Metagenome / Metatranscriptome Family F100899

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100899
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	45 residues
Representative Sequence	QAGWTASITNLNTTKSCAIYVGAQTPTAPATTSDPEGAPVCR
Number of Associated Samples	80
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	15.69 %
% of genes from short scaffolds (< 2000 bps)	14.71 %
Associated GOLD sequencing projects	75
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (85.294 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (17.647 % of family members)
Environment Ontology (ENVO)	Unclassified (32.353 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (61.765 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 17.14% Coil/Unstructured: 82.86%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.32
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.32
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF13633	Obsolete Pfam Family	19.61
PF07963	N_methyl	18.63
PF00672	HAMP	13.73
PF13544	Obsolete Pfam Family	9.80
PF00854	PTR2	4.90
PF02518	HATPase_c	4.90
PF00158	Sigma54_activat	3.92
PF04185	Phosphoesterase	2.94
PF01713	Smr	1.96
PF02954	HTH_8	1.96
PF13365	Trypsin_2	1.96
PF00543	P-II	0.98
PF02597	ThiS	0.98
PF00291	PALP	0.98
PF02687	FtsX	0.98
PF00574	CLP_protease	0.98
PF01850	PIN	0.98
PF13419	HAD_2	0.98
PF01402	RHH_1	0.98
PF03626	COX4_pro	0.98
PF11104	PilM_2	0.98
PF00072	Response_reg	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG3104	Dipeptide/tripeptide permease	Amino acid transport and metabolism [E]	4.90
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	2.94
COG0616	Periplasmic serine protease, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	1.96
COG0740	ATP-dependent protease ClpP, protease subunit	Posttranslational modification, protein turnover, chaperones [O]	1.96
COG0347	Nitrogen regulatory protein PII	Signal transduction mechanisms [T]	0.98
COG1030	Membrane-bound serine protease NfeD, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	0.98
COG1977	Molybdopterin synthase sulfur carrier subunit MoaD	Coenzyme transport and metabolism [H]	0.98
COG2104	Sulfur carrier protein ThiS (thiamine biosynthesis)	Coenzyme transport and metabolism [H]	0.98
COG3125	Heme/copper-type cytochrome/quinol oxidase, subunit 4	Energy production and conversion [C]	0.98

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.29 %
All Organisms	root	All Organisms	14.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.29 %
cellular organisms	root	All Organisms → cellular organisms	14.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.29 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	14.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.29 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	11.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.29 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	11.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.29 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.29 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.29 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	0.98 %
unclassified Gemmatimonadales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.29 %
unclassified Gemmatimonadaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae	0.98 %
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.29 %
Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	0.98 %
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300006861\|Ga0063777_1489699	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	839	Open in IMG/M
3300011090\|Ga0138579_1257893	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	846	Open in IMG/M
3300011120\|Ga0150983_11568368	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	765	Open in IMG/M
3300012160\|Ga0137349_1073916	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	624	Open in IMG/M
3300012208\|Ga0137376_10157581	All Organisms → cellular organisms → Bacteria	1955	Open in IMG/M
3300012208\|Ga0137376_10301442	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1391	Open in IMG/M
3300012210\|Ga0137378_10476775	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1154	Open in IMG/M
3300012210\|Ga0137378_10809227	All Organisms → cellular organisms → Bacteria	849	Open in IMG/M
3300012211\|Ga0137377_10505157	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1147	Open in IMG/M
3300012351\|Ga0137386_10555513	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	827	Open in IMG/M
3300018064\|Ga0187773_10367874	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	823	Open in IMG/M
3300021420\|Ga0210394_10715376	Not Available	877	Open in IMG/M
3300022722\|Ga0242657_1067288	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	823	Open in IMG/M
3300027857\|Ga0209166_10452743	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	663	Open in IMG/M
3300032160\|Ga0311301_10253960	All Organisms → cellular organisms → Bacteria	2893	Open in IMG/M
3300032828\|Ga0335080_10634646	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1120	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.22%
Aquatic	Environmental → Aquatic	10.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.22%
Sediment	Environmental → Aquatic → Sediment	9.80%
Freshwater	Environmental → Aquatic → Freshwater	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	78.43%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	9.80%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.88%
Loam	Environmental → Terrestrial → Soil → Loam	4.90%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	47.06%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	16.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	9.80%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.82%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.88%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.96%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.98%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.98%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	17.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	13.73%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	9.80%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	6.86%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	6.86%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	6.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	4.90%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.96%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.98%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.98%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.98%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300004606	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 54 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006861	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 3 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300009678	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011090	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 69 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011440	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT840_2	Environmental	Open in IMG/M
3300011443	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT630_2	Environmental	Open in IMG/M
3300012040	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT746_2	Environmental	Open in IMG/M
3300012160	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT630_2	Environmental	Open in IMG/M
3300012166	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT660_2	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012676	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT433_2	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300014879	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT45_16_10D	Environmental	Open in IMG/M
3300014883	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT760_16_10D	Environmental	Open in IMG/M
3300017657	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015	Environmental	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022522	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022721	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022722	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024178	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK35	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026343	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)	Environmental	Open in IMG/M
3300026528	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)	Environmental	Open in IMG/M
3300026540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033808	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_100_20	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25382J37095_102600072	3300002562	Grasslands Soil	SGTQAGWTSSVTNINTTKSCGIYVGAVTPSAPATTADPEGAPVCR*
Ga0068962_13018532	3300004606	Peatlands Soil	GWTAGITNLNTVTSCAIYIGQITPAAPATASSSEGAPVCQ*
Ga0058899_122085491	3300004631	Forest Soil	WTASVTNINTTKSCGIYIGAITPAAPALTTDPEGAPVCR*
Ga0066680_108609412	3300005174	Soil	AGWTAGITNINTPKSCAIYVGAVTPAAPATTANSEGAPTCQ*
Ga0066678_103585021	3300005181	Soil	GTAAGWTAGITNINTPKSCAIYVGAVTPAAPATTANSEGAPTCK*
Ga0066678_109310361	3300005181	Soil	AGWTVAIKNLNTAKSCAIYVGAVTPVTPATTTDPEGAPVCR*
Ga0070730_1000130523	3300005537	Surface Soil	TASITNINTPTSCAIYIGAVTPTAPATTSNAEGAPVCQ*
Ga0070730_104482312	3300005537	Surface Soil	VGTGTQAGWTVGVTNINTPKSCAIYIGAVTPAAPATTSSPEGAPVCS*
Ga0070732_102765521	3300005542	Surface Soil	SITNLNTPTSCAIYIGAVTPTAPATATSAEGAPVCK*
Ga0066695_108102752	3300005553	Soil	ITVGTGTAAGWSVSLTNINTAKSCAIYVGAVTPTAPATTADAEGAPVCR*
Ga0066704_101215081	3300005557	Soil	AGWTAGITNINTPKSCAIYVGAVTPAAPATTANSEGAPTCK*
Ga0066703_104029242	3300005568	Soil	APTIGTGTQAGWTAHITNLNTTKSCGIYVGAITPQAPAATTDPEGAPVCK*
Ga0066703_106554221	3300005568	Soil	VGTGTQAGWTASITNLNTTKSCAIYVGAQTPAAPATTTDPEGAPVCR*
Ga0066706_100083067	3300005598	Soil	VGTGTAAGWTAGITNINTPKSCAIYVGAVTPAAPATTANSEGAPTCK*
Ga0079222_115047641	3300006755	Agricultural Soil	TQAGWTASITNLNTPTSCAIYIGAVTPTAPATSTNAEGAPVCQ*
Ga0066665_103237582	3300006796	Soil	TITVGTGTAAGWSVSLTNINTAKSCAIYVGAVTPTAPATTADAEGAPVCR*
Ga0066665_115750892	3300006796	Soil	GWSVSLTNINTAKSCAIYVGAVTPTAPATTADAEGAPVCR*
Ga0066659_114669051	3300006797	Soil	TITVGTGTASGWSVSITNINTAKSCGIYVGAVTPTAPATTADAEGAPVCR*
Ga0079221_101417694	3300006804	Agricultural Soil	GWTASITNINTPTSCAIYIGAVTPTAPATTSNAEGAPVCQ*
Ga0079220_100959134	3300006806	Agricultural Soil	SITNINTPTSCAIYIGAVTPTAPATSSNAEGAPVCK*
Ga0079220_103450782	3300006806	Agricultural Soil	WTASVTNINTPTSCAIYIGAVTPSAPATSASAEGAPVCK*
Ga0063777_14896991	3300006861	Peatlands Soil	TVGNTLGAVTIGTGTQAGWTAGITNLNTVTSCAIYIGQITPAAPATASSSEGAPVCQ*
Ga0066710_1049161522	3300009012	Grasslands Soil	QAGWTASITNLNTTKSCAIYVGAQTPTAPATTSDPEGAPVCR
Ga0066709_1032231011	3300009137	Grasslands Soil	TGNTLQANPTVGTGTQAGWTVAISNLNTSKSCAIYVGAVTPVTPAATTDPEGAPVCR*
Ga0105340_12147542	3300009610	Soil	AGWTVNVTNTNTSKSCGIYIGAVTPTAPATAASPEGAPVCQ*
Ga0105252_106044352	3300009678	Soil	GWTTNVTNTNTSKSCGIYIGAVTPTAPATAASPEGAPVCQ*
Ga0134063_100362253	3300010335	Grasslands Soil	TASGWSVSITNINTAKSCAIYVGAVTPTAPATTADAEGAPVCR*
Ga0134063_107208542	3300010335	Grasslands Soil	VGTGTASGWSVSITNINTAKSCAIYVGAVTPTAPATTADAEGAPVCR*
Ga0126377_123650432	3300010362	Tropical Forest Soil	VGTGTQAGWTAAITNLNTTKSCAIYVGAQAPAAPATTADPEGAPVCR*
Ga0134128_112123191	3300010373	Terrestrial Soil	LGAITTGTGTQAGWTASITNINTPTSCAIYIGAVTPTAPATSASAEGAPVCQ*
Ga0126381_1001542741	3300010376	Tropical Forest Soil	AGWTASITNINTPTSCAIYIGAVTPTAPATTSNAEGAPVCR*
Ga0126381_1031717801	3300010376	Tropical Forest Soil	AGWTASITNINTPTSCAIYIGAVTPTAPATTSNAEGAPVCQ*
Ga0136449_1002604104	3300010379	Peatlands Soil	TIGTGTQAGWTSHITNLNTTTSCGIYIGAITPAAPATASSPEGAPVCQ*
Ga0138579_12578932	3300011090	Peatlands Soil	QWCPTVGNTLGAVTIGTGTQAGWTAGITNLNTVTSCAIYIGQITPAAPATASSSEGAPVCQ*
Ga0150983_115683682	3300011120	Forest Soil	NTLGAVTIGTGTQAGWTSNITNLNTTVSCGIYIGNITPTAPATTSSPEGAPVCQ*
Ga0150983_143204342	3300011120	Forest Soil	AGWTASVTNINTTKSCGIYIGAITPAAPALTTDPEGAPVCR*
Ga0137433_11871391	3300011440	Soil	QAGWTTNVTNTNTSKSCGIYIGAVTPTAPATAASPEGAPVCQ*
Ga0137457_12083562	3300011443	Soil	VTNTNTSKSCGIYIGAVTPTAPATAASPEGAPVCQ*
Ga0137461_11524222	3300012040	Soil	GTQAGWTVNVTNTNTSKSCGIYIGAVTPTAPATAASPEGAPVCQ*
Ga0137349_10739161	3300012160	Soil	TGNTLGAVTTGVGTQAGWTVNVTNINTSKSCAIYTGAVTPTAPATAASPEGAPVCQ*
Ga0137350_10735392	3300012166	Soil	GTQAGWTTNVTNTNTSKSCGIYIGAVTPTAPATAASPEGAPVCQ*
Ga0137383_107380861	3300012199	Vadose Zone Soil	GTQAGWTASITNLNTTKSCGIYVGAITPMAPAAATDPEGAPVCR*
Ga0137382_104635652	3300012200	Vadose Zone Soil	GTGTQAGWTAHITNLNTTKSCGIYVGAITPQAPAATTDPEGAPVCK*
Ga0137374_103296581	3300012204	Vadose Zone Soil	QAGWTASVTNINTAKSCAIYIGLVTPSAPATTASPEGAPVCQ*
Ga0137374_112483911	3300012204	Vadose Zone Soil	QAGWTASVTNINTAKSCAIYIGLVTPSAPATTASPEGAPVCK*
Ga0137380_101673331	3300012206	Vadose Zone Soil	SVGTGTQAGWTASVTNLNTTKSCAIYIGAQAPAAPATASDPEGAPVCR*
Ga0137380_115574712	3300012206	Vadose Zone Soil	GTQAGWTASITNINTSKSCAIFIGAVTPVAPATATSPEGAPVCQ*
Ga0137376_101575811	3300012208	Vadose Zone Soil	LTAPTIGTGTQAGWTAHITNLNTTKSCGIYVGAITPQAPAATTDPEGAPVCK*
Ga0137376_103014424	3300012208	Vadose Zone Soil	TLTAPQIGTGTQAGWTASVRNLNTTKSCGIYVGAITPMAPAATTDPEGAPVCR*
Ga0137378_104767751	3300012210	Vadose Zone Soil	TTGNTLTAPQIGTGTQAGWTASVRNLNTTKSCGIYVGAITPMAPAATTDPEGAPVCR*
Ga0137378_108092271	3300012210	Vadose Zone Soil	TTGNTLTAPQIGTGTQAGWTAHITNLNTTKSCGIYVGAITPQAPAATTDPEGAPVCR*
Ga0137377_105051574	3300012211	Vadose Zone Soil	GNTLTAPQIGTGTQAGWTASVRNLNTTKSCGIYVGAITPMAPAATTDPEGAPVCR*
Ga0137370_100266704	3300012285	Vadose Zone Soil	GWTAHITNLNTTKSCGIYVGAITPQAPAATTDPEGAPVCK*
Ga0137387_109665782	3300012349	Vadose Zone Soil	GWTASITNINTSKSCAIFIGAVTPVAPATATSPEGAPVCQ*
Ga0137387_111613102	3300012349	Vadose Zone Soil	TGTQAGWTVAISNLNTSKSCAIYVGAVTPVTPAATTDPEGAPVCR*
Ga0137386_101202551	3300012351	Vadose Zone Soil	KNLNTSKSCAIYVGAVTPVTPAATTDPEGAPVCR*
Ga0137386_105555131	3300012351	Vadose Zone Soil	TLATPQIGTGTQAGWTASVSNLNTTKTCGIYVGAITPMAPAAATDPEGAPVCR*
Ga0137386_111956672	3300012351	Vadose Zone Soil	LAAPSVGTGTQAGWTASVTNLNTTKSCAIYIGAQAPAAPATAADPEGAPVCR*
Ga0137367_111862861	3300012353	Vadose Zone Soil	TASVTNINTAKSCAIYIGLVTPSAPATTASPEGAPVCK*
Ga0137341_10493971	3300012676	Soil	TTGVGTQAGWTTNVTNTNTSKSCGIYIGAVTPTAPATAASPEGAPVCQ*
Ga0134077_101893782	3300012972	Grasslands Soil	TVAISNLNTSKSCAIYVGAVTPVTPAATTDPEGAPVCR*
Ga0134076_105863952	3300012976	Grasslands Soil	SGWSVSITNINTAKSCAIYVGAVTPTAPATTADAEGAPVCR*
Ga0134075_105179881	3300014154	Grasslands Soil	SNLNTSKSCAIYVGAVTPVTPAATTDPEGAPVCR*
Ga0180062_11033743	3300014879	Soil	VTTGAGTQAGWTVNITNANTAKSCAIYTGLVTPAAPATAASPEGAPVCQ*
Ga0180086_11548292	3300014883	Soil	GTQAGWTVNITNANTAKSCAIYTGLVTPAAPATAASPEGAPVCQ*
Ga0134074_11554821	3300017657	Grasslands Soil	TITVGTGTAAGWSVSLTNINTAKSCAIYVGAVTPTAPATTADAEGAPVCR
Ga0134083_101947432	3300017659	Grasslands Soil	QAGWTVAISNLNTSKSCAIYVGAVTPVTPAATTDPEGAPVCR
Ga0187805_104481441	3300018007	Freshwater Sediment	GTQAGWTASITNLNTPTSCAIFVGAVTPTAPATTTSAEGAPVCQ
Ga0187773_103678741	3300018064	Tropical Peatland	GNTLGTPTIGTGTQAGWTASITNQNTTKSCAIYVGATAPAAPATTADPEGAPICR
Ga0215015_103996382	3300021046	Soil	VTTGTGTQAGWTVNVTNTNTSKSCGIYVGAVTPTAPATAASPEGAPVCQ
Ga0210394_107153762	3300021420	Soil	PTVGNTLGAVTIGTGTQAGWTSHITNLNTTVSCGIYIGAITPAAPATTSSPEGAPVCQ
Ga0126371_1000137518	3300021560	Tropical Forest Soil	WTASITNINTPTSCAIYIGAVTPTAPATTSNAEGAPVCQ
Ga0126371_100219001	3300021560	Tropical Forest Soil	AGWTASITNINTPTSCAIYIGAVTPTAPATTSNAEGAPVCR
Ga0242659_10298342	3300022522	Soil	AGWTSNITNLNTTVSCGIYIGNITPTAPATTSSPEGAPVCQ
Ga0242659_11191281	3300022522	Soil	ITNLNTTVSCGIYIGAITPAAPATTSSPEGAPVCQ
Ga0242666_11131421	3300022721	Soil	QAGWTAGETNLNTTVSCAIYVGSITPTAPASASSPEGAPVCQ
Ga0242657_10303121	3300022722	Soil	AGWTSSITNLNTTVSCGIYIGAITPAAPATTSSPEGAPVCQ
Ga0242657_10672881	3300022722	Soil	TTGNTLGAITIGTGTQAGWTAGETNLNTTVSCAIYIGSITPTAPASASTPEGAPVCQ
Ga0247694_10087233	3300024178	Soil	WPAPSGTQAGWTTSVTNINTPKSCAIYIGAVTPTAPATTSSPEGAPVCA
Ga0207699_100467071	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	ITTGTGTQAGWTASITNLNTPTSCAIYIGAVTPTAPATSSSAEGAPVCQ
Ga0207699_110826132	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	PSPRAQAQAGWTASITNINTPTSCAIYIGAVTPTAPATSTNAEGAPVCQ
Ga0209159_10446531	3300026343	Soil	QANPTVGTGTQAGWTVAIKNLNTSKSCAIYVGAVTPVTPAATTDPEGAPVCR
Ga0209378_10039201	3300026528	Soil	GTITVGTGTAAGWSVSLTNINTAKSCAIYVGAVTPTAPATTADAEGAPVCR
Ga0209376_13069752	3300026540	Soil	TVAIKNLNTAKSCAIYVGAVTPVTPAAGTDPEGAPVCR
Ga0209073_100889613	3300027765	Agricultural Soil	SITNINTPTSCAIYIGAVTPTAPATSSNAEGAPVCK
Ga0209580_106051741	3300027842	Surface Soil	ASITNLNTPTSCAIYIGAVTPTAPATASSAEGAPVCQ
Ga0209166_100216841	3300027857	Surface Soil	AGWTASITNINTPTSCAIYIGAVTPTAPATTSNAEGAPVCQ
Ga0209166_104527431	3300027857	Surface Soil	VSYCTTQGNTLGAITVGTGTQAGWTASETNINTPKSCAIYIGAVTPAAPATTSSPEGAPVCA
Ga0209166_104546851	3300027857	Surface Soil	VGTGTQAGWTVGVTNINTPKSCAIYIGAVTPAAPATTSSPEGAPVCS
Ga0209415_100005341	3300027905	Peatlands Soil	GWTSHITNLNTTTSCGIYIGAITPAAPATASSPEGAPVCQ
Ga0209415_1000110748	3300027905	Peatlands Soil	GWTSHITNLNTTTSCGIYIGAITPAAPATASSSEGAPVCQ
Ga0307284_102421562	3300028799	Soil	TTNVTNTNTSKSCGIYIGAVTPTAPASATSPEGAPVCQ
Ga0307310_104724442	3300028824	Soil	TTGTGTQAGWTTNVTNANTSKSCGIYIGAVTPTAPAAAASPEGAPVCK
Ga0307469_100709264	3300031720	Hardwood Forest Soil	QAGWTTNVTNANTSKSCGIYIGAVTPTAPASAASPEGAPVCR
Ga0307468_1008432981	3300031740	Hardwood Forest Soil	VTNTNTSKSCGLYIGAVTPTAPASAASPEGAPVCK
Ga0311301_102539601	3300032160	Peatlands Soil	GNTLGTVTIGTGTQAGWTSHITNLNTTTSCGIYIGAITPAAPATASSSEGAPVCQ
Ga0310896_106161141	3300032211	Soil	TVTTGVGTQAGWTVNVTNANTSKTCGIYIGAVTPAAPATAASPEGTPICQ
Ga0335085_104714581	3300032770	Soil	ASVTNQNTTKSCAIYVGATAPAAPATTADPEGAPVCR
Ga0335079_105751002	3300032783	Soil	ASITNVNTPTSCAIYIGAVTPTAPATASSAEGAPTCK
Ga0335080_106346461	3300032828	Soil	WCATQGNTLGSITTGTGTQAGWTASVTNINTPVSCAIYIGAVTPTAPATASSAEGAPTCK
Ga0335083_108140122	3300032954	Soil	GWTASITNVNTPTSCAIYIGAVTPTAPATASSAEGAPTCK
Ga0314867_039947_2_124	3300033808	Peatland	GWTSHITNANTAKSCGIYIGAVTPAAPATTASPEGAPVCQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100899

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences