Metagenome / Metatranscriptome Family F101524

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F101524
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	69 residues
Representative Sequence	MVDGENKKSLMKRFQDLARRILGRKPSPPPADPYAYRMAPVRRGPKGRSGAAVAEIEDDSHRSFPPRRQ
Number of Associated Samples	74
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	91.09 %
% of genes near scaffold ends (potentially truncated)	14.71 %
% of genes from short scaffolds (< 2000 bps)	57.84 %
Associated GOLD sequencing projects	65
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.27

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (80.392 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil (17.647 % of family members)
Environment Ontology (ENVO)	Unclassified (34.314 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (58.824 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 18.56% β-sheet: 0.00% Coil/Unstructured: 81.44%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.27
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.27
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF00448	SRP54	27.45
PF00383	dCMP_cyt_deam_1	12.75
PF01872	RibD_C	12.75
PF02881	SRP54_N	11.76
PF00005	ABC_tran	3.92
PF01966	HD	2.94
PF00677	Lum_binding	2.94
PF04014	MazE_antitoxin	1.96
PF04794	YdjC	1.96
PF07045	DUF1330	1.96
PF02464	CinA	0.98
PF13505	OMP_b-brl	0.98
PF02075	RuvC	0.98
PF09594	GT87	0.98
PF13722	CstA_5TM	0.98
PF07479	NAD_Gly3P_dh_C	0.98
PF07676	PD40	0.98
PF01833	TIG	0.98
PF01408	GFO_IDH_MocA	0.98
PF03884	YacG	0.98
PF01850	PIN	0.98
PF02743	dCache_1	0.98
PF04972	BON	0.98
PF07238	PilZ	0.98
PF04773	FecR	0.98
PF01326	PPDK_N	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	12.75
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	12.75
COG0307	Riboflavin synthase alpha chain	Coenzyme transport and metabolism [H]	2.94
COG3394	Chitooligosaccharide deacetylase ChbG, YdjC/CelG family	Carbohydrate transport and metabolism [G]	1.96
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	1.96
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.98
COG0574	Phosphoenolpyruvate synthase/pyruvate phosphate dikinase	Carbohydrate transport and metabolism [G]	0.98
COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	Replication, recombination and repair [L]	0.98
COG1546	Nicotinamide mononucleotide (NMN) deamidase PncC	Coenzyme transport and metabolism [H]	0.98
COG2972	Sensor histidine kinase YesM	Signal transduction mechanisms [T]	0.98
COG3024	Endogenous inhibitor of DNA gyrase, YacG/DUF329 family	Replication, recombination and repair [L]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	80.39 %
Unclassified	root	N/A	19.61 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	80.39 %
Unclassified	root	N/A	19.61 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	80.39 %
Unclassified	root	N/A	19.61 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	67.65 %
Unclassified	root	N/A	19.61 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.96 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	41.18 %
Unclassified	root	N/A	19.61 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	8.82 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.96 %

Name	Rank	Taxonomy	Distribution
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	41.18 %
Unclassified	root	N/A	19.61 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.82 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.96 %

Name	Rank	Taxonomy	Distribution
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	40.20 %
Unclassified	root	N/A	19.61 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.82 %
Reyranellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae	1.96 %

Name	Rank	Taxonomy	Distribution
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	31.37 %
Unclassified	root	N/A	19.61 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.82 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	1.96 %
Reyranella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella	1.96 %

Name	Rank	Taxonomy	Distribution
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	27.45 %
Unclassified	root	N/A	19.61 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.82 %
Acidobacterium ailaaui	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui	1.96 %
unclassified Reyranella	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → unclassified Reyranella	1.96 %

Name	Rank	Taxonomy	Distribution
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	27.45 %
Unclassified	root	N/A	19.61 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.82 %
Reyranella sp. CPCC 100927	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → unclassified Reyranella → Reyranella sp. CPCC 100927	1.96 %
Acidobacterium ailaaui	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui	1.96 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001471\|JGI12712J15308_10007137	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3089	Open in IMG/M
3300001471\|JGI12712J15308_10100648	Not Available	733	Open in IMG/M
3300001632\|JGI20235J16296_1006950	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	578	Open in IMG/M
3300002245\|JGIcombinedJ26739_100118810	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2487	Open in IMG/M
3300004080\|Ga0062385_10021273	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2447	Open in IMG/M
3300004082\|Ga0062384_100002679	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	5675	Open in IMG/M
3300004082\|Ga0062384_100556457	All Organisms → cellular organisms → Bacteria → Acidobacteria	769	Open in IMG/M
3300005541\|Ga0070733_10005812	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	8103	Open in IMG/M
3300005541\|Ga0070733_10078766	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	2083	Open in IMG/M
3300005541\|Ga0070733_10184033	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → unclassified Reyranella → Reyranella sp. CPCC 100927	1364	Open in IMG/M
3300005591\|Ga0070761_10000799	All Organisms → cellular organisms → Bacteria	19970	Open in IMG/M
3300005591\|Ga0070761_10082128	All Organisms → cellular organisms → Bacteria → Acidobacteria	1839	Open in IMG/M
3300005591\|Ga0070761_10159278	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1325	Open in IMG/M
3300005591\|Ga0070761_10889947	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	562	Open in IMG/M
3300005602\|Ga0070762_10391620	Not Available	893	Open in IMG/M
3300005602\|Ga0070762_10949963	All Organisms → cellular organisms → Bacteria → Acidobacteria	588	Open in IMG/M
3300005610\|Ga0070763_10002399	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	6665	Open in IMG/M
3300005610\|Ga0070763_10095521	All Organisms → cellular organisms → Bacteria → Acidobacteria	1491	Open in IMG/M
3300005712\|Ga0070764_10179487	Not Available	1178	Open in IMG/M
3300005921\|Ga0070766_10170007	All Organisms → cellular organisms → Bacteria → Acidobacteria	1346	Open in IMG/M
3300005995\|Ga0066790_10109485	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1185	Open in IMG/M
3300006052\|Ga0075029_100001036	All Organisms → cellular organisms → Bacteria	15943	Open in IMG/M
3300006059\|Ga0075017_100005064	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui	8270	Open in IMG/M
3300006162\|Ga0075030_100012857	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui	7330	Open in IMG/M
3300006162\|Ga0075030_100503346	All Organisms → cellular organisms → Bacteria	963	Open in IMG/M
3300006176\|Ga0070765_102167921	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	518	Open in IMG/M
3300009525\|Ga0116220_10370580	Not Available	637	Open in IMG/M
3300009624\|Ga0116105_1001512	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5279	Open in IMG/M
3300009624\|Ga0116105_1037879	Not Available	1070	Open in IMG/M
3300009628\|Ga0116125_1001277	All Organisms → cellular organisms → Bacteria → Acidobacteria	11058	Open in IMG/M
3300009665\|Ga0116135_1277482	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300010343\|Ga0074044_10000347	All Organisms → cellular organisms → Bacteria → Acidobacteria	46068	Open in IMG/M
3300012685\|Ga0137397_10875735	Not Available	666	Open in IMG/M
3300014164\|Ga0181532_10000843	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	30571	Open in IMG/M
3300014168\|Ga0181534_10025864	All Organisms → cellular organisms → Bacteria → Acidobacteria	2941	Open in IMG/M
3300014168\|Ga0181534_10339442	Not Available	818	Open in IMG/M
3300014169\|Ga0181531_10399604	Not Available	845	Open in IMG/M
3300014169\|Ga0181531_10439787	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	803	Open in IMG/M
3300014201\|Ga0181537_10011317	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	6614	Open in IMG/M
3300014655\|Ga0181516_10035023	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2565	Open in IMG/M
3300017946\|Ga0187879_10368812	Not Available	796	Open in IMG/M
3300017948\|Ga0187847_10006333	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	8370	Open in IMG/M
3300018007\|Ga0187805_10088772	All Organisms → cellular organisms → Bacteria	1396	Open in IMG/M
3300018007\|Ga0187805_10100016	Not Available	1311	Open in IMG/M
3300018034\|Ga0187863_10015734	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	4727	Open in IMG/M
3300018038\|Ga0187855_10015568	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	5041	Open in IMG/M
3300018038\|Ga0187855_10758809	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	565	Open in IMG/M
3300019260\|Ga0181506_1213780	Not Available	538	Open in IMG/M
3300020580\|Ga0210403_10066720	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2889	Open in IMG/M
3300020581\|Ga0210399_10394831	Not Available	1154	Open in IMG/M
3300020582\|Ga0210395_10000007	All Organisms → cellular organisms → Bacteria → Acidobacteria	356934	Open in IMG/M
3300021181\|Ga0210388_10093469	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2567	Open in IMG/M
3300021407\|Ga0210383_10000786	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	28945	Open in IMG/M
3300021407\|Ga0210383_11765535	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300021433\|Ga0210391_10546624	Not Available	909	Open in IMG/M
3300021474\|Ga0210390_11070251	All Organisms → cellular organisms → Bacteria	656	Open in IMG/M
3300021474\|Ga0210390_11152608	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
3300021474\|Ga0210390_11432278	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300021477\|Ga0210398_11095049	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	633	Open in IMG/M
3300024295\|Ga0224556_1002100	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	5647	Open in IMG/M
3300026294\|Ga0209839_10056292	All Organisms → cellular organisms → Bacteria	1412	Open in IMG/M
3300027168\|Ga0208239_1006517	All Organisms → cellular organisms → Bacteria → Acidobacteria	1002	Open in IMG/M
3300027559\|Ga0209222_1015607	All Organisms → cellular organisms → Bacteria → Acidobacteria	1510	Open in IMG/M
3300027590\|Ga0209116_1151150	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300027853\|Ga0209274_10000331	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	31804	Open in IMG/M
3300027853\|Ga0209274_10270556	Not Available	871	Open in IMG/M
3300027855\|Ga0209693_10013850	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3807	Open in IMG/M
3300027867\|Ga0209167_10048301	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2084	Open in IMG/M
3300027867\|Ga0209167_10555629	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → unclassified Reyranella → Reyranella sp. CPCC 100927	629	Open in IMG/M
3300027879\|Ga0209169_10156134	Not Available	1189	Open in IMG/M
3300027879\|Ga0209169_10447319	All Organisms → cellular organisms → Bacteria → Acidobacteria	679	Open in IMG/M
3300027889\|Ga0209380_10104040	All Organisms → cellular organisms → Bacteria → Acidobacteria	1642	Open in IMG/M
3300027898\|Ga0209067_10006203	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	6590	Open in IMG/M
3300027898\|Ga0209067_10186808	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1110	Open in IMG/M
3300027908\|Ga0209006_10014010	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	7265	Open in IMG/M
3300027908\|Ga0209006_10022396	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	5727	Open in IMG/M
3300027908\|Ga0209006_10031957	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	4774	Open in IMG/M
3300027908\|Ga0209006_10277783	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1435	Open in IMG/M
3300027911\|Ga0209698_10026802	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	5347	Open in IMG/M
3300027911\|Ga0209698_10312986	All Organisms → cellular organisms → Bacteria → Acidobacteria	1241	Open in IMG/M
3300028016\|Ga0265354_1015523	Not Available	721	Open in IMG/M
3300028036\|Ga0265355_1010759	Not Available	748	Open in IMG/M
3300028759\|Ga0302224_10409632	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	551	Open in IMG/M
3300028795\|Ga0302227_10211995	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	747	Open in IMG/M
3300028906\|Ga0308309_11028212	Not Available	713	Open in IMG/M
3300029882\|Ga0311368_10498297	All Organisms → cellular organisms → Bacteria → Acidobacteria	877	Open in IMG/M
3300029951\|Ga0311371_10218196	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2802	Open in IMG/M
3300029993\|Ga0302304_10164796	All Organisms → cellular organisms → Bacteria → Acidobacteria	831	Open in IMG/M
3300030053\|Ga0302177_10020865	All Organisms → cellular organisms → Bacteria → Acidobacteria	4186	Open in IMG/M
3300030053\|Ga0302177_10311257	All Organisms → cellular organisms → Bacteria → Acidobacteria	838	Open in IMG/M
3300030057\|Ga0302176_10329011	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	615	Open in IMG/M
3300030503\|Ga0311370_10077335	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	4784	Open in IMG/M
3300030760\|Ga0265762_1004197	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2583	Open in IMG/M
3300030760\|Ga0265762_1188827	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	511	Open in IMG/M
3300030878\|Ga0265770_1063061	Not Available	693	Open in IMG/M
3300031708\|Ga0310686_118685873	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2566	Open in IMG/M
3300031754\|Ga0307475_10272345	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1358	Open in IMG/M
3300032160\|Ga0311301_10537557	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1715	Open in IMG/M
3300032895\|Ga0335074_10105543	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3696	Open in IMG/M
3300033402\|Ga0326728_10188479	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2112	Open in IMG/M
3300033828\|Ga0334850_003544	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3585	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.04%
Host-Associated	Host-Associated	1.96%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	67.65%
Aquatic	Environmental → Aquatic	30.39%
Plants	Host-Associated → Plants	1.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	55.88%
Freshwater	Environmental → Aquatic → Freshwater	22.55%
Peat	Environmental → Terrestrial → Peat	11.76%
Sediment	Environmental → Aquatic → Sediment	7.84%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.96%

Habitat	Taxonomy	Distribution
Loam	Environmental → Terrestrial → Soil → Loam	28.43%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	23.53%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	21.57%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	11.76%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.84%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.92%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.96%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	28.43%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	15.69%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	11.76%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	11.76%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	11.76%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.84%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	3.92%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.96%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.96%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.96%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	17.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.78%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	10.78%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	8.82%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	7.84%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	6.86%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	5.88%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	4.90%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	3.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.92%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.94%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.96%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	1.96%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	1.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.96%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.98%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.98%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.98%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.98%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.98%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001471	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2	Environmental	Open in IMG/M
3300001632	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF001	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009624	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10	Environmental	Open in IMG/M
3300009628	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014655	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_10_metaG	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300019260	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021861	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024295	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 1-5	Environmental	Open in IMG/M
3300026294	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 (SPAdes)	Environmental	Open in IMG/M
3300027168	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF037 (SPAdes)	Environmental	Open in IMG/M
3300027559	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027590	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O1 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028016	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1	Host-Associated	Open in IMG/M
3300028036	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE2	Host-Associated	Open in IMG/M
3300028759	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_1	Environmental	Open in IMG/M
3300028795	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_1	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029882	III_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300029993	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E2_2	Environmental	Open in IMG/M
3300030053	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2	Environmental	Open in IMG/M
3300030057	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_1	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030760	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030878	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M
3300033828	Peat soil microbial communities from Stordalen Mire, Sweden - 715 P1 1-5	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12712J15308_100071372	3300001471	Forest Soil	MVDGENKKSLMKRFQDLARRILGRKPSPPPAAPYAYRMAPVRRGPKGRSGAAVAEIEDDSHRSFPPHRQ*
JGI12712J15308_101006482	3300001471	Forest Soil	MFMRNADRNPSSLKRIRDAIRRFLGWRPPSQPGDPYAYAMAPLRRGPKGRSGAAVAKIEKDSYRSFPPRRR*
JGI20235J16296_10069501	3300001632	Forest Soil	MMDGENKKSPMKRFMDLARRILGRKPSPPPADPYAYRMAPVRRGPKGRSGAAIAEIEDDSQRSFPPRRQ*
JGIcombinedJ26739_1001188102	3300002245	Forest Soil	MVDGENKXSLMKRFQXLARRILGRKPSPPPAXPYAYRMAPVRRGPKGRSGAAVAEIEDDSHRSFPPXRQ*
Ga0062385_100212731	3300004080	Bog Forest Soil	MRNVGPKRSLMKRLQDQMRRLLGREPSPPPADGDPYSYRMAPVRRGPKGRSGAAVAEIEDDSYRAFPPRQR*
Ga0062384_1000026792	3300004082	Bog Forest Soil	MKRFQDLARRMLGREPSPPSGGDPYAYRMAPLKRGPKGRSGAAVAEIEDDSHRSFPPRQR
Ga0062384_1005564571	3300004082	Bog Forest Soil	IGGPMRNVGPKRSLMKRLQDQMRRLLGREPSPPPADGDPYSYRMAPVRRGPKGRSGAAVAEIEDDSYRAFPPRQR*
Ga0070733_100058122	3300005541	Surface Soil	MDAHRRRSLRERIQEFVRQRFGKEPSPPSGDPYAYVTAPLRRGPKGRSGAAVAEIEDDSYRSFPPRQP*
Ga0070733_100787662	3300005541	Surface Soil	MGDGGQKRSLMKKLRDGIRRLLGREPSPPPADPYAYRMAPLRRGPKGRSGAAVAEIEDDSFESFPPRS*
Ga0070733_101840333	3300005541	Surface Soil	MPDQSKDRSLIKRLRDGILRLLRRKSPPEGDPYAYAMAPLRRGPRGRSGAAVAEIEDDSSRTFPPRRQV*
Ga0070761_1000079918	3300005591	Soil	MPTDRQRRSLLKKFGDAIRRLLGRKPSPPPADPYAYAMAPVRRGPKGRSGAAVAEIERSSNDDSYRSFPPRG*
Ga0070761_100821282	3300005591	Soil	MRNDQPRRSLMKKWGDAIRRLLGRKPSPPPADPYAYSMAPLRRGPRGRSGAAVAEIERSTNEDDSYRSFAPRG*
Ga0070761_101592781	3300005591	Soil	MMDGENKKSPMKRFMDLARRILGRKPSPPPADPYAYRMAPVRRGPKGRSGAAVAEIE
Ga0070761_108899472	3300005591	Soil	VRDGQEKKSLVKRLQDSIRRLLGREPSPPPGGDPYAYRMAPVRRGPKGRSGAAVAEIEEDSYQAFPPR*
Ga0070762_103916201	3300005602	Soil	MVDGENKKSLMKRFQDLARRILGRKPSPPPADPYAYRMAPVRRGPKGRSGAAVAEIEDDSHRSFPP
Ga0070762_109499631	3300005602	Soil	MRDGQEKRSLVKRLQDSIRRLLGRGPSPPPGGDPYAYRMAPVRRGPKGRSGAAVAEIEEDSYRAFPPRQP*
Ga0070763_100023997	3300005610	Soil	VRDGQEKKSLVKRLQDSIRRLLGREPSPPPGGDPYAYRMAPVRRGPKGRSGAAVAEIEEDSYQAFPPRQP*
Ga0070763_100955212	3300005610	Soil	MVDGENKKSLMKRFQDLARRILGRKPSPPPADPYAYRMAPVRRGPKGRSGAAVAEIEDDSHRSFPPHRQ*
Ga0070764_101794871	3300005712	Soil	MREGQQKRSLMKRLQEAIRRLLGKEPSPPPTDPYAYTMAPVRRGPKGRSGAAVAEIEEDSYQAFPPRRS*
Ga0070766_101700071	3300005921	Soil	MDGENKKSPMKRFMDLARRILGRKPSPPPADPYAYRMAPVRRGPKGRSGAAIAEIEDDSQRSFPPRRQ*
Ga0066790_101094852	3300005995	Soil	MRDGQQKRSLMKRLEDSIRRLLGRKPSPPPGDPYAYAMAPVRRGPKGRSGAAVAEIEEDGYRSYPPRRS*
Ga0075029_10000103613	3300006052	Watersheds	MQNRNDRSLLKKIKDAIRRLLGKRPPQPGDPYAYVMAPVDRGPKSRSGAAVAEIEDDDYRSFPPRQS*
Ga0075017_1000050647	3300006059	Watersheds	MQNRNDRSLMEKIKDAIRRLLGKRPSQPGDPYAYVMAPVGRGPKDRSGAAVAEIEDDDYRSFPPRG*
Ga0075030_1000128574	3300006162	Watersheds	MADVERRGLITKIRDAIRRLLGREATPPGDPYAYVTAPIRRGPKGRSGAAVAEIEDDSVRSFPPRR*
Ga0075030_1005033462	3300006162	Watersheds	VHDRQQKPSLMKKLGDAIRRLLGKEPSPPADPYAYSMAPLRRGPKGRSGAALAEVEDDSFQSFPPRRQ*
Ga0070765_1021679212	3300006176	Soil	MDGENKRSLMKRFQDLARRILGRKPSPPPADPYAYRMAPVRRGPRGRSGAAVAEIEDDSHRSFPPRRQ*
Ga0116220_103705802	3300009525	Peatlands Soil	MRDGQQKRSLVRRIEDAIRRLLGREPSPPPDPYAYAMAPLRRGPKGRSGAAVAEIEDDSYRSFPPRR*
Ga0116105_10015122	3300009624	Peatland	MRDDKQRRSLMKYLQDAIRRLLGRKPSPPPSDPYAYAMAPLRRGPKGRSGAAVAEIDWSSNEDASYRSFPPRG*
Ga0116105_10378791	3300009624	Peatland	MVEGEGKKSLMKRFQDLARRMLGRGPSPPPGGDPYAYRMAPVRRGPKGRSGAAVAESEDDSHRSFPPRQPSE
Ga0116125_10012776	3300009628	Peatland	MRDDKQRRSLMKYLQDAIRRLLGRKPSPPPSDPYAYAMAPLRRGPKGRSSAAVAEIDWSSNEDDSYRSFPPRG*
Ga0116135_12774822	3300009665	Peatland	MVEGEGKKSLMKRFQDLARRMLGRGPSPPPGGDPYAYRMAPVRRGPKGRSGAAVAEIEDDSHRSFPPRQPSEFIS*
Ga0074044_1000034733	3300010343	Bog Forest Soil	MPDNKRKRSLRKKLEDAICRLLGREPSPPPGDPYAYVTAPLRRGPKGRSGAPVAEIEDDSYRTYPPRRQS*
Ga0137397_108757352	3300012685	Vadose Zone Soil	MKAEGKRTLKERIRDFIRKKFGKEPSPPSGDPYAYVPAILRRGPKGRSGAAVAEIEDDSFEAFPPRHQ*
Ga0181532_100008438	3300014164	Bog	MREGQQKRSLMKRLGDAIRRMLGKEPSPPPTDPYAYSMAPLRHGPKGRGGAAVAEIEDDSYRSFPPRS*
Ga0181534_100258642	3300014168	Bog	MVEGEGKKSLMKRFQDLARRMLGRRPSPPSGGDPYAYRMAPVRRGPKGRSGAAVAEIEDDSYRSFPPRQPSEFIS*
Ga0181534_103394421	3300014168	Bog	MRDDKQRRSLMKYLQDAIRRLLGRKPSPPPSDPYAYAMAPLRRGPKGRSGAAVAEIDWSSNEDDSYRSFPPRG*
Ga0181531_103996042	3300014169	Bog	MMDGENKKSPMKRFKDLALRILGRKPSPPPADPYAYRMAPVRRGPKGRSGAAIAEI
Ga0181531_104397872	3300014169	Bog	MVEGEGKQSLMKRFQDLARRMLGRRPSPPSGGDPYAYRMAPVRRGPKGRSGAAVAEIEDDSYRSFPPRQPSEFIS*
Ga0181537_100113172	3300014201	Bog	MMDGENKKSPMKRFKDLALRILGRKPSPPPADPYAYRMAPVRRGPKGRSGAAIAEIEDDSHRSFPPRRH*
Ga0181516_100350231	3300014655	Bog	MMDGENKKSPMKRFKDLALRILGRKPSPPPADPYAYRMVPVRRGPKGRSGAAIAEIEDDSYRSFPPRRH*
Ga0187879_103688122	3300017946	Peatland	MRDDKQRRSLMKYLQDAIRRLLGRKPSPPPSDPYAYAMAPLRRGPKGRSGAAVAEIDWSSNEDDSYRSFPPRG
Ga0187847_100063334	3300017948	Peatland	MRDDKQRRSLMKYLQDAIRRLLGRKPSPPPSDPYAYAMAPLRRGPKGRSSAAVAEIDWSSNEDDSYRSFPPRG
Ga0187805_100887722	3300018007	Freshwater Sediment	MREKKNDRSLMKKLRDALRRLLRKQPPQPEDPYAYVTAPVGRGPKGRSGAAVAEIEDDSYQSFPPCKS
Ga0187805_101000162	3300018007	Freshwater Sediment	MHDDRDKKGSLVQKLKDSIRRLLGGKPPSQPGDPYAYSMAPLRRGPRGRSGAAVAEIEEDSYQSFPPRR
Ga0187863_100157344	3300018034	Peatland	MVEGEGKKSLMKRFQDLARRMLGRGPSPPPGGDPYAYRMAPVRRGPKGRSGAAVAESEDDSHRSFPPRQPSEFIS
Ga0187855_100155682	3300018038	Peatland	MRDDKQRRSLMKYLQDAIRRLLGRKPSPPPSDPYAYAMAPLRRGPKGRSGAAVAEIDWSSNEDASYRSFPPRG
Ga0187855_107588092	3300018038	Peatland	MVEGEGKKSLMKRFQDLARRMLGRGPSPPPGGDPYAYRMAPVRRGPKGRSGAAVAEIEDDSHRSFPPRQPSEFIS
Ga0181506_12137802	3300019260	Peatland	MDGENKKSPMKRFKDLALRILGRKPSPPPADPYAYRMAPVRRVPKGRSGAAIAEIEDDSHRSFPPRRH
Ga0210403_100667202	3300020580	Soil	MRDGQEKRSLVKRLQDSIRRLLGRGPSPPPGGDPYAYRMAPVRRGPKGRSGAAVAEIEEDSYRAFPPRQP
Ga0210399_103948312	3300020581	Soil	MRNVGPKRSLMKKLQDSIRLLLGREPSPPPADGDPYAYRMAPVRRGPKGRSGAAVAELEDESYQAFPPRSGR
Ga0210395_10000007100	3300020582	Soil	MRDDKQKRSLMKKLGDAIRRLLGLKPSPPPADPYAYSMAPLRRGPKGRSGAAVAEIEQSDHEDDSYRSFPPRR
Ga0210388_100934692	3300021181	Soil	MVDGENKKSLMKRFQDLARRILGRKPSPPPADPYAYRMAPVRRGPKGRSGAAVAEIEDDSHRSFPPHRQ
Ga0210383_1000078619	3300021407	Soil	VRDGQEKKSLVKRLQDAIRRLLGREPSPPPGGDPYAYRMAPVRRGPKGRSGAAVAEIEEDSYQAFPPRQP
Ga0210383_117655352	3300021407	Soil	MVDGENKKSLMKRFQDLARRILGRKPSPPPADPYAYRMAPVRRGPKGRSGAAVAEIEDD
Ga0210391_105466241	3300021433	Soil	MDGENKRSLMKRFQDLARRILGRKPSPPPADPYAYRMAPVRRGPRGRSGAAVAEIED
Ga0210390_110702511	3300021474	Soil	MRDERQRRSLVKRLEDALRRLLGKKPSPPPADPYAYSMAPLRRGPKGRSGAAVADVEDDSYRSFPPRT
Ga0210390_111526081	3300021474	Soil	MRDDKQKRSLMKKLGDAIRRLLGLKPSPPPADPYAYSMAPVRRGPKGRSGAAVAEIEQSDHEDDSYRSFPPRR
Ga0210390_114322781	3300021474	Soil	MRDGQQKRSLVRRIEDAIRRLLGREPSPPPDPYAYAMAPLRRGPKGRSGAAVAEIEDDSYRSFSPRR
Ga0210398_110950492	3300021477	Soil	MMDGENKKSPMKRFMDLARRILGRKPSPPPADPYAYRMAPVRRGPKGRSGAAIAEIEDDSQRSFPPRRQ
Ga0213853_105296071	3300021861	Watersheds	MTDANKTSRMKALIDSIRRFLRREPTPPPGDRYAYVPAPLRRGPKGRSGAAVAEIEDDSYRSFPPRRT
Ga0224556_10021006	3300024295	Soil	MRDDKQRRSLMKYLQDAIRRLLGRKPSPPPSDPYAYAMAPLRRGPKGSSGAAVAEIDWSSNEDDSYRSFPPRG
Ga0209839_100562922	3300026294	Soil	MRDGQQKRSLMKRLEDSIRRLLGRKPSPPPGDPYAYAMAPVRRGPKGRSGAAVAEIEEDGYRSYPPRRS
Ga0208239_10065171	3300027168	Forest Soil	SLMKKLGDAIRRLLGLKPSPPPADPYAYSMAPVRRGPKGRSGAAVAEIEQSDHEDDSYRSFPPRR
Ga0209222_10156071	3300027559	Forest Soil	MDGENKKSLMKRFQDLARRILGRKPSPPPADPYAYRMAPVRRGPKGRSGAAVAEIEDDSHRSFPPRRQ
Ga0209116_11511502	3300027590	Forest Soil	MREEQQKRPLLKRLQEAIRRLLGKKPSPSSPPPGDPYAYVMAPVRRGPKGRSGAAVAEIEEDSYRSFPPRRS
Ga0209274_1000033118	3300027853	Soil	MPTDRQRRSLLKKFGDAIRRLLGRKPSPPPADPYAYAMAPVRRGPKGRSGAAVAEIERSSNDDSYRSFPPRG
Ga0209274_102705561	3300027853	Soil	MDGENKKSPMKRFMDLARRILGRKPSPPPADPYAYRMAPVRRGPKGRSG
Ga0209693_100138502	3300027855	Soil	MMDGENKKSPMKRFMDLARRILGRKPSPPPADPYAYRMAPVRRGPKGRSGAAVAEIEDDSHRSFPPHRQ
Ga0209167_100483012	3300027867	Surface Soil	MGDGGQKRSLMKKLRDGIRRLLGREPSPPPADPYAYRMAPLRRGPKGRSGAAVAEIEDDSFESFPPRS
Ga0209167_105556292	3300027867	Surface Soil	MPDQSKDRSLIKRLRDGILRLLRRKSPPEGDPYAYAMAPLRRGPRGRSGAAVAEIEDDSSRTFPPRRQ
Ga0209169_101561342	3300027879	Soil	MREGQQKRSLMKRLQEAIRRLLGKEPSPPPTDPYAYTMAPVRRGPKGRSGAAVAEIEEDSYQAFPPRRS
Ga0209169_104473191	3300027879	Soil	MVDGENKKSLMKRFQDLARRILGRKPSPPPAAPYAYRMAPVRRGPKGRSGAAVAEIEDDSHRSFPPHRQ
Ga0209380_101040403	3300027889	Soil	MDGENKKSPMKRFMDLARRILGRKPSPPPADPYAYRMAPVRRGPKGRSGAAIAEIEDDSQRSFPPRRQ
Ga0209067_100062033	3300027898	Watersheds	MQNRNDRSLLKKIKDAIRRLLGKRPPQPGDPYAYVMAPVDRGPKSRSGAAVAEIEDDDYRSFPPRQS
Ga0209067_101868082	3300027898	Watersheds	MKKLGDAIRRLLGKEPSPPADPYAYSMAPLRRGPKGRSGAALAEVEDDSFQSFPPRRQ
Ga0209006_100140102	3300027908	Forest Soil	MFMRNADRNPSSLKRIRDAIRRFLGWRPPSQPGDPYAYAMAPLRRGPKGRSGAAVAKIEKDSYRSFPPRRR
Ga0209006_100223965	3300027908	Forest Soil	MMDGENKKSLMKRFKDLARRILGRKPSPPPADPYAYSMAPLRRGPRGRSGAAVAEIEDDSYRSFPPRRQ
Ga0209006_100319574	3300027908	Forest Soil	MRDNRQARSVMQKLKAAIRRLLGWKPSPPPVDPYAYVPAPLRRGPKGRSGAAVAEIEDDSSRTFSPRRHA
Ga0209006_102777831	3300027908	Forest Soil	MPDAERKPSTLKRIKEAIRRLLGRKPPSQPGDPYSYAMAPLRRGPKGRSGAAVAEIEEDSYRSFPPRRK
Ga0209698_100268024	3300027911	Watersheds	MADVERRGLITKIRDAIRRLLGREATPPGDPYAYVTAPIRRGPKGRSGAAVAEIEDDSVRSFPPRR
Ga0209698_103129862	3300027911	Watersheds	VHDRQQKPSLMKKLGDAIRRLLGKEPSPPADPYAYSMAPLRRGPKGRSGAALAEVEDDSFQSFPPRRQ
Ga0265354_10155231	3300028016	Rhizosphere	MRDEKPRRSLMKQLEDALRRLLGKKPSPPPADPYAYSMAPLRRGPKGRSGAAVAEIEDDSYRSFPPRT
Ga0265355_10107592	3300028036	Rhizosphere	MDGENKKSLMKRFKDLARRILGRKPSPPPADPYAYSMAPLRRGPRGRSGAAVAEIEDDSYRSFPPRRQ
Ga0302224_104096322	3300028759	Palsa	VRDGQEKKSLVKRLQDSIRRLLGREPSPPPGGDPYAYRMAPVRRGPKGRSGAAVAEIEDDSYQTFPPRQP
Ga0302227_102119952	3300028795	Palsa	VRDGQGKKSLVKRLQDSIRRLLGREPSPPPGGDPYAYRMAPVRRGPKGRSGAAVAEIEDDSYQTFPPRQR
Ga0308309_110282121	3300028906	Soil	MVDGENKKSLMKRFQDLARRILGRKPSPPPADPYAYRMAPVRRGPKGRSGAAVAEIEDDSHRSFPPRRQ
Ga0311368_104982971	3300029882	Palsa	RDGQGKKSLVKRLQDSIRRLLGREPSPPPGGDPYAYRMAPVRRGPKGRSGAAVAEIEDDSYQTFPPRQR
Ga0311371_102181962	3300029951	Palsa	VRDGQEKKSLVKRLQDSIRRLLGREPSPPPGGDPYAYRMAPVRRGPKGRSGAAVAEIEDDSYQTFPPRQR
Ga0302304_101647961	3300029993	Palsa	AGRKRSTLETIQDAIRRLLGKKPPQPGDPYAYVTAPVRRGPKGRSGAAVAEIEDDSYRSFPPRRM
Ga0302177_100208653	3300030053	Palsa	MRDEKQRRSLIKQLEDALRRLLRKKPSPPPADPYAYSMAPLRRGPKGRSGAAVAEIEDDSYRSFPPRT
Ga0302177_103112572	3300030053	Palsa	SQCSNRSVRLGGTVRDGQEKKSLVKRLQDSIRRLLGREPSPPPGGDPYAYRMAPVRRGPKGRSGAAVAEIEDDSYQTFPPRQP
Ga0302176_103290111	3300030057	Palsa	GHMRDEKQRRSLIKQLEDALRRLLRKKPSPPPADPYAYSMAPLRRGPKGRSGAAVAEIEDDSYRSFPPRT
Ga0311370_100773355	3300030503	Palsa	VRDGQGKKSLVKRLQDSIRRLLGREPSPPPGGDPYAYRMAPVRRGPKGRSGAAVAEIEDDSYQ
Ga0265762_10041972	3300030760	Soil	MDGENKKSLMKRFQDLARRILGRKPSPPPADPYAYRMAPVRRGPKGRSGAAVAEIEDDSHRSFPPHRQ
Ga0265762_11888271	3300030760	Soil	MRDEKQRRSLMKKLEDALRRLLGKKPSPPPDPYAYSMAPLRRGPKGRSGAAVADIEDDSYCSFPPRT
Ga0265770_10630611	3300030878	Soil	MRDEKPRRSLMKQLEDALRRLLGKKPSPPPDPYAYSMAPLRRGPKGRSGAAVADIEDDSYCSFPPRT
Ga0310686_1186858733	3300031708	Soil	MRHNHPKGSLMKRLQDSIRRLLSREPSPPPTDPYAYTMAPLRRGPKGRSGAAVAEIEDDGDLSFPPRS
Ga0307475_102723452	3300031754	Hardwood Forest Soil	MLDADKKPSRIKALIDSIRRLLRREPTPPPGDPYAYVTAPLLRGPKGRSGAAVAEIEDDSYQAFPPRHQI
Ga0311301_105375572	3300032160	Peatlands Soil	MRDGQQKRSLVRRIEDAIRRLLGREPSPPPDPYAYAMAPLRRGPKGRSGAAVAEIEDDSYRSFPPRR
Ga0335074_101055433	3300032895	Soil	MRDDRKKRSLMKKVGDAIRRLLSRKPPTAPEDPYAYVMAPVRRGPKGRSGAAVAEIEDDSFRSFPPRR
Ga0326728_101884792	3300033402	Peat Soil	MPDDEKRSLMKTLRDSIRRLLGGKPSPPPGDPYAYVTASLHRGPKGRSGAAVAEPEDNSYQSFPPRRS
Ga0334850_003544_364_576	3300033828	Soil	MRDGQGKKSLVKRLQDSIRRLLGREPSPPPGGDPYAYRMAPVRRGPKGRSGAAVAEIEDDSYQTFPPRQR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101524

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences