Metagenome / Metatranscriptome Family F101014

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101014
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	98 residues
Representative Sequence	MLLFVHVLLHPLVHAVGASGAATSLAVSTSSAQSDGNLNAGDQCELCRVGHNTIVTPRLPKSDLLNPRWIRTTLQAVNYASLQSDHRLPSRAPPSL
Number of Associated Samples	62
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	80.39 %
% of genes near scaffold ends (potentially truncated)	20.59 %
% of genes from short scaffolds (< 2000 bps)	70.59 %
Associated GOLD sequencing projects	55
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.27

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (63.725 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil (37.255 % of family members)
Environment Ontology (ENVO)	Unclassified (36.275 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (74.510 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 42.74% β-sheet: 0.00% Coil/Unstructured: 57.26%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.27
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.27
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF13620	CarboxypepD_reg	33.33
PF01758	SBF	3.92
PF01171	ATP_bind_3	2.94
PF03949	Malic_M	2.94
PF01197	Ribosomal_L31	1.96
PF00171	Aldedh	0.98
PF00884	Sulfatase	0.98
PF07927	HicA_toxin	0.98
PF02702	KdpD	0.98
PF12704	MacB_PCD	0.98
PF00069	Pkinase	0.98
PF00999	Na_H_Exchanger	0.98
PF10282	Lactonase	0.98
PF07589	PEP-CTERM	0.98
PF05726	Pirin_C	0.98
PF13614	AAA_31	0.98
PF00005	ABC_tran	0.98
PF02195	ParBc	0.98
PF12728	HTH_17	0.98
PF14559	TPR_19	0.98
PF04342	DMT_6	0.98
PF03459	TOBE	0.98
PF01451	LMWPc	0.98
PF04542	Sigma70_r2	0.98
PF00534	Glycos_transf_1	0.98
PF13847	Methyltransf_31	0.98
PF00825	Ribonuclease_P	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.92
COG0037	tRNA(Ile)-lysidine synthase TilS/MesJ	Translation, ribosomal structure and biogenesis [J]	2.94
COG0281	Malic enzyme	Energy production and conversion [C]	2.94
COG0301	Adenylyl- and sulfurtransferase ThiI (thiamine and tRNA 4-thiouridine biosynthesis)	Translation, ribosomal structure and biogenesis [J]	2.94
COG1606	ATP-utilizing enzyme, PP-loop superfamily	General function prediction only [R]	2.94
COG0482	tRNA U34 2-thiouridine synthase MnmA/TrmU, contains the PP-loop ATPase domain	Translation, ribosomal structure and biogenesis [J]	2.94
COG0519	GMP synthase, PP-ATPase domain/subunit	Nucleotide transport and metabolism [F]	2.94
COG0603	7-cyano-7-deazaguanine synthase (queuosine biosynthesis)	Translation, ribosomal structure and biogenesis [J]	2.94
COG0686	Alanine dehydrogenase (includes sporulation protein SpoVN)	Amino acid transport and metabolism [E]	2.94
COG0254	Ribosomal protein L31	Translation, ribosomal structure and biogenesis [J]	1.96
COG1741	Redox-sensitive bicupin YhaK, pirin superfamily	General function prediction only [R]	0.98
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.98
COG2205	K+-sensing histidine kinase KdpD	Signal transduction mechanisms [T]	0.98
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	0.98
COG3169	Uncharacterized membrane protein, DMT/DUF486 family	Function unknown [S]	0.98
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	0.98
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.98
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	0.98
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.98
COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	General function prediction only [R]	0.98
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.98
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.98
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.98
COG0594	RNase P protein component	Translation, ribosomal structure and biogenesis [J]	0.98
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.98
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	0.98
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	63.73 %
Unclassified	root	N/A	36.27 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	63.73 %
Unclassified	root	N/A	36.27 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	63.73 %
Unclassified	root	N/A	36.27 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	39.22 %
Unclassified	root	N/A	36.27 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.27 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	11.76 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	10.78 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.27 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	11.76 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.78 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.27 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	11.76 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.78 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.27 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.78 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.98 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.27 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.78 %
unclassified Burkholderia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → unclassified Burkholderia	0.98 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.27 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.78 %
Burkholderia sp. D7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → unclassified Burkholderia → Burkholderia sp. D7	0.98 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003218\|JGI26339J46600_10004679	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4037	Open in IMG/M
3300003218\|JGI26339J46600_10012715	Not Available	2458	Open in IMG/M
3300003218\|JGI26339J46600_10073809	Not Available	870	Open in IMG/M
3300003218\|JGI26339J46600_10112498	Not Available	658	Open in IMG/M
3300003219\|JGI26341J46601_10075227	All Organisms → cellular organisms → Bacteria → Acidobacteria	1016	Open in IMG/M
3300003219\|JGI26341J46601_10084989	Not Available	940	Open in IMG/M
3300003368\|JGI26340J50214_10013264	All Organisms → cellular organisms → Bacteria → Acidobacteria	2592	Open in IMG/M
3300003368\|JGI26340J50214_10084776	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	826	Open in IMG/M
3300004080\|Ga0062385_10010530	All Organisms → cellular organisms → Bacteria → Acidobacteria	3138	Open in IMG/M
3300004080\|Ga0062385_10245264	Not Available	995	Open in IMG/M
3300004080\|Ga0062385_10316555	Not Available	901	Open in IMG/M
3300004080\|Ga0062385_10699545	Not Available	653	Open in IMG/M
3300004080\|Ga0062385_11187721	Not Available	521	Open in IMG/M
3300004092\|Ga0062389_100562174	Not Available	1299	Open in IMG/M
3300004152\|Ga0062386_100236355	All Organisms → cellular organisms → Bacteria → Acidobacteria	1445	Open in IMG/M
3300004152\|Ga0062386_100285302	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1314	Open in IMG/M
3300004152\|Ga0062386_100505247	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → unclassified Burkholderia → Burkholderia sp. D7	982	Open in IMG/M
3300004152\|Ga0062386_100514541	Not Available	973	Open in IMG/M
3300004152\|Ga0062386_100818371	Not Available	768	Open in IMG/M
3300004152\|Ga0062386_101102469	Not Available	659	Open in IMG/M
3300005332\|Ga0066388_105546019	Not Available	639	Open in IMG/M
3300006052\|Ga0075029_100511465	Not Available	794	Open in IMG/M
3300006055\|Ga0097691_1008535	All Organisms → cellular organisms → Bacteria → Acidobacteria	5306	Open in IMG/M
3300006642\|Ga0075521_10130676	Not Available	1169	Open in IMG/M
3300006795\|Ga0075520_1381584	Not Available	570	Open in IMG/M
3300009523\|Ga0116221_1408351	Not Available	591	Open in IMG/M
3300010339\|Ga0074046_10001938	All Organisms → cellular organisms → Bacteria	18247	Open in IMG/M
3300010339\|Ga0074046_10017494	All Organisms → cellular organisms → Bacteria	5104	Open in IMG/M
3300010339\|Ga0074046_10534345	Not Available	698	Open in IMG/M
3300010341\|Ga0074045_10005423	All Organisms → cellular organisms → Bacteria	11144	Open in IMG/M
3300010341\|Ga0074045_10685770	Not Available	651	Open in IMG/M
3300010341\|Ga0074045_10973355	Not Available	534	Open in IMG/M
3300010343\|Ga0074044_10541476	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	760	Open in IMG/M
3300010376\|Ga0126381_101120722	All Organisms → cellular organisms → Bacteria	1137	Open in IMG/M
3300010379\|Ga0136449_100117204	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5375	Open in IMG/M
3300010379\|Ga0136449_102431989	Not Available	754	Open in IMG/M
3300010379\|Ga0136449_102703521	Not Available	704	Open in IMG/M
3300014159\|Ga0181530_10645053	Not Available	515	Open in IMG/M
3300014164\|Ga0181532_10018439	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5130	Open in IMG/M
3300014164\|Ga0181532_10078577	All Organisms → cellular organisms → Bacteria	2097	Open in IMG/M
3300014165\|Ga0181523_10166709	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1288	Open in IMG/M
3300014169\|Ga0181531_10002758	All Organisms → cellular organisms → Bacteria	10877	Open in IMG/M
3300014200\|Ga0181526_10202052	All Organisms → cellular organisms → Bacteria → Acidobacteria	1271	Open in IMG/M
3300014495\|Ga0182015_10111002	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1893	Open in IMG/M
3300016341\|Ga0182035_10503962	Not Available	1034	Open in IMG/M
3300016371\|Ga0182034_12058870	Not Available	504	Open in IMG/M
3300017928\|Ga0187806_1131467	All Organisms → cellular organisms → Bacteria	817	Open in IMG/M
3300017943\|Ga0187819_10261546	All Organisms → cellular organisms → Bacteria	1011	Open in IMG/M
3300017955\|Ga0187817_10144679	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1510	Open in IMG/M
3300017955\|Ga0187817_10694047	Not Available	649	Open in IMG/M
3300017970\|Ga0187783_10002997	All Organisms → cellular organisms → Bacteria	12467	Open in IMG/M
3300017970\|Ga0187783_10293127	All Organisms → cellular organisms → Bacteria → Acidobacteria	1187	Open in IMG/M
3300017972\|Ga0187781_10249470	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1256	Open in IMG/M
3300018001\|Ga0187815_10180968	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	892	Open in IMG/M
3300019284\|Ga0187797_1148756	Not Available	693	Open in IMG/M
3300021477\|Ga0210398_10006638	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	10602	Open in IMG/M
3300022875\|Ga0224553_1056592	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	843	Open in IMG/M
3300024295\|Ga0224556_1000143	All Organisms → cellular organisms → Bacteria	15578	Open in IMG/M
3300025475\|Ga0208478_1024622	All Organisms → cellular organisms → Bacteria → Acidobacteria	1235	Open in IMG/M
3300025481\|Ga0208079_1019143	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2105	Open in IMG/M
3300025527\|Ga0208714_1100657	Not Available	571	Open in IMG/M
3300025650\|Ga0209385_1026259	All Organisms → cellular organisms → Bacteria → Acidobacteria	2302	Open in IMG/M
3300027680\|Ga0207826_1071431	Not Available	957	Open in IMG/M
3300027698\|Ga0209446_1039232	All Organisms → cellular organisms → Bacteria	1192	Open in IMG/M
3300027698\|Ga0209446_1040181	All Organisms → cellular organisms → Bacteria	1178	Open in IMG/M
3300027698\|Ga0209446_1083567	Not Available	817	Open in IMG/M
3300027812\|Ga0209656_10000787	All Organisms → cellular organisms → Bacteria	20533	Open in IMG/M
3300027812\|Ga0209656_10008748	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	6430	Open in IMG/M
3300027812\|Ga0209656_10011725	All Organisms → cellular organisms → Bacteria	5510	Open in IMG/M
3300027812\|Ga0209656_10014503	All Organisms → cellular organisms → Bacteria → Acidobacteria	4909	Open in IMG/M
3300027812\|Ga0209656_10094550	Not Available	1581	Open in IMG/M
3300027812\|Ga0209656_10106861	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1462	Open in IMG/M
3300027812\|Ga0209656_10167652	All Organisms → cellular organisms → Bacteria	1087	Open in IMG/M
3300027824\|Ga0209040_10008366	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7376	Open in IMG/M
3300027824\|Ga0209040_10018208	All Organisms → cellular organisms → Bacteria	4645	Open in IMG/M
3300027824\|Ga0209040_10024710	All Organisms → cellular organisms → Bacteria	3871	Open in IMG/M
3300027824\|Ga0209040_10025109	All Organisms → cellular organisms → Bacteria → Acidobacteria	3834	Open in IMG/M
3300027824\|Ga0209040_10550093	Not Available	502	Open in IMG/M
3300027825\|Ga0209039_10022578	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3171	Open in IMG/M
3300027825\|Ga0209039_10077748	All Organisms → cellular organisms → Bacteria	1455	Open in IMG/M
3300027825\|Ga0209039_10150070	Not Available	970	Open in IMG/M
3300028909\|Ga0302200_10440750	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	601	Open in IMG/M
3300029913\|Ga0311362_10250760	All Organisms → cellular organisms → Bacteria → Acidobacteria	1927	Open in IMG/M
3300030011\|Ga0302270_10269325	All Organisms → cellular organisms → Bacteria → Acidobacteria	950	Open in IMG/M
3300031235\|Ga0265330_10185316	Not Available	881	Open in IMG/M
3300031239\|Ga0265328_10108390	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1031	Open in IMG/M
3300031708\|Ga0310686_100253470	Not Available	1718	Open in IMG/M
3300031708\|Ga0310686_107247427	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1687	Open in IMG/M
3300031708\|Ga0310686_116218519	Not Available	701	Open in IMG/M
3300031711\|Ga0265314_10346038	Not Available	819	Open in IMG/M
3300032160\|Ga0311301_10044762	All Organisms → cellular organisms → Bacteria	10446	Open in IMG/M
3300032261\|Ga0306920_101491641	All Organisms → cellular organisms → Bacteria → Acidobacteria	966	Open in IMG/M
3300032770\|Ga0335085_10002129	All Organisms → cellular organisms → Bacteria	38180	Open in IMG/M
3300032770\|Ga0335085_10425037	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1536	Open in IMG/M
3300032783\|Ga0335079_10619008	All Organisms → cellular organisms → Bacteria → Acidobacteria	1140	Open in IMG/M
3300032805\|Ga0335078_10538281	All Organisms → cellular organisms → Bacteria	1490	Open in IMG/M
3300032828\|Ga0335080_10366729	All Organisms → cellular organisms → Bacteria → Acidobacteria	1551	Open in IMG/M
3300032893\|Ga0335069_10469555	All Organisms → cellular organisms → Bacteria → Acidobacteria	1465	Open in IMG/M
3300032898\|Ga0335072_10574781	All Organisms → cellular organisms → Bacteria	1142	Open in IMG/M
3300033158\|Ga0335077_10004496	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	17022	Open in IMG/M
3300033887\|Ga0334790_000042	All Organisms → cellular organisms → Bacteria	137545	Open in IMG/M
3300034125\|Ga0370484_0068147	All Organisms → cellular organisms → Bacteria	902	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.06%
Host-Associated	Host-Associated	2.94%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	49.02%
Terrestrial	Environmental → Terrestrial	48.04%
Plants	Host-Associated → Plants	2.94%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	48.04%
Soil	Environmental → Terrestrial → Soil	42.16%
Peat	Environmental → Terrestrial → Peat	5.88%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.94%
Sediment	Environmental → Aquatic → Sediment	0.98%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	48.04%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	20.59%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	19.61%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	5.88%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.94%
Loam	Environmental → Terrestrial → Soil → Loam	1.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	43.14%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	19.61%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	8.82%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	6.86%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	5.88%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	4.90%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.98%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.98%

Habitat	Taxonomy	Distribution
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	37.25%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	7.84%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	6.86%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	6.86%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	5.88%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	4.90%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.94%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.94%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	2.94%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	2.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	2.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.96%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.98%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.98%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.98%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003218	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1	Environmental	Open in IMG/M
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300003368	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006055	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012	Environmental	Open in IMG/M
3300006642	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D	Environmental	Open in IMG/M
3300006795	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300019284	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300022875	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 10-14	Environmental	Open in IMG/M
3300024295	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 1-5	Environmental	Open in IMG/M
3300025475	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-2 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025481	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025527	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025650	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B (SPAdes)	Environmental	Open in IMG/M
3300027680	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80 (SPAdes)	Environmental	Open in IMG/M
3300027698	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027825	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)	Environmental	Open in IMG/M
3300028909	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_1	Environmental	Open in IMG/M
3300029913	III_Bog_N3 coassembly	Environmental	Open in IMG/M
3300030011	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E2_3	Environmental	Open in IMG/M
3300031235	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG	Host-Associated	Open in IMG/M
3300031239	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG	Host-Associated	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031711	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG	Host-Associated	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033887	Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1	Environmental	Open in IMG/M
3300034125	Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_tus_01_15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI26339J46600_100046792	3300003218	Bog Forest Soil	MLLFVHVLLHPLVHTSVTSGAASSLVSVASSSTQSGSNLIAGDQCELCRVGHNTIVTPQLPKADLLNSRRILVALQAVNYASLQASRRLPSRAPPSL*
JGI26339J46600_100127154	3300003218	Bog Forest Soil	MLLFAHVLAHPVVHAIGASGAASSLACVSASSTQSANNLASGDQCELCRVGHNSIVTPLLPKTALLNPRWIRTALQAVNYASLRXGRGTPSRAPPSL*
JGI26339J46600_100738092	3300003218	Bog Forest Soil	MLLFVHVLVHPLVHAIGASGAASSLASVSASSTLSGNNLASGDQCELCRVGHNTIVSPQLPKTALLNPRWIRIALQAVNYASLHAGRGTPSRAPPSL*
JGI26339J46600_101124981	3300003218	Bog Forest Soil	MLLFVHVLVHPLVHAIGASGAASSLASVSASSTQPGNSLASGDQCELCRVGHNTIVTPQLPKTALLNPRWIRTALQAVNYASLHAGRGTPSRAPPSL*
JGI26341J46601_100752271	3300003219	Bog Forest Soil	FVHVLLHPLVHAVGTSGASTSPAVSASSAQLDGNLNAGDQCELCRVGHNTIVTPRLPKSDLLNPRWIRTTLRAINYSSLQGAQRLPSRAPPSL*
JGI26341J46601_100849892	3300003219	Bog Forest Soil	MLLFLHVLLHPLVHAAGTSGAAESRLAVSTSTTQSDANLNSGDQCELCRVGHNTIVTPPLPKSDLLNPRWIRTTLQAVNYASLQADHRLPSRAPPSL*
JGI26340J50214_100132642	3300003368	Bog Forest Soil	MLLFVHVLLHPLVHVAGTSAPAHLAVSTSSTQLDGSLNSGDQCELCRVGHRTIVTPQLPMSERLNPRWIRTTLQAVNYASLQADQRLPSRAPPSL*
JGI26340J50214_100847761	3300003368	Bog Forest Soil	MLLFVHVLLHPLVHAVGTSGASTSPAVSASSAQLDGNLNAGDQCELCRVGHNTIVTPRLPKSDLLNPRWIRTTLRAINYSSLQGAQRLPSRAPPSL*
Ga0062385_100105301	3300004080	Bog Forest Soil	MLLFVHVLLHPLVHAVGASGAATSLAVSTSSAQSDGNLNAGDQCELCRVGHNTIATPRLPQSDLLNPRWIRTTLQAVNYASLQSDHRIPSRAPPSL*
Ga0062385_102452642	3300004080	Bog Forest Soil	MMLLFVHVLLHPLVHAVGASAISPLAASASSTQSHASLNAGDQCELCRVGHNTIVTPRLPKSDLLNPPWIRTTLQAVNYASLHAVHRIPSRAPPGL*
Ga0062385_103165551	3300004080	Bog Forest Soil	MLLFVHVLVHPLVHVIGASGAASGLASISSSSTQSANNLASGDQCELCRVGHNSIVTSQLPKTALLNPRWIRTALQAVNYASLHAGRGTPSRAPPSL*
Ga0062385_106995451	3300004080	Bog Forest Soil	MLLFVHVLLHPLVHAMGTSGPDHLAVSTSSAPSDASLNGGDQCELCRVGHNTIVTPQLPQSDLLNPKWIRTTLLAVNYASLQAGQRLPSRAPPSL*
Ga0062385_111877211	3300004080	Bog Forest Soil	AVGTSGAADRLAVSASSTQSDAGLNAGDQCELCRVGHNSIVTPELPKSDLLNPRWIRTTLQAVNYASLQAGHRLPSRAPPTL*
Ga0062389_1005621741	3300004092	Bog Forest Soil	MLLFVHVLLHPLVHAIGTSDTASLSHSASSKQSDANLNAGDQCELCRVGHSTIVTPQLQKSELLNPRWIRTLLQAVNYASLHTDRRIPSRAPPSL*
Ga0062386_1002363551	3300004152	Bog Forest Soil	PVKFRGWLLMLLFVHVLLHPLVHASGTSGAAKGLVSVSSSSTPSDSALIAGDQCELCRAGHNTIVTPQLPTADLLNPRRIRVALQAVNYASLQASLRLPSRAPPSL*
Ga0062386_1002853022	3300004152	Bog Forest Soil	MLLFVHVLLHPLVHAVGTSGAADHLTVSTSSMHSDANLNAGDQCELCRVGHNTIVAPGLPKSELLNPRWIRTTLQAVNYASLQSDHRLPSRAPPSL*
Ga0062386_1005052472	3300004152	Bog Forest Soil	MLLFVHVLLHPLVHVAGTSGASHLAISGAATQSDASLNAGDQCELCRVGRSTIVTPQLPMGEMLNPRWIRTTLHAVNYASLQADHRLPSRAPPSL*
Ga0062386_1005145411	3300004152	Bog Forest Soil	MLLFVHVLLHPLVHVVGTPGGASSLAVSASAAQSDANLNAGDQCELCRVGHNTIVTPQLPKSDLLNPRRIRTRLNAVNYASLQADQRLPSRAPPSL*
Ga0062386_1008183711	3300004152	Bog Forest Soil	MLLFVHVLVHPLVHAVGASGAASSLASVSAGSTQSDDNLASGDQCELCRVGHTTIVTPRLPQSDLLNPRWIRTALQAVNYASLQAEHRLPSRAPPSI*
Ga0062386_1011024691	3300004152	Bog Forest Soil	MLLFVHVLVHPLVHAIGASGAASSLTSVSASSTQSYDNLASGDQCELCRVGHNQIVTPQLPKIALLNPRWIRTALQAVNYASLQASRALPSRAPPSL*
Ga0066388_1055460192	3300005332	Tropical Forest Soil	HPLVHVAGPSGATNLAVSTSSTASNISLSSADQCELCRVGHNTLVTPKLPRAELLNPRWIRTTLHAVNYASLHTDRAIPSRAPPSL*
Ga0075029_1005114651	3300006052	Watersheds	MLLFVHVLLHPLVHAVGTSGAASNIAVSASSTQPDASLNSGDQCELCRVGHNTVVTPRLPQSDLLNPRWIRTALQTVNYASLQAGHRLPSRAPPSL*
Ga0097691_10085352	3300006055	Arctic Peat Soil	MLLFVHVLLHPLVHVIGTSGAASDLARVSASSTQPNSSLATGDQCELCRVGHNTIVTPQLPQADLLNPRWIRVALQAVNYASLQADHRTPSRAPPSL*
Ga0075521_101306762	3300006642	Arctic Peat Soil	MISKSGPSEEFREVSRMALTLLFVHVLLHPLVHMIGTSGAANDLARATASSTQPDSSLATGDHCELCRVGHNTIITPQLLQADLLNPRWIRVALQAVNYASLQADYRLPARAPPSL*
Ga0075520_13815842	3300006795	Arctic Peat Soil	GAANNLVSVSSSLTQSGSGLIAGDQCELCRVGHNTIVTPQLPQANLLNPRWIRVALQAVNYASLQAGHRTPSRAPPSL*
Ga0116221_14083512	3300009523	Peatlands Soil	ARLYVRIMTANRALARNSVKFRGWLLTLLFVHVLLHPLVHMIGTSGAANDLARVTASSTQSDSSLATGDQCELCRVGHNTIVTPQLPQADLLNPLWIRVALQAVNYASLQAGYRLPSRAPPSL*
Ga0074046_100019389	3300010339	Bog Forest Soil	MLLFVHVLLHPLVHAVGASGAATSLAVSTSSAQSDGNLNAGDQCELCRVGHNTIVTPRLPKSDLLNPRWIRTTLQAVNYASLQSDHRLPSRAPPSL*
Ga0074046_100174942	3300010339	Bog Forest Soil	MLLFVHVLVHPLVHAIGSSGAASSLASVSASSTQSDYNLASGDQCELCRVGHNTIVTPQLPKTALLNPRWIRTALQAVNYASLQASRAIPSRAPPSL*
Ga0074046_105343451	3300010339	Bog Forest Soil	VLIRLSGSNEESVKLRGWLLMLLFLHVLLHPLVHAAGTSGAAESRLAVSTSTTQSDANLNSGDQCELCRVGHNTIVTPPLPKSDLLNPRWIRTTLQAVNYASLQADHRLPSRAPPSL*
Ga0074045_100054239	3300010341	Bog Forest Soil	MLLFVHVLLHPLVHAIGTSDTASLSHSASSKQSDANLNAGDRCELCRVGHSTIVTPQLPKSELLNPRCIRTLLQAVNYASLHTDRRIPSRAPPSL*
Ga0074045_106857701	3300010341	Bog Forest Soil	MLLFVHVLLHPLVHAVGTSAPDRLAVSTSSTQSDASPNGGDQCELCRVGHRTIVTPQLPVSEMLNPGWIRTTLQAVNYASLQADQRLPSRAPPSL*
Ga0074045_109733552	3300010341	Bog Forest Soil	MLLFVHVLLHPLVHAVGTSAANGCAISSTSTQSDTSLNSGDRCELCRVGHSSIVTPQLPKTALLNPRWIRTTLQAVNYESLQAGHRLPSRAPPSL*
Ga0074044_105414762	3300010343	Bog Forest Soil	MLLFVHVLLHPLVHAVGTSGAANRLAVSASSTQSDAGLNAGDQCELCRVGHNSIVTPELPKSDLLNPRWIRTTLQAVNYASLQAGHRLPSRAPPTL*
Ga0126381_1011207222	3300010376	Tropical Forest Soil	VKFRGWLLLLLFVHVLLHPLVHVAGPSGATNLAVSTSSTASNISLSSADQCELCRVGHNTLVTPKLPRAELLNPRWIRTTLHAVNYASLHTDRAIPSRAPPSL*
Ga0136449_1001172042	3300010379	Peatlands Soil	MRIGLIPTYGPSEESVKFRGWLLMLLFVHVLLHPLVHAIGTSDTASLSHSASSKQSDANLNAADQCELCRVGHSTIVTPQLPKSELLNPRCIRTLLQAVNYASLHTDRRIPSRAPPSL*
Ga0136449_1024319891	3300010379	Peatlands Soil	LSSILAAVRNPVKFRGWLLLLLFVHVLVHPLVHAIGTSGAASNLASVSASPTQSGNSLASGDQCELCRVGHNQIVTPQLPKTALLNPRWIRTALQAVNYASLQASLALPSRAPPSL*
Ga0136449_1027035212	3300010379	Peatlands Soil	MLLFVHVLLHPLVHVIGTSGAANDLARVASNSAQFDSNLTTSDQCGLCRVGHNTIVTPQLPQSDLLNPRWIRIALQAVNYASLQADYRLPSRAPPSL*
Ga0181530_106450531	3300014159	Bog	VLVHPLVHAIGASGAASSLASVSASSTQSGDNLASGDQCELCRVGHNQIVSPQLPKTALLNPRWIRTALQAVNYASLQVSPAIPSRAPPSL*
Ga0181532_100184391	3300014164	Bog	MLVFVHVMLHPWVHAMGTARTADSLASVSATSTLSGDITSSDQCELCRVGHNATVTPRLPKTDLLNPRWIRTTLQAVNYASLQAGRCLPSRAPPSL*
Ga0181532_100785772	3300014164	Bog	MLLFVHVLLHPLVHAVGTSAPDRLAISTSSAQLDGSLNSGDQCELCRVGHRSIVTPQLPMSEMLNPRWIRTTLQAVNYASLQADHRLPSRAPPSL*
Ga0181523_101667092	3300014165	Bog	MLVFVHVMLHPWVHAMGTAGTASSLASVSATSTLSGDITSSDQCELCRVGHNATVTPRLPKTDLLNPRWIRTTLQAVNYASLQADRNLPSRAPPSL*
Ga0181531_100027589	3300014169	Bog	LKLRAWLFLLLFAHVLLHPWVHAMGTATPASASPVISSSFTPSEGSLISGDECELCRVGHNATVTPQLPKTALLNPRWIRTTLQAVNYASLQSDLRLPSRAPPTL*
Ga0181526_102020521	3300014200	Bog	MLVFVHVMLHPWVHAMGTARTADSLASVSATSTLSGDITSSDQCELCRVGHNATVTPRLPKTDLLNPRWIRTTLQAVNYASLQADRNLPSRAPPSL*
Ga0182015_101110021	3300014495	Palsa	VKIRGWLLMLVFVHVMLHPWVHAMGTARTAGSLASVSATSTHSGDLTSSDQCELCRVGHNATVTPQLPKTDLLNPRWIRTTLQAVNYASLQANRSLPSRAPPSL*
Ga0182035_105039622	3300016341	Soil	MLLFVHVLLHPLVHAACTSGAASDLARVTASSTQANDSLAAGDQCELCRVGHNTIVTPQLPQADLLNPRWIRVTLQAVNYASLQGDQRIPSRAPPSL
Ga0182034_120588701	3300016371	Soil	VKLRAWLLMLLFVHVLLHPLVHAVGTSGAADHLAMSTSSMHSDANLNAGDQCELCRVGHNTNVTPGLPKSELLNPGWIPTALQAVNYASLHSDHRLPSRAPPSL
Ga0187806_11314671	3300017928	Freshwater Sediment	MLLFVHVLLHPLVHAMGTSAPDHLAFSTSSTQSDASLNGGDQCELCRVGHSAIVTPKLPQSDLLNPRWVRTTLHAVNYASLQAEHRLPSRAPPSL
Ga0187819_102615461	3300017943	Freshwater Sediment	MLSPGSNEERVKFRGWLLMLLFVHVLLHPLVHVAGTSRAANNFAVSDCSAAQDASLNADHQCELCRVGHNTIVTPQLPQTDLWNPRWIRTALQAVNYASLQADQKLPSRAPPSL
Ga0187817_101446792	3300017955	Freshwater Sediment	MFRGWLLMLLFVHVLLHPLVHVAGTSRAANNFAVSDCSAAQDASLNADHQCELCRVGHNTIVTPQLPQTDLLNPRWIRTALQAVNYASLQADQKLPSRAPPSL
Ga0187817_106940471	3300017955	Freshwater Sediment	MVLFVHVLLHPLVHAMGTSAPDHLAFSTSSTQSDASLNGGDQCELCRVGHRSIVTPQLPMSEMLNPRWIRTTLQAVNYASLQADHRLPSRAPPSL
Ga0187783_100029979	3300017970	Tropical Peatland	MLLFAHVLVHPLVHLTSAAAAPSSSAVAARSALSDSGVNSADQCELCRVGHNAVVTPQLPKTDLLNPRWIRTALQALNYASLQASRSIPSRAPPSL
Ga0187783_102931272	3300017970	Tropical Peatland	VKFRGWLLLLLFVHVLLHPLVHVAGLSGTPNSTAVCAPPAGADASLNSADQCELCRVGQNTIFTPQLPKADLLNPRWIRTALQEANYASLHADRAISSRAPPIL
Ga0187781_102494701	3300017972	Tropical Peatland	MLLCVHVLLHPLVHAMSTSEMASPSFSAGAAQSDASQNAGDQCELCRVGHSTIVTPQLPKKELLNPRWIRTALQAVNYASLHTDRRIPSRAPPSF
Ga0187815_101809682	3300018001	Freshwater Sediment	MLSPGSNEERVKFRGWLLMLLFVHVLLHPLVHVAGTSRAANNFAVSDCSAAQDASLNADHQCELCRVGHNTIVTPQLPQTDLLNPRWIRTALQAVNYASLQADQKLPSRAPPSL
Ga0187797_11487562	3300019284	Peatland	VKFRGWLLLLLFAHVLLHPLVHLPGASGAASNFATSDSSAAQDAGLNSADQCELCRVGHNSIVTPQLPRTDLLNPRWIRTTLQAVNYDSLHADRRIPSRAPPSL
Ga0210398_1000663813	3300021477	Soil	MLVFVHVLLHPWVHAMGTAKTASSVACASATATQSGELTSSDQCELCRVGHNAAVTPRLPKTDLLNPRWIRTTLQAVNYASLQADRSLPSRAPPSL
Ga0224553_10565921	3300022875	Soil	MLVFVHVMLHPWVHAMGTARTASRLASISTSSTQSDSLASSDQCELCRVGHNATVTPRLPKTDLLNPRWIRTTLQAVNYASLQADRSLPSRA
Ga0224556_100014316	3300024295	Soil	LKLRAWLFLLLFAHVLLHPWVHAMGTATPASASPVISSSFTPSEGSLISGDECELCRVGHNATVTPQLPKTALLNPRWIRTTLQAVNYASLQSDLRLPSRAPPTL
Ga0208478_10246222	3300025475	Arctic Peat Soil	MLLFVHVLLHPLVHVIGTSGAASDLARVSASSTQPNSSLATGDQCELCRVGHNTIVTPQLPQADLLNPRWIRVALQAVNYASLQADHRTPSRAPPSL
Ga0208079_10191432	3300025481	Arctic Peat Soil	MKFRGWLLMLLFVHVLLHPLVHAIGTSGAASDLARVSASSTQPNSRLAAGDQCELCRVGHNPIISPQLPQANLLNPGWIQVALQAVNCASLQADHRIPSRAPPSL
Ga0208714_11006571	3300025527	Arctic Peat Soil	MLLFVHVLLHPLVHAIGTLGAANNLVSVSSSLTQSGSGLIAGDQCELCRVGHNTIVTPQLPQANLLNPRWIRVALQAVNCASLQADHRIPSRAPPSL
Ga0209385_10262593	3300025650	Arctic Peat Soil	MLLFVHVLLHPLVHVIGTSGAASDLARVSASSTQPNSSLAAGDQCELCRVGHTTIVTPQLPQADLLNPRWIRVALQAVNYGSLQADHRIPSRAPPSL
Ga0207826_10714312	3300027680	Tropical Forest Soil	MLLFVHVLLHPLVHAVGTSGAANRLTVSSSSTQSNASLNAGDQCELCRVGHNSIVTPKLPKSDLLNPRWMRSTLQAVNYASLQADHRLPSRAPPSL
Ga0209446_10392322	3300027698	Bog Forest Soil	MLLFVHVLLHPLVHAMGTSGPDHLAVSTSSAPSDASLNGGDQCELCRVGHNTIVTPQLPQSDLLNPKWIRTTLLAVNYASLQAGQRLPSRAPPSL
Ga0209446_10401812	3300027698	Bog Forest Soil	MLLFVHVLLHPLVHAVGASGAATSLAVSTSSAQSDGNLNAGDQCELCRVGHNTIATPRLPQSDLLNPRWIRTTLQAVNYASLQSDHRIPSRAPPSL
Ga0209446_10835671	3300027698	Bog Forest Soil	MLLFVHVLLHPLVHAIGTSDTASLSHSASSKQSDANLNAGDQCELCRVGHSTIVTPQLQKSELLNPRWIRTLLQAVNYASLHTDRRIPSRA
Ga0209656_1000078717	3300027812	Bog Forest Soil	MLLFVHVLLHPLVHAVGTSGASTSPAVSASSAQLDGNLNAGDQCELCRVGHNTIVTPRLPKSDLLNPRWIRTTLRAINYSSLQGAQRLPSRAPPSL
Ga0209656_100087484	3300027812	Bog Forest Soil	VKLRGWLLLLLFVHVLLHPLVHAIGTSAANSLAISGSSTQSSSVLNSGDQCELCRVGHNTIVSPQLPKSALLNPRWIRTTLQAVNYASLRAGQRIPSRAPPSL
Ga0209656_100117252	3300027812	Bog Forest Soil	MLLFVHVLLHPLVHVAGTSAPAHLAVSTSSTQLDGSLNSGDQCELCRVGHRTIVTPQLPMSERLNPRWIRTTLQAVNYASLQADQRLPSRAPPSL
Ga0209656_100145033	3300027812	Bog Forest Soil	MLLFLHVLLHPLVHAAGTSGAAESRLAVSTSTTQSDANLNSGDQCELCRVGHNTIVTPPLPKSDLLNPRWIRTTLQAVNYASLQADHRLPSRAPPSL
Ga0209656_100945501	3300027812	Bog Forest Soil	MLLFVHVLVHPLVHAIGSSGAASSLASVSASSTQSDYNLASGDQCELCRVGHNTIVTPQLPKTALLNPRWIRTALQAVNYASLQASRAIPSRAPPSL
Ga0209656_101068612	3300027812	Bog Forest Soil	MLLFVHVLVHPLVHAIGASGAASSLTSVSASSTQSYDNLASGDQCELCRVGHNQIVTPQLPKIALLNPRWIRTALQAVNYASLQASRALPSRAPPSL
Ga0209656_101676522	3300027812	Bog Forest Soil	LLLLFVHVLLHPLVHAVGTAAPDRLAISTSSAQLDGSLNAGDQCELCRVGHRTIVAPQVPMSEMLNPRWIRTTLQAVNYESLQADHRLPSRAPPSL
Ga0209040_100083662	3300027824	Bog Forest Soil	MLLFVHVLVHPLVHAIGASGAASSLVSVSTRSTQSYDNLAAGDQCELCRVGHNQIVTPQLPKTALLNPRWIQTALQAVNYASLQASRAIPSRAPPSL
Ga0209040_100182083	3300027824	Bog Forest Soil	LLLLLFVHVLLHPLVHAIGTSAANSLAISGSSTQSSSVLNSGDQCELCRVGHNTIVSPQLPKSALLNPRWIRTTLQAVNYASLRAGQRIPSRAPPSL
Ga0209040_100247103	3300027824	Bog Forest Soil	MLLFAHVLAHPVVHAIGASGAASSLACVSASSTQSANNLASGDQCELCRVGHNSIVTPLLPKTALLNPRWIRTALQAVNYASLRVGRGTPSRAPPSL
Ga0209040_100251093	3300027824	Bog Forest Soil	VKLRGWLLLLLFVHVLLHPLVHAIGTSAANSLAVSASSTQSDASPNSGDQCELCRVGHNTIVTPQLPKSDLLNPRWIRTTLQAVNYASLQAGHRIPCRAPPSL
Ga0209040_105500931	3300027824	Bog Forest Soil	MLLFVHVLVHPLVHAVGASGAASSLASVSAGSTQSDDNLASGDQCELCRVGHTTIVTPRLPQSDLLNPRWIRTALQAVN
Ga0209039_100225783	3300027825	Bog Forest Soil	MLLFVHVLLHPLVHTSVTSGAASSLVSVASSSTQSGSNLIAGDQCELCRVGHNTIVTPQLPKADLLNSRRILVALQAVNYASLQASRRLPSRAPPSL
Ga0209039_100777482	3300027825	Bog Forest Soil	MLLFVHVLLHPLVHAAGTSGVAKSAAVSSSSTQLDANLNSGDQCELCRVGHNTIVTPRLPKSDLLNPRWIRTTLQAVNYASLQSDHKLPPRAPPSL
Ga0209039_101500702	3300027825	Bog Forest Soil	MLLFVHVLLHPLVHAVGASGAATSLAVSTSSAQSDGNLNAGDQCELCRVGHNTIVTPRLPKSDLLNPRWIRTTLQAVNYASLQ
Ga0302200_104407501	3300028909	Bog	MLVFVHVMLHPWVHAMGTARTASRLASISTSSTQSDSLASSDQCELCRVGHNATVTPRLPKTDLLNPRWIRTTLQAVNYAS
Ga0311362_102507603	3300029913	Bog	MLVFVHVMLHPWVHAMGTARTASRLASISTSSTQSDSLASSDQCELCRVGHNATVTPRLPKTDLLNPRWIRTTLQAVNYASLQPDRSLPSRAPPSL
Ga0302270_102693252	3300030011	Bog	CVKLRGWLLMLVFVHVMLHPWVHAMGTARTASRLASISTSSTQSDSLASSDQCELCRVGHNATVTPRLPKTDLLNPRWIRTTLQAVNYASLQPDRSLPSRAPPSL
Ga0265330_101853162	3300031235	Rhizosphere	MLLFVHVLLHPLVHAMGTTGAASSLASVSSSTRSDNGLISGDQCELCRVGHNTIVTPQLPLTDLLNPRWIRTALQAVNYASLYSGRRTPSRAPPSL
Ga0265328_101083901	3300031239	Rhizosphere	NPVKFRGWLLMLLFVHVLLHPLVHAMGTTGAASSLASVSSSTRSDNGLISGDQCELCRVGHNTIVTPQLPLTDLLNPRWIRTALQAVNYASLYSGRRTPSRAPPSL
Ga0310686_1002534704	3300031708	Soil	MLVFVHVLLHPWVHAMGTAKTASSVASVSATSTQTGELTSSDQCELCRVGHNAAVTPRLPKTDLLNPRWVRTVLQAVNYASLQADR
Ga0310686_1072474272	3300031708	Soil	VKLRGWLLMLVFVHVLLHPWVHAMGMAKTANSLASVSATSTQTGELTSSDQCELCRVGHNAAVTPRLPKTDLLNPRWIRTVLQAVNYASLQADRSLPSRAPPSL
Ga0310686_1162185191	3300031708	Soil	MLLFVHVLLHPLVHVIGTSGATNDLARITANSTQFDSNLTTSDQCGLCRVAHNTIVSPQLPQADLLNPRWIRVALQAVNYASLQAGYRLPSRAPPSL
Ga0265314_103460381	3300031711	Rhizosphere	MLLFVHVLLHPLVHAMGTTGAASSLASVSSSTRSDNGLISGDQCELCRVGHNTIVTPQLPLTDLLNPRWIRTALQAVNYASL
Ga0311301_100447627	3300032160	Peatlands Soil	MRIGLIPTYGPSEESVKFRGWLLMLLFVHVLLHPLVHAIGTSDTASLSHSASSKQSDANLNAADQCELCRVGHSTIVTPQLPKSELLNPRCIRTLLQAVNYASLHTDRRIPSRAPPSL
Ga0306920_1014916411	3300032261	Soil	LRAWLLMLLFVHVLLHPLVHAVGTSGAADHLAMSTSSMHSDANLNAGDQCELCRVGHNTNVTPGLPKSELLNPGWIPTALQAVNYASLHSDHRLPSRAPPSL
Ga0335085_1000212912	3300032770	Soil	MLLFVHVLLHPLVHLAGTTGTASSLAVSAGSTALDANLNSGDQCELCRVGHNTIVTPELPKSELLNPKWIRTTLQAVNYASLHAGHRIPSRAPPSL
Ga0335085_104250372	3300032770	Soil	MLLFVHVLLHPLVHVMRTSGAANDLARVSASSTQSDRSLTVGDQCELCRVGHNTIITPQLPQADLLNPRRILVALQAVNYASLQADQRIPSRAPPSL
Ga0335079_106190081	3300032783	Soil	MLLFAHVLLHPLVHAAGTSGAPGSLTVSTDSTGSDASLASADQCEMCRVGHSSILTPQLPKTDLLNPRWIRTTLQAVNYASLQADQRLPSRAPPSL
Ga0335078_105382812	3300032805	Soil	LGKPRYGRSEEPVKHRGWLLILLFAHVLLHPLVHAAGTSGAPGSLTVSTDSTGSDASLASADQCEMCRVGHSSILTPQLPKTDLLNPRWIRTTLQAVNYASLQADQRLPSRAPPSL
Ga0335080_103667292	3300032828	Soil	MLLFVHVLLHPLVHVAGASGASSLTVSGTATQSDTSLNAADQCELCRVGHSTIVTPGLPMSEMLNPSWIRISLQAVNYASLQADHRLPSRAPPSL
Ga0335069_104695552	3300032893	Soil	LILLFVHVLLHPLVHTVGVSAAANQAVISGPAAPADAALNGGDQCELCRVGHNSVATPQLPQSELLNPRWVVTALHAVNYASLQADHRLPSRAPPSL
Ga0335072_105747812	3300032898	Soil	MLVFVHVLLHPWVHAMGTAKTAGNLAAVCTTATPSSDLSSSDQCELCRVGHNATVTPKLPKTDLLNPRWIRTALQAVNYASLQADRSLPSRAPPAV
Ga0335077_100044962	3300033158	Soil	MLLFVHVLLHPLVHVAGPSTAANKHAISTRSTVADTSLNSADQCELCRVGHNSIVTPQLPQTDLLNPRWIRTTLQAVNYASLQADQRLPSRAPPSL
Ga0334790_000042_73538_73831	3300033887	Soil	MFLFVHVLLHPLVHVIGTSGAASDLARVTASSTQTDSSLAAGDRCELCRVGHNTIVTPQLPQADLLNPRWIRVALQAVNYASLQADHRTPSRAPPSL
Ga0370484_0068147_224_517	3300034125	Untreated Peat Soil	MLLFVHVLLHPLVHAMGTSGAASSLVSVSSSSTQSGSGLIAGDQCELCRVGHNPIITPQLPQANLLNPRWIRVALQAVNYASLQADHKIPSRAPPSL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101014

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences