NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F100979

Metagenome Family F100979

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F100979
Family Type Metagenome
Number of Sequences 102
Average Sequence Length 42 residues
Representative Sequence MIKFAILKALSFSSVLVLLLIVALSPLYVTMGLMTRQMHEKVN
Number of Associated Samples 66
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 7.84 %
% of genes near scaffold ends (potentially truncated) 34.31 %
% of genes from short scaffolds (< 2000 bps) 64.71 %
Associated GOLD sequencing projects 57
AlphaFold2 3D model prediction Yes
3D model pTM-score0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (37.255 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine
(46.078 % of family members)
Environment Ontology (ENVO) Unclassified
(93.137 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(95.098 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62
1KVRMV2_1004385154
2KVWGV2_101949711
3JGI25127J35165_10032653
4JGI25127J35165_10327931
5JGI25128J35275_10016843
6Ga0051126_106602
7Ga0068513_10137883
8Ga0075462_100064406
9Ga0075462_100467714
10Ga0075462_101525143
11Ga0098038_12699302
12Ga0098042_10076313
13Ga0070750_100827283
14Ga0070746_100455813
15Ga0098041_10605302
16Ga0115012_102154492
17Ga0137784_10128294
18Ga0137784_12077724
19Ga0114934_100877752
20Ga0160422_101495416
21Ga0160422_101582604
22Ga0160423_100153367
23Ga0160423_101566244
24Ga0160423_101628771
25Ga0160423_101687491
26Ga0160423_103064853
27Ga0160423_103157613
28Ga0160423_107880593
29Ga0163110_109007793
30Ga0163180_1000178127
31Ga0163179_101622102
32Ga0163111_121383332
33Ga0181426_10086483
34Ga0181433_11448923
35Ga0181407_10563322
36Ga0187220_10381603
37Ga0181425_10349922
38Ga0211584_100010014
39Ga0211484_100016033
40Ga0211483_100029645
41Ga0211483_101532661
42Ga0211621_10031409
43Ga0211490_10509122
44Ga0211527_101302681
45Ga0211498_100031908
46Ga0211596_101353333
47Ga0211618_101632513
48Ga0211497_102641341
49Ga0211583_102161593
50Ga0211617_100103614
51Ga0211617_100157114
52Ga0211499_101390933
53Ga0211472_102230733
54Ga0211699_102167663
55Ga0211699_103217362
56Ga0211528_103833143
57Ga0211557_101177534
58Ga0211557_101648612
59Ga0211620_100059494
60Ga0211620_102625212
61Ga0211620_103606253
62Ga0211556_102082443
63Ga0211708_100142061
64Ga0211708_100365511
65Ga0211708_101942593
66Ga0211708_104505533
67Ga0211539_100713001
68Ga0211539_101717381
69Ga0211559_100011232
70Ga0211473_100629814
71Ga0211473_102335931
72Ga0211543_100013294
73Ga0211614_100097501
74Ga0212024_10375451
75Ga0224902_1000774
76Ga0224906_10116187
77Ga0224906_11210413
78Ga0208159_10063938
79Ga0208159_10398403
80Ga0209348_100056112
81Ga0209348_10029062
82Ga0209232_10123163
83Ga0209232_10483781
84Ga0209232_11613002
85Ga0209645_11095643
86Ga0208899_10016506
87Ga0208899_11139363
88Ga0135227_10048213
89Ga0135227_10276991
90Ga0135226_10178734
91Ga0183683_10090946
92Ga0185543_10052101
93Ga0183748_10012854
94Ga0183748_10045358
95Ga0183748_10093491
96Ga0183748_10122737
97Ga0183826_10063371
98Ga0183826_10093261
99Ga0183826_10170211
100Ga0183826_10173962
101Ga0183826_10391161
102Ga0315331_1000531911
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 57.75%    β-sheet: 0.00%    Coil/Unstructured: 42.25%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

510152025303540MIKFAILKALSFSSVLVLLLIVALSPLYVTMGLMTRQMHEKVNExtracel.Cytopl.Sequenceα-helicesβ-strandsCoilSS Conf. scoreTM segmentsTopol. domains
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer

WebGL does not seem to be available.

This can be caused by an outdated browser, graphics card driver issue, or bad weather. Sometimes, just restarting the browser helps. Also, make sure hardware acceleration is enabled in your browser.

For a list of supported browsers, refer to http://caniuse.com/#feat=webgl.

Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.52
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
unclassified Hyphomonas
Unclassified
60.8%37.3%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Marine
Seawater
Marine Water
Marine
Surface Seawater
Seawater
Aqueous
Seawater
Marine
Marine Sediment
Seawater
Marine Harbor
Deep Subsurface
Coral
14.7%8.8%7.8%46.1%7.8%2.9%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
KVRMV2_10043851543300002231Marine SedimentFLKTLSFTSVLVLLLIVALSPLYVTMAIMTRQMAPKVD*
KVWGV2_1019497113300002242Marine SedimentMIKFAILKALSFTSVLVLLLIVALSPLYVTMAIMTRQMAP
JGI25127J35165_100326533300002482MarineMIKFAILRALSFSSVLVLLLIVALSPLYVTMGIMTRQMQEKMQEKIN*
JGI25127J35165_103279313300002482MarineIKFAILKALSFSSVLVLLLIVALSPLYVTMGIMTRQMQEKIN*
JGI25128J35275_100168433300002488MarineMVKFAILKALSFSSVLVLLLIVALSPLYVTMGIMTRQLNEKVN*
Ga0051126_1066023300003075CoralMVKLAILKALSFSSVLVLLLIVALSPLYVTMGLMTRQMQEKTN*
Ga0068513_101378833300004951Marine WaterMIKFAILKALSFTSVLVLLLIVALTPLYVTMGIMSRQMTQQKIVD*
Ga0075462_1000644063300006027AqueousMIKFAILKALSFTSVLVLLLIVALSPLYVTMGIMTRQLNEKVN*
Ga0075462_1004677143300006027AqueousMIKFAILKALSFTSVLVLLLIVALSPLYVTMGLMTRQLNEKVN*
Ga0075462_1015251433300006027AqueousMIKFAILKALSFSSVLVLLLIVALSPLYVTMGIMTRQMHEKVN*
Ga0098038_126993023300006735MarineMVKFAILKALSLSSVLVLLLIVAISPLYVTMGIMTRQMQETKN*
Ga0098042_100763133300006749MarineMIKFAILKALSFSSVLVLLLIVALSPLYVTMGIMTRQMQEKVD*
Ga0070750_1008272833300006916AqueousKFAILKALSFSSVLVLLLIVALSPLYVTMGIMTRQMHEKVN*
Ga0070746_1004558133300006919AqueousMIKFAILKALSFSSVLVLLLIVALSPLYVTMGLMTRQMQEKIN*
Ga0098041_106053023300006928MarineMIKFVILKALSFSSVLVLLLILALSPLYITMGIMTRQMQEKVN*
Ga0115012_1021544923300009790MarineMMKVVVAKAAAFTSLIVLLLIVTLSPLYVTMGLMTRQIHEKIN*
Ga0137784_101282943300010936MarineMIKFAILKALSFSSVLVLLLIVALSPLYVTMGLMTRQMQDKVN*
Ga0137784_120777243300010936MarineMIKFAILKALSFSSVLVLLLIVALSPLYVTMGLMTRQMQE*
Ga0114934_1008777523300011013Deep SubsurfaceMIKFAILKALSFTSVLVLLLIVALSPLYVTMGIMTRQMQSDKVN*
Ga0160422_1014954163300012919SeawaterMVKLMILKALSFTSVLVLLLIVALSPLYVTMGIMTRQMTEKTTP*
Ga0160422_1015826043300012919SeawaterMIKFAILKALSFSSVLVLLLIVALSPLYVTMGIMTRQIHEKVN*
Ga0160423_1001533673300012920Surface SeawaterMIKFAILKALSFSSVLVLLLILALSPLYVTMGLMTRQMHEKVN*
Ga0160423_1015662443300012920Surface SeawaterFVNMIKFAILKALSFTSVLVLLLIVALSPLYVTMGLMTRQMHEKVN*
Ga0160423_1016287713300012920Surface SeawaterNACVIFVNMIKFAILKALSFTSVLVLLLIVALSPLYVTMGIMTRQMHEKVN*
Ga0160423_1016874913300012920Surface SeawaterALSFSSVLVLLIIVALSPLYVTMGIMTRQMQEKVN*
Ga0160423_1030648533300012920Surface SeawaterMIKFAILKALSFSSVLVLLLIVALSPLYVTMGIMTRQMQQKIID*
Ga0160423_1031576133300012920Surface SeawaterMVKFAILKALSFTSVLVLLLIVALSPLYVTMGIMTRQMQEKTN*
Ga0160423_1078805933300012920Surface SeawaterKALSFSSVLVLLLIVALSPLYVTMGIMTRQMQEKIN*
Ga0163110_1090077933300012928Surface SeawaterMIKFAILKALSFTSVLVLLLIVALSPLYVTMGIMTRQMHEKVN*
Ga0163180_10001781273300012952SeawaterMIKFAILKALSFSSVLVLLLIVALSPLYVTMGIMTRQMQDKVN*
Ga0163179_1016221023300012953SeawaterMVKLAVIKALAFSSVLCLFLILALSPLYVTMGLMTRQMQDKVN*
Ga0163111_1213833323300012954Surface SeawaterMIKFAILKALSFSSVLVLLLIVALSPLYVTMGLMTRQMHEKVN*
Ga0181426_100864833300017733SeawaterMVKFAILKALSFSSVLVLLLIVALSPLYVTMGMMTRQMQDKVN
Ga0181433_114489233300017739SeawaterAVIKALSFTSVLVLLLIVALSPLYVTMGLMTRQMTSETK
Ga0181407_105633223300017753SeawaterMIKFAILKALSFSSVLVLLLIVAISPLYVTMGIMTRQMQDKVN
Ga0187220_103816033300017768SeawaterMIKEQIARATALMSVLVLLLIVTLSPLYVTMGIMTRQMQDKVN
Ga0181425_103499223300017771SeawaterMVKFAILKALSFSSVLVLLLIVALSPLYVTMGIMTRQMQDKVN
Ga0211584_1000100143300020248MarineMIKFAILKALSFSSVLVLLLILALSPLYVTMGLMTRQMTEKKL
Ga0211484_1000160333300020269MarineMIRYAVIKALAFSSVLVLLLIVALSPLYVTMGLMTRQINEKVN
Ga0211483_1000296453300020281MarineMIKFAILRALSFSSVLVLLLIVALSPLYVTMGIMTRQMQEKIN
Ga0211483_1015326613300020281MarineIKALAFSSVLCLILILALSPLYVTMGIMTRQMHEKIN
Ga0211621_100314093300020289MarineKALSFSSVLVLLLIVALSPLYVTMGLMTRQMQEKIN
Ga0211490_105091223300020297MarineMIKFAILKALSFSSVLVLLLIVALSPLYVTMGLMTRQMQESTR
Ga0211527_1013026813300020378MarineALSFTSVLVLLLIVALSPLYVTMGLMTRQMQEKVN
Ga0211498_1000319083300020380MarineMIKFAILKALSFSSVLVLLLILALSPLYVTMGLMTRQMQESTR
Ga0211596_1013533333300020384MarineMIKFAILKALSFSSVLVLLLIVALSPLYVTMGLMTRQMIEKKL
Ga0211618_1016325133300020393MarineFAIIKALSFTSVLVLLLILALSPLYVTMSLMTRQMTTETK
Ga0211497_1026413413300020394MarineKALSFSSVLVLLLIVALSPLYVTMGIMTRQMQEKVN
Ga0211583_1021615933300020397MarineILKALSFSSVLVLLLILALSPLYVTMGLMTRQMQEKVN
Ga0211617_1001036143300020401MarineMIKFAILKALSFSSVLVLLLIVALSPLYVTIGLMTRQMQEKVN
Ga0211617_1001571143300020401MarineMIKFAILKALSFSSVLVLLLIVALSPLYVIMGIMTRQMQEKVN
Ga0211499_1013909333300020402MarineILKALSFSSVLVLLLIVALSPLYVTMGIMTRQMHEKIN
Ga0211472_1022307333300020409MarineMIKIAILKALSFSSVLVLLLIVALSPLYVTMGIMTRQMHEKVN
Ga0211699_1021676633300020410MarineMIKFAILKALSFSSVLVLLLIVALSPLYVTMGLMTRQIQEKIN
Ga0211699_1032173623300020410MarineMVKFALLKALSFTSVLVLLLIVALSPLYVTMGLMTRQMQEKSR
Ga0211528_1038331433300020417MarineKFAILKALSFSSVLVLLLIVALSPLYVTMGLMTRQMQEKVN
Ga0211557_1011775343300020418MarineAILKALSFSSVLVLLLIVALSPLYVTMGLMTRQMQEKTN
Ga0211557_1016486123300020418MarineMIKFAILKALSFSSVLVLLLIVALSPLYVTMGLMTRQIQEKVN
Ga0211620_1000594943300020424MarineMIKFAILKALSFSSVLVLLLIVALSPLYVTMGLMTRQMQEKIN
Ga0211620_1026252123300020424MarineMIRESIAKALAFTSVLVLLLIVALSPLYVTMSLMTRQLQEKTN
Ga0211620_1036062533300020424MarineMIKFAILKALSFTSVLVLLLIVALSPLYVTMGLMTKQMIHKSK
Ga0211556_1020824433300020432MarineMIKFAILKALSFSSVLVLLLIVALSPLYVTMGLMTRQMQEKTN
Ga0211708_1001420613300020436MarineMIKFAILKALSFTSVLVLLLIVALSPLYVTMGLMTRQMHEKVN
Ga0211708_1003655113300020436MarineMIKFAILKALSFSSVLVLLLIVALSPLYVTMGIMT
Ga0211708_1019425933300020436MarineIKFAILKALSFSSVLVLLLILALSPLYVTMGLMTRQMQEKVN
Ga0211708_1045055333300020436MarineMIKFAILKALSFTSVLVLLLIVALSPLYVTMGLMT
Ga0211539_1007130013300020437MarineILKALSFSSVLVLLLIVALSPLYVTMGIMTRQMHEKVN
Ga0211539_1017173813300020437MarineILKALSFSSVLVLLLIVALSPLYVTMGIMTRQMQEKIN
Ga0211559_1000112323300020442MarineMIKFTILKALSFSSVLVLLLIVALSPLYVTMGLMTKQMHEKVN
Ga0211473_1006298143300020451MarineMVKFAILKALSFSSVLVLLLIVALSPLYVTMGIMTRQMQEKTN
Ga0211473_1023359313300020451MarineRIVKASRIFLMVKLAVIKALAFSSVLCLFLILALSPLYVTMGLMTRQMQHKVN
Ga0211543_1000132943300020470MarineMIKFAILKALSFSSVLVLLLIVALSPLYVTMGIMTRQMHEKVN
Ga0211614_1000975013300020471MarineFAILKALSFSSVLVLLLILALSPLYVTMGLMTRQMQESTR
Ga0212024_103754513300022065AqueousMIKFAILKALSFTSVLVLLLIVALSPLYVTMGIMTRQLN
Ga0224902_10007743300022066SeawaterMIKFAILKALSFSSVLVLLLIVALSPLYVTMGIMTRQMQDKVN
Ga0224906_101161873300022074SeawaterMIKFAILKALSFSSVLVLLLIVTLSPLYVTMGIMTRQMQDKVN
Ga0224906_112104133300022074SeawaterMVKLAVIKALAFSSVLCLFLILALSPLYVTMGLMTRQMQDKVN
Ga0208159_100639383300025101MarineMIKFAILKALSFSSVLVLLLIVALSPLYVTMGIMTRQMQEKVD
Ga0208159_103984033300025101MarineMIKFVILKALSFSSVLVLLLILALSPLYVTMGIMTRQMQEKVN
Ga0209348_1000561123300025127MarineMVKFAILKALSFSSVLVLLLIVALSPLYVTMGIMTRQMHEKVN
Ga0209348_100290623300025127MarineMIKFAILRALSFSSVLVLLLIVALSPLYVTMGIMTRQMQEKVN
Ga0209232_101231633300025132MarineMIKFALLKALSFTSVLVLLLIVALSPLYVTMGLMTRQMQEKTN
Ga0209232_104837813300025132MarineFAILKALSFSSVLVLLLIVALSPLYVTMGLMTRQMQESSR
Ga0209232_116130023300025132MarineMVKFAILKALSFSSVLVLLLIVALSPLYVTMGIMTRQLNEKVN
Ga0209645_110956433300025151MarineMIKFAILKALSFSSVLVLLLIVALSPLYVTMGIMTRQMQEKLN
Ga0208899_100165063300025759AqueousMIKFAILKALSFTSVLVLLLIVALSPLYVTMGIMTRQLNEKVN
Ga0208899_111393633300025759AqueousMIKFAILKALSFTSVLVLLLIVALSPLYVTMGLMTRQLNEKVN
Ga0135227_100482133300029302Marine HarborMIKFAILKALSFSSVLVLLFILALSPLYVTMGLMTRQMQEKLK
Ga0135227_102769913300029302Marine HarborLKALSLTSVLVLLLIVALSPLYVTMGLMTRQMQEKVN
Ga0135226_101787343300029308Marine HarborMIKFAILKALSFTSVLVLLLIVALSPLYVTMGLMTRQMQESTRADRDWE
Ga0183683_100909463300029309MarineMVKLLIVKTLAFSSVLCLLLILTLSPLYVITGLMTRQMHEKTN
Ga0185543_100521013300029318MarineLKALSFSSVLVLLLIVALSPLYVTMGIMTRQMHEKVN
Ga0183748_100128543300029319MarineMMKFAILKALSFTSVLVLLLIVALSPLYVTMGLMTKQMHEKVN
Ga0183748_100453583300029319MarineMIKFAILKALSFSSVLVLLLIVALSPLYVTMGIMTRQLNEKVN
Ga0183748_100934913300029319MarineKFAILKALSFSSVLVLLLIVALSPLYVTMGIMTRQMQEKVN
Ga0183748_101227373300029319MarineMIKFAILKALAFSSVLVLLLIVALSPLYVTMGLMTRQMHEKVN
Ga0183826_100633713300029792MarineLKALSFTSVLVLLLIVALSPLYVTMGLMTRQMQEKIN
Ga0183826_100932613300029792MarineLKALSFTSVLVLLLIVALSPLYVTMGLMTRQMHEKVN
Ga0183826_101702113300029792MarineMIKFAILKALSFSSVLVLLLILALSPLYVTMGLMTR
Ga0183826_101739623300029792MarineMIKFAILKALSFTSVLVLLLIVALSPLYVTMGLMTRQLHEKVN
Ga0183826_103911613300029792MarineKFAILKALSFSSVLVLLLILALSPLYVTMGLMTRQMQEKVN
Ga0315331_10005319113300031774SeawaterMVKLAVIKALAFSSVLCLFLILALSPLYVTMGLFTRMQMQEKIY


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.