Metagenome / Metatranscriptome Family F100933

Overview

Basic Information

• Family ID: F100933
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 102
• Average Sequence Length: 56 residues
• Representative Sequence: MDIKLEGDKLTITTTIGSGVPSSSGKTLVVATTNGFVAVANSDLKVSLNVIKPRK
• Number of Associated Samples: 50
• Number of Associated Scaffolds: 102

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 93.14 %
• % of genes near scaffold ends (potentially truncated): 13.73 %
• % of genes from short scaffolds (< 2000 bps): 80.39 %
• Associated GOLD sequencing projects: 42
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.66

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (78.431 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater (49.020 % of family members)
• Environment Ontology (ENVO): Unclassified (64.706 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline) (78.431 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 0.00%
  β-sheet: 32.53%
  Coil/Unstructured: 67.47%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF07728	AAA_5	1.96
PF13481	AAA_25	0.98
PF01612	DNA_pol_A_exo1	0.98
PF01555	N6_N4_Mtase	0.98
PF03237	Terminase_6N	0.98
PF04545	Sigma70_r4	0.98
PF02735	Ku	0.98
PF08406	CbbQ_C	0.98
PF12957	DUF3846	0.98

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0714	MoxR-like ATPase	General function prediction only [R]	0.98
COG0863	DNA modification methylase	Replication, recombination and repair [L]	0.98
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	0.98
COG1273	Non-homologous end joining protein Ku, dsDNA break repair	Replication, recombination and repair [L]	0.98
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	0.98

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.43 %
All Organisms	root	All Organisms	21.57 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.43 %
Viruses	superkingdom	All Organisms → Viruses	15.69 %
cellular organisms	root	All Organisms → cellular organisms	5.88 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.43 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.69 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	5.88 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.43 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.69 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.43 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.69 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.98 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.43 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.69 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.98 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.43 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.69 %
Syntrophobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales	0.98 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.43 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.69 %
Syntrophaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae	0.98 %

Level 9

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.43 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.69 %
Desulfomonile	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Desulfomonile	0.98 %

Level 10

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.43 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.69 %
Desulfomonile tiedjei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Desulfomonile → Desulfomonile tiedjei	0.98 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300002231|KVRMV2_100016129	Not Available	41945
3300002231|KVRMV2_100118707	Not Available	5788
3300004186|Ga0066647_10363276	Not Available	627
3300004212|Ga0066631_10363128	Not Available	628
3300004214|Ga0066646_10510372	Not Available	564
3300004239|Ga0066650_10231442	Not Available	926
3300005235|Ga0066637_10161485	All Organisms → cellular organisms → Bacteria	989
3300005235|Ga0066637_10208051	Not Available	816
3300005236|Ga0066636_10129909	All Organisms → cellular organisms → Bacteria	1219
3300005236|Ga0066636_10153243	Not Available	1086
3300005236|Ga0066636_10292205	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Desulfomonile → Desulfomonile tiedjei	688
3300005236|Ga0066636_10346971	Not Available	610
3300005613|Ga0074649_1065250	Not Available	1478
3300006753|Ga0098039_1031479	All Organisms → cellular organisms → Bacteria	1882
3300008002|Ga0100390_10238812	Not Available	935
3300008010|Ga0100397_1008222	Not Available	5613
3300008085|Ga0100378_1207467	Not Available	990
3300008086|Ga0100388_10567831	Not Available	512
3300008093|Ga0100393_10534479	Not Available	520
3300008095|Ga0100392_1117348	Not Available	1496
3300008255|Ga0100403_1090733	Not Available	1206
3300008255|Ga0100403_1123069	Not Available	981
3300008255|Ga0100403_1265691	Not Available	583
3300008416|Ga0115362_100163115	Not Available	500
3300008470|Ga0115371_10959515	Not Available	581
3300008470|Ga0115371_10993402	Not Available	645
3300008516|Ga0111033_1043285	All Organisms → Viruses → Predicted Viral	2142
3300008516|Ga0111033_1063551	All Organisms → Viruses → Predicted Viral	3616
3300009004|Ga0100377_1141486	Not Available	1001
3300009039|Ga0105152_10412825	Not Available	569
3300009149|Ga0114918_10010545	Not Available	7440
3300009285|Ga0103680_10202321	Not Available	1058
3300009529|Ga0114919_10134561	All Organisms → Viruses → Predicted Viral	1784
3300009529|Ga0114919_10163809	All Organisms → Viruses → Predicted Viral	1596
3300009529|Ga0114919_10361598	Not Available	1012
3300009529|Ga0114919_10554894	Not Available	789
3300009529|Ga0114919_11005967	Not Available	561
3300010291|Ga0129302_1076704	Not Available	1196
3300010413|Ga0136851_12063859	Not Available	543
3300011118|Ga0114922_10769216	Not Available	788
3300011118|Ga0114922_11705574	Not Available	505
3300014205|Ga0172380_11016680	Not Available	587
3300014613|Ga0180008_1016990	Not Available	3043
3300014613|Ga0180008_1019711	All Organisms → Viruses → Predicted Viral	2800
3300014613|Ga0180008_1022609	Not Available	2593
3300014613|Ga0180008_1038087	All Organisms → Viruses → Predicted Viral	1945
3300014613|Ga0180008_1103847	All Organisms → Viruses → Predicted Viral	1111
3300014613|Ga0180008_1153178	Not Available	893
3300014613|Ga0180008_1235799	Not Available	699
3300014613|Ga0180008_1237453	Not Available	696
3300014613|Ga0180008_1366909	Not Available	544
3300014613|Ga0180008_1387982	Not Available	527
3300014613|Ga0180008_1399711	Not Available	518
3300014656|Ga0180007_10007940	Not Available	9894
3300014656|Ga0180007_10023801	Not Available	4834
3300014656|Ga0180007_10030877	Not Available	4086
3300014656|Ga0180007_10070652	All Organisms → Viruses → Predicted Viral	2410
3300014656|Ga0180007_10120031	All Organisms → Viruses → Predicted Viral	1734
3300014656|Ga0180007_10143900	All Organisms → Viruses → Predicted Viral	1552
3300014656|Ga0180007_10151638	Not Available	1503
3300014656|Ga0180007_10171179	All Organisms → Viruses → Predicted Viral	1397
3300014656|Ga0180007_10189731	All Organisms → Viruses → Predicted Viral	1312
3300014656|Ga0180007_10194289	Not Available	1293
3300014656|Ga0180007_10277303	All Organisms → Viruses → Predicted Viral	1042
3300014656|Ga0180007_10366812	Not Available	880
3300014656|Ga0180007_10385868	Not Available	854
3300014656|Ga0180007_10407629	Not Available	826
3300014656|Ga0180007_10435245	Not Available	794
3300014656|Ga0180007_10436039	Not Available	793
3300014656|Ga0180007_10472689	All Organisms → cellular organisms → Bacteria	756
3300014656|Ga0180007_10526720	Not Available	709
3300014656|Ga0180007_10637307	Not Available	635
3300014656|Ga0180007_10723137	Not Available	590
3300014656|Ga0180007_10815335	Not Available	550
3300014656|Ga0180007_10961844	Not Available	500
3300015370|Ga0180009_10038898	Not Available	3215
3300015370|Ga0180009_10224916	Not Available	827
3300018080|Ga0180433_10001317	Not Available	41598
3300022547|Ga0212126_1072091	Not Available	1049
3300024433|Ga0209986_10339833	Not Available	699
3300024433|Ga0209986_10373986	Not Available	655
3300025008|Ga0210029_1048288	Not Available	1307
3300025016|Ga0210014_1226343	Not Available	514
3300025018|Ga0210043_1083662	Not Available	968
3300025018|Ga0210043_1117289	Not Available	761
3300025018|Ga0210043_1123132	Not Available	735
3300025021|Ga0210017_1242596	Not Available	535
3300025022|Ga0210056_1049033	All Organisms → cellular organisms → Bacteria	1970
3300025022|Ga0210056_1169670	Not Available	777
3300025022|Ga0210056_1244193	Not Available	590
3300025826|Ga0210033_1171117	Not Available	620
3300025868|Ga0210051_1275507	Not Available	700
(restricted) 3300027881|Ga0255055_10059334	All Organisms → Viruses → Predicted Viral	2132
3300029288|Ga0265297_10012108	Not Available	10418
3300029288|Ga0265297_10151863	Not Available	1758
3300031280|Ga0307428_1101233	Not Available	762
3300031539|Ga0307380_10011752	Not Available	10935
3300031578|Ga0307376_10000656	Not Available	42430
3300031885|Ga0315285_10335487	All Organisms → Viruses → Predicted Viral	1113
3300031952|Ga0315294_10084845	All Organisms → Viruses → Predicted Viral	3306
3300032020|Ga0315296_10351676	Not Available	819
3300032046|Ga0315289_10690481	Not Available	927

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.06%
Engineered	Engineered	2.94%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	95.10%
Solid Waste	Engineered → Solid Waste	2.94%
Terrestrial	Environmental → Terrestrial	1.96%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	70.59%
Marine	Environmental → Aquatic → Marine	16.67%
Sediment	Environmental → Aquatic → Sediment	3.92%
Landfill	Engineered → Solid Waste → Landfill	2.94%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.96%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	1.96%
Soil	Environmental → Terrestrial → Soil	1.96%

Type

Habitat	Taxonomy	Distribution
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	64.71%
Oceanic	Environmental → Aquatic → Marine → Oceanic	10.78%
Lake	Environmental → Aquatic → Freshwater → Lake	4.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.92%
Unclassified	Engineered → Solid Waste → Landfill → Unclassified	2.94%
Coastal	Environmental → Aquatic → Marine → Coastal	1.96%
Hydrothermal Vents	Environmental → Aquatic → Marine → Hydrothermal Vents	1.96%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.96%
Clay	Environmental → Terrestrial → Soil → Clay	1.96%
Drinking Water	Environmental → Aquatic → Freshwater → Drinking Water	0.98%
Inlet	Environmental → Aquatic → Marine → Inlet	0.98%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.98%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	0.98%
Hypersaline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline	0.98%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	64.71%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	9.80%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	4.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.92%
Unclassified	Engineered → Solid Waste → Landfill → Unclassified → Unclassified	2.94%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	1.96%
Sediment	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment	1.96%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment	1.96%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	1.96%
Chlorinated	Environmental → Aquatic → Freshwater → Drinking Water → Chlorinated	0.98%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	0.98%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	0.98%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	0.98%
Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment	0.98%
Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment	0.98%

Habitat

Habitat	Taxonomy	Distribution
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	49.02%
Aquifer	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer	15.69%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	9.80%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	3.92%
Landfill Leachate	Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate	2.94%
Marine Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment	1.96%
Marine Sediment	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment	1.96%
Hot Spring Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring Sediment	1.96%
Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment	1.96%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	1.96%
Lake Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Lake Sediment	0.98%
Groundwater	Environmental → Aquatic → Freshwater → Drinking Water → Chlorinated → Groundwater	0.98%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	0.98%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	0.98%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	0.98%
Saline Water And Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment	0.98%
Hypersaline Lake Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment	0.98%
Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment	0.98%
Mangrove Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Mangrove Sediment	0.98%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
3300002231	Marine sediment microbial communities from Santorini caldera mats, Greece - red mat	Environmental
3300004186	Groundwater microbial communities from aquifer - Crystal Geyser CG18_big_fil_WC_8/21/14_2.50	Environmental
3300004212	Groundwater microbial communities from aquifer - Crystal Geyser CG02_land_8/20/14_3.00	Environmental
3300004214	Groundwater microbial communities from aquifer - Crystal Geyser CG17_big_fil_post_rev_8/21/14_2.50	Environmental
3300004239	Groundwater microbial communities from aquifer - Crystal Geyser CG23_combo_of_CG06-09_8/20/14_all	Environmental
3300005235	Groundwater microbial communities from aquifer - Crystal Geyser CG08_land_8/20/14_0.20	Environmental
3300005236	Groundwater microbial communities from aquifer - Crystal Geyser CG07_land_8/20/14_0.80	Environmental
3300005613	Saline sediment microbial communities from Etoliko Lagoon, Greece - sediment	Environmental
3300006753	Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG	Environmental
3300008002	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-14	Environmental
3300008010	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-21	Environmental
3300008085	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-02	Environmental
3300008086	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-12	Environmental
3300008093	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-17	Environmental
3300008095	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-16	Environmental
3300008255	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-01t	Environmental
3300008416	Sea floor sediment microbial communities from Gulf of Mexico Methane Seep - MPC12B	Environmental
3300008470	Sediment core microbial communities from Adelie Basin, Antarctica. Combined Assembly of Gp0136540, Gp0136562, Gp0136563	Environmental
3300008516	Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 125 cmbsf. Combined Assembly of MM3PM3	Environmental
3300009004	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-01	Environmental
3300009039	Lake sediment microbial communities from Lake Baikal, Russia to study Microbial Dark Matter (Phase II) - Lake Baikal sediment 0-5 cm	Environmental
3300009149	Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG	Environmental
3300009285	Microbial communities from groundwater in Rifle, Colorado, USA - 2A_0.1um	Environmental
3300009529	Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG	Environmental
3300010291	Hot spring sediment bacterial and archeal communities from California, USA to study Microbial Dark Matter (Phase II) - Blank Spring sediment metaG	Environmental
3300010413	Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_9	Environmental
3300011118	Deep subsurface microbial communities from Aarhus Bay to uncover new lineages of life (NeLLi) - Aarhus_00045 metaG	Environmental
3300014205	Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 162 metaG	Engineered
3300014613	Groundwater microbial communities from the Aspo Hard Rock Laboratory (HRL) deep subsurface site, Sweden - MM_PW_MetaG	Environmental
3300014656	Groundwater microbial communities from the Aspo Hard Rock Laboratory (HRL) deep subsurface site, Sweden - MM_PC_MetaG	Environmental
3300015370	Groundwater microbial communities from the Aspo Hard Rock Laboratory (HRL) deep subsurface site, Sweden - OS_PC_MetaG	Environmental
3300018080	Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_1 metaG	Environmental
3300022547	Wilbur_combined assembly	Environmental
3300024433	Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG (SPAdes)	Environmental
3300025008	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-21 (SPAdes)	Environmental
3300025016	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-19 (SPAdes)	Environmental
3300025018	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-01t (SPAdes)	Environmental
3300025021	Groundwater microbial communities from aquifer - Crystal Geyser CG08_land_8/20/14_0.20 (SPAdes)	Environmental
3300025022	Groundwater microbial communities from aquifer - Crystal Geyser CG07_land_8/20/14_0.80 (SPAdes)	Environmental
3300025826	Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-01 (SPAdes)	Environmental
3300025868	Groundwater microbial communities from aquifer - Crystal Geyser CG23_combo_of_CG06-09_8/20/14_all (SPAdes)	Environmental
3300027881 (restricted)	Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_27	Environmental
3300029288	Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 137-91	Engineered
3300031280	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-240	Environmental
3300031539	Soil microbial communities from Risofladan, Vaasa, Finland - UN-3	Environmental
3300031578	Soil microbial communities from Risofladan, Vaasa, Finland - TR-2	Environmental
3300031885	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_36	Environmental
3300031952	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40	Environmental
3300032020	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_18	Environmental
3300032046	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_40	Environmental

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
KVRMV2_10001612946	3300002231	Marine Sediment	MEIKVEGDRLTITATISSGVPSSSGRSLVVATTNGFVGVDNSDIKVSLNVIKPRT*
KVRMV2_10011870713	3300002231	Marine Sediment	MEIKVVGNKLTITADLGSGVPSSTGKTLVVATTNGFQAVAGTDIRVSLNVVKPRS*
Ga0066647_103632761	3300004186	Groundwater	MEIKLEGEKLTITTTIGPGVPSSSGKTLLLATTNGFVAVAGSDIKISLNVIKPRKRG*
Ga0066631_103631281	3300004212	Groundwater	MCGDKLTITCTIGSGVPSSRAKSLIVATTNGFVPVADSDIKVSLNVIKPRKGG*
Ga0066646_105103722	3300004214	Groundwater	MEIKIVDDKLTITATLGSGVPSSTGKTLVVATTNGFQAVAG
Ga0066650_102314424	3300004239	Groundwater	KLEGDKLTITTTIGSGVPSSSGKTLVVATTNGFVAVANSDLKVSLNVIKPRK*
Ga0066637_101614853	3300005235	Groundwater	MEIKIVDDKLTITATLGSGVPSSTGKTLVVATTNGFQAVAGTKYKVSLNVIKDRKGK*
Ga0066637_102080511	3300005235	Groundwater	MEIKLEGEKLTITTTIGSGVPSSSGKTLLLATTNGFVAVAGSDIKVSLNVIKPRKGG*
Ga0066636_101299092	3300005236	Groundwater	VEIKVEGDKLTITCTLGSGVPSSSGKTLVVATTNGFQAVAGTDIRISLNVIKPRK*
Ga0066636_101532432	3300005236	Groundwater	MEIKIVDDKLTIIATLGSGVPSSTGKTLVVATTNGFQAVAGTKYKVSLNVIKDRKGK*
Ga0066636_102922051	3300005236	Groundwater	MEIKVEGDKLTITTTLGSGVPSSTGKTLIVATTNGFQAVAGTDIRVSLNVIKPKK*
Ga0066636_103469712	3300005236	Groundwater	MDIKLEGDKLTITTTIGSGVPSSSGKTLVVATTNGFVAVANSDLKVSLNVIKPRK*
Ga0074649_10652501	3300005613	Saline Water And Sediment	MEIKVDGDKLTLVCTLGKGVPSSSGKTLVVATTNGFVRVAGSNVKVSLNVIKPRS*
Ga0098039_10314792	3300006753	Marine	MEIKVTGNTLTITATISDGVPSKSGKSNIVATTGGFTTVTGSDLKVSLNVIKPR*
Ga0100390_102388121	3300008002	Aquifer	MEIKIVDDKLTITATLGSGVPSRTGKTLVVATTNGFQAVAGTKYKVNLNVIKDRKGK*
Ga0100397_10082223	3300008010	Aquifer	MEIKIVDDKLTITATLGSGVPSRTGKTLVVATTNGFQAVAGTKYKVSLNVIKDRKGK*
Ga0100378_12074671	3300008085	Aquifer	SSLIHKGDKEMEIKVEGDKLTIITTLGSGVPSSTGKTLVVATTNGFQAVAGTDIRVSLNVIKPKK*
Ga0100388_105678311	3300008086	Aquifer	MRMEIKIVDDKLTITATLGSGVPSSTGKTLVVATTNGFQAVAGTKYKVSLNVIKDRKGK*
Ga0100393_105344792	3300008093	Aquifer	MEIKVEGDKLTITATLGSGVPSSTGKTLIVATTNGFQAVAGTDIRVSLNVIKPKK*
Ga0100392_11173484	3300008095	Aquifer	MEIKIVDDKLTITATLGSGVTSRTGKTLVVATTNGFQAVAGTKYKVSLNVIKDRKRK*
Ga0100403_10907334	3300008255	Aquifer	MCGDKLTITCTIGSGVPSSRAKSLIVATTNGFVPVADSDIKVSLNVIKPRKRG*
Ga0100403_11230694	3300008255	Aquifer	MEIKLEGNKLTITCSIGSGVPSSSGKTLVVATTNGFVPVPDSNLRVSLNVIKPKK*
Ga0100403_12656913	3300008255	Aquifer	MEIKGDKLTITCTIGSGVPSKSGKSNVIATTNGFVPVADSDIKVSLNVIKSRKGG*
Ga0115362_1001631152	3300008416	Sediment	MNIKLEGTELIIKATVSSGVPSKTGKSLIVATTNGFIAVEGTDLRVSLNVIKAK*
Ga0115371_109595152	3300008470	Sediment	MEIKVEGDKLTITCTIGSGVPSKSGKTSIVATTNGFTAVADSDLRVSLNVIKPRKS*
Ga0115371_109934021	3300008470	Sediment	MENKPEMEIKVEGNRLTITCTIGSGVPSKSGKTSVVATTNGFTEVAGSDLRVSLNVIKPRRGS*
Ga0111033_10432855	3300008516	Marine Sediment	MEIKVEGNTLTITATISSGVPSSSGKSLVVATTNGFIPVANSDLKVSLNVIKPRQGRPRGD*
Ga0111033_10635514	3300008516	Marine Sediment	MDIKLEGDKLTITATISSGVPSSSGKTLVVATTNGFVSVADSDLKVSLNVVKPRK*
Ga0100377_11414862	3300009004	Aquifer	MEIKVEGDKLTITTTLGSGVPSSTGKTLVVATTNGFQAVAGTDIRVSLNVIKPKK*
Ga0105152_104128251	3300009039	Lake Sediment	MEIKLEGNRLTITTDLGNGVSSKSGKTLIMATTSGFITVAGHPELRVSLNVIKSK*
Ga0114918_100105454	3300009149	Deep Subsurface	MDIKVEGSKLTIVCTLGSGVPSKSGKTLVVATTNGFVDVIEAGIRVSLNVVKPRS*
Ga0103680_102023213	3300009285	Groundwater	MEFRVSGNTLTITCQLSPGTSSKSGKTLLVASTNGFMPVEGSNLRVSLNVIKPKS*
Ga0114919_101345612	3300009529	Deep Subsurface	MDIKVESDKLTITCTIGSGVLSSTGKSLVVATTNGFVAVAGSDLKVSLNVIKPRRS*
Ga0114919_101638095	3300009529	Deep Subsurface	MDIKLEGDKLTITATIGSGVPSSSGKTLVVATTNGFVSVADSDLKVSLNIVKPRK*
Ga0114919_103615981	3300009529	Deep Subsurface	MDIKLEGNKLTITATIGSGVPSSSGKTLVVATTNGFISVADSNLKVSLNVVKPRK*
Ga0114919_105548943	3300009529	Deep Subsurface	MDIKLEGDKLTITATISSGVPSASGKTLVVATTNGFVSVVDTDLKVSLNVVKPRKS*
Ga0114919_110059672	3300009529	Deep Subsurface	MDIKIEGSKLTITCTLGSGVPSSTGKTLVVATTNGFVPVEGTDIKVSLNVVKPRK*
Ga0129302_10767042	3300010291	Hot Spring Sediment	MEIKLEGNKLIIEAIVSSGVPSKSEKTLVVASTNGFVEVPGTNLKVSLNVVKPRR*
Ga0136851_120638592	3300010413	Mangrove Sediment	MDIKVTGDKLTITCTISSGVPSSTGKSLVVATTNGFVGVDGSDLKVSLNVIKPRKG*
Ga0114922_107692162	3300011118	Deep Subsurface	MEIKLNGNTLTITATISSGVPSKSGKTNIVATTNGFVGVDGSDIKVSLNVIKPRKGG*
Ga0114922_117055741	3300011118	Deep Subsurface	MDIKVTGNTLTITCTIGSGVPSSSGKSLVVATTNGFVAVADSDLRVSLNIIKPRKG*
Ga0172380_110166802	3300014205	Landfill Leachate	MEIKVEGNKLTITCILSSGVPSKSGKTNIVATTNGFTPVAGSDIRVSLNVIKPR*
Ga0180008_10169905	3300014613	Groundwater	MEIKIAGDKLTITATLSSGVPSSSGKTLIVATTNGFVSVEDSDVKVSLNVTKPRK*
Ga0180008_10197114	3300014613	Groundwater	MEFKVVGQTLTITCQLSPGTTSKSGKTLLVATTNGFTPVDGTNLRVSLNVIKPRS*
Ga0180008_10226093	3300014613	Groundwater	MDIKLEGDKLTITCTVSSGIPSSSGKTLVVATTNGFVSVADSDLKVSLNVIKPKK*
Ga0180008_10380874	3300014613	Groundwater	MEIKVEGNKLTLTCDIGKGTLSSSGKSLVVATTNGFVPVGGTDLKVSLNVIKPNGR*
Ga0180008_11038472	3300014613	Groundwater	MEITIEGNNLIIKTPLSAGVPSRSGKTLVVASTNGFTDVPDSNIRVSLNVIKPKG*
Ga0180008_11531783	3300014613	Groundwater	MEIKIVGDKLTITATLSSGVPSSSGKTLIVATTNGFVSVADSDVKVSLNVIKPRK*
Ga0180008_12357994	3300014613	Groundwater	MDIKLEGDKLTITATISSGVPSKSGKSNIVATTNGFVSVADSDIKVSLNVI
Ga0180008_12374533	3300014613	Groundwater	VEIKVEGSKLTITCTLGSGVPSSTGKSLMLATTNGFQAVAGTDIRVSLNVIKPRKGG*
Ga0180008_13669091	3300014613	Groundwater	VDIKVEGNNLIIKTPLSAGVPSRSGKTLVVASTNGFTDVPDSNIRVSLNVIKPKG*
Ga0180008_13879822	3300014613	Groundwater	MDIKLAGNKLIITCDLGSGVPSKSGKTSIVATTNGFVGVPDSDIKVSLNVIKPR*
Ga0180008_13997111	3300014613	Groundwater	MEIKIVGNKLTITCDLSSGVPSKTGRTLVVASTNGFVPVADSNVKVSLNVIKPR*
Ga0180007_1000794019	3300014656	Groundwater	MEIKIEGDKLHIIATIGSGVPSSSGKTLVVATTNGFVHVADSDLSVSLNVTKPRKK*
Ga0180007_100238018	3300014656	Groundwater	MDIKVQGDKLIITCTIGGGVPSKSGKTSIVATTNGFTAVAGSDLKVSLNVIKPR*
Ga0180007_100308777	3300014656	Groundwater	MDIKLEGNTLTITCIISSGILSSSGKSLIVATTNGFVSVADSDLKVSLNVIKPKK*
Ga0180007_100706527	3300014656	Groundwater	MDIKLNGTTLTITCTIGSGVPSKSGKTNIVATTNGFVAVPDSDIRVSLNVIKPKKGG*
Ga0180007_101200314	3300014656	Groundwater	VEIKVEGNTLTITCPLGSGVPSSTGKSLVVATTNGFIAVANSDLKVSLNVIKPRKS*
Ga0180007_101439004	3300014656	Groundwater	MDIKLAGNKLTITCDLGSGVPSKSGKTSIVATTNGFVGVPDSDIKVSLNVIKPR*
Ga0180007_101516385	3300014656	Groundwater	MDFKIDGNKLTITCQLSQGSPSRSGKTLIVASTNGFTPVEGTDIRISLNVIKS
Ga0180007_101711793	3300014656	Groundwater	MDIKLEGDKLTITCIVSSGVPSSSGKSLVVATTNGFVSVADSDLKVSLNVIKLKK*
Ga0180007_101897313	3300014656	Groundwater	MDIKVVGDKLTITATLSSGTPSASGKTLVVATTSGFVDVPGSDVRVSLNVIKRRK*
Ga0180007_101942893	3300014656	Groundwater	MEIKIAGDKLTITATLSSGVPSSSGKTLIVATTNGFVSVADSDVKVSLNV
Ga0180007_102773032	3300014656	Groundwater	MEKGGIMEIKVEGSKLTITCTLGSGVPSSTGKSLMLATTNGFQAVAGTDIRVSLNVIKSRKS*
Ga0180007_103668123	3300014656	Groundwater	MDIKLEGDKLTITATIGSGVPSSSGKTLVVATTNGFVGVADSDIKVSLNVVKPRRG*
Ga0180007_103858681	3300014656	Groundwater	MEIKIEGNKLTITCNLGSGVPSKSGKTNIVATTNGFQSVAGSDVRVSLNVIKPRKS*
Ga0180007_104076291	3300014656	Groundwater	MEIRVVNNVLTITCPLGSGVPSSTGKTLIVATTNGFTPVADSDIKVSLNVVKPRRS*
Ga0180007_104352451	3300014656	Groundwater	MEIKIVGDKLTIICTLSSGVPSSSGKTLIVATTNGFVSVADSDVKVSLNVIK
Ga0180007_104360392	3300014656	Groundwater	MEIKVEGTVLAITCLLGSGVPSKSGKTKIVATPNGFTPVVDTDIRVSLNVI
Ga0180007_104726891	3300014656	Groundwater	TMDIKLTGDKLTITCTIGSGVPSSSGKTLVVATTNGFVGVADSDIKVSLNVTKPRKGG*
Ga0180007_105267202	3300014656	Groundwater	MEIKVTGNILTITCPLGSGVPSSTGKSLMLATTGGFVPVADSNIRVSLNVIKPRS*
Ga0180007_106373072	3300014656	Groundwater	MEFKVDGNKLTITATIGSGVPSSTGKSLMMATTNGFVAVEGTDLKVSLNVIKPRKS*
Ga0180007_107231372	3300014656	Groundwater	VEIKVEGNKLVITATLGSGVPSSTGKSLMLATTNGFQAVAGTDIKVSLNVIKPRKF*
Ga0180007_108153352	3300014656	Groundwater	MEIKVEGNILTITCPLGSGVPSKSGKTKIVATTNGFTPVVDTDIRVSLNVIKPIR*
Ga0180007_109618442	3300014656	Groundwater	VEIKLTGNTLTITATISSGVPSKSGKSNIVATTNGFVGVDGSDIKVSLNVIKPRKGG*
Ga0180009_100388984	3300015370	Groundwater	MDIKLENGKLTITVTIGPGVPSASGKTLVVAGTGGFVPVPGSELKVSLNVIKSIR*
Ga0180009_102249161	3300015370	Groundwater	MDIKLEGDKLTITCIVSSGVPSSSGKSLVVATTNGFVSVADSDLKVSLNVIKPKK*
Ga0180433_1000131755	3300018080	Hypersaline Lake Sediment	LIFRKGGSMDIKLEGKKLTIQTEVTEGTVSSSGKSMVVATTNGFVGVPDSDLKVSINVIKPRR
Ga0212126_10720912	3300022547	Hot Spring Sediment	MEIKLEGNKLIIEAIVSSGVPSKSEKTLVVASTNGFVEVPGTNLKVSLNVVKPRR
Ga0209986_103398332	3300024433	Deep Subsurface	MDIKLEGDKLTITATISSGVPSASGKTLVVATTNGFVSVVDTDLKVSLNVVKPRKP
Ga0209986_103739864	3300024433	Deep Subsurface	MDIKLEGDKLTITATVSSGVPSASGKTLVVATTNGFVSVVDTDLKV
Ga0210029_10482882	3300025008	Aquifer	MEIKIVDDKLTITATLGSGVPSSTGKTLVVATTNGFQAVAGTKYKVSLNVIKDRKGK
Ga0210014_12263432	3300025016	Aquifer	MEIKIVDDKLTIIATLGSGVPSSTGKTLVVATTNGFQAVAGTKYKVSLNVIKDRKGK
Ga0210043_10836623	3300025018	Aquifer	MEIKLEGEKLTITTTIGSGVPSSSGKTLLLATTNGFVAVAGSDIKVSLNVIKPRKGG
Ga0210043_11172892	3300025018	Aquifer	MCGDKLTITCTIGSGVPSSRAKSLIVATTNGFVPVADSDIKVSLNVIKPRKGG
Ga0210043_11231322	3300025018	Aquifer	MEIKIVDDKLTITATLGSGVPSSTGKTLVVATTNGFQAVAGTKYKVNLNVIKDRKGK
Ga0210017_12425961	3300025021	Groundwater	MEIKIVDDKLTITATLGSGVPSRTGKTLVVATTNGFQAVAGTKYKVSLNVIKDRKGK
Ga0210056_10490335	3300025022	Groundwater	VEIKVEGDKLTITCTLGSGVPSSSGKTLVVATTNGFQAVAGTDIRISLNVIKPRK
Ga0210056_11696704	3300025022	Groundwater	EIKLEGEKLTITTTIGPGVPSSSGKTLLLATTNGFVAVAGSDIKVSLNVIKPRKGG
Ga0210056_12441931	3300025022	Groundwater	EIKIVDDKLTITATLGSGVPSSTGKTLVVATTNGFQAVAGTKYKVSLNVIKDRKGK
Ga0210033_11711171	3300025826	Aquifer	MEIKLEGEKLTITTTIGPGVPSSSGKTLLLATTNGFVAVAGSDIKVSLNVIKPRKGG
Ga0210051_12755073	3300025868	Groundwater	MDIKLEGDKLTITTTIGSGVPSSSGKTLVVATTNGFVAVANSDLKVSLNVIKPRK
(restricted) Ga0255055_100593342	3300027881	Seawater	MEIKLDGDKLTITATISSGVPSKSGKSNIVATTNGFVGVPDSDIKVSLNVIKPRKEG
Ga0265297_1001210811	3300029288	Landfill Leachate	MEIKLTGDKLTITTTISSGVPSSSGKTLVVATTNGFVGVDGSDIKVSLNVVKPRKVN
Ga0265297_101518631	3300029288	Landfill Leachate	VEIKVQDGKLIITCQLGAGVPSSTGKSLILATTSGFVPVEGSDIKVSLNVIKSRK
Ga0307428_11012332	3300031280	Salt Marsh	MDIKVQGNTLTITCPLGSGVPSSSGKTLIVATTNGFMPVEGSDLKVSLNVIKPKKGG
Ga0307380_100117528	3300031539	Soil	MDIKVIGDKLTITATISSGVPSSTGKSLVVATTNGFVGVDGSDIKVSLNVIKPRKSSPNE
Ga0307376_1000065642	3300031578	Soil	MDIKLEGDKLTITATISSGVPSSSGKTLVVATTNGFISVVDTDLKVSLNVVKPRKS
Ga0315285_103354874	3300031885	Sediment	MDIKISGDKLTITCTLGSGVPSASGKTMIVATTNGFVGVAGSDVKVSLNVIKPRK
Ga0315294_100848452	3300031952	Sediment	VDIKVQGDKLIITCTIGSGVPSSTGKSLVVATTNGFMAVEGSDLRVSLNVIKPRK
Ga0315296_103516763	3300032020	Sediment	KIEGDILTIKVVLSVGEPSKSGKTLIVATTNGFVPVEDSNLKVSLNVIKPRKS
Ga0315289_106904811	3300032046	Sediment	MEIKVVGDTLTIKATLGKGTPSASGKTLVVATTNGFKVVEGYKVSLNVIKAR