NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F101186

Metagenome Family F101186

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F101186
Family Type Metagenome
Number of Sequences 102
Average Sequence Length 44 residues
Representative Sequence MLSENQRKLFADFHKSVEAEGILDEKTSHLIKVAAAMAFGCYP
Number of Associated Samples 73
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 87.25 %
% of genes near scaffold ends (potentially truncated) 17.65 %
% of genes from short scaffolds (< 2000 bps) 73.53 %
Associated GOLD sequencing projects 62
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (82.353 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment
(27.451 % of family members)
Environment Ontology (ENVO) Unclassified
(41.176 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Sediment (saline)
(35.294 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.
1ASMM170b_07290370
2TDF_OR_ARG05_123mDRAFT_10181974
3Ga0051980_100899932
4Ga0055475_100001264
5Ga0055443_102589231
6Ga0068713_1000046174
7Ga0070728_1001484810
8Ga0070728_101066363
9Ga0070728_101767042
10Ga0070729_100426253
11Ga0070729_100716131
12Ga0070727_101084112
13Ga0070726_100184332
14Ga0070726_101019583
15Ga0070722_106025471
16Ga0070724_100384053
17Ga0070724_101662683
18Ga0070724_102526871
19Ga0070723_100465022
20Ga0070725_100391192
21Ga0099972_100434593
22Ga0099972_106096581
23Ga0099972_106183591
24Ga0099972_108115301
25Ga0099972_131090881
26Ga0111484_11093432
27Ga0114372_10052871
28Ga0102956_12945681
29Ga0115863_101792310
30Ga0102958_13857652
31Ga0102962_12099781
32Ga0117905_10323134
33Ga0118736_100101245
34Ga0114921_102064384
35Ga0117909_10741434
36Ga0117909_12776534
37Ga0114925_112436562
38Ga0118657_100792564
39Ga0123573_101614345
40Ga0114923_104354172
41Ga0118731_1036666141
42Ga0118731_1061232653
43Ga0118731_1061917431
44Ga0118731_1095515251
45Ga0118731_1106421781
46Ga0118731_1108320271
47Ga0118731_1152642303
48Ga0118733_1007899513
49Ga0118733_1011811954
50Ga0118733_1066164351
51Ga0164320_101526403
52Ga0164320_104360242
53Ga0164321_101546953
54Ga0164321_102150612
55Ga0224503_102844582
56Ga0224513_104466131
57Ga0233404_100889481
58Ga0233409_100007928
59Ga0233409_101429682
60Ga0233408_100106604
61Ga0255039_103585021
62Ga0255043_100882203
63Ga0209991_100181202
64Ga0255046_100226032
65Ga0255046_103325781
66Ga0255045_101171121
67Ga0210014_12051492
68Ga0210027_12591161
69Ga0210110_10046535
70Ga0210028_11072212
71Ga0210036_12872381
72Ga0209163_100056222
73Ga0209379_100728552
74Ga0209379_100807941
75Ga0209379_101589853
76Ga0209273_100153922
77Ga0209578_101608303
78Ga0209578_105576111
79Ga0209692_101455651
80Ga0209271_100133426
81Ga0233415_100425775
82Ga0255052_105802453
83Ga0255053_100344714
84Ga0255055_102630002
85Ga0255055_105281562
86Ga0209536_1000715822
87Ga0209536_1004930511
88Ga0209272_101072723
89Ga0209165_101247422
90Ga0209475_102075892
91Ga0265309_104244982
92Ga0265303_101213181
93Ga0307437_10180132
94Ga0315268_101409064
95Ga0316187_101708465
96Ga0316198_106660962
97Ga0316196_104174491
98Ga0316191_107671432
99Ga0316191_111098981
100Ga0316192_100806472
101Ga0316195_104578202
102Ga0316193_114121141
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 72.09%    β-sheet: 0.00%    Coil/Unstructured: 27.91%
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510152025303540MLSENQRKLFADFHKSVEAEGILDEKTSHLIKVAAAMAFGCYPSequenceα-helicesβ-strandsCoilSS Conf. score
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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
82.4%17.6%
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Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Sediment
Groundwater
Aquifer
Marine Sediment
Deep Subsurface
Seawater
Marine
Sediment
Marine Sediment
Worm Burrow
Marine
Marine
Salt Marsh
Sediment, Intertidal
Natural And Restored Wetlands
Mangrove Sediment
Coastal Water And Sediment
Marine Sediment
Marine Sediment
Seawater
Sediment
Sediment
Sediment
Marine Sediment
Mangrove Sediment
Soil
Enrichment Culture
3.9%3.9%8.8%11.8%3.9%27.5%3.9%2.9%2.9%3.9%4.9%2.9%
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
ASMM170b_072903702100351011Coastal Water And SedimentVLSENQRKLFADFHNSVEAEGILDEKTSHLIKVAAAMAFGCYP
TDF_OR_ARG05_123mDRAFT_101819743300000242MarineMLSENQRKIFGDFHESVEAERILDEKTSHMIKVAAAMAFGCYP*
Ga0051980_1008999323300003830GroundwaterMLSENQQRLFAEFHKSIEGEGILDGKTSHLIKVAAAMAFGCYP*
Ga0055475_1000012643300003988Natural And Restored WetlandsMLSENQREIFADFHRSVEAEGVLDEKTSHMIKLAVAMALGCYP*
Ga0055443_1025892313300004026Natural And Restored WetlandsVLSENQRKLFADFHNSVEAEGILDEKTSHLIKVAAAMVFGCYP*
Ga0068713_10000461743300005145Enrichment CultureMLSENQRKLFSEFHKSIEAEGILDEKTSHLIKVAAAMAIGCYP*
Ga0070728_10014848103300005588Marine SedimentMLSENQREIFADFHKSVDAEGTLDEKTSHMIKVAAAMAFGCYP*
Ga0070728_1010663633300005588Marine SedimentMISENQRRLFADFHKSVEAEGILDEKTSHLIKVALAMAFGCYP*
Ga0070728_1017670423300005588Marine SedimentVLSENQRKLFADFHNSVEAEGILDEKTSHLIKVAAAMAFGCYP*
Ga0070729_1004262533300005589Marine SedimentMLSENQRKIFADFHQSVEAEGILDEKTSHMIKVAAAMAFGCYP*
Ga0070729_1007161313300005589Marine SedimentMLSENQRKLFADFHKSVDAEGILDEKMSHLIKVAAAMAFGCYP*
Ga0070727_1010841123300005590Marine SedimentMLSENQRNIFADFHKSVEAEGALDEKTSHMIKVAAAMAFGCYP*
Ga0070726_1001843323300005600Marine SedimentMLSENQRKIFAEFHKSVEVEKALDEKTSHLIKVAAAMAFGCYP*
Ga0070726_1010195833300005600Marine SedimentMLSENQRELFADFYKSVEAEGILDEKTSHLIKIAAAMAFGCYP*
Ga0070722_1060254713300005601Marine SedimentMLSENQRKLFADFHKSVETEGILDEKTSHLIKIAAAMAFACYP*MEHL
Ga0070724_1003840533300005609Marine SedimentMLSENQRKIFADFHKSVEAEGILNEKTSHMIKMAAAIAFGCYP*
Ga0070724_1016626833300005609Marine SedimentMLSENQRNIFADFHKSVEVEGALDEKTSHMIKVAAAMAFGC
Ga0070724_1025268713300005609Marine SedimentVLSENQRKLFADFHNSVEAEGILDEKTSHLIKVAA
Ga0070723_1004650223300005612Marine SedimentMLSENQRKIFADFHESIEAEGILDEKTSHMIKVAAAMAFACYP*
Ga0070725_1003911923300005920Marine SedimentMLSENQRKIFADFHQSVEVEGILDEKMSHMIKVAAAMAFGCYP*
Ga0099972_1004345933300006467MarineMLSENQRKIFADFHKLVENEGILDEKTSHMIKMAAAIAFGCYP*
Ga0099972_1060965813300006467MarineSVLSENQRKLFADFHNSVEAEGILDEKTSHLIKVAAAMAFGCYP*
Ga0099972_1061835913300006467MarineMLSENQRKLFADFHKSVETEGILDEKTSHLIKIAAAMAFACYP*
Ga0099972_1081153013300006467MarineMLSENQQKIFADFHKSVEAEGALDDKTSHMIKMAAAIAFGCYP*
Ga0099972_1310908813300006467MarineVLSENQRKLFADFHNSVEAEGILDEKTSHLIKVAAAMAFGC
Ga0111484_110934323300007896SedimentMDVFLGKEKSMISENQRKIFADFHKSVEAEGALDDKTSHMIKMAAAIAFGCYP*
Ga0114372_100528713300008062Marine SedimentMLSENQRKLFADFHNSVEAEGILDEKTSHMIKVAAAMAFGCYP*
Ga0102956_129456813300009033SoilLSENQRKIFADFHNSVDAEGTLDEKTSHMIKVAAAMAFGCYS*
Ga0115863_1017923103300009034Sediment, IntertidalMLSGNQRKLFADFHKSVETEGILDEKTSHLIKIAAAMAFACYP*
Ga0102958_138576523300009035SoilMLSENQRKLFADFYKTAEAEGILDEKTSHLIKIAAAMAFACYP*
Ga0102962_120997813300009060SoilMLFENQRKIFADFHKSVEAEGVLDEKTSHLIKVAAAMSLGCYP*
Ga0117905_103231343300009105MarineMLSENQQSLFADFHKSVEAEGILDAKTSHLIKVAAAMAFGCYP*
Ga0118736_1001012453300009135Marine SedimentMLSENQRELFADFHKSVEAEGILDEKTSHLIKVAAAMAFGCYP*
Ga0114921_1020643843300009150Deep SubsurfaceMLSENQRKLFADFHKSVEAEGILDEKTSHLIKVAAAMAFGCYP*
Ga0117909_107414343300009320MarineMLSENQRKLFANFHKSVEAEGILDGKTSHLIKIAAAMAFGCYP*
Ga0117909_127765343300009320MarineMLSENQRKLFADFHKSAEAEGILDEKTSHLIKVAAAMAFGCYP*
Ga0114925_1124365623300009488Deep SubsurfaceMLSENQRKLFTDFHKSVEAEGILDEKTSHLIKVAAAMAFGCYP*
Ga0118657_1007925643300009506Mangrove SedimentMEKSMLSEKQRKIFADFHKSIEAEGALDDKTSHIVKITAAMAFGCYP*
Ga0123573_1016143453300009509Mangrove SedimentMLSESQPKLFADFHESVEAEGILDEKTAHMIKVAAAMAFACYP*
Ga0114923_1043541723300009788Deep SubsurfaceMLSENQRKIFADFHKSVEAEGILDQKTSHLIKVAAAMAFGCYP*
Ga0118731_10366661413300010392MarineMLSENQRKLFADFYKTVEAEGILDEKTSHLIKVAAAMAFGCYP*
Ga0118731_10612326533300010392MarineMDIFFGKEKSMLSENQQKIFADFHKSVEAEGALDDKTSHMIKMAAAIAFGCYP*
Ga0118731_10619174313300010392MarineVLSENQRKIFADFHNSVDAEGTFDEKTSHMIKVAAAMAFGCYP*
Ga0118731_10955152513300010392MarineMLSENQRKIFADFHKSVEAEGFLDQKTSHLIKVAAAMAFGCYP*
Ga0118731_11064217813300010392MarineMLAESQRKIFADFHKSVEAEGILDEKTSHMIKVAAAMAFGCYP*
Ga0118731_11083202713300010392MarineMLSENQRKIFADFHKSVEAEGILDEKTSHMIKVAAAMAFGCYP*
Ga0118731_11526423033300010392MarineMLSENQRNIFADFHKSVEAEGALDEKTSHMIKVAAAMAFG
Ga0118733_10078995133300010430Marine SedimentMDIFFGKEKSMLSENQQKIFADFHKSVEAEGALDDKTSHMIKMAAAIAFCCYP*
Ga0118733_10118119543300010430Marine SedimentMDVFSGKEKSMLSENQREIFAAFHKSVEAEGALDDKTSHMVKIAAAIAFGCYP*
Ga0118733_10661643513300010430Marine SedimentGEEKSMLSENQRKIFADFHESVEAEGILDEKTSHMIKVAAAMAFGCYP*
Ga0164320_1015264033300013098Marine SedimentMLSENQRKIFADFHKSVEAEGILDQKTSHLIKVAAAMAFGCDP*
Ga0164320_1043602423300013098Marine SedimentMLSENQRKLFADFHKSVEAEGILDEKTSHLIKIAAAMAFACYP*
Ga0164321_1015469533300014903Marine SedimentMLSENQRKLFADFHKSVEAEGILDEKTSHLIKVASAMAFGCYP*
Ga0164321_1021506123300014903Marine SedimentMLSENQRKIFADFHESVEAEGILGEKTSHMIKVAAAMAFGCYP*
Ga0224503_1028445823300022201SedimentKSMLSENQRKIFADFHKSVEAEGALDEKTSHMIKVAAAMAFGCYP
Ga0224513_1044661313300022220SedimentVLSENQRKLFADFHNSVEAEGILDEKTSHLIKVAAAMVFGCYP
(restricted) Ga0233404_1008894813300022913SeawaterMLSENQRKIFGDFHESVEAERILDEKTSHMIKVAAAMAFGCYP
(restricted) Ga0233409_1000079283300022938SeawaterMLSENQRKLFADFHKSVEAEGILDEKTSHLIKVAAAMAFGCYP
(restricted) Ga0233409_1014296823300022938SeawaterMLSENQRKLFADFHKSAEAEGILDEKTSHLIKVAAAMAFGCYP
(restricted) Ga0233408_1001066043300023089SeawaterMLSENQRKIFADFHKSVEAEGILDEKTAHLIKVAAAMAFGCYP
(restricted) Ga0255039_1035850213300024062SeawaterMLSENQRKIFADFHKSVEAEGILDQKTSHLIKVAAAMAFGCYP
(restricted) Ga0255043_1008822033300024338SeawaterMLSENQRKIFADFHKSVEAEGILDEKTSHMIKVAAAMAFGCYP
Ga0209991_1001812023300024429Deep SubsurfaceMLSENQRKLFTDFHKSVEAEGILDEKTSHLIKVAAAMAFGCYP
(restricted) Ga0255046_1002260323300024519SeawaterMLDENQRKIFADFHKSVEAEGILDEKTSHMIKVAAAMAFGCYP
(restricted) Ga0255046_1033257813300024519SeawaterMLSENQRKLFADFHKSVEAEGILDEKTSHLIKIAAAMAFACYP
(restricted) Ga0255045_1011711213300024528SeawaterMLSENQRKIFAEFHKSVEVERALDEKTSHLIKVAAAMAFGCY
Ga0210014_120514923300025016AquiferMLSENQQRLFAEFHKSIEGEGILDGKTSHLIKVAAAMAFGCYP
Ga0210027_125911613300025129AquiferMLSENQQRLFAEFHKSIEGEGILDGKTSHLIKVAAAM
Ga0210110_100465353300025565Natural And Restored WetlandsMLSENQREIFADFHRSVEAEGVLDEKTSHMIKLAVAMALGCYP
Ga0210028_110722123300025841AquiferMLSENQQRLFAEFHKSIEGEWILDGKTSHLIKVAAAMAFGCYP
Ga0210036_128723813300025844AquiferMLSENQQRLFAEFHKSIEGEGILDGKTSHLIKVAAAMAFGCYPXMEH
Ga0209163_1000562223300027536Enrichment CultureMLSENQRKLFSEFHKSIEAEGILDEKTSHLIKVAAAMAIGCYP
Ga0209379_1007285523300027758Marine SedimentMLSENQRKIFADFHKSVEAEGILNEKTSHMIKMAAAIAFGCYP
Ga0209379_1008079413300027758Marine SedimentMLSENQREIFADFHKSVDAEGTLDEKTSHMIKVAAAMAFGCYP
Ga0209379_1015898533300027758Marine SedimentMLSENQRKIFADFHKLVENEGILDEKTSHMIKMAAAIAFGCYP
Ga0209273_1001539223300027790Marine SedimentMLSENQRKIFADFHQSVEAEGILDEKTSHMIKVAAAMAFGCYP
Ga0209578_1016083033300027820Marine SedimentMDIFFGKEKSMLSENQQKIFADFHKSVEAEGALDDKTSHMIKMAAAIAFGCYP
Ga0209578_1055761113300027820Marine SedimentMLSENQRKIFADFHKLVENEGILDEKTSHMIKMAAAIA
Ga0209692_1014556513300027828Marine SedimentMISENQRRLFADFHKSVEAEVILDEKTSHLIKVALAMAFGCYP
Ga0209271_1001334263300027845Marine SedimentMISENQRRLFADFHKSVEAEGILDEKTSHLIKVALAMAFGCYP
(restricted) Ga0233415_1004257753300027861SeawaterMLSENQRELFADFHKSVEAEGILDEKTSHLIKVAAAMAFGCYP
(restricted) Ga0255052_1058024533300027865SeawaterKEKSVLSENQRKLFADFHNSVEAEGILDEKTSHLIKVAAAMAFGCYP
(restricted) Ga0255053_1003447143300027868SeawaterMLSENQRKIFADFHESVEAEGILDEKTSHMIKVAAAMAFGCYP
(restricted) Ga0255055_1026300023300027881SeawaterMLSENQRKIFADFHQSVEAEGILGEKTSHMIKVAAAMAFGCYP
(restricted) Ga0255055_1052815623300027881SeawaterMLSENQRKIFADFHQSVEAEGILDEKTSHMIKVAAAMAFGCYPXMEHLL
Ga0209536_10007158223300027917Marine SedimentMLSENQRKIFADFHESVEAEEILDKKTSHMIKVAAAMAFGCYP
Ga0209536_10049305113300027917Marine SedimentVLSEIQRKLFADFHNSVEAEGIFDEKTSHLIKVAAAMAFGCYP
Ga0209272_1010727233300027967Marine SedimentMLSENQQKIFADFHKSVEAEGALDDKTSHMIKMAAAIAFGCYP
Ga0209165_1012474223300027978Marine SedimentMLSENQRNIFADFHKSVEAEGALDEKTSHMIKVAAAMAFGCYP
Ga0209475_1020758923300027980Marine SedimentMLSENQRKLFADFHKSVDAEGILDEKMSHLIKVAAAMAFGCYP
Ga0265309_1042449823300028599SedimentVLSENQRKLFADFHNSVEAEGILDEKTSHLIKVAATMAFGCYP
Ga0265303_1012131813300028600SedimentVLSENQRKIFADFHNSVDAEGTFDEKTSHMIKVAAAMAFGCYP
Ga0307437_101801323300031275Salt MarshMLSENQRKIFADFHKSVEAEGILNEKTSHMIKMAAAIAFGRYP
Ga0315268_1014090643300032173SedimentMLSENQKKKFADFHKSVEVEGVLDEKTSHMIRLAAAMAFGCYP
Ga0316187_1017084653300032231Worm BurrowMLSENQRKIFAEFHKSVEVERALDEKTSHLIKVAAAMAFGCYP
Ga0316198_1066609623300032251SedimentMLSDNQRKTFADFHKLVENEGILNEKTSHMIKMAAAMAFGCYP
Ga0316196_1041744913300032252SedimentVLSENQRKIFADFHNSVDAEGTLDEKTSHMIKVAAAMAFGCYS
Ga0316191_1076714323300032258Worm BurrowMLSENQRKIFAEFHKSVEVERAFDEKTSHLIKVAAAMAFGCYP
Ga0316191_1110989813300032258Worm BurrowMLSENQRKLFADFYKTVEAEGILDEKTSHLIKVAAAMAFGCYP
Ga0316192_1008064723300032260Worm BurrowMLSENQRELFADFYKSVEAEGILDEKTSHLIKIAAAMAFGCYP
Ga0316195_1045782023300032263SedimentMLSENQRNLFADFHKSVEAEGILDAKTSHLIKIAAAMAFGCYP
Ga0316193_1141211413300033429SedimentRKEKSMLSENQRKLFADFYKTVEAEGILDEKTSHLIKVAAAMAFGCYP


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