NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F101336

Metagenome / Metatranscriptome Family F101336

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F101336
Family Type Metagenome / Metatranscriptome
Number of Sequences 102
Average Sequence Length 40 residues
Representative Sequence PTKIALVGEPSLTSVDPFVSKGTAKTSFCGNSWQATY
Number of Associated Samples 67
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 100.00 %
% of genes from short scaffolds (< 2000 bps) 90.20 %
Associated GOLD sequencing projects 65
AlphaFold2 3D model prediction Yes
3D model pTM-score0.22

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (67.647 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine
(29.412 % of family members)
Environment Ontology (ENVO) Unclassified
(82.353 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(80.392 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.
1LPfeb10P162000mDRAFT_10063031
2LPaug08P121000mDRAFT_10419852
3KiloMoana_101061051
4supr60_10388142
5Ga0066846_102481432
6Ga0066832_101998601
7Ga0066853_102502122
8Ga0066380_100658382
9Ga0066379_102039571
10Ga0066373_101721611
11Ga0081592_10918061
12Ga0068469_11922351
13Ga0068470_14684791
14Ga0068479_12978101
15Ga0068471_11509461
16Ga0068471_14369471
17Ga0068472_102446311
18Ga0068472_103401031
19Ga0068472_103407321
20Ga0068472_103479466
21Ga0068472_104097261
22Ga0068472_104257071
23Ga0068472_104782751
24Ga0068472_105711402
25Ga0068472_106874171
26Ga0068472_107354141
27Ga0068472_107407801
28Ga0068472_107614882
29Ga0068472_107859732
30Ga0068472_111293111
31Ga0068487_13941381
32Ga0068477_11491962
33Ga0068477_14937562
34Ga0068483_12991271
35Ga0068488_11552171
36Ga0068488_15893991
37Ga0068488_16513221
38Ga0068488_17122823
39Ga0068502_13434691
40Ga0068481_13250573
41Ga0068481_13285683
42Ga0068503_106682032
43Ga0068493_102861221
44Ga0068493_103177391
45Ga0068493_104794331
46Ga0068493_105139162
47Ga0068493_105582012
48Ga0068493_105644161
49Ga0068493_107473812
50Ga0099958_11780232
51Ga0066372_104784441
52Ga0066366_102764111
53Ga0066366_103894941
54Ga0105020_10221971
55Ga0105020_11145741
56Ga0105020_11162723
57Ga0105348_10971042
58Ga0105349_102659321
59Ga0117902_14214871
60Ga0114996_105109921
61Ga0114932_109086802
62Ga0114933_102107871
63Ga0114933_107058752
64Ga0114933_109883342
65Ga0115002_107841481
66Ga0114999_104446822
67Ga0133547_102739801
68Ga0163108_110941351
69Ga0193025_10114741
70Ga0211709_101731441
71Ga0211549_101612401
72Ga0211549_102079941
73Ga0211548_102042642
74Ga0211514_101334651
75Ga0211715_100084739
76Ga0211585_102075231
77Ga0211503_101623111
78Ga0211503_103132331
79Ga0211503_106803621
80Ga0206686_11698451
81Ga0206685_102802012
82Ga0232637_104813731
83Ga0208832_1010246
84Ga0208206_10396602
85Ga0208747_10231101
86Ga0208764_104301381
87Ga0209034_101730101
88Ga0209501_100397206
89Ga0209501_103488321
90Ga0257109_10336351
91Ga0315328_103260022
92Ga0310121_101424851
93Ga0310123_101447391
94Ga0310120_101805643
95Ga0310125_101281083
96Ga0315318_103430531
97Ga0310344_104630411
98Ga0315324_101064802
99Ga0315333_100638243
100Ga0315336_11049431
101Ga0315334_103141381
102Ga0315334_117273842
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 0.00%    β-sheet: 15.38%    Coil/Unstructured: 84.62%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

5101520253035PTKIALVGEPSLTSVDPFVSKGTAKTSFCGNSWQATYSequenceα-helicesβ-strandsCoilSS Conf. scoreSignal Peptide
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer

WebGL does not seem to be available.

This can be caused by an outdated browser, graphics card driver issue, or bad weather. Sometimes, just restarting the browser helps. Also, make sure hardware acceleration is enabled in your browser.

For a list of supported browsers, refer to http://caniuse.com/#feat=webgl.

Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.22
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
32.4%67.6%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Marine
Deep Ocean
Seawater
Marine
Marine
Seawater
Marine
Marine
Seawater
Marine
Methane Seep Mesocosm
Hydrothermal Vent Fluids
Diffuse Hydrothermal Fluids
Hydrothermal Vent Plume
Black Smokers Hydrothermal Plume
Deep Subsurface
17.6%4.9%10.8%29.4%3.9%8.8%10.8%3.9%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
LPfeb10P162000mDRAFT_100630313300000186MarineNSFIPTKIALVGEPSLTSVDTFVSKGTAKTSFCGNSWQATY*
LPaug08P121000mDRAFT_104198523300000322MarineFIPTKITLVGEPSLTSVDPFVSKGTAKTFFCGNSWQITY*
KiloMoana_1010610513300001680Black Smokers Hydrothermal PlumeTYFIIPTKNALVGEPSLTSVDPFVSKGTAKTFFCGNSWQTTY*
supr60_103881423300001769Hydrothermal Vent PlumeNSFIPTKTALAGEPSLTSVDPFVSKGTAKTSLCGNSTQPTY*
Ga0066846_1024814323300005429MarinePTKITLVGEPSLTSVDPFVSKGTAKTFFCGNTWQTTYRGSKSQ*
Ga0066832_1019986013300005597MarineIALVGEPSLTSVDPFVSKGTAKTFFCGNSWQTTY*
Ga0066853_1025021223300005603MarineITLVGEPSLTSVDPFVSKGTAKTFFCGNSWQATY*
Ga0066380_1006583823300005948MarineFIPTKIALVGEPSLTSVDPFVSKGTAKTFFCGNSRQATY*
Ga0066379_1020395713300005951MarineIFKHNSFIPAKNALVGEPSLTSVDPFVSKGTAKTFFCGNSRQATY*
Ga0066373_1017216113300006011MarineGEPSLTSVDPFVPKGTAKTFFCGNRRQATYRGSKSQQIKIKLKI*
Ga0081592_109180613300006076Diffuse Hydrothermal FluidsAKNALVDEPSLTSVDPFASKGTAKTFFCGNSWQTTY*
Ga0068469_119223513300006306MarineIPTKIALVGEPSLTSVDPFVSKGTAKIFFCGNCWQTTY*
Ga0068470_146847913300006308MarineLSKKIFKHNSFIPTKITLVGEPSLTSVDPFVSKGTAKTSFCGNSQQAIY*
Ga0068479_129781013300006309MarineYIFKHNSFIPTKIALVGEPSLTSVDPFVAKGTAKTLLCGNSPQATY*
Ga0068471_115094613300006310MarinePTKDALVGEPSLTSVDPSVPKGTAKISFCGNSWQTTY*
Ga0068471_143694713300006310MarineIPTNTALVGEPSLTSVDPSVSKGTAKTSLCGNSPQATY*
Ga0068472_1024463113300006313MarineIALVGEPSLTSVDPFVPKGTAKTFFCGNRWQTTYRGSKSQ*
Ga0068472_1034010313300006313MarineEPSLTSVAPFVPKGTAKTFFCGNRWQTTYRGSKSQ*
Ga0068472_1034073213300006313MarinePSTDQIFKHNSFIPTQIALVGEPSLTNVDPFVSKGTAKTSFCVNSWQATY*
Ga0068472_1034794663300006313MarineIPAKHALVGEPSLTCVDPFVSKGTAKTSLCGNSTQATY*
Ga0068472_1040972613300006313MarineHNSFIPTKTALVGEPSLTSVDPFVSKGTAKTSLCGNSTQPTY*
Ga0068472_1042570713300006313MarinePTKIALVGEPSLTSVDPFVSKGTAKTSFCGNSWQATY*
Ga0068472_1047827513300006313MarineTKITLVGEPSLTSVDPFVSKGTAKTSFCGNSPQATY*
Ga0068472_1057114023300006313MarineFKHNSFIPTKIALVGEPSLTSVDPFVSKGTAKTFFCGNSRQATY*
Ga0068472_1068741713300006313MarineIFKHNSFIPAKNALVGEPSLTSVDPFVSKGTAKTFFCGNRWQTTY*
Ga0068472_1073541413300006313MarineNALVGEPSLTSVDPSVSKGTAKTFFCGNSWQTTY*
Ga0068472_1074078013300006313MarineHNILTPTNIALVGEPSLTSVDPFVPKGTAKTFFCGNRRQATYRGSKSQ*
Ga0068472_1076148823300006313MarinePAKNALVGEPSLTSVDPFVSKGTAKTFFCGNSWQTTY*
Ga0068472_1078597323300006313MarineKIALVGEPSLTSVDPFVSKGTAKTFFCGNSWQITY*
Ga0068472_1112931113300006313MarineAKNALVGEPSLTSVDPFVSKGTAKTFFCGNSPQATY*
Ga0068487_139413813300006315MarineFKHNLSIPTTIALVGEPSLTSVDPFVSKGTAKTYFCGNKQQTTY*
Ga0068477_114919623300006326MarineIALVGEPSLTSVDPFVSKGTAKTSFCGNSPQATY*
Ga0068477_149375623300006326MarineNALVGEPSLTSVDPFVSKGTAKTSFCVNSWQTTY*
Ga0068483_129912713300006330MarineNSLVGEPSLTSVDPFASKGTAKTFFCGNSRQATY*
Ga0068488_115521713300006331MarineHNTFIPTKDALVGEPSLTSVDPFVTKGTAKTFFCGNSWQTTY*GSKSQ*
Ga0068488_158939913300006331MarineSFIPTKITLVGEPSLTSVDPFVSKDTAKTFFCGNSWQATY*
Ga0068488_165132213300006331MarineIIPTTIALVGEPSLTSVDPFVSKGTAKTFFCGNSWQITY*
Ga0068488_171228233300006331MarineKIALVGEPSLTSVDPFVSKGTAKTSFCGNSPQATY*
Ga0068502_134346913300006336MarineIPTKNALVGEPSLTSVDPFASKGTAKTSFCGNSWQATY*
Ga0068481_132505733300006339MarineFIPTKIALVGEPSLTSVDPFVSKGTAKTYFCGNSQQTTY*
Ga0068481_132856833300006339MarineTQIALVGEPSLTSVDPFVSKGTAKTTFCGNSQQTTY*
Ga0068503_1066820323300006340MarineAKITLVGEPSLTSVDPFVSKGTAKTSFCGNSPQATY*
Ga0068493_1028612213300006341MarineIIALVGEPSLTSVDPFVSKGTAKTFFCGNSWQATY*
Ga0068493_1031773913300006341MarineTALVGEPSLTSVDPFVSKDTAKTSLCGNNTQATY*
Ga0068493_1047943313300006341MarineQTYFLIPTKIALVGEPSLTSVDPFVSKGTAKTFFCGNSWQITY*
Ga0068493_1051391623300006341MarineKHNSFIPTKIALVGEHSLTSVDPFVSKGTAKTSFCGNSPQATY*
Ga0068493_1055820123300006341MarineNALVGEPSLTSVDPFVSKGTAKTSLCGNSTQPTY*
Ga0068493_1056441613300006341MarineNALVGEPSLTSVDPFVSKGTAKTFFCGNSQQATY*
Ga0068493_1074738123300006341MarineKNALVDEPSLTSVDPFVSKGTAKTFFCGNSWQTTY*
Ga0099958_117802323300006567MarinePAKNALVGEPSLTSVDLFVSKDTAKTSFCGNSWQTTY*
Ga0066372_1047844413300006902MarineIFKHNSFIPTKIALVGEPSLTSVDPFVSKGTAKTSFCGNSWQTTY*
Ga0066366_1027641113300007283MarineALVGEPSLTSVDPFVSKGTAKTFFCGNRWQTIYRGSKSQ*
Ga0066366_1038949413300007283MarineIPTKIALVGEPSLTSVDPFVSKGTAKTFFCGNRQQTTY*
Ga0105020_102219713300007514MarineIFKHNLFIPTKIALVGEPSLTSVDPFVSKGTAKTFFCGNSWEITY*
Ga0105020_111457413300007514MarineHNSFIPAKNALVGEPSLTSVDPFVSKGTAKTFFCGNSWQTTY*
Ga0105020_111627233300007514MarineHNSFIPAKNALVGEPSLTSVDPFVSKGTAKTFFCGNSWQATY*
Ga0105348_109710423300008223Methane Seep MesocosmHNSFIPTKITLVGEPSLTSVDPFVAKGTAKTFFCGNKWQTTY*
Ga0105349_1026593213300008253Methane Seep MesocosmFKHNSFIPTKIALVGEPSLTSVDPFVSKGTAKTSFCGNSQQTTYRGSKSQ*
Ga0117902_142148713300009104MarineKIALVGEPSLTSVDPFVSKGTAKTYFCGNSQQTTY*
Ga0114996_1051099213300009173MarineKHNSFIPTKIALVGEPSLTSVDPFVAKGTAKTFFCGNSLQITY*
Ga0114932_1090868023300009481Deep SubsurfaceIFPTKIALVGEPSLTSVDPFVSKGTAKTLFCGNTLESTY*
Ga0114933_1021078713300009703Deep SubsurfaceALVGEPSLTSVDPFVSKGTAKTYFCGNNSQTIYRGSKSQQIKIKV*
Ga0114933_1070587523300009703Deep SubsurfaceIPAQIALVGEPSLTSVDPFVSKGTAKTSFCGNRQQTTY*
Ga0114933_1098833423300009703Deep SubsurfaceKHNSFIPAKIALVGEPSLTSVDPFVPKGTAKTSFCGNSWETTY*
Ga0115002_1078414813300009706MarineIPTKIALVGEPSLTSVDPFVSKGTAKTFFCGNNWQTTY*
Ga0114999_1044468223300009786MarineFIPTKIALVGEPSLTSVDPFVAKGTAKTFFCGNSLQITY*
Ga0133547_1027398013300010883MarineIALVGEPSLTSVDPFVSKGTAKAFVCGNWLQITH*
Ga0163108_1109413513300012950SeawaterIALVGEPSLTSVDPFVSKGTAKTFFCGNRWQTTYRGSKSQ*
Ga0193025_101147413300018606MarineIFKHNLFTPTNIALVGEPSLTSVDPFVSKGTAKTSFCGNSPQATY
Ga0211709_1017314413300020369MarineTKIALVGEPSLTSVDPFVSKGTAKTFFCGNSWQITY
Ga0211549_1016124013300020425MarineGEPSLTSVDPFVPKGTAKTFFCGNRWQATYRGSKSQ
Ga0211549_1020799413300020425MarineTKNALVGEPSLTSVDPFVSKGTAKTSFCGNSWQTTY
Ga0211548_1020426423300020454MarineIPTTIALVGEPSLTSVDPFVSKGTAKTYFCGNKQQTTY
Ga0211514_1013346513300020459MarineNSFIPAKIALVGEPSLTSVDPFVSKGTAKTSFCGNRLQTTY
Ga0211715_1000847393300020476MarineFIPTTIALVGEPSLTSVDPFVSKGTAKTYFCGNKQQTTY
Ga0211585_1020752313300020477MarineKIALVGEPSLTSVDPFVSKGTAKTFFCGNRGQTTY
Ga0211503_1016231113300020478MarineTKIALVGEPSLTSVDPFVSKGTAKTFFCGNNWQTTY
Ga0211503_1031323313300020478MarineTKIALVGEPSLTSVDPFVSKGTAKTFFCGNSRQITY
Ga0211503_1068036213300020478MarineEPSLTSVDPFVSKGTAKTIFCGNSKQTIYRGSKSQ
Ga0206686_116984513300021065SeawaterLLNFQTYFIIPTTITLVGEPSLTSVDPFVSKGTAKTFFCGNSWQITY
Ga0206685_1028020123300021442SeawaterIFPTKIALVGEPSLTSVDPFVSKGTAKTFFCGNSWQTTY
Ga0232637_1048137313300021980Hydrothermal Vent FluidsHNSFIPTKIALVGEPSLTSVDTFVFKGTAKTSFCGNSWQATY
Ga0208832_10102463300025184Deep OceanSFIPTKIALVGESSLTSVDTFVSKGTAKTSFYGNSWQATY
Ga0208206_103966023300025235Deep OceanSFIPTKTALVGEPSLTSVDPFVSKGTAKTSLCGNSWQATY
Ga0208747_102311013300026074MarineHNSFIPTKIALVGEPSLTSVDPFVSKGTAKTSFCGNSWKTTYSGSKSQ
Ga0208764_1043013813300026321MarineFIPTKIALVGEPSLTSVDPFVSKGTAKTYFCGNRQQTTY
Ga0209034_1017301013300027755MarinePTKSALVGEPSLTSVDPFASKGTAKTSLCGNSTQPTY
Ga0209501_1003972063300027844MarinePTKITLVGEPSLTSVDPFVSKGTAKTSFCGNSQQTTY
Ga0209501_1034883213300027844MarineFIPTKIALVGEPSLTSVDPFVAKGTAKTFFCGNSLQITY
Ga0257109_103363513300028487MarineVGEPSLTSVDPFVPKGTAKTFFCGNRWQTTYRGSKSQ
Ga0315328_1032600223300031757SeawaterKIALAGEPSLTSVDPFASKGTAKTSFCGNSQQATY
Ga0310121_1014248513300031801MarineNSFIPANNALVGEPSLTSVDLFVSKDTAKTSFCGNSWQTTY
Ga0310123_1014473913300031802MarinePFIPAKHALVGEPSLTSVDLFVSKDTAKTSFCGNSWQTTY
Ga0310120_1018056433300031803MarineFIPTKIALVGEPSLTSVDTFVSKGTAKTSFCGNSWQATY
Ga0310125_1012810833300031811MarinePTKNALVGEPSLTSVDPFVSKGTAKTSFCVNSWQATY
Ga0315318_1034305313300031886SeawaterLFTPTNIALVGEPSLTSVDPFVSKGTAKTFFCGNRWQITYRGSKSQ
Ga0310344_1046304113300032006SeawaterKHNSFIPTKITLVGEPSLTSVDPFVAKGTAKTSFCGNRWQTTY
Ga0315324_1010648023300032019SeawaterKHNSFIPTKIALVGEPSLTSVDPFVSKGTAKTSFCGNSWKTTYSGSKSQ
Ga0315333_1006382433300032130SeawaterVFKHNLFTPTNIALVGEPSLTSVDPFVPKGTAKTFFCGNRWQATYRGSKSQ
Ga0315336_110494313300032132SeawaterKITLVGEPSLTSVDPFVSKGTAKTFFCGNSWQTTY
Ga0315334_1031413813300032360SeawaterTYFIIPTTITLVGEPSLTSVDPFVSKGTAKTFFCGNSWQITYRGSKSQ
Ga0315334_1172738423300032360SeawaterNLFIPTNIALVGETSLTSVDPFVPKGTAKTFFCGNRWETTYRGSKSQQIKIKLKI


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.