Metagenome / Metatranscriptome Family F100920

Basic Information
Family ID	F100920
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	63 residues
Representative Sequence	MNPNFNWAIVAERMQALQTEADTAARARHAARIRRGTARARLARSYRRVLAFAPAGSGR
Number of Associated Samples	71
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	48.04 %
% of genes near scaffold ends (potentially truncated)	23.53 %
% of genes from short scaffolds (< 2000 bps)	92.16 %
Associated GOLD sequencing projects	69
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (62.745 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (43.137 % of family members)
Environment Ontology (ENVO)	Unclassified (53.922 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.000 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84. 1Ga0062595_1006953561 2Ga0066388_1020501962 3Ga0066388_1025649161 4Ga0066388_1034220362 5Ga0066388_1042206152 6Ga0008090_158415852 7Ga0070714_1000707263 8Ga0070697_1003271742 9Ga0066903_1010153842 10Ga0066903_1010617963 11Ga0066903_1014513052 12Ga0066903_1044345972 13Ga0066903_1058818432 14Ga0066903_1061917942 15Ga0066903_1084746292 16Ga0066903_1084746352 17Ga0079222_103540902 18Ga0079222_113404262 19Ga0079221_100590942 20Ga0079221_105167951 21Ga0075433_106992323 22Ga0075423_100942103 23Ga0126384_101710972 24Ga0126382_107415662 25Ga0126373_119702942 26Ga0126373_122977982 27Ga0126370_105751302 28Ga0126370_117498152 29Ga0126376_107152542 30Ga0126376_131998941 31Ga0126372_129893281 32Ga0126372_133156342 33Ga0126378_127362551 34Ga0126379_107211691 35Ga0126381_1004703542 36Ga0126381_1007381123 37Ga0126383_124446881 38Ga0126383_127294762 39Ga0132258_116176773 40Ga0182032_113225092 41Ga0182034_112257911 42Ga0182037_106931193 43Ga0126371_113765292 44Ga0126371_113999893 45Ga0207646_109457251 46Ga0207700_100124133 47Ga0209178_12731191 48Ga0209073_101495193 49Ga0209465_102563452 50Ga0318516_105052632 51Ga0318516_105204912 52Ga0318534_100447593 53Ga0318534_102654642 54Ga0318534_106883542 55Ga0318534_107751482 56Ga0318538_101664403 57Ga0318528_100569333 58Ga0310915_103408162 59Ga0318542_104264512 60Ga0318542_105382521 61Ga0318574_101651391 62Ga0318574_108482732 63Ga0318572_104221521 64Ga0318572_105881152 65Ga0318560_101925102 66Ga0310686_1014713423 67Ga0318493_107760301 68Ga0306918_114250971 69Ga0318502_102968443 70Ga0318494_103664672 71Ga0318535_105673691 72Ga0318521_107251442 73Ga0318546_112653892 74Ga0318508_11997111 75Ga0318552_107420561 76Ga0318548_104805552 77Ga0318557_105082001 78Ga0318523_105942031 79Ga0318564_103103501 80Ga0306925_101447921 81Ga0318522_104059121 82Ga0310916_112001402 83Ga0306926_123110761 84Ga0306922_103150382 85Ga0306922_116765482 86Ga0318563_104495343 87Ga0318563_107040701 88Ga0318569_103371651 89Ga0318559_103167562 90Ga0318549_100165903 91Ga0318575_101641531 92Ga0318510_104491672 93Ga0318513_100372014 94Ga0318524_103537752 95Ga0318524_107121702 96Ga0306924_123897112 97Ga0318525_102083023 98Ga0318525_102916892 99Ga0306920_1007025633 100Ga0306920_1011122802 101Ga0310914_105848461 102Ga0318519_102968012
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84. 1Ga0062595_1006953561 2Ga0066388_1020501962 3Ga0066388_1025649161 4Ga0066388_1034220362 5Ga0066388_1042206152 6Ga0066903_1084746292 7Ga0079222_113404262 8Ga0126382_107415662 9Ga0182032_113225092 10Ga0182034_112257911 11Ga0318516_105204912 12Ga0318534_107751482 13Ga0318538_101664403 14Ga0318574_101651391 15Ga0318523_105942031 16Ga0306920_1011122802
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58. 1Ga0066903_1010153842 2Ga0066388_1025649161 3Ga0066388_1034220362 4Ga0066388_1042206152 5Ga0070714_1000707263 6Ga0066903_1010617963 7Ga0066903_1014513052 8Ga0066903_1044345972 9Ga0066903_1058818432 10Ga0066903_1061917942 11Ga0066903_1084746352 12Ga0126384_101710972 13Ga0126382_107415662 14Ga0126373_119702942 15Ga0126373_122977982 16Ga0126370_117498152 17Ga0126376_107152542 18Ga0126372_129893281 19Ga0126381_1007381123 20Ga0132258_116176773 21Ga0126371_113765292 22Ga0207646_109457251 23Ga0209178_12731191 24Ga0209073_101495193 25Ga0318516_105052632 26Ga0318516_105204912 27Ga0318534_100447593 28Ga0318534_106883542 29Ga0318572_104221521 30Ga0310686_1014713423 31Ga0318494_103664672 32Ga0306920_1011122802 33Ga0318519_102968012
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 56.32% β-sheet: 0.00% Coil/Unstructured: 43.68%
Feature Viewer
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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
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Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF03795	YCII	43.14
PF00378	ECH_1	23.53
PF08281	Sigma70_r4_2	4.90
PF04542	Sigma70_r2	2.94
PF07287	AtuA	0.98
PF05199	GMC_oxred_C	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	43.14
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	2.94
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	2.94
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	2.94
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	2.94
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	0.98

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.75 %
Unclassified	root	N/A	37.25 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.75 %
Unclassified	root	N/A	37.25 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.75 %
Unclassified	root	N/A	37.25 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	61.76 %
Unclassified	root	N/A	37.25 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	55.88 %
Unclassified	root	N/A	37.25 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	28.43 %
Unclassified	root	N/A	37.25 %

Name	Rank	Taxonomy	Distribution
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	5.88 %
Unclassified	root	N/A	37.25 %

Scaffold	Taxonomy	Length	IMG/M Link
3300004479\|Ga0062595_100695356	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	815	Open in IMG/M
3300005332\|Ga0066388_102050196	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1027	Open in IMG/M
3300005332\|Ga0066388_102564916	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	928	Open in IMG/M
3300005332\|Ga0066388_103422036	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	810	Open in IMG/M
3300005332\|Ga0066388_104220615	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	732	Open in IMG/M
3300005363\|Ga0008090_15841585	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	806	Open in IMG/M
3300005435\|Ga0070714_100070726	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3016	Open in IMG/M
3300005536\|Ga0070697_100327174	Not Available	1321	Open in IMG/M
3300005764\|Ga0066903_101015384	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1518	Open in IMG/M
3300005764\|Ga0066903_101061796	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1488	Open in IMG/M

Environmental Properties

Associated Habitat Types

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Habitat	Taxonomy	Distribution
Environmental	Environmental	97.06%
Host-Associated	Host-Associated	2.94%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	2.94%
Terrestrial	Environmental → Terrestrial	97.06%

Habitat	Taxonomy	Distribution
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.96%
Soil	Environmental → Terrestrial → Soil	97.06%

Habitat	Taxonomy	Distribution
Loam	Environmental → Terrestrial → Soil → Loam	16.67%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	80.39%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.86%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	53.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.75%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.98%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.63%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	5.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.94%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	43.14%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	17.65%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	12.75%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.98%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M

Showing 1 to 10 of 71 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062595_1006953561	3300004479	Soil	MLEEDTVNPNFNYAIVAERMQTLQAEADQAARTRHAARIRRGTARARLARRYRRVLAFAPAGSGR*
Ga0066388_1020501962	3300005332	Tropical Forest Soil	MNPNFNWAIVAERMHALQAEADTAARARHAARVRRGTLRARLARRSRRGLAFAPAGPRR*
Ga0066388_1025649161	3300005332	Tropical Forest Soil	AIVAERMQSLQDEAATAARARHATPIRRAADRARQARRSRRWLVFAPAGSAGSTRAPLA*
Ga0066388_1034220362	3300005332	Tropical Forest Soil	MNPNFNRAIVAERMQTLQAEAATAARARTAPRGRHLPAHARQARRSRRWLAFAPAGSGR*
Ga0066388_1042206152	3300005332	Tropical Forest Soil	MNPNFNYAMVAERMQTRQAEADVARTRRAARIRHGTVRARLARRTHRGLVLAPAGSSR*
Ga0008090_158415852	3300005363	Tropical Rainforest Soil	MNPNFTWAIVAERMQTMQAEADTAARARQAARIRRGTARTRLARRYRSVLAFAPAGSGR*
Ga0070714_1000707263	3300005435	Agricultural Soil	MNPNFNWAIIAERMQTLQTEADTAARARHAAGVRRGTARARLGRRSRRGLAFAPAGSGR*
Ga0070697_1003271742	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MNPNFNWAIVAERMQALQAEADTATRARHAARIRRSTASARQARRPRRWLAFAPAGSGR*
Ga0066903_1010153842	3300005764	Tropical Forest Soil	MNPNFNWAIVAERMQALQTEADTAARARHAARIRRGTARARLARSYRRVLAFAPAGSGR*
Ga0066903_1010617963	3300005764	Tropical Forest Soil	MLEEDTMNPNLNYALVAERMQTIQADAATAARARHAARIRRATASLRQARRSRRWLSFAPAGSGR*
Ga0066903_1014513052	3300005764	Tropical Forest Soil	MNPNFNWAIVAERMQTLQAEADTAARARHTARIRRGAAHARQARRSRRWLAFAPAGLGR*
Ga0066903_1044345972	3300005764	Tropical Forest Soil	MNPNFNWAIVAERMQTMQAEADTAARARQAARIRRGTARTRLARRYRSVLAFAPAGSGR*
Ga0066903_1058818432	3300005764	Tropical Forest Soil	MNPNFNWAIVAERMQALQAEAGTVTRARHAARVRRAAAHTRQARRSRRWLSFALAGSGR*
Ga0066903_1061917942	3300005764	Tropical Forest Soil	MNPNFNYAIVAERMRTLQAGAAAATRARHAARIRRGTARTRLARRYGRVLAFAPAGSGR*
Ga0066903_1084746292	3300005764	Tropical Forest Soil	MIEEDTMNPNFNWAIVAERMQTLQAEADTAARARHAIRIRRAAAYVRQPRRSRRGLALVSVGSRR*
Ga0066903_1084746352	3300005764	Tropical Forest Soil	MIEEDTMNPNFNWAIVAERMQTLQAEADTAARARHATRIRRAAAHVRQPRRSRRGLELVSVGSRR*
Ga0079222_103540902	3300006755	Agricultural Soil	MLEEDTVNPNFNYAIVTERMQTLQAEADQAARARHTARIRRGTARARLARRYRRV
Ga0079222_113404262	3300006755	Agricultural Soil	ATLEEDTMNPNFNYAIVAERMQSLQDEAATVTRARHAARIRAAARTRQPRRSRRWLAFAPAGSGR*
Ga0079221_100590942	3300006804	Agricultural Soil	MLEEDTVNPNFNYAIVTERMQTLQAEADQAARARHTARIRRGTARARLARRYRGVLAFAPAGSGR*
Ga0079221_105167951	3300006804	Agricultural Soil	MIEEDTMNPNYNYAIVAERMQTLQAEAEASRARHAARIQRGTARARLARRPRRWLAFAPAGSGR*
Ga0075433_106992323	3300006852	Populus Rhizosphere	AMLEEDTVNPNFNYAIVTERMQTLQAEADQAARARHTARIRRGTARARLARRYRRVLAFAPAGSGR*
Ga0075423_100942103	3300009162	Populus Rhizosphere	MLEEDTVNPNFNYAIVTERMQTLQAEADQAARARHTARIRRGTARARLARRYRRVLAFAPAGSGR*
Ga0126384_101710972	3300010046	Tropical Forest Soil	MNPNLNWAIVAERMHTLQAEADTAARARHAARIRRGTIRARRVRLSRQGLSFAAASSGR*
Ga0126382_107415662	3300010047	Tropical Forest Soil	VTDDPGRSRATIEEDTMNPNFNWAIVAERMQSLQDEAATAARARHANRIRRAADRAPQARRSRRLLAFAPAGSGR*
Ga0126373_119702942	3300010048	Tropical Forest Soil	MIEEDTMNPNFNWAIVAERMQTLQAEADTAARARHAIRIRRAAAHPRQPRRSRRVLALVPAGSRR*
Ga0126373_122977982	3300010048	Tropical Forest Soil	MLEEDTMNPNLNLALVAERMQTLQAEADKAARARHAARIRRGTARARLAQRYRGVLAFAPAGSGR*
Ga0126370_105751302	3300010358	Tropical Forest Soil	MNPNLNWAIVAERMHTLQAEADTAARARHAARSRRGTIRARRVRLSRQGLSFAAASSGR*
Ga0126370_117498152	3300010358	Tropical Forest Soil	MLEEDAMNPNFNYAIVAERMQSLQDEAATVTRARHAARIRRAAARTRQPGRSRRWLAFAPAGSGR*
Ga0126376_107152542	3300010359	Tropical Forest Soil	VTDDPGPFRAMLEEDTMNPNFSWAIVAERMQSRQDEAAAAARARHAARIRRGTAGGRPARRSRRWLSFAPAGSGR*
Ga0126376_131998941	3300010359	Tropical Forest Soil	MLAEDTMNPNFNWAIVAERMHALQAEADTAARARHAARVRRGTVRARLARRSRRGLAFAPAGPRR*
Ga0126372_129893281	3300010360	Tropical Forest Soil	MLAEDTMNPNFNWAIVAERMHALQAEADTAARARHAARVRRGTLRARLARRSRRGLAFAPPAPRR*
Ga0126372_133156342	3300010360	Tropical Forest Soil	MLEEDTMNPNFNYAIVAERMQTLQAEADAVTRARHAARIRRGTARARLARRHGRVLAFAPAGSGR*
Ga0126378_127362551	3300010361	Tropical Forest Soil	MIEEDTMNPNFNWAIVAERMQTLQAEADTAARARHATRIRRAAAYVRQPRRSRRGLALVSVGSRR*
Ga0126379_107211691	3300010366	Tropical Forest Soil	MPKEDTMNPNFNWAIVAERMQALQTEADTAARARHAARIRRGTARARLARSYRRVLAFAPAGSGR*
Ga0126381_1004703542	3300010376	Tropical Forest Soil	MIEEDTMNPNFNWAIVAERMQTLQAEADTAARARHATRIRRAAAHVRQPRRSRRGLALVSVGSRR*
Ga0126381_1007381123	3300010376	Tropical Forest Soil	MLEEDTMNPNLNWALVAERMQALQAEADTAARARRAARIRRGTARARLARRYRTVLAFAPAGSGR*
Ga0126383_124446881	3300010398	Tropical Forest Soil	VTDDPGPFRAMLEEDTMNPNFSWAIVAERMQSRQDEAAAAARARHAARIRRGTAGGRQARRSRRWLSFAPAGSGR*
Ga0126383_127294762	3300010398	Tropical Forest Soil	MIEEDTMNSNFNYAIVTERMQALQAEADTAARARHAARIRRGTARARLARRYHRVLAFAPAGSGR*
Ga0132258_116176773	3300015371	Arabidopsis Rhizosphere	MLEEDAMNPNFNYAIVAERMQTLQAEADKAVRARHAARIRRGTARARLARRYRSVLAFAPAGSGR*
Ga0182032_113225092	3300016357	Soil	WAIVAERMQALQVEAETVTRTRHAARIRRVTAHTRQLRRSRRVLALVPAGSRR
Ga0182034_112257911	3300016371	Soil	NWAIVAERMHTLQAEADTARVRHAARIRRGTARAQLARRSRRWRAFAPAGSGR
Ga0182037_106931193	3300016404	Soil	MIEEDAMNPNLNSAIVAERMHTLQAEADTARVRHAARIRRGTARAQLARRSRRWRAFAPAGSGR
Ga0126371_113765292	3300021560	Tropical Forest Soil	MNTNLNFALVAERMQTLQAEAATAARARQAARIRRGTARARLARRYRSVLAFAPAGSGR
Ga0126371_113999893	3300021560	Tropical Forest Soil	AMIEEDTMNPNFNWAIVAERMQTLQAEADTAARARHATRIRRAAAHVRQPRRSRRGLELVSVGSRR
Ga0207646_109457251	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MNPNFNWAIVAERMQALQAEADTATRARHAARIRCSTASARQARRPRRWLAFAPAGSGR
Ga0207700_100124133	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MNPNFNWAIIAERMQTLQTEADTAARARHAAGVRRGTARARLGRRSRRGLAFAPAGSGR
Ga0209178_12731191	3300027725	Agricultural Soil	MLEEDTVNPNFNYAIVTERMQTLQAEADQAARARHTARIRRGTARARLARRYRGVLAFAPAGSGR
Ga0209073_101495193	3300027765	Agricultural Soil	MNPNYNYAIVAERMQTLQAEAEASRARHAARIQRGTARARLARRPRRWLAFAPAGSGR
Ga0209465_102563452	3300027874	Tropical Forest Soil	MNPNFNWAIVAERMQALQTEADTAARARHAARIRRGTARARLARSYRRVLAFAPAGSGR
Ga0318516_105052632	3300031543	Soil	MNPNFNYAIVAARMQALQAEADAATRARHAARIRRGTARARLARRHSRVLAFAPVGSGR
Ga0318516_105204912	3300031543	Soil	MLEEDTMNPHLNEAIVAEQRQSLQAEAVTAARVRHAARIRRGTARTGQARRSRRWLSFAAAGLGR
Ga0318534_100447593	3300031544	Soil	MIEEDAMNPNLNWAIVAERMHTLQAEADTARVRHAARIRRGTARAQLARRSRRWRAFAPAGSGR
Ga0318534_102654642	3300031544	Soil	MIEEDTMNPNLNWAIVAERMHTLQAEADTARVGHAARIRRGTARAQLARRSRRWRAFAPAGSGR
Ga0318534_106883542	3300031544	Soil	MILEDTMNPNFNWAIVAERMQALQVEAETVTRTRHAARIRRVTAHTRQLRRSRRVLALVPAGSRR
Ga0318534_107751482	3300031544	Soil	MNPNVNWAIVAEQMQSRQAEAVAARRARPAAGSRRGTARGPLARRSRRFLAFAQAGSGR
Ga0318538_101664403	3300031546	Soil	EKDDPGPSRAMIEEDTMNPNLNWAIVAERMHTLQAEADTARVRHAARIRRGTARAQLARRSRRWRAFAPAGSGR
Ga0318528_100569333	3300031561	Soil	MLEEDTMNPNFNYAIVAARMQALQAEADAATRARHAARIRRGTARARLARRHSRVLAFAPVGSGR
Ga0310915_103408162	3300031573	Soil	MNPNLNWAIVAERMHTLQAEADTARVRHAARIRRGTARAQLARRSRRWRAFAPAGSGR
Ga0318542_104264512	3300031668	Soil	MIEEDTMNPNLNWAIVAERMHTLQAEADTARVRHAARIRRGTARAQLARRSRRWRAFAPAGSGR
Ga0318542_105382521	3300031668	Soil	MNPNLNYAIVAGRMQALQAEADAATRARYAARIRRGTARARLARRHSRVLAFAPAGSGR
Ga0318574_101651391	3300031680	Soil	FVVGMRRRSRAVLEEDTMNPNFNYAIVAARMQALQAEADAATRARHAARIRRGTARARLARRHSRVLAFAPVGSGR
Ga0318574_108482732	3300031680	Soil	IPGRSRAMIEEDAMNPNLNWAIVAERMHTLQAEADTARIRHAARIRRGTARAQLARRSARWPAFAPAGSGR
Ga0318572_104221521	3300031681	Soil	MNPNFNYAIVAERMQAVQAEADTAARARHAARIRRGTARARLARRYHRVLAFAPAGLGR
Ga0318572_105881152	3300031681	Soil	MIEEDTMNPNLNWAIIAEQMQSRQAEAVAARRARPAAGSRRGTARGPLARRSRRFLAFAPARSGR
Ga0318560_101925102	3300031682	Soil	MNPNFNYAIVAAQMQALQAEADAATRARHAARIRRGTARARLARRHSRVLAFAPVGSGR
Ga0310686_1014713423	3300031708	Soil	MNPNFNWAIVAERMQTLQSEADTAARARHAARIRRGTARALMARRSRRGLALAPAGSGR
Ga0318493_107760301	3300031723	Soil	TIPGRSRAMLEEDTMNPHLNEAIVAERRQSLQAEAATAARVRHAARIRRGTARTGQARRSRRWLSFAAAGLGR
Ga0306918_114250971	3300031744	Soil	MNPNLNWAIIAEQMQSRQAEAVAARRARPAAGSRRGTARGPLARRSRRFLAFAQAGSGR
Ga0318502_102968443	3300031747	Soil	MIEEDTMNPNVNWAIVAEQMQSRQAEAVAARRARPAAGSRRGTARGPLARRSRRFLAFAQAGSGR
Ga0318494_103664672	3300031751	Soil	MNPNLNYAIVAERMRALQAEADAATRARHVARIRRGTARARLARRHTRVLAFAPAGSGR
Ga0318535_105673691	3300031764	Soil	VNWAIVAEQMQYRQAEAVAARRGRPAAGSRRGTARGPLARRSRRFLAFAQAGSGR
Ga0318521_107251442	3300031770	Soil	MNPNFNYAIVAERMQAVQAEADTAARARLAARIRRGTARARLARRYHRVLAFAPAGLGR
Ga0318546_112653892	3300031771	Soil	MNPHLNEAIVAERRQSLQAEAATAARVRHAARIRRGTARTGQARRSRRWLSFAAAGLGR
Ga0318508_11997111	3300031780	Soil	MNPNFNYAIVAARMQTLQAEADAATRARHAARIRRGTARARLARRHSRVLAFAPVGSGR
Ga0318552_107420561	3300031782	Soil	NFNYAIVAERMQAVQAEADTAARARHAARIRRGTARARLARRYHRVLAFAPAGLGR
Ga0318548_104805552	3300031793	Soil	MNPNFNWAIVAERMQALQVEAETVTRTRHAARIRRVTAHTRQLRRSRRVLALVPAGSRR
Ga0318557_105082001	3300031795	Soil	RRTIPGRSRAMIEEDAMNPNLNWAIVAERMHTLQAEADTARVRHAARIRRGTAHARLARRSRRWLAFAPAGSGR
Ga0318523_105942031	3300031798	Soil	AGFRRGGDRRSRAMIEEDTMNPNVNWAIVAEQMQYRQAEAVAARRARPAAGSRRGTARGPLARRSRRFLAFAPARSGR
Ga0318564_103103501	3300031831	Soil	MIEEDAMNPNLNWAIVAERMHTLQAEADTARVGHAARIRRGTARAQLARRSRRWRAFAPAGSGR
Ga0306925_101447921	3300031890	Soil	LEEDTMNPNFNYAIVAVRMQTLQAEADAATRARHAARIRRGTARARLARRHSRVLAFAPVGSGR
Ga0318522_104059121	3300031894	Soil	MNPNLNWAIVAERMHTLQAEADTARVRHAARIRRGTAHARLARRSRRWLAFAPAGSGR
Ga0310916_112001402	3300031942	Soil	MNPNLNWAIVAERMHTLQAEADTARVGHAARIRRGTARAQLARRSRRWRAFAPAGSGR
Ga0306926_123110761	3300031954	Soil	MNPNVNWAIVAEQMQYRQAEAVAARRARPAAGSRRGTARGPLARRSRRFLAFAPARSGR
Ga0306922_103150382	3300032001	Soil	MILEDTMNPNFNWAIVAERMQALQVEAETVTRARHAARIRRVTAHTRQLRRSRRVLALVPAGSRR
Ga0306922_116765482	3300032001	Soil	MLEEDTMNPNLNYAIVAGRMQALQAEADAATRARYAARIRRGTARARLARRHSRVLAFAPAGSGR
Ga0318563_104495343	3300032009	Soil	NPNFNYAIVAERMQAVQAEADTAARARHAARIRRGTARARLARRYHRVLAFAPAGLGR
Ga0318563_107040701	3300032009	Soil	MLEEDTMNPHLNEAIVAERRQSLQAEAATAARVRHAARIRRGTARTGQARRSRRWLSFAAAGLGR
Ga0318569_103371651	3300032010	Soil	NPNVNWAIVAEQMQSRQAEAVAARRARPAAGSRRGTARGPLARRSRRFLAFAPAGSGR
Ga0318559_103167562	3300032039	Soil	MILEETMNPNFNWAIVAERMQALQVEAETVTRARHAARIRRVTAHTRQLRRSRRVLALVPAGSRR
Ga0318549_100165903	3300032041	Soil	MNPNLNWAIVAERMHTLQAEADTARIRHAARIRRGTARAQLARRSRRWRAFAPAGSGR
Ga0318575_101641531	3300032055	Soil	MIEEDAMNPNLNWAIVAERMHTLQAEADTARVRHAARIRRGTAHARLARRSRRWLAFAPAGSGR
Ga0318510_104491672	3300032064	Soil	MRRRSRAVLEEDTMNPNFNYAIVAARMQALQAEADAATRARHAARIRRGTARARLARRHSRVLAFAPVGSGR
Ga0318513_100372014	3300032065	Soil	RRRSRAVLEEDTMNPNFNYAIVAARMQALQAEADAATRARHAARIRRGTARARLARRHSRVLAFAPVGSGR
Ga0318524_103537752	3300032067	Soil	MNPNVNWAIVAEQMQSRQAEAVAARRARPAAGSRRGTARGPLARRSRRFLAFAPARSGR
Ga0318524_107121702	3300032067	Soil	IQEDTMNPNFNWAIVAERMQALQVEAETVTRARHAARIRRVTAHTRQLRRSRRVLALVPAGSRR
Ga0306924_123897112	3300032076	Soil	NLNWAIVAERMHTLQAEADTARVRHAARIRRGTARAQLARRSRRWRAFAPAGSGR
Ga0318525_102083023	3300032089	Soil	IEEDTMNPNVNWAIVAEQMQYRQAEAVAARRGRPAAGSRRGTARGPLARRSRRFLAFAPAGSGR
Ga0318525_102916892	3300032089	Soil	MNPHLNEAIVAEQRQSLQAEAVTAARVRHAARIRRGTARTGQARRSRRWLSFAAAGLGR
Ga0306920_1007025633	3300032261	Soil	MIEEDTMNPNVNWAIVAEQMQSRQAEAVAARRARPAAGSRRGTARGPLARRSRRFLAFAPARSGR
Ga0306920_1011122802	3300032261	Soil	MNPNLNYAIVAERMQALQAEADAATRARHAARIRRGTARTRLAQRHSRVPAFAPAGSGR
Ga0310914_105848461	3300033289	Soil	MNPNFNYAIVAARMQALQAEADAATRARHVARIRRGTARARLARRHTRVLAFAPAGSGR
Ga0318519_102968012	3300033290	Soil	MNPNVNWAIVAEQMQYRQAEAVAARRGRPAAGSRRGTARGPLARRSRRFLAFAPAGSGR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100920

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences