Metagenome / Metatranscriptome Family F101262

Basic Information
Family ID	F101262
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	43 residues
Representative Sequence	QATDARANLAGNRERDSERTNNNSDSPTTISGRNAQGEGRSSQ
Number of Associated Samples	93
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	1.96 %
% of genes near scaffold ends (potentially truncated)	95.10 %
% of genes from short scaffolds (< 2000 bps)	84.31 %
Associated GOLD sequencing projects	93
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.32

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (86.275 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater (20.588 % of family members)
Environment Ontology (ENVO)	Unclassified (55.882 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (56.863 % of family members)

Multiple Sequence Alignments

Select alignment to view:

Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58. 1LBLPr_01507170 22222208917 3PR_CR_10_Liq_1_inCRDRAFT_10782682 4B570J14230_101351701 5ML7_101037011 6B570J29585_10054562 7B570J29587_10042291 8JGI25924J51412_10015896 9Ga0066599_1010690932 10Ga0049080_101637392 11Ga0049082_100083305 12Ga0078894_115389281 13Ga0079957_13091951 14Ga0075502_10627543 15Ga0075511_12005201 16Ga0075476_100911662 17Ga0102921_12595402 18Ga0102923_10146211 19Ga0102870_12315701 20Ga0102937_11231071 21Ga0105745_10996381 22Ga0114343_11053932 23Ga0114347_11743421 24Ga0114350_10448631 25Ga0114355_10107094 26Ga0114355_12107682 27Ga0114363_10484191 28Ga0102963_13926402 29Ga0114973_103621721 30Ga0114980_100874423 31Ga0114980_104779571 32Ga0114968_103473851 33Ga0114966_101563832 34Ga0114969_102092852 35Ga0129351_12331682 36Ga0129333_103780912 37Ga0129333_115054432 38Ga0139556_10297722 39Ga0153799_10468791 40Ga0157136_10034081 41Ga0164292_104266941 42Ga0170791_107497871 43Ga0182082_11373141 44Ga0194112_102916751 45Ga0211736_101430503 46Ga0211734_106132041 47Ga0181602_1000450212 48Ga0207910_1094952 49Ga0208088_10493062 50Ga0208697_10148391 51Ga0208697_10259771 52Ga0208234_10154132 53Ga0208858_10296431 54Ga0208599_10459541 55Ga0208485_10321961 56Ga0213869_102582471 57Ga0212119_10340532 58Ga0222647_10205831 59Ga0222652_10260412 60Ga0244775_106789061 61Ga0256345_10835771 62Ga0256341_10552242 63Ga0255283_10009111 64Ga0256336_10325372 65Ga0255267_10206532 66Ga0208147_11056261 67Ga0208161_10807702 68Ga0209937_10560362 69Ga0255154_10023877 70Ga0209247_10766511 71Ga0209297_100043524 72Ga0209087_12129891 73Ga0209355_11498771 74Ga0209107_100297304 75Ga0209354_102537652 76Ga0247723_10767462 77Ga0255172_10072273 78Ga0255172_10544041 79Ga0247839_13343812 80Ga0247844_100385615 81Ga0247840_101020781 82Ga0315907_107456802 83Ga0315909_109247782 84Ga0315906_108990332 85Ga0335396_100045051 86Ga0334994_0253506_783_917 87Ga0334996_0554332_304_447 88Ga0335003_0258016_679_801 89Ga0335003_0373110_488_619 90Ga0334979_0224331_2_136 91Ga0334995_0312027_2_142 92Ga0335000_0729348_417_539 93Ga0335010_0448962_518_661 94Ga0335010_0669977_3_146 95Ga0335012_0383083_577_690 96Ga0335012_0611961_371_502 97Ga0335036_0667695_493_618 98Ga0335063_0375475_1_138 99Ga0335016_0172649_1310_1444 100Ga0335049_0317298_3_152 101Ga0335049_0419054_719_862 102Ga0335007_0611189_8_151
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58. 1LBLPr_01507170 22222208917 3PR_CR_10_Liq_1_inCRDRAFT_10782682 4B570J14230_101351701 5ML7_101037011 6B570J29585_10054562 7JGI25924J51412_10015896 8Ga0066599_1010690932 9Ga0079957_13091951 10Ga0075511_12005201 11Ga0075476_100911662 12Ga0102923_10146211 13Ga0102937_11231071 14Ga0105745_10996381 15Ga0181602_1000450212 16Ga0207910_1094952 17Ga0208088_10493062 18Ga0208599_10459541 19Ga0212119_10340532 20Ga0222647_10205831 21Ga0244775_106789061 22Ga0208147_11056261 23Ga0209937_10560362 24Ga0255154_10023877 25Ga0335396_100045051
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42. 1Ga0335003_0373110_488_619 2LBLPr_01507170 32222208917 4PR_CR_10_Liq_1_inCRDRAFT_10782682 5B570J14230_101351701 6JGI25924J51412_10015896 7Ga0066599_1010690932 8Ga0079957_13091951 9Ga0075502_10627543 10Ga0102921_12595402 11Ga0102923_10146211 12Ga0102937_11231071 13Ga0105745_10996381 14Ga0114350_10448631 15Ga0114969_102092852 16Ga0129333_103780912 17Ga0170791_107497871 18Ga0194112_102916751 19Ga0211736_101430503 20Ga0181602_1000450212 21Ga0207910_1094952 22Ga0208088_10493062 23Ga0208697_10148391 24Ga0208234_10154132 25Ga0208599_10459541 26Ga0213869_102582471 27Ga0212119_10340532 28Ga0222647_10205831 29Ga0222652_10260412 30Ga0244775_106789061 31Ga0256341_10552242 32Ga0255283_10009111 33Ga0208147_11056261 34Ga0208161_10807702 35Ga0209937_10560362 36Ga0255154_10023877 37Ga0209247_10766511 38Ga0247723_10767462 39Ga0247840_101020781 40Ga0315909_109247782 41Ga0315906_108990332 42Ga0335003_0258016_679_801 43Ga0334995_0312027_2_142
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 36.62% β-sheet: 0.00% Coil/Unstructured: 63.38%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.32
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.32
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Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF14550	Peptidase_S78_2	40.20
PF04586	Peptidase_S78	36.27
PF05065	Phage_capsid	8.82
PF02945	Endonuclease_7	0.98
PF10145	PhageMin_Tail	0.98
PF04860	Phage_portal	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG3740	Phage head maturation protease	Mobilome: prophages, transposons [X]	36.27
COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	Mobilome: prophages, transposons [X]	8.82

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	13.73 %
Unclassified	root	N/A	86.27 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.27 %
Viruses	superkingdom	All Organisms → Viruses	13.73 %

Name	Rank	Taxonomy	Distribution
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	2.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.78 %
Unclassified	root	N/A	86.27 %

Name	Rank	Taxonomy	Distribution
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	2.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.78 %
Unclassified	root	N/A	86.27 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.78 %
Unclassified	root	N/A	86.27 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	2.94 %

Name	Rank	Taxonomy	Distribution
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.78 %
Unclassified	root	N/A	86.27 %

Name	Rank	Taxonomy	Distribution
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	0.98 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	1.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.78 %
Unclassified	root	N/A	86.27 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.78 %
Siphoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae	0.98 %
Unclassified	root	N/A	86.27 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1.96 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.78 %
Samistivirus	genus	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus	0.98 %
Unclassified	root	N/A	86.27 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1.96 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.78 %
Streptomyces virus Jay2Jay	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus → Streptomyces virus Jay2Jay	0.98 %
Unclassified	root	N/A	86.27 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1.96 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.78 %
Streptomyces phage Jay2Jay	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus → Streptomyces virus Jay2Jay → Streptomyces phage Jay2Jay	0.98 %
Unclassified	root	N/A	86.27 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1.96 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
(restricted) 3300028553\|Ga0247839_1334381	Not Available	556	Open in IMG/M
(restricted) 3300028571\|Ga0247844_1003856	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	21247	Open in IMG/M
(restricted) 3300028581\|Ga0247840_10102078	Not Available	1884	Open in IMG/M
2149837010\|LBLPr__contig01468	Not Available	803	Open in IMG/M
2222084000\|2222177710	Not Available	523	Open in IMG/M
3300000385\|PR_CR_10_Liq_1_inCRDRAFT_1078268	Not Available	505	Open in IMG/M
3300001282\|B570J14230_10135170	Not Available	715	Open in IMG/M
3300001336\|ML7_10103701	All Organisms → Viruses → Predicted Viral	1560	Open in IMG/M
3300002275\|B570J29585_1005456	Not Available	923	Open in IMG/M
3300002296\|B570J29587_1004229	Not Available	1098	Open in IMG/M

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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	98.04%
Terrestrial	Environmental → Terrestrial	1.96%

Habitat	Taxonomy	Distribution
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.98%
Freshwater	Environmental → Aquatic → Freshwater	76.47%
Marine	Environmental → Aquatic → Marine	17.65%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	3.92%
Soil	Environmental → Terrestrial → Soil	0.98%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	9.80%
Ice	Environmental → Aquatic → Freshwater → Ice	0.98%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	4.90%
Lake	Environmental → Aquatic → Freshwater → Lake	42.16%
Lentic	Environmental → Aquatic → Freshwater → Lentic	19.61%
Oceanic	Environmental → Aquatic → Marine → Oceanic	0.98%
Pond	Environmental → Aquatic → Freshwater → Pond	0.98%
River	Environmental → Aquatic → Freshwater → River	7.84%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	3.92%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	3.92%
Unclassified	Environmental → Aquatic → Marine → Unclassified	1.96%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.98%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.98%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.98%

Habitat	Taxonomy	Distribution
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	7.84%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	2.94%
Glacial Lake	Environmental → Aquatic → Freshwater → Ice → Glacial Lake	0.98%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	0.98%
Oil-Contaminated	Environmental → Aquatic → Marine → Oceanic → Oil-Contaminated	0.98%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	1.96%
Sediment	Environmental → Aquatic → Freshwater → Pond → Sediment	0.98%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	42.16%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	10.78%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	9.80%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	7.84%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	3.92%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	3.92%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	1.96%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.98%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.98%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	4.90%
Benthic Lake	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Benthic Lake	0.98%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	0.98%
Enviromental	Environmental → Aquatic → Marine → Unclassified → Unclassified → Enviromental	0.98%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	2.94%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	0.98%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	0.98%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	20.59%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	7.84%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	7.84%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	5.88%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	3.92%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	2.94%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	0.98%
Freshwater	Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater	0.98%
Freshwater	Environmental → Aquatic → Freshwater → Pond → Sediment → Freshwater	0.98%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment	0.98%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	7.84%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	4.90%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.98%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	1.96%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	2.94%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	5.88%
Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake	0.98%
Marine	Environmental → Aquatic → Marine → Oceanic → Oil-Contaminated → Marine	0.98%
Pond Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Pond Soil	0.98%
Pond Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water	1.96%
Saline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water	1.96%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	1.96%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	0.98%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2149837010	Fresh water microbial communities from LaBonte Lake, Laramie, Wyoming, sample from pre-bloom	Environmental	Open in IMG/M
2222084000	Marine microbial communities from Deepwater Horizon oil blowout, Alabama, USA - Oil_dispersant_2	Environmental	Open in IMG/M
3300000385	Marine microbial community from Cabo Rojo, Puerto Rico - PR CR 10% Liquid 1	Environmental	Open in IMG/M
3300001282	Freshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion	Environmental	Open in IMG/M
3300001336	ML7	Environmental	Open in IMG/M
3300002275	Freshwater microbial communities from Lake Mendota, WI - 06JUL2012 deep hole epilimnion	Environmental	Open in IMG/M
3300002296	Freshwater microbial communities from Lake Mendota, WI - 02JUN2012 deep hole epilimnion	Environmental	Open in IMG/M
3300003491	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD	Environmental	Open in IMG/M
3300004282	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Initial sediment	Environmental	Open in IMG/M
3300005582	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF	Environmental	Open in IMG/M

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Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
LBLPr_01507170	2149837010	Freshwater	NTAQNRERDTERSNNQSDGPGAASGRNAQGEGPASA
2222208917	2222084000	Marine	TRANTARNRQRDAERMNEQSDGAGAISGRNPKGEGRSSS
PR_CR_10_Liq_1_inCRDRAFT_10782682	3300000385	Enviromental	LPQIPSGEEPLQLNSRQAADARANTARNRERDAERMNNNSDSVATTTGRNPQGEGRRTS*
B570J14230_101351701	3300001282	Freshwater	TAGNRARDTERTNNQSDSTTTVSGRNAQGQGRSSQ*
ML7_101037011	3300001336	Benthic Lake	PLVLGARQAADARANTMQNRERDAERTNNNSDSVATTTGRNPQGEGRRTQ*
B570J29585_10054562	3300002275	Freshwater	PFIMSPRQATDARANLAGTRERDAERTNNASDSPTTISGRNPQGEGRSSQ*
B570J29587_10042291	3300002296	Freshwater	DPFVMSPRQATDSRANLAGTRQRDSERTNNNSDSPTTISGRNPQGEGRSSQ*
JGI25924J51412_10015896	3300003491	Freshwater Lake	MSPRQATDAAANLAGNRQRDSERTNSQSDGTATTTGRNPQGEGRASQ*
Ga0066599_1010690932	3300004282	Freshwater	PRQATDARANMAGNRTRDAERANNSSDNTATIAGRNAQGEGRASQ*
Ga0049080_101637392	3300005582	Freshwater Lentic	NLAGNRQRDAERTNNNSDSTTTISGRNAQGEGRSSQ*
Ga0049082_100083305	3300005584	Freshwater Lentic	TPFVMSPRQATDAAANLAGNRQRDSERTNSQSDGTATTTGRNPQGEGRASQ*
Ga0078894_115389281	3300005662	Freshwater Lake	QATDARANLAGDRQRDSERTNNNSDSPTTISGRNAQGEGRSSQ*
Ga0079957_13091951	3300005805	Lake	RQATDARANAARNRQRDSERANNASDSTATVSGRNPKGEGNSSE*
Ga0075502_10627543	3300006357	Aqueous	RQAADARANNMQNRERDSERMNNNSDSVATTTGRNPQGEGRRTQ*
Ga0075511_12005201	3300006402	Aqueous	NMQNRERDSERMNNNSDSVATTTGRNPQGEGRRTQ*
Ga0075476_100911662	3300006867	Aqueous	DPFEMSSRQLTDARANLAGNRERDSERSNNQSDSPSTVSGRNAQGEGAASE*
Ga0102921_12595402	3300007603	Estuarine	RQATDARADLAGNRQRDAERTNSQSDGAATLDGRNPQGEGRASQ*
Ga0102923_10146211	3300007606	Estuarine	PRQATDAAANLSGNRARDAQRTNNNSDSPSTVAGRNPAGEGRSSQ*
Ga0102870_12315701	3300007625	Estuarine	NLSSNRARDAQRTNNNSDSPSTVAGRNPAGEGRSSQ*
Ga0102937_11231071	3300007628	Pond Soil	RSADARANAQQTRQRDSDRTANQSDGEATLEGRNPQGEGRSSE*
Ga0105745_10996381	3300007972	Estuary Water	ARANLAGNRERDAERVNNNSDSTSTVSGRNAQGEGRSSQ*
Ga0114343_11053932	3300008110	Freshwater, Plankton	MTPRQATDARANLAGNRQRDAERANNSSDSPASLEGRNPQGEGRSSQ*
Ga0114347_11743421	3300008114	Freshwater, Plankton	MSQRQATDARANLAGNRERDSERTNNNSDSSTTIAGRNPQGEGRSSQ*
Ga0114350_10448631	3300008116	Freshwater, Plankton	RQSTDARANLAGNRQRDAERTNNNSDSPTTIAGRNPQGEGRSSQ*
Ga0114355_10107094	3300008120	Freshwater, Plankton	MSPRQATDARANLAGNRERDSERTNNNSDSSTTIAGRNPQGEGRSSQ*
Ga0114355_12107682	3300008120	Freshwater, Plankton	SRANLAGNRQRDAERTNNNSDSPTTIAGRNAQGEGRSSQ*
Ga0114363_10484191	3300008266	Freshwater, Plankton	QATDARADLAGNRERDAERTNNNSDSPTTISGRNPQGEGRSSQ*
Ga0102963_13926402	3300009001	Pond Water	LVLGARQAADARANNMQNRERDSERMNNNSDSVATTTGRNPQGEGRRTQ*
Ga0114973_103621721	3300009068	Freshwater Lake	ATDARANLAGDRQRDSERTNNNSDSPTTISGRNAQGEGRSSQ*
Ga0114980_100874423	3300009152	Freshwater Lake	FVMSPRQATDARANLAGNRQRDAERTNNNSDSPTTISGRNAQGEGRSSQ*
Ga0114980_104779571	3300009152	Freshwater Lake	DARANLAGNRQRDAERTNNNSDSTTTVSGRNPQGEGRSSQ*
Ga0114968_103473851	3300009155	Freshwater Lake	RQATDARANLAGDRQRNSERTNNNSDSPTTISGRNAQGEGRSSQ*
Ga0114966_101563832	3300009161	Freshwater Lake	AGDRQRDSERTNNNSDSPTTISGRNAQGEGRSSQ*
Ga0114969_102092852	3300009181	Freshwater Lake	ARANLAGNRSRDAERANNASDSTATIAGRNAQGEGRASQ*
Ga0129351_12331682	3300010300	Freshwater To Marine Saline Gradient	EEPLVLGARQAADARANNMQNRERDSERMNNNSDSVATTTGRNPQGEGRRTQ*
Ga0129333_103780912	3300010354	Freshwater To Marine Saline Gradient	PFIMSPRQATDARADLAGNRQRDAERANNNSDSPSTISGRNPQGEGRSSQ*
Ga0129333_115054432	3300010354	Freshwater To Marine Saline Gradient	PRQATDARANLAGNRERDAERTNNNSDSPTTIYGRNAQGEGRSSQ*
Ga0139556_10297722	3300011011	Freshwater	ATDAAANLAGNRQRDSERTNSQSDGTATTTGRNPQGEGRSSQ*
Ga0153799_10468791	3300012012	Freshwater	ATDTRANLAGNRQRDAERTNNNSDSTTTISGRNAQGEGRSSQ*
Ga0157136_10034081	3300012282	Freshwater	DQPFVMSPRQATDARANLAGDRQRDSERTNNNSDSPTTISGRNAQGEGRSSQ*
Ga0164292_104266941	3300013005	Freshwater	ANLAGDRQRDSERTNNNSDSPTTISGRNAQGEGRSSQ*
Ga0170791_107497871	3300013295	Freshwater	RQATDAGANLADNRQRDAQRTNNNSDSTSTTTGRNAQGEGRASQ*
Ga0182082_11373141	3300016771	Salt Marsh	EEPLVLGARQAADARANNMQNRERDSERMNNNSDSVATTTGRNPQGEGRRTQ
Ga0194112_102916751	3300020109	Freshwater Lake	TDARANLARNRQRDTERANNNSDSTTTLSGRNAQGEGRSSE
Ga0211736_101430503	3300020151	Freshwater	FTMSPRQETDARANLAGTRQRDAERTNNNSDSTTTLSGRNPKGEGRASQ
Ga0211734_106132041	3300020159	Freshwater	DQPFVMSPRQATDARANLAGTRQRDSERTNNNSDSTTTVSGRNAQGEGRSSQ
Ga0181602_1000450212	3300020173	Salt Marsh	MRANTARNRQRDTERSNNQADSPGTVDGRNPQGEGPASE
Ga0207910_1094952	3300020489	Freshwater	ANTAQNRQRDSERANNSSDNTATVSGRNPAGEGRSSE
Ga0208088_10493062	3300020505	Freshwater	RADLAGNRQRDTERANNASDSVATTTGRNPAGEGRRTS
Ga0208697_10148391	3300020507	Freshwater	FVMSPRQATDARANLAGTRERDSERTNNNSDSSTTIAGRNPQGEGRASQ
Ga0208697_10259771	3300020507	Freshwater	RANLAGNRQRDAERTNNNSDSTTTISGRNAQGEGRSSQ
Ga0208234_10154132	3300020515	Freshwater	ANLAGTRERDAERTNNASDSPTTISGRNPQGEGRSSQ
Ga0208858_10296431	3300020524	Freshwater	PFEMTPRQATDARANLAGNRERDSQRANNNSDSPSTISGRNAQGEGRSSN
Ga0208599_10459541	3300020554	Freshwater	QATDARANLAGNRQRDAERTNNSSDSPASLEGRNPQGEGRSSQ
Ga0208485_10321961	3300020573	Freshwater	TMSPRQATDARANLAGNRQRDVERTNNNSDSPTTIAGRNPQGEGRSSQ
Ga0213869_102582471	3300021375	Seawater	RQLTDARANLAGNRERDSERSNNQSDSPSTVSGRNAQGEGAASE
Ga0212119_10340532	3300022543	Freshwater	DQPLELNARSAADARANTAGNRSRDTERQNNSSDSTTTISGRSPQGEGRASQ
Ga0222647_10205831	3300022827	Saline Water	TDARANLAQNRERDSERSNNQADSSGTIDGRNAQGEGRASN
Ga0222652_10260412	3300022853	Saline Water	RANLAGNRSRDAERSNNESDSTSTLSGRNAQGEGTSSD
Ga0244775_106789061	3300024346	Estuarine	SRANAAGTRARDSERSSNSSDSTATVAGRNPQGEGRSSE
Ga0256345_10835771	3300024552	Freshwater	ARADLAGNRQRDAERANNNSDSPSTISGRNPQGEGRSST
Ga0256341_10552242	3300024556	Freshwater	MSPRQATDARANLAGNRERDAQRANNNSDSPSTVSGRNPQGEGRSAQ
Ga0255283_10009111	3300024557	Freshwater	DARANLAGNRERDAERANNVSDSPATIDGRNPQGEGRASQ
Ga0256336_10325372	3300024562	Freshwater	ARANLAGNRERDAERANNNSDSPSTISGRNPQGEGRSSQ
Ga0255267_10206532	3300024867	Freshwater	FTMSPRQATDARANLGGTRQRDSERTNNNSDSPSTISGRNAQGEGRSSQ
Ga0208147_11056261	3300025635	Aqueous	TDARANLAGNRQRDTERANNASDSPTTISGRNAQGEGRAAQ
Ga0208161_10807702	3300025646	Aqueous	EMSPRQATDARANLAGNRNRDAERTNNNSDSTSTVSGRNAQGEGPSSE
Ga0209937_10560362	3300026094	Pond Water	DARANGNRQRDAERNNTQSDGTATIEGRNPQGEGRASE
Ga0255154_10023877	3300027467	Freshwater	NMGGTRQRDSERTNNNSDSPSTISGRNAQGEGRSSQ
Ga0209247_10766511	3300027468	Freshwater Lake	PRQETDARANLAGNRERDSQRANNNSDSPSTIAGRNAQGEGRSSN
Ga0209297_100043524	3300027733	Freshwater Lake	AAANLSGNRARDAQRTNNNSDSPSTVAGRNPAGEGRSSQ
Ga0209087_12129891	3300027734	Freshwater Lake	TDAAANLAGNRQRDSERTNSQSDGTATTTGRNPQGEGRASQ
Ga0209355_11498771	3300027744	Freshwater Lake	DTPFVMSPRQATDARANLAGNRQRDAERTNNNSDSPTTISGRNAQGEGRSSQ
Ga0209107_100297304	3300027797	Freshwater And Sediment	DQPFVMSPRQATDARANLAGDRQRDSERTNNNSDSPTTISGRNAQGEGRSSQ
Ga0209354_102537652	3300027808	Freshwater Lake	FEMSPRQETDARANLAGNRERDSQRANNNSDSPSTIAGRNAQGEGRSSN
Ga0247723_10767462	3300028025	Deep Subsurface Sediment	TDARANLSGNRERDSQRTNNNSDSSSTISGRNPQGEGRSST
Ga0255172_10072273	3300028103	Freshwater	TDARANLGGTRQRDSERTNNNSDSPSTISGRNAQGEGRSSQ
Ga0255172_10544041	3300028103	Freshwater	ADLAGNRQRDAERANNNSDSPSTISGRNPQGEGRSST
(restricted) Ga0247839_13343812	3300028553	Freshwater	ANLAGDRQRDSERTNNNSDSPTTISGRNAQGEGRSSQ
(restricted) Ga0247844_100385615	3300028571	Freshwater	RANLAGNRERDSQRANNSSDSPATLEGRNPQGEGRSSQ
(restricted) Ga0247840_101020781	3300028581	Freshwater	ATDARANLAGNRERDSQRANNSSDSPATLEGRNPQGEGRSSQ
Ga0315907_107456802	3300031758	Freshwater	RANLAGNRERDAERANNESDSPTTISGRNPQGEGRASQ
Ga0315909_109247782	3300031857	Freshwater	WANLAGNRERDSERANNVSDSPATLSGRNPQGEGRSSQ
Ga0315906_108990332	3300032050	Freshwater	DARANLAGNRERDAERTNNNSDSPSTISGRNPQGEGRSST
Ga0335396_100045051	3300032462	Freshwater	LAGNRERDSQRANNSSDSPATLAGRNPQGEGRASQ
Ga0334994_0253506_783_917	3300033993	Freshwater	RQETDARANLAGNRERDSQRANNNSDSPSTIAGRNAQGEGRSSN
Ga0334996_0554332_304_447	3300033994	Freshwater	MSPRQATDARANLSGDRQRDSERTNNNSDSSTTISGRNAQGEGRSSQ
Ga0335003_0258016_679_801	3300033995	Freshwater	DTRANLAGNRQRDAERTNNNSDSTTTISGRNAQGEGRSSQ
Ga0335003_0373110_488_619	3300033995	Freshwater	QATDARANLAGNRERDSERTNNNSDSPTTISGRNAQGEGRSSQ
Ga0334979_0224331_2_136	3300033996	Freshwater	RQATDARANLAGDRQRDSERTNNNSDSPTTISGRNAQGEGRSSQ
Ga0334995_0312027_2_142	3300034062	Freshwater	SPRQATDARANLAGTRQRDSERTNNNSDSTTTVAGRNAQGEGRSSQ
Ga0335000_0729348_417_539	3300034063	Freshwater	DARANLAGTRQRDAERTNNNSDSTTTVSGRNPQGEGRASQ
Ga0335010_0448962_518_661	3300034092	Freshwater	MSPRQATDARANLAGDRQRDSERTNNNSDSPTTISGRNAQGEGRSSQ
Ga0335010_0669977_3_146	3300034092	Freshwater	MTPRQATDARANLAGNRQRDAERTNNSSDSTATLEGRNPQGEGRSSQ
Ga0335012_0383083_577_690	3300034093	Freshwater	ADLAGNRQRDTERANNASDSVATTTGRNPAGEGRRTS
Ga0335012_0611961_371_502	3300034093	Freshwater	QATDARANLAGDRQRDSERTNNNSDSPTTISGRNAQGEGRSSQ
Ga0335036_0667695_493_618	3300034106	Freshwater	TDARANLAGNRERDAERTNNNSDSTTTVAGRNPQGEGRASQ
Ga0335063_0375475_1_138	3300034111	Freshwater	PRQATDARANLAGDRQRDSERTNNNSDSPTTISGRNAQGEGRSSQ
Ga0335016_0172649_1310_1444	3300034166	Freshwater	RQATDARANLAGNRERDSERTNNNSDSPTTISGRNAQGEGRSSQ
Ga0335049_0317298_3_152	3300034272	Freshwater	FTMSPRQATDARANLAGNRQRDAERTNNNSDSPTTIAGRNPQGEGRSSQ
Ga0335049_0419054_719_862	3300034272	Freshwater	MTPRQATDARANLAGNRQRDAERTNSQSDGEATLDGRNPQGEGRASQ
Ga0335007_0611189_8_151	3300034283	Freshwater	MSPRQATDARANLAGNRQRDAERTNNNSDSPTTISGRNAQGEGRSSQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters