest Soil	MVRLNSQQLKDLSDELVILSKQQSDARLLEVFIHMNEPEIKAFDLRKERISQIHVILSEHDAKR*
Ga0062387_1014431712	3300004091	Bog Forest Soil	MSRLNQKQLRDLSDELAALSKQQSDARLLEVYVRMSPQEMEAFDLRTQRISHIHIILSEHDAKR*
Ga0058888_10998861	3300004102	Forest Soil	VARRRKLNLQELNELTDELAVLMKQQSDARLTEDFVRMNPKEIDDFDLRTQRIYQIHVILSEHDARR*
Ga0062595_1019068212	3300004479	Soil	LRDLRDELARLMKQQSDARLTEVFVRMTRQEIEAFDLRTQRISQIHVLLREHDAKR*
Ga0070735_1000034952	3300005534	Surface Soil	VGRQARLSSQKLKALSDELSAIIKQQYDARLTEVYVRMTPQEISAFDLQKERISQIHVILSEHDAKR*
Ga0070735_105995492	3300005534	Surface Soil	VERQGRLNSQQLGDLSDELAALTKQQSGARLTEVFVRMTPEEIRAFDLRKERISRIHVILSEHDTKR*
Ga0070731_100306195	3300005538	Surface Soil	MPRLNSQQLSDLSDELVALNKQQSDARKTEVFIRMTQAEIEALDLRQERISKIHVILSEHDAKR*
Ga0070731_104262382	3300005538	Surface Soil	MEPGRLNPQQLKHLSDELANLTKQQSDARLTEEFVRMTPAEIKAFDLRAERISKIHVILSEHDAKR*
Ga0070733_103911072	3300005541	Surface Soil	LTRLNSQQLRDLSDELAALIKQQSDARKMEVFIRMNQEEIEAFDLRQERISKIHVILSEHDAKR*
Ga0070761_100458757	3300005591	Soil	VKRRGRLNSKQLQDLSDELAALTKRQFDARMLEVFIPMSKKEIEAFDLRTQRISHIHVLLSEHDAKR*
Ga0070761_104983781	3300005591	Soil	VARQRRIDSQQVKDLTDELAVLMKQQSDARMTEVFIRMTAEESAAFDLRAQRISRIHVLLSEHDVKR*
Ga0070762_100538062	3300005602	Soil	VARQGRLNEVQLKELSDELATLTKQQYEARLLEVFIPMSKKEIQAFDLRTERISKIHVLLAEHDAKQ*
Ga0070763_103587122	3300005610	Soil	VARQGRLNEVQLKELSDELATLTKQQYEARLLEVFIPMSKKEIQAFDLRTERISKIHVLLAEHDAKR
Ga0070764_100215716	3300005712	Soil	VARQGRLNEKQLKELSDELSALTKQQYEARLLEVFIPMSKKEIEAFDLRTGRISQIHVILSEHDAKR*
Ga0070764_102423493	3300005712	Soil	MGQQGRLNSQQLRDLSDELAALTKQQSDARLTEVFIRMTTEEINAFNRRRERISQIYVLLGEHDAKR*
Ga0070764_103223082	3300005712	Soil	LTREGRLTSQQLKDLSDELAALSKQQSDARLLEPFIAMTKAEVEAFDLRAARISQIYVMLSEHDSKR*
Ga0070764_106222253	3300005712	Soil	NELTDELAVLMKQQSDARLTEDFVRMNPKEIDDFDLRTQRIYQIHVILSEHDARR*
Ga0070765_1007448753	3300006176	Soil	MEPRGRLNSEQLKDLSDELATLMKQQSDARLLEVFIHMTQQEIRAFDLRTERISKIHIILSEHDAKR*
Ga0070765_1017533031	3300006176	Soil	VARQGRLNEVQLKELSDELATLTKQQYEARLLEVFIPMSKKEIQAFDLRTERISKIHV
Ga0073928_100498127	3300006893	Iron-Sulfur Acid Spring	MARLNSQQLNDLSNELAALAKQQSDARLDEVFIRMTEQEIKAFDLRKERISKIYVILNEHDAKR*
Ga0102924_12089781	3300007982	Iron-Sulfur Acid Spring	MSRLDPQQLRDLSDELAGLMKQQSDARLTEVFVRMTRQEIEAFDLRTQRISQIHIILNEHDAKR*
Ga0116129_10054471	3300009633	Peatland	LIINLEVNVEQQGRLNTLQLRDLSDELASLMKQQSDARLLEVFIRMNEKEIRAFDRRSDRISKIHIILREHDTKR*
Ga0150983_108444511	3300011120	Forest Soil	LVAPRQGRLNERQLKALSDELATLMKQQSDARLTDVFIRMSQKEIDAFDLRQERISKIHVILSEHDAKR*
Ga0210407_106841813	3300020579	Soil	MEPQGRLNSQQLKDLSDELAALMKQQSDARLTEVYVRMTQQEIKAFDLRKERISKIHVILSEHDAKR
Ga0210403_101309703	3300020580	Soil	VARRRKLNLQELNELTDELAVLMKQQSDARLTEDFVRMNPKEIDDFDLRTQRIYQIHVILSEHDARR
Ga0210399_108196713	3300020581	Soil	MEPRGRLNSQQLKDLSDELATLMKQQSDARLLEVFIHMTQQEIRAFDLRTERISKIHVILSEHDAKR
Ga0210395_100104134	3300020582	Soil	VARQGRLNEVQLKELSDELATLTKQQYEARLLEVFIPMSKKEIQAFDLRTERISKIHVLLAEHDAKQ
Ga0210401_100603532	3300020583	Soil	MERQGRLNSQQLKDLSDELAALMKQQSDARLTEVFVRMTQQEIGAFDLRAQRISKIHVILSEHDAKR
Ga0210401_102430412	3300020583	Soil	VAPRQGRLNERQLKALSDELATLMKQQSDARLTDVFIRMSQKEIDAFDLRQERISKIHVILSEHDAKR
Ga0210401_104309781	3300020583	Soil	VERQGRLTTQQLKDLNDELVILTKQQSDARLTEVFIRMNQKEIDAFDLREERISKIHVLLSEHDTKL
Ga0210404_107709051	3300021088	Soil	VARQGRLNEVQLKELSDELATLTKQQYEARLLEVFIPMSKKEIQAFDLRTERISKIHDA
Ga0210404_108527271	3300021088	Soil	MERQGRLTSQQLKELSDELAALMKQQSDARLTEVYIRMTKDEIQAFDLRAERISKIHVILSEHDAKR
Ga0210388_101923011	3300021181	Soil	MSRLNAQQLRDLSDELTVLTKQQSEARLLEVFIRMNEQEVKAFELRARRISQIHVILSEHDAKRKPHIPLA
Ga0210388_104417061	3300021181	Soil	MGQQGRLNSQQLRDLSDELAALTKQQSDARLTEVFIRMTTEEINAFNLRRERISQIHVLLGEHDAKR
Ga0210385_102530111	3300021402	Soil	MSVRYLNSQQLKELSDELASLAKQQSDARQLEIFVRMNPHEIEAFDLRTQRISKIHIMLSEHDAKRQTYMNSQQH
Ga0210385_103199331	3300021402	Soil	VARQSRLNSQQLNDLSDELAALLKQQADARLMEVFIPMSEQEIKAFDLRTERISKIHVILSEHDAKR
Ga0210389_103700983	3300021404	Soil	VARRRKLNLQELNELTDELAVLMKQQSDARLTEDFVRMNPKEIDDFDLRTQRIYQIHVILSEPDARRQL
Ga0210387_102361442	3300021405	Soil	VKRQSRLNSQQLKDLNDELVILTKQQSDARLTEVFIRMNQKEIDAFDLRQERISKIHVLLSEYDAKR
Ga0210387_111441962	3300021405	Soil	MSRFNAQQLRDLSDELTVLKKQQSEARLLEVFIRMNEQEVEAFELRAQRISQIHVILSEHDANRKPHIPLA
Ga0210383_1000414815	3300021407	Soil	VERPGRLNSQQLKDLSDELAALTKQQSDARLLEVFVRMSEAEIKAFDLRTQRISRIHVLLSEHDSRR
Ga0210383_101658422	3300021407	Soil	MKHLGTATTIAQRETKPLCLGERFVVRQGRLNEKQLKVLSDELATLMKEQYEARLLEVFIPMSKKEIEAFDLRTEGISRIHVILSEHDANR
Ga0210383_111526081	3300021407	Soil	MRLNSQQLKDLSDELFALMKQQTDARSTEVFVRMTSEEIRAFDLRAERISKIHAVLGEHDAKGQSAAPRH
Ga0210383_112268821	3300021407	Soil	PCLGERLVAPRQGRLNERQLKALSDELATLMKQQSDARLTDVFIRMSQKEIDAFDLRQERISKIHVILSEHDAKR
Ga0210383_113109032	3300021407	Soil	VKRRGRLNSKQLQDLSDELAALTKRQFDARMLEVFIPMSKKEIEAFDLRTQRISHIHVLLSEHDAKR
Ga0210394_105130781	3300021420	Soil	MEPQGRLNSQQLKDLSDELAALMKQQSDARLTEVYVRMTQQEIKAFDLRKERISKIHVILSEHDA
Ga0210391_100034573	3300021433	Soil	VARQGRLNEKQLKELSDELSALTKQQYEARLLEVFIPMSKKEIEAFDLRTGRISQIHVILSEHDAKR
Ga0210390_106435761	3300021474	Soil	NLQELNELTDELAVLMKQQSDARLTEDFVRMNPKEIDDFDLRTQRIYQIHVILSEHDARR
Ga0210390_108991122	3300021474	Soil	QWETNPPCLGERLVAPRQGRLNERQLKALSDELATLMKQQSDARLTDVFIRMSQKEIDAFDLRQERISKIHVILSEHDAKR
Ga0210390_115869951	3300021474	Soil	VARRRKLNLQELNELTDELAVLMKQQSDARLTEDFVRMNPKEIDDFDLRTQRIYQI
Ga0210409_106931342	3300021559	Soil	MERQDRLNSQQLKDLSDELAALMKQQSDARLTEVFVRMTQQEIGAFDLRAQRISKIHVILSEHDAKR
Ga0242646_10387212	3300022502	Soil	KLNLQELNELTDELAVLMKQQSDARLTEDFVRMNPKEIDDFDLRTQRIYQIHVILSEHDARR
Ga0242659_10505541	3300022522	Soil	VARRRKLNLQELNELTGELAVLMKQQSDARLTEDFVRMNPKEIDDFDLRTQRIYQIHVILSEHDARR
Ga0212123_100194893	3300022557	Iron-Sulfur Acid Spring	MARLNSQQLNDLSNELAALAKQQSDARLDEVFIRMTEQEIKAFDLRKERISKIYVILNEHDAKR
Ga0222756_10293561	3300022709	Soil	LNELTDELAVLMKQQSDARLTEDFVRMNPKEIDDFDLRTQRIYQIHVILSEHDARR
Ga0242673_10209673	3300022716	Soil	QGERLVARQGRLNEVQLKELSDELATLTKQQYEARLLEVFIPMSKKEIQAFDLRTERISKIHVLLAEHDAKQ
Ga0242657_12253761	3300022722	Soil	ARRRKLNLQELNELTDELAVLMKQQSDARLTEDFVRMNPKEIDDFDLRTQRIYQIHVILSEHDARR
Ga0242665_102221631	3300022724	Soil	VARRRKLNLQELNELTYELAVLMKQQSDARLTEDFVRMNPKEIDDFDLRTQRIYQIHVILSEHDARR
Ga0208725_10535701	3300027158	Forest Soil	KQLQDLSDELAALTKRQFDARMLEVFIPMSKKEIEAFDLRTQRISHIHVLLSEHDAKR
Ga0209008_10269561	3300027545	Forest Soil	VERQGRLNSHQLRDLSDELAALTKQQSDARLREVFIPMSNKEIEAFDLRTQRISKIHVILSEHDAKRR
Ga0209008_10676042	3300027545	Forest Soil	VGQGRLNSQQLKDLSDELATLAKQQSDARLTEVFIRMNKQEIEAFDLRKERISKIYANLSEHDAKRIAG
Ga0209222_10096881	3300027559	Forest Soil	VERQGRLNSQQLKDLSDELAALTKQQSDARLTEIFIRMTEAEIKAFDLRKERISRIHIILSEH
Ga0209115_11428212	3300027567	Forest Soil	LNSQQLKDLSDELASLTKQQSDARLTEVFIRMSAQEIRAFDLRTERISKIHAILSEHDAK
Ga0209525_10142563	3300027575	Forest Soil	VAQGRLNSQQLKDLSDELASLTKQQSDARLTEVFIRMSAQEIRAFDLRTERISKIHAILSEHDAKR
Ga0209525_10459712	3300027575	Forest Soil	MYYFASGEWFVERQGRLNSQQLKDLSDELAALTKQQSDARLTEIFIRMTEAEIKAFDLRKERISRIHIILSEHDAKR
Ga0209329_11240121	3300027605	Forest Soil	MGRLNSQQIKDLSDELVALSKQQSDARLTEVFIRMTTQEIEAFDLRAERISKILGILGEH
Ga0209221_10245813	3300027609	Forest Soil	VERQGRLNSQQLKDLSDELAALTKQQSDARLTEIFIRMTEAEIKAFDLRKERISRIHIILSEHDAKR
Ga0209420_100098112	3300027648	Forest Soil	VERQGRLDAQQLKDLSDELAALTKQQSDARLLEVFVRMSQQEIKVFDLRTQRISKIHVILSEHDAKR
Ga0209333_10115641	3300027676	Forest Soil	VERQGRLNSHQLRDLSDELAALTKQQSDARLREVFIPMSNKEIEAFDLRTQRISKIHVILSENDTKRR
Ga0209139_100408302	3300027795	Bog Forest Soil	MSRLNQKQLRDLSDELAALSKQQSDARLLEVYVRMSPQEMEAFDLRTQRISHIHIILSEHDAKR
Ga0209274_102925932	3300027853	Soil	VARQRRIDSQQVKDLTDELAVLMKQQSDARMTEVFIRMTAEESAAFDLRAQRISRIHVLLSEHDVKR
Ga0209693_104179321	3300027855	Soil	VARRRKLNLQELNELTDELAVLMKQQSDARLTEDFVRMNPKEIDDFDLRTQRIYQIHVILSEHDA
Ga0209167_102645601	3300027867	Surface Soil	LTRLNSQQLRDLSDELAALIKQQSDARKMEVFIRMNQEEIEAFDLRQERISKIHVILSEHDAKR
Ga0209579_100415553	3300027869	Surface Soil	MPRLNSQQLSDLSDELVALNKQQSDARKTEVFIRMTQAEIEALDLRQERISKIHVILSEHDAKR
Ga0209579_103788591	3300027869	Surface Soil	VTRLNSQQLHDLSNELAVLIKQQSDARLMEVLIRMNQAEIEAFDLRQERISKIHVILSEHDAKR
Ga0209579_106913291	3300027869	Surface Soil	MEPGRLNPQQLKHLSDELANLTKQQSDARLTEEFVRMTPAEIKAFDLRAERISKIHVILSEHDAKR
Ga0209169_100690551	3300027879	Soil	VARQGRLNEVQLKELSDELATSTKQQYEARLLEVFIPMSKKEIQAFDLRTERISKIHVLLAEHDAKQ
Ga0209006_1000327812	3300027908	Forest Soil	MRLSPGQLQDLSDELAALTKQQSDARMTEVFIPMSAAEIEAFDRRKERISRIYVILSNHDAKR
Ga0209168_104171941	3300027986	Surface Soil	VERQGRLNSQQLGDLSDELAALTKQQSGARLTEVFVRMTPEEIRAFDLRKERISRIHVILSEHDTKR
Ga0308309_100210362	3300028906	Soil	VARQGRLNEKQLKELSDELSALTKQQYEARLLEVFIPMSKEIEAFDLRTGRISQIHVILSEHDAKR
Ga0308309_100708144	3300028906	Soil	MEPRGRLNSEQLKDLSDELATLMKQQSDARLLEVFIHMTQQEIRAFDLRTERISKIHIILSEHDAKR
Ga0308309_111796061	3300028906	Soil	MSRLTAQQLRDLSDELIALTKQQSEARLLEVFIRMNEQEVKAFELRAQRISQIHVILSEHDAKRELHILPP
Ga0170824_1265268241	3300031231	Forest Soil	MLGHQGRLNPQELKVLSDELATLMKQQSDARLTEVYVRMTRQEIEAFDLRTQRISKIHVILSEHDAKR
Ga0310686_1040505912	3300031708	Soil	MGRLNPQRLKELSDELASLAKQQYEARQTEVFFRMTKDEIQAFDARKARISQIHILLNAHDDQR
Ga0310686_1061526772	3300031708	Soil	MGRQGRLNTQQLKELSDELAALSKQQYDARQNEIFFRMTEEEIKAFDLRKERISKIHVTLSEHDTKR
Ga0310686_1075487352	3300031708	Soil	VARQGRLNEKQLKELSDELATLMNQQYEARLLEVFIPMSKKEIEAFDLRTERVSKIHVILSEHDAKR
Ga0307476_101567533	3300031715	Hardwood Forest Soil	VEGQGRLNSKQLTDLSDELVALMKQQSDARLTEVYVRMTPQEIKAFDLRTERISQIYVLLSEHDAKR
Ga0307476_101802655	3300031715	Hardwood Forest Soil	VAQQRRLNSQQLKDLNDELSALMKQQHDARLTEVFVRMTPQEIKAFDLRTERISKIHVILSEHDA
Ga0307474_100264315	3300031718	Hardwood Forest Soil	VTRRLNSQQLNELSDELASLMKQQSDARLMEVFVRMSEQEIKAFDLRTARISQIHVILSEHDAKR
Ga0307474_101043582	3300031718	Hardwood Forest Soil	MGQQGRLNSQQLRDLSDELAALTKQQSDARLTEVFIRMTTEEINAFNRRRERISQIYVLLGEHDAKR
Ga0307475_107248661	3300031754	Hardwood Forest Soil	FVTRRLNSQQLNELSDELASLMKQQSDARLMEVFVRMSEQETKAFDLRTARISHIHVILSEHDAKR
Ga0307473_106420561	3300031820	Hardwood Forest Soil	MADPKSRLNSQQLKELSDELASLGEQQCVARQTEMFIRMTPQEIEAFDLRTQRISKIHIMLSEHDAKR
Ga0307478_103835303	3300031823	Hardwood Forest Soil	MPRLNSQQLSDLSDELVALNKQQFDARKTEVFIRMTQAEIEAFDLRQERISKIHVILGEHDAKR
Ga0307478_110944981	3300031823	Hardwood Forest Soil	VARLNSQQLNDLSDELSALIKQQSDARLMEVFIRMTKAEIEAFDLRQERISKIHVILSEHDAKR
Ga0307479_102325434	3300031962	Hardwood Forest Soil	VAQEGRLTSQQLKDLSDELSALMKQQNDARLTEVFVRMTPHEVKAFDLRTDRISRIHVILSEHDAKR
Ga0307479_102663131	3300031962	Hardwood Forest Soil	VAHRLNSQQLNELSDELATLMKQQSDARLMEVFVRMSEQETKAFDLRTARISQIHVILSEHDAKR
Ga0307471_1004621102	3300032180	Hardwood Forest Soil	MADPKGRLNSQQLKELSDELASLGEQQSDARQTEMFIRMTPQEIEAFDLRTQRISKIHIMLSEHDAKR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101562

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences