NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F101470

Metagenome Family F101470

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F101470
Family Type Metagenome
Number of Sequences 102
Average Sequence Length 39 residues
Representative Sequence DILAFEVSDEALEAAAGSEQVNYTLGACTGLSVCPG
Number of Associated Samples 90
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 23.76 %
% of genes near scaffold ends (potentially truncated) 80.39 %
% of genes from short scaffolds (< 2000 bps) 76.47 %
Associated GOLD sequencing projects 87
AlphaFold2 3D model prediction Yes
3D model pTM-score0.24

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (62.745 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil
(11.765 % of family members)
Environment Ontology (ENVO) Unclassified
(17.647 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(45.098 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54
1FACENCE_1065030
2SwRhRL2b_0537.00001480
3ARcpr5yngRDRAFT_0031413
4NODE_07185186
5Ga0055435_101760221
6Ga0055500_101391332
7Ga0063356_1032351791
8Ga0063356_1056680171
9Ga0068869_1006516981
10Ga0070707_1020848681
11Ga0070741_1000199540
12Ga0070664_1008654131
13Ga0070740_102986161
14Ga0068864_1006879842
15Ga0066905_1000641552
16Ga0075028_1007502431
17Ga0075422_100011338
18Ga0075422_100736841
19Ga0079222_100249875
20Ga0075425_1016469461
21Ga0105245_100158374
22Ga0111538_103464281
23Ga0105241_109048292
24Ga0126380_100544231
25Ga0126380_109184211
26Ga0126370_100979844
27Ga0126370_101309911
28Ga0126370_113292621
29Ga0126370_115924612
30Ga0126376_101591124
31Ga0126378_115609502
32Ga0134125_102359572
33Ga0134125_113885441
34Ga0134128_128353771
35Ga0126381_1011533941
36Ga0126381_1017807863
37Ga0126381_1045122843
38Ga0134126_115736181
39Ga0157321_10154381
40Ga0157351_10158012
41Ga0157295_101163371
42Ga0157286_100441402
43Ga0157298_100041891
44Ga0153915_104735361
45Ga0164298_114590011
46Ga0126369_100755964
47Ga0157373_101065581
48Ga0137409_115242231
49Ga0132258_132231611
50Ga0132256_1011704242
51Ga0132255_1003470853
52Ga0132255_1030073542
53Ga0187824_101115751
54Ga0187786_101265442
55Ga0187786_103196912
56Ga0187779_100053601
57Ga0187778_100351304
58Ga0187765_100386681
59Ga0173481_100001194
60Ga0182009_103400071
61Ga0247747_10010342
62Ga0247786_11331561
63Ga0247791_10465831
64Ga0207656_105641861
65Ga0210132_10046411
66Ga0210139_10773711
67Ga0209584_103220872
68Ga0207710_100631343
69Ga0207711_103851061
70Ga0207658_100361664
71Ga0207639_105097381
72Ga0207698_106854823
73Ga0209840_10752572
74Ga0207510_1027472
75Ga0207582_10065841
76Ga0207609_1040551
77Ga0209982_10549842
78Ga0207981_10228351
79Ga0209581_10152692
80Ga0209465_102353851
81Ga0209067_103295482
82Ga0207428_109282462
83Ga0307317_101551551
84Ga0307282_104697892
85Ga0307304_106243812
86Ga0255311_10007362
87Ga0307498_100182951
88Ga0315550_10214221
89Ga0306918_110354232
90Ga0318551_102487252
91Ga0310891_100065581
92Ga0308175_1018297252
93Ga0310897_100649561
94Ga0310906_109199161
95Ga0310890_101521051
96Ga0307470_105544281
97Ga0307472_1000751381
98Ga0307472_1004364452
99Ga0326726_111594392
100Ga0326730_10525091
101Ga0247830_116612752
102Ga0326723_0235711_697_813
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 10.94%    β-sheet: 0.00%    Coil/Unstructured: 89.06%
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5101520253035DILAFEVSDEALEAAAGSEQVNYTLGACTGLSVCPGSequenceα-helicesβ-strandsCoilSS Conf. scoreSignal Peptide
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.24
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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Visualization
All Organisms
Unclassified
62.7%37.3%
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Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Freshwater Wetlands
Freshwater Sediment
Salt Marsh Sediment
Natural And Restored Wetlands
Watersheds
Soil
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Surface Soil
Unplanted Soil
Soil
Soil
Agricultural Soil
Arctic Peat Soil
Soil
Soil
Hardwood Forest Soil
Soil
Tropical Peatland
Soil
Tropical Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Sandy Soil
Peat Soil
Arabidopsis Rhizosphere
Switchgrass Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Arabidopsis Thaliana Rhizosphere
Miscanthus Rhizosphere
Arabidopsis Rhizosphere
Populus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Corn Rhizosphere
Arabidopsis Rhizosphere
Sugar Cane Bagasse Incubating Bioreactor
3.9%8.8%2.9%3.9%11.8%2.9%2.9%2.9%2.9%5.9%4.9%2.9%3.9%2.9%2.9%4.9%
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
FACENCE_10650302040502001SoilEDLLTYEVSDEALETVGGKEIAGNYTLGACTGLSVCDG
SwRhRL2b_0537.000014802162886007Switchgrass RhizosphereDILAFEVSDEALEAAAGSEQVNYTLGACTGLSVCPG
ARcpr5yngRDRAFT_00314133300000043Arabidopsis RhizosphereMTKQEDVLAFEVSDEALEAAAGSEQVNYTLGACTGLSVCPG*
NODE_071851863300000156Sugar Cane Bagasse Incubating BioreactorMTNQEDILAFEVSDEALEAAAGSEQVNYTLGACTGLSVCPG*
Ga0055435_1017602213300003994Natural And Restored WetlandsMTTQEDILAFEVSDEALEAAAGSEQVNYTLGACTGLSVCPG*
Ga0055500_1013913323300004062Natural And Restored WetlandsDGEVLAFEVSDAALEIAAASAKEKANFTLGACSGLSVCPG*
Ga0063356_10323517913300004463Arabidopsis Thaliana RhizosphereMTNEEDILAFEVSDEALEAAAGSEQVNYTLGACTGLSVCPG*
Ga0063356_10566801713300004463Arabidopsis Thaliana RhizosphereMTNEEDILAFEVSDEALEAAAGSEQVNYTLGACTGLSVCP
Ga0068869_10065169813300005334Miscanthus RhizosphereMTNEEDIPAFEVSDEALEAAAGSEQVNYTLGACTGLSVCP
Ga0070707_10208486813300005468Corn, Switchgrass And Miscanthus RhizosphereMTNQEDVLAFEVSDEALEAAAGSEQVNYTLGACTGLSVCPG*
Ga0070741_10001995403300005529Surface SoilMKTMFEQIEEEILAFDVSDDALEVAAGGKEQASYTLGACTGLSVCPG*
Ga0070664_10086541313300005564Corn RhizosphereQEDVLAFEVSDEALEAAAGSEQVNYTLGACTGLSVCPG*
Ga0070740_1029861613300005607Surface SoilMNETMIAEQEILSFEVSDEALEVTAGSEKEYASYTLGACTGLSVCPQ*
Ga0068864_10068798423300005618Switchgrass RhizosphereLAIEVADVALEIAAGTAKEKANFTLGACTGLSECPG*
Ga0066905_10006415523300005713Tropical Forest SoilMQILGFEVSDEALESAGDSAKKANFTLGACTGLSVCDG*
Ga0075028_10075024313300006050WatershedsNVTFEVTDEALELAAGAAKEKANFTLGACTGLSVCDG*
Ga0075422_1000113383300006196Populus RhizosphereVTMTKQEDVLAFEVSDEALEAAAGSEQVNYTLGACTGLSVCPG*
Ga0075422_1007368413300006196Populus RhizosphereHREELVIDTVSDGAEIAAGAAKEQANFTLCTCSGLSVCPG*
Ga0079222_1002498753300006755Agricultural SoilNNVSDEALEIAAGSAKEKANFTLGACSGLSVCPG*
Ga0075425_10164694613300006854Populus RhizosphereEILAFEVADVALEIAAGTAGKANFTLGACTGLSECPG*
Ga0105245_1001583743300009098Miscanthus RhizosphereMTKQEDVLAFEVSDEALEAAAGGEQVNYTLGACTGLSVCPG*
Ga0111538_1034642813300009156Populus RhizosphereGIVTMTKQEDVLAFEVSDEALEAAAGSEQVNYTLGACTGLSVCPG*
Ga0105241_1090482923300009174Corn RhizosphereFKVSDEALEIAAGAAQEKANFTLGACTGLSECPG*
Ga0126380_1005442313300010043Tropical Forest SoilETLAFNVSDEVLEIAAGSAKEKANFTLGACTGLSECPG*
Ga0126380_1091842113300010043Tropical Forest SoilAFEVSDEALEIAAGTSKEKANFTLGACSGLSVCPG*
Ga0126370_1009798443300010358Tropical Forest SoilLAFNVSDEVLEIAAGTAKEKANFTLGACTGLSECPG*
Ga0126370_1013099113300010358Tropical Forest SoilEELFINLISDEALEIAAGSTKEKANFTLGACSGLSVCPG*
Ga0126370_1132926213300010358Tropical Forest SoilKEILAFEVSDEALEIAAGMAKEKAGFTLGACTGLSVCDG*
Ga0126370_1159246123300010358Tropical Forest SoilLIYEVSDEALEIAAGTTREPVNFTLGSCTGLSECPG*
Ga0126376_1015911243300010359Tropical Forest SoilGFEVSDEALESAGDSAKKANFTLGACTGLSVCDG*
Ga0126378_1156095023300010361Tropical Forest SoilDFEIADEALEIASGVANAPANFTLGACTGLSECPG*
Ga0134125_1023595723300010371Terrestrial SoilLPNKEEILAFEVSDEALEAAAGNEQVNYTLGACSGLSVCPG*
Ga0134125_1138854413300010371Terrestrial SoilEVLAFDVSDEALENAAGSETQAFTLGACSGLSVCPG*
Ga0134128_1283537713300010373Terrestrial SoilLAFEVSDEALEAAAGSEQVNYTLGACTGLSVCPG*
Ga0126381_10115339413300010376Tropical Forest SoilKEILAFEVSDEALEIAAGMAKEKAGFTLGACTGLSVCEG*
Ga0126381_10178078633300010376Tropical Forest SoilEDEILAFEISDAALETAAGVAKDKANFTLGACTGLSECPG*
Ga0126381_10451228433300010376Tropical Forest SoilLGFEVSDAALESAAGNAKGKANFTLGACTGLSVCGG*
Ga0134126_1157361813300010396Terrestrial SoilMTNEEDILAFEVSDEALEAAAGNEQVNYTLGACSGLSVCPG*
Ga0157321_101543813300012487Arabidopsis RhizosphereEELFINNVSDEALEIAAGSAKEKANFTLGACSGLSVCPG*
Ga0157351_101580123300012501Unplanted SoilYAMTNEEDILAFEVSDEALEAAAGSEQVNYTLGACTGLSVCPG*
Ga0157295_1011633713300012906SoilIFAFEVSDEALEIAAGTENEKASYTLGACSGLSVCPG*
Ga0157286_1004414023300012908SoilTKQEDVLAFEVSDEALEAAAGSEQVNYTLGACTGLSVCPG*
Ga0157298_1000418913300012913SoilILNFNVSDEALESAGDNAVAANYTLGACTGLSVCPG*
Ga0153915_1047353613300012931Freshwater WetlandsMQNTATNLEKAEQLVVAFDVSDEALEMAAGAAKEKANFTLGACSGL
Ga0164298_1145900113300012955SoilDIFAFEVSDEALEIAAGTENEKASYTLGACSGLSVCPG*
Ga0126369_1007559643300012971Tropical Forest SoilAFEVSDEALEIAAGMAKEKAGFTLGACTGLSVCDG*
Ga0157373_1010655813300013100Corn RhizosphereRNYAMTNQEDILAFEVSDEALEAAAGSEQVNYTLGACTGLSVCPG*
Ga0137409_1152422313300015245Vadose Zone SoilAFEVSDEALESAAGTAKEKANFTLGACSGLSVCGG*
Ga0132258_1322316113300015371Arabidopsis RhizosphereQEILAFEVADVALEIAAGTAKGKANFTLGACTGLSECPG*
Ga0132256_10117042423300015372Arabidopsis RhizosphereSGISDEALEIAAGTAKEKANFTLGACSGLSVCPG*
Ga0132255_10034708533300015374Arabidopsis RhizosphereDGILNFNVSDEALESAGDNAVAANYTLGACTGLSVCPG*
Ga0132255_10300735423300015374Arabidopsis RhizosphereIVTMTKQEDVLAFEVSDEALEAAAGSEQVNYTLGACTGLSVCPG*
Ga0187824_1011157513300017927Freshwater SedimentLAFDVSDEALEMAAGSAKEKANFTLGACTGLSVCDG
Ga0187786_1012654423300017944Tropical PeatlandEILAFEVSDEALESAAGSEKANFTLGACTGLSVCDG
Ga0187786_1031969123300017944Tropical PeatlandLISGSSDAALEIAAGIAKEKASFTLGACTGLSVCDG
Ga0187779_1000536013300017959Tropical PeatlandILAFEVADEALEIAGGKEKAGSFTLGACTGLSVCDG
Ga0187778_1003513043300017961Tropical PeatlandEILAFEVSDEALEIAAGSEKANFTLGACTGLSVCDG
Ga0187765_1003866813300018060Tropical PeatlandEIFGSEVSDAALESAAGTAKDKANFTLGACTGLSVCGG
Ga0173481_1000011943300019356SoilMTKQEDVLAFEVSDEALEAAAGSEQVNYTLGACTGLSVCPG
Ga0182009_1034000713300021445SoilMTNQEDILAFEVSDEALEAAAGSEQVNYTLGACTGLSVCPG
Ga0247747_100103423300022737SoilMTNEEDILAFEVSDEALEAAAGSEQVNYTLGACTGLSVCPG
Ga0247786_113315613300022883SoilDIFAFEVSDEALEIAAGTENEKASYTLGACSGLSVCPG
Ga0247791_104658313300023062SoilMTKQEDVLAFEVSDEALEAAAGGEQVNYTLGACTGLSVCPG
Ga0207656_1056418613300025321Corn RhizosphereKGIVTMTKQEDVLAFEVSDEALEAAAGSEQVNYTLGACTGLSVCPG
Ga0210132_100464113300025538Natural And Restored WetlandsTQEDILAFEVSDEALEAAAGSEQVNYTLGACTGLSVCPG
Ga0210139_107737113300025558Natural And Restored WetlandsMTTQEDILAFEVSDEALEAAAGSEQVNYTLGACTGLSVCPG
Ga0209584_1032208723300025878Arctic Peat SoilFEASDEALEAAAGTGREMAANYTLAACSGLSVCPA
Ga0207710_1006313433300025900Switchgrass RhizosphereMTNQEDVLAFEVSDEALEAAAGSEQVNYTLGACTGLSVCPG
Ga0207711_1038510613300025941Switchgrass RhizosphereMTNQEDVLAFEVSDEALEAAAGSEQVNYTLGACTG
Ga0207658_1003616643300025986Switchgrass RhizosphereAMTNEEDILAFEVSDEALEAAAGSEQVNYTLGACTGLSVCPG
Ga0207639_1050973813300026041Corn RhizosphereEQEMLAFEVADEVLEIASGTAKERANFTLGACTGLSECPG
Ga0207698_1068548233300026142Corn RhizosphereNILTFNVSDEALESAGDNAVAANYTLGACTGLSVCPG
Ga0209840_107525723300026223SoilTLTFEVTDETLEAAAGTVKEKAANYTLAACSGLSVCPA
Ga0207510_10274723300026741SoilEEDILAFEVSDEALEAAAGSEQVNYTLGACTGLSVCPG
Ga0207582_100658413300026960SoilTKQEDVLAFEVSDEALEAAAGSEQVNYTLGACTGLSVCPG
Ga0207609_10405513300027403SoilKQEDVLAFEVSDEALEAAAGSEQVNYTLGACTGLSVCPG
Ga0209982_105498423300027552Arabidopsis Thaliana RhizosphereMTNEEDILAFEVSDEALEAAAGSEQVNYTLGACTGLSVC
Ga0207981_102283513300027560SoilGILNFNVSDEALESAGDNAVAANYTLGACTGLSVCPG
Ga0209581_101526923300027706Surface SoilMKTMFEQIEEEILAFDVSDDALEVAAGGKEQASYTLGACTGLSVCPG
Ga0209465_1023538513300027874Tropical Forest SoilFINLVSDEALEIAAGSTKEKANFTLGACSGLSVCPG
Ga0209067_1032954823300027898WatershedsILAYDVSDEALEIAAGGKEKAGSYTLGACTGLSVCPG
Ga0207428_1092824623300027907Populus RhizosphereTMTKQEDVLAFEVSDEALEAAAGSEQVNYTLGACTGLSVCPG
Ga0307317_1015515513300028720SoilEILAFEVSDEALEIAAGMAKEKAGFTLGACTGLSVCDG
Ga0307282_1046978923300028784SoilDELFIKLVSDEALEIAAGSVKEKANFTLGACSGLSVCPG
Ga0307304_1062438123300028885SoilAFEVSDEALEIAAGMAKEKAGFTLGACTGLSVCDG
(restricted) Ga0255311_100073623300031150Sandy SoilMTNEEDILAFEVSDEALEAAAGSEQLNYTLGACTGLSVCPG
Ga0307498_1001829513300031170SoilAFEVSDEALEIAAGSTKEKANFTLGACSGLSVCPG
Ga0315550_102142213300031653Salt Marsh SedimentFEVSDEALEAAACMMEDKAANYTLGACSGLSVCPGW
Ga0306918_1103542323300031744SoilLSFDVSDEALEISAGLGKENANFTLGACTGLSECPA
Ga0318551_1024872523300031896SoilLAFEVSDEALEIAAGMAKEKAGFTLGACTGLSVCEG
Ga0310891_1000655813300031913SoilILAFEVSDEALEIAAGMAKEKAGFTLGACTGLSVCDG
Ga0308175_10182972523300031938SoilVMLEKAEEAVLAFEVSDEALEMAAGGALEKANFTLGACSGLSVCDG
Ga0310897_1006495613300032003SoilDSILNFNVSDEALESAGDNAVAANYTLGACTGLSVCPG
Ga0310906_1091991613300032013SoilLAFEVADVALEIAAGTAKGKANFTLGACTGLSECPG
Ga0310890_1015210513300032075SoilMTNEEDILAFEVSDEALEAAAGSEQVNYTLGACTGLSV
Ga0307470_1055442813300032174Hardwood Forest SoilSILNFNVSDEALESAGDNAVAANYTLGACTGLSVCPG
Ga0307472_10007513813300032205Hardwood Forest SoilEEELFINNVSDEALEIAAGSAKEKANFTLGACSGLSVCPG
Ga0307472_10043644523300032205Hardwood Forest SoilEDLFVFEISDDALEAAAGTRNEKAMNFTLGACSGLSECPG
Ga0326726_1115943923300033433Peat SoilDLLIFEISDDVLETAAGTRNEKAVNFTLGACSGLSVCPG
Ga0326730_105250913300033500Peat SoilILVFKVSDEALEIAAGSAKDKANFTLGACTGLSECPG
Ga0247830_1166127523300033551SoilIFAFEVSDEALEIAAGTENEKASYTLGACSGLSVCPG
Ga0326723_0235711_697_8133300034090Peat SoilEVLAFEVSDAALEIAAASAKEKANFTLGACSGLSVCPG


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