NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F100890

Metagenome Family F100890

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F100890
Family Type Metagenome
Number of Sequences 102
Average Sequence Length 129 residues
Representative Sequence MNADEDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHVTKVLDRAHGGSKTLAVAQKGAFRERSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAPDPGGPYR
Number of Associated Samples 97
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 4.90 %
% of genes near scaffold ends (potentially truncated) 48.04 %
% of genes from short scaffolds (< 2000 bps) 86.27 %
Associated GOLD sequencing projects 87
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (99.020 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere
(15.686 % of family members)
Environment Ontology (ENVO) Unclassified
(31.373 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(57.843 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128.130.132.134.136.138.140.142.144.146.148.150.152.154.156.158.160.162.164.166.168.170.172.174.176.178.180.182.184.186.188.190.192.194.196.198.200.202.204.206.208.210.212.214.216.218.220.222.224
1Ga0073692_10647951
2Ga0074071_10100872
3Ga0074072_10901432
4Ga0070658_111873222
5Ga0070683_1001306513
6Ga0070690_1006213351
7Ga0066388_1040759342
8Ga0068869_1007286752
9Ga0070691_108799531
10Ga0070687_1000404803
11Ga0070692_108144961
12Ga0070688_1004623312
13Ga0070703_104802341
14Ga0070701_109302392
15Ga0066687_108302362
16Ga0068867_1021284551
17Ga0070707_1018285371
18Ga0070698_1008996422
19Ga0070679_1001097323
20Ga0070679_1004505373
21Ga0070679_1008118962
22Ga0070684_1002282063
23Ga0070665_1005846732
24Ga0068855_1004040112
25Ga0070702_1012589051
26Ga0066905_1006145431
27Ga0068870_109979242
28Ga0068860_1009545581
29Ga0066651_106307861
30Ga0079222_122210041
31Ga0075428_1004359322
32Ga0075421_1002825421
33Ga0075421_1011399761
34Ga0075430_1003789671
35Ga0075430_1010787862
36Ga0075431_1001109093
37Ga0075420_1012915681
38Ga0075425_1016889612
39Ga0075429_1003773401
40Ga0075436_1011715842
41Ga0079219_115161551
42Ga0075419_101481282
43Ga0075435_1004146192
44Ga0105240_127066402
45Ga0075418_115543872
46Ga0075423_117061111
47Ga0123338_100213551
48Ga0126384_117158071
49Ga0126382_106938012
50Ga0126370_114748951
51Ga0105239_101256823
52Ga0134122_105229172
53Ga0134121_111088261
54Ga0134123_113150991
55Ga0137375_111245552
56Ga0137419_107973432
57Ga0137404_116234351
58Ga0126375_105667892
59Ga0126369_133732321
60Ga0157375_117064921
61Ga0075355_10458802
62Ga0163163_104763073
63Ga0157377_113174861
64Ga0137403_102462351
65Ga0132258_112846962
66Ga0184620_101879361
67Ga0190273_120783212
68Ga0193748_10277462
69Ga0193744_10199792
70Ga0193711_10209191
71Ga0193753_104181091
72Ga0193699_103506332
73Ga0212090_100504581
74Ga0207643_104143132
75Ga0207705_109562112
76Ga0207660_108525151
77Ga0207662_101259932
78Ga0207652_105144872
79Ga0207689_101865432
80Ga0207708_102240492
81Ga0207674_104445722
82Ga0209515_100023589
83Ga0209481_103185713
84Ga0209382_100286124
85Ga0268266_100077353
86Ga0268264_125976271
87Ga0302205_101024172
88Ga0302286_106774521
89Ga0311333_103881991
90Ga0311349_109746472
91Ga0311360_105079711
92Ga0302211_102277151
93Ga0307500_101248982
94Ga0302323_1001421864
95Ga0307469_110831362
96Ga0311351_102983612
97Ga0302321_1022742602
98Ga0302322_1002109403
99Ga0308175_1025893511
100Ga0326726_113474511
101Ga0370487_0028741_114_494
102Ga0370487_0080060_51_431
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 29.37%    β-sheet: 16.67%    Coil/Unstructured: 53.97%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

102030405060708090100110120MNADEDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHVTKVLDRAHGGSKTLAVAQKGAFRERSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAPDPGGPYRSequenceα-helicesβ-strandsCoilSS Conf. score
Powered by Feature Viewer


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
99.0%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Groundwater
Glacier Valley
Groundwater Sediment
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Agricultural Soil
Soil
Hardwood Forest Soil
Soil
Untreated Peat Soil
Natural And Restored Wetlands
Tropical Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Fen
Bog
Peat Soil
Arabidopsis Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Populus Rhizosphere
Corn Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Corn Rhizosphere
6.9%3.9%2.9%4.9%3.9%7.8%6.9%3.9%8.8%4.9%15.7%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0073692_106479513300005238SoilMNADEDLRAQLAAVREELGALRAQLDALTAARGLTMAGQVRCPGCGGRKLLHATKILDRAHAGAKTLAVAQKGGFRERSLGEFQVYICQGCGLVEWYVPDLSGLVANGETVRELDGTAPDPTGPYR*
Ga0074071_101008723300005258SoilMNADEDLRAQLAAVREELGALRAQLDALTATRGLTMAGQVRCPGCGGRKLLHATKILDRAHAGAKTLAVAQKGGFRERSLGEFQVYICQACGLVEWYVPDLSGLVANGETVRELDGTAPDPTGPYR*
Ga0074072_109014323300005260SoilMNADEDLRAQLAAVREELGALRAQLDALTAARGLTMAGQVRCPGCGGRKLLHATKILDRAHAGAKTLAVAQKGGFRERSLGEFQVYICQACGLVEWYVPDLSGLVANGETVRELDGTAPDPTGPYR*
Ga0070658_1118732223300005327Corn RhizospherePSLLRASYDAPMNADEDLRAQLAAVREELGAVRAQLDALTAARGLTMAGQVRCPGCGGRKLLHATKILDRAHAGAKTLAVAQKGGFRERSLGEFQVYICQGCGLVEWYVPDLSGLVANGETVRELDGSAPDPTGPYR*
Ga0070683_10013065133300005329Corn RhizosphereMNADEDLRAQLAAIREELGAVRAQLDALTAARGLTMAGQVRCPGCGGRKLLHATKILDRAHAGAKTLAVAQKGGFRERSLGEFQVYICQGCGLVEWYVPDLSGLVANGETVRELDGSAPDPTGPYR*
Ga0070690_10062133513300005330Switchgrass RhizospherePMNADEDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHVTKILDRADSGSKTLAVARTGGFRDRSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAPDPGGPYR*
Ga0066388_10407593423300005332Tropical Forest SoilMNADEDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHAKVLDRAHHSSSKTLALAQKGAFRERSIGEFQVYICQGCGLVEWYVPDLSGIVPDGETVREVDGSAHDPGGPYR*
Ga0068869_10072867523300005334Miscanthus RhizosphereMNADEDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHVAKVLDRADGWGPKTLAVAQTGRFRERSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAPDPGGPYR*
Ga0070691_1087995313300005341Corn, Switchgrass And Miscanthus RhizosphereARGRCPRLESPGLVGAVHAGTFASYDVPMNADEDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHVTKVLDRAHGGSKTLAVAQKGAFRERSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAPDPGGPYR*
Ga0070687_10004048033300005343Switchgrass RhizosphereMNADDDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHTKVLDRAHHSGSKTLALAQKGAFRERSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAPDPGGPYR*
Ga0070692_1081449613300005345Corn, Switchgrass And Miscanthus RhizosphereMNADEDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHVTKVLDRAHGGSKTLAVAQKGAFRERSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAPDPGGPYR*
Ga0070688_10046233123300005365Switchgrass RhizosphereMNADDDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHVTKVLDRAQGGSKTLALAQTGAFRERSIGAFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAPDPGGPYR*
Ga0070703_1048023413300005406Corn, Switchgrass And Miscanthus RhizosphereRNAAGRIRSAEVAAEVGAVHAGILASYDVPMNADEDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHVAKVLDRANGWGPKTLAVAQTGGFRERSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAPDPGGPYR*
Ga0070701_1093023923300005438Corn, Switchgrass And Miscanthus RhizosphereMNADEDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHVTKVLDRAQGGSKTLALAQTGAFRERSIGAFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAPDPGGPYR*
Ga0066687_1083023623300005454SoilPMNADEDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHATKVLDRADSVSKTLAVAQKGGFGHRSIGEFQVYICQGCGLVEWYVPDLSEIVVDGETVRELDGSAPDPGGPYR*
Ga0068867_10212845513300005459Miscanthus RhizosphereMNADEDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHATKVLDRADWGSKTLAVAQKEGFGKRSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAPDPGG
Ga0070707_10182853713300005468Corn, Switchgrass And Miscanthus RhizosphereASYDVPMNADEDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHVTKVLDRADGGTKTLAVAREGFFRERSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAPDPGGPYR*
Ga0070698_10089964223300005471Corn, Switchgrass And Miscanthus RhizosphereMNADEDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHVTKVLDRADGGAKTLAVAREGFFRERSIGEFQVYICQGCGLVEWYVSDLSGIVADGETVRELDGSAPDPGGPYR*
Ga0070679_10010973233300005530Corn RhizosphereQLDALTAARGLTMAGQVRCPGCGGRKLLHATKILDRAHAGAKTLAVAQKGGFRERSLGEFQVYICQGCGLVEWYVPDLSGLVANGETVRELDGTAPDPTGPYR*
Ga0070679_10045053733300005530Corn RhizosphereMNADEDLRAQLAAVREELGVLRAQLDALTTARGLTMAGQVRCPGCGGRKVLHATKVLDRKDGFPRTLAVAETAGFGHRSLGEFQVYICQGCGLVEWYVPDLSGIKVDGKTVRELDGSSPEPDGPYR*
Ga0070679_10081189623300005530Corn RhizosphereMNADEDLRAQLAAIREELGAVRAQLDALTAARGLTMAGQVRCPGCGGRKLLHATKILDRSHAGAKTLAVAQKGGFRERSLGEFQVYICQGCGLVEWYVPDLSGLVANGETVSELDGTAPDPTGPYR*
Ga0070684_10022820633300005535Corn RhizosphereMNADEDLRAQLAAVREELGAVRAQLDALTAARGLTMAGQVRCPGCGGRKLLHATKILDRAHAGAKTLAVAQKGGFRERSLGEFQVYICQGCGLVEWYVPDLSGLVANGETVRELDGSAPDPTGPYR*
Ga0070665_10058467323300005548Switchgrass RhizosphereMLRTRSVIVARRPGTVLGEAIAANCHCRAHSRSVATKLIRAGILASYDVPMNADEDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHVTKVLDRAHGGSKTLAVAQKGAFLERSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAPDPGGPYR*
Ga0068855_10040401123300005563Corn RhizosphereWPSLLPASYDAPMNADEDLRAQLAAVREELGAVRAQLDALTAARGLTMAGQVRCPGCGGRKLLHATKILDRSHAGAKTLAVAQKGGFRERSLGEFQVYICQGCGLVEWYVPDLSGLVANGETVSELDGTAPDPTGPYR*
Ga0070702_10125890513300005615Corn, Switchgrass And Miscanthus RhizosphereMNADEDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHVAKVLDRADGWGPKTLAVAQTGSFRERSIGEFQVYICQGCGLVEWYVPDLSGIVADGETV
Ga0066905_10061454313300005713Tropical Forest SoilMNADEDLRAQLAAVREELGAVRAQLDALTTARGLTMVVQVRCPGCGGRKLLHVTKVLDRANGGGSKTLAVAQTGAFRHSSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAPDPGGPYR*
Ga0068870_1099792423300005840Miscanthus RhizosphereGAVHAGTFASYDVPMNADEDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHVAKVLDRADGWGPKTLAVAQKGGFRERSIGEFQVYICEGCGLVEWYVPDLSGIVADGETVRELDGSAPDPGGPYR*
Ga0068860_10095455813300005843Switchgrass RhizosphereMNADEDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHTKVLDRAHHSGSKTLALAQKGAFRERSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAPDPGGPYR*
Ga0066651_1063078613300006031SoilMNADEDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHVTKVLDRSDNGATTLAVAREGFFRERSIGEFQVYICQGCGLVEWYVPDLS
Ga0079222_1222100413300006755Agricultural SoilMNADEDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHVTKVLDRANGGSKTLAVAQTGGFRHWSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAPDPGAPYR*
Ga0075428_10043593223300006844Populus RhizosphereMNADEDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHVTKVLDRADGGPKTLAVAREGFFRERSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAPHPGGPYR*
Ga0075421_10028254213300006845Populus RhizosphereMNADEDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHVTKVLDRADGGPKTLAVAREGFFRERSIGEFQVYICQGCGLVEWYVPDLSGIVADGE
Ga0075421_10113997613300006845Populus RhizosphereGPCPRLESPGLVGAVHAGILASYDVPMNADEDLRAQLAAVREELGAVRAQLDALTTARGLSMAGQVRCPGCGGRKLLHATKVLDRAHGGSKTLAVAQTGAFRERSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAPDLGGPYR*
Ga0075430_10037896713300006846Populus RhizosphereAGILASYDVPMNADEDLRAQLAAVREELGVVRAQLDALTTARGLIMAGQVRCPGCGGRKLLHVTKVLDRAHGGAKTLAVAQTGAFRERSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAPDLGGPYR*
Ga0075430_10107878623300006846Populus RhizosphereMNADEDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHATKVLDRAHAGAKTLAVAQTGAFRERSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAP
Ga0075431_10011090933300006847Populus RhizosphereMNADEDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHVTKVLDRADGGPKTLAVAREGFFRERSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAPDLGGPYR*
Ga0075420_10129156813300006853Populus RhizosphereMNADEDLRAQLAAVREELGAVRAQLDALTTARGLSMAGQVRCPGCGGRKLLHATKVLDRAHGGSKTLAVAQTGAFRERSIGEFQVYICQGCVLVEWYVPNLSGIVADGETVRELDG
Ga0075425_10168896123300006854Populus RhizosphereEELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHTKVLDRAHHSGSKTLALAQKGAFRERSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAPDPGGPYR*
Ga0075429_10037734013300006880Populus RhizosphereMNADEDLRAQLAAVREELGAVRAQLDALTTARGLSMAGQVRCPGCGGRKLLHATKVLDRAHGGSKTLAVAQKGAFRERSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSA
Ga0075436_10117158423300006914Populus RhizosphereELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHVTKVLDRADSSSKTLAVAQKGGFGHRSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAPDPGGPYR*
Ga0079219_1151615513300006954Agricultural SoilVYSWRPITSAELAAEVSADAALAGRCPRLESPGLVGAVHAGVLSSYDVPMNADEDLRAQLAAVREALGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHVTKVLDRADSSSKTLAVAQKGGFGHRSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAPDPGGPYR*
Ga0075419_1014812823300006969Populus RhizosphereMNADEDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHVTKVLDRADGGPKTLAVAREGFFRERSIGEFQVYICQGCGLVEWYVPDLSG
Ga0075435_10041461923300007076Populus RhizosphereMNADEDLRAELAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHVTKVLDRANGGSKTLAVAQTGGFRHWSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAPDPGGPYR*
Ga0105240_1270664023300009093Corn RhizosphereRAQLDALAAARGLTMAGQVRCPGCGGRKLLHATKILDRSHAGAKTLAVAQKGGFRERSLGEFQVYICQGCGLVEWYVPDLSGLVANGETVRELDGSAPDPTGPYR*
Ga0075418_1155438723300009100Populus RhizosphereMNADEDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHATKVLDRADGGPKTLAVAREGFFRERSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAPDPGGPYR*
Ga0075423_1170611113300009162Populus RhizosphereMNADEDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHVTKVLDRADGGPKTLAVAREGFFRERSIGEFQVYICQGCGLVEWYVPNLSGIVADGETVRELDGSAPDLGGPYR*
Ga0123338_1002135513300009686Glacier ValleyVNADEDLRAQLAAVREELGAVRAQLDALTTAPGLTMAGQVRCPGCGGRKLLHATKVLDRAHGGSRTLAVAQTGAFRERSIGEFQVYICQGCGLVEWYVPDLSGIVADGETIRELDGSVPDPGGPYR*
Ga0126384_1171580713300010046Tropical Forest SoilMNADEDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHVTKVLDRAHGGSKTLAVAQSAAFRHPSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAPDPGGPYR*
Ga0126382_1069380123300010047Tropical Forest SoilMNADEDLRAQLAAVREELGTVRAQLDALTTARALTMAGQVRCPGCGGRKLLHTKVLDRAHSGSKTLAVAQTGAFRERSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAPDPGGPYR*
Ga0126370_1147489513300010358Tropical Forest SoilLGPSGAALFVRPTIFASYDVPMNADEDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHVTKVLDRADSSSKTLAVAQKGGFGHRSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAPDPGGPYR*
Ga0105239_1012568233300010375Corn RhizosphereMNADEDLRAQLAAVREELGAVRAQLDALTAARGLTMAGQVRCPGCGGRKLLHATKILDRAHAGAKTLAVAQKGGFRERSLGEFQVYICQGCGLVEWYVPDLSGLVANGETVRELDGTAPDPTGPYR*
Ga0134122_1052291723300010400Terrestrial SoilMNDNEDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHVAKVLDRADGWGPKTLAVAQKGGFRDRSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAPDPGGPYR*
Ga0134121_1110882613300010401Terrestrial SoilVAAEVSADAALADAARERGVGGAVDAGVLAQYEVPMNADEDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHTKVLDRAHHSGSKTLALAQKGAFRERSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAPDPGGPYR*
Ga0134123_1131509913300010403Terrestrial SoilMNADEDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHVTKVLDRAQGGSKTLAVAQKGAFRERSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAPDPGGPYR*
Ga0137375_1112455523300012360Vadose Zone SoilMNSDEDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHVTKVLDRAQGGSKTLAVAQKGAFRERSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAPDPGGPYR*
Ga0137419_1079734323300012925Vadose Zone SoilMNADEDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGWKLLHATEVLDRAHGGSKTMAVAQTGAFRERSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAPDPGGPYR*
Ga0137404_1162343513300012929Vadose Zone SoilMNADEDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHVSKVLDRAQGGSKTLAVAQKGAFRERSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAPDPGG
Ga0126375_1056678923300012948Tropical Forest SoilMNADEDLRAQLAAVREELGAVRAQLDALTTARGLTMVGQVRCPGCGGRKLLHVTKVLDRANGGGSKTLAVAQKGAFRERSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAADPGGPYR*
Ga0126369_1337323213300012971Tropical Forest SoilAPQRITAAVEDGTSPGLVGAVDAGILASYDVPMNADEDLRAQLAAVREELGAVRAQLDALTTTRGLTMAGQVRCPGCGGRKLLHTKVLDRAHHSGSKTLAVAQKGAFRERSIGEFQVYICQGCGLVEWYVPDLSGIVADGESIRELDGSVPDPDGPYRQDLEEDPDRTDVVAAP
Ga0157375_1170649213300013308Miscanthus RhizosphereATTLFKSNPLASYDVPMNADEDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHVAKVLDRADGWGPKTLAVAQTGAFRERSIGEFQVYLCQGCGLVEWYVPDLSGIVADGETVRELDGSAPDPGGPYR*
Ga0075355_104588023300014322Natural And Restored WetlandsMNADEDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHATKVLDRADGGSKTLAVAQSAAFRHRSIGEFQVYICQGCGLVEWYVPDLSGIVVDGETVRELDGSAPDPAGPYR*
Ga0163163_1047630733300014325Switchgrass RhizosphereMNADEDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHVAKVLDRADGWGPKTLAVAQTGAFRERSIGEFQVYICQGCGLVEWYVPDLSGIAADGETVRELDGSATDPSSPYR
Ga0157377_1131748613300014745Miscanthus RhizosphereMNADEDLRVQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHVTKVLDRAQGGSKTLALAQTGAFRERSIGAFQVYICQGCGLVEWYVPDLSGIVADGETVREL
Ga0137403_1024623513300015264Vadose Zone SoilLIRHIVFFSAQRKEDVEAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHVSKVLDRAQGGSKTLAVAQKGAFRERSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAPDPGGPYR
Ga0132258_1128469623300015371Arabidopsis RhizosphereMNADEGLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHVTKVLDRAQGSSKTLAVAQTGAFRERSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAPDPGGPYR*
Ga0184620_1018793613300018051Groundwater SedimentVGAVHAGILASYDVPMNADEDLRTQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHATKVLDRADWGSKTLAVAQKGGFGKRSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAPDPGGPYR
Ga0190273_1207832123300018920SoilMNADEDLRAQLAAVRVELGAVRAQLDVLTARGSSMARQVRCPGCGGRKLLHASKVLVSAHGGGKTLAVSQKGGFRERSIGEFQVYICQGCGLVEWYVPDLSGIVADGDTVRELD
Ga0193748_102774623300019865SoilDEDLRAQLAAVREELGAVRAQLDALTTARGLTMAEQVRCPGCGGRKLLHVAKVLDRANGWGPKTLAVAQKGGFGKRSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAPDPGGPYR
Ga0193744_101997923300019874SoilMNADEDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHATKVLDRADGGSKTLAVAQKGGFGKRSIGEFQVYICQGCGLVEWYVPDLSGIMADGETVRELDGSAPDPGGPYR
Ga0193711_102091913300019997SoilMNADEDLRAQLAAVREELGAMRAQLDALTTARGLTMAGQVRCPGCGGRKLLHATKVLDRADSGSKTLAVAQKGGFGHRSIGEFQVYICQGCGLVEWYVPDLSGI
Ga0193753_1041810913300020034SoilVHSYDVPMNADEDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHVTKVLDRGQGGSKTLAVAQKGAFRERSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAPDPGGPYR
Ga0193699_1035063323300021363SoilRRCPRLESPGLVGAVHAGILASYDVPMNADEDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHVTKVLDRADGWGPKTLAVAQKGGFRERSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAPDPGGPYR
Ga0212090_1005045813300022561Glacier ValleyVNADEDLRAQLAAVREELGAVRAQLDALTTAPGLTMAGQVRCPGCGGRKLLHATKVLDRAHGGSRTLAVAQTGAFRERSIGEFQVYICQGCGLVEWYVPDLSGIVADGETIRELDGSVPDPGGPYR
Ga0207643_1041431323300025908Miscanthus RhizosphereSPTCGELYLASYDVPMNADEDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHVAKVLDRADGWGPKTLAVAQKGGFRERSIGEFQVYICEGCGLVEWYVPDLSGIVADGETVRELDGSAPHPGGPYR
Ga0207705_1095621123300025909Corn RhizospherePSLLRASYDAPMNADEDLRAQLAAVREELGAVRAQLDALTAARGLTMAGQVRCPGCGGRKLLHATKILDRAHAGAKTLAVAQKGGFRERSLGEFQVYICQGCGLVEWYVPDLSGLVANGETVRELDGSAPDPTGPYR
Ga0207660_1085251513300025917Corn RhizosphereVPMNADEDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHVAKVLDRANGWGPKTLAVAQTGGFRERSIGEFQVYICQGCGLVEWYVPDLSGLVANGETVRELDGTAPDPTGPYR
Ga0207662_1012599323300025918Switchgrass RhizosphereMNADDDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHVTKVLDRAQGGSKTLALAQTGAFRERSIGAFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAPDPGGPYR
Ga0207652_1051448723300025921Corn RhizosphereMNADEDLRAQLAAVREELGAVRAQLDALAAARGLTMAGQVRCPGCGGRKLLHATKILDRSHAGAKTLAVAQKGGFRERSLGEFQVYICQGCGLVEWYVPDLSGLVANGETVSELDGTAPDPTGPYR
Ga0207689_1018654323300025942Miscanthus RhizosphereMNADEDLRVQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHVAKVLDRADGWGPKTLAVAQTGRFRERSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAPDPGGPYR
Ga0207708_1022404923300026075Corn, Switchgrass And Miscanthus RhizosphereMNDNEDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHVTKVLDRAQGGSKTLALAQTGAFRERSIGAFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAPDPGGPYR
Ga0207674_1044457223300026116Corn RhizosphereMNADEDLRAQLAAVREELGAVRAQLDALTAARGLTMAGQVRCPGCGGRKLLHATKILDRAHAGAKTLAVAQKGGFRERSLGEFQVYICQGCGLVEWYVPDLSGLVANGETVRELDGSAPDPTGPYR
Ga0209515_1000235893300027835GroundwaterMNADEDLRAQLAAVREELGAVRAQLDALTTARGMTMAGQVRCPGCGGRKLLHVTKVLDRADGGSKTLAVAQKGGFGKRSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAPDPGGPYR
Ga0209481_1031857133300027880Populus RhizosphereGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHVTKVLDRAHGGAKTLAVAQTGAFRERSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAPDPGGPYR
Ga0209382_1002861243300027909Populus RhizosphereMNADEDLRAQLAAVREELGAVRAQLDALTTARGLSMAGQVRCPGCGGRKLLHATKVLDRAHGGSKTLAVAQTGAFRERSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAPDLGGPYR
Ga0268266_1000773533300028379Switchgrass RhizosphereMLRTRSVIVARRPGTVLGEAIAANCHCRAHSRSVATKLIRAGILASYDVPMNADEDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHVTKVLDRAHGGSKTLAVAQKGAFLERSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAPDPGGPYR
Ga0268264_1259762713300028381Switchgrass RhizosphereEELGAVRAQLHALATARGLTMARQVRCPGCGGRKLLHTKVLDRAHHSGSKTLALAQKGAFRERSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAPDPGGPYR
Ga0302205_1010241723300028739FenMNADEDLRAQLAAVREELGAVRAELDALTTARGLTMAGQVRCPGCGGRKLLHVTKVLDRADGGSKTLAVAQKGGFGKRSIGEFQVYICQGCGLVEWYVPDLSGIVADGETIRELDGSAPDPGGPYR
Ga0302286_1067745213300030047FenSYDVPMNADEDLRAQLAAVREELGAVRAELDALTTARGLTMAGQVRCPGCGGRKLLHVTKVLDRADWGSKTLAVAQKGGFGKRSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVQELDGSAPDPGDPYR
Ga0311333_1038819913300030114FenGAWSGAGDTCGILASYDVPMNADEDLRAQLAAVREELGAVRAELDALTTARGLTMAGQVRCPGCGGRKLLHVTKVLDRADWGSKTLAVAQKGGFGKRSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVQELDGSAPDPGDPYR
Ga0311349_1097464723300030294FenCGILASYDVPMNADEDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHVTKVLDRADGGSKTLAVAQKGGFGKRSIGEFQVYICQGCGLVEWYVPDLSGIVADGETIRELDGSAPDPGGPYR
Ga0311360_1050797113300030339BogMNADEDLRAQLAAVREELGAVRAELDALTTARGLTMAGQVRCPGCGGRKLLHVTKVLDRADWGSKTLAVAQKGGFGKRSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVQELDGSAPDPGDPYR
Ga0302211_1022771513300030491FenHLSRIVRRQRPRLHKPICGAWSGAGDTCGILASYDVPMNADEDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHVTKVLDRADGGSKTLAVAQKGGFGKRSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVQELDGSAPDPGDPYR
Ga0307500_1012489823300031198SoilMNADEDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHVAKVLDRADGWGPKTLAVAQKGGFRERSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAPDPGGPYR
Ga0302323_10014218643300031232FenRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHATKVLDRADGGSKTLAVAQKGGFGKRSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVQELDGSAPDPGDPYR
Ga0307469_1108313623300031720Hardwood Forest SoilVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHATKVLDRADWGSKTLAVAQKEGFGKRSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAPDPGGPYR
Ga0311351_1029836123300031722FenMNADEDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHVTKVLDRADGGSKTLAVAQKGGFGKRSIGEFQVYICQGCGLVEWYVPDLSGIVADGETIRELDGSAPDPGGPYR
Ga0302321_10227426023300031726FenMNADEDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHVTKVLDRADGGSKTLAVAQKGGFGKRSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAPDPNDPYR
Ga0302322_10021094033300031902FenMNADEDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHATKVLDRADGGSKTLAVAQKGGFGKRSIGEFQVYICQGCGLVEWYVPDLSGIVADGETIRELDGSAPDPGGPYR
Ga0308175_10258935113300031938SoilMNADEDLRAQLAAVREELGAVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHVTKVLDRAQGSSKTLAVAQTGAFRERSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSPPDSAGPYR
Ga0326726_1134745113300033433Peat SoilMNADEDLRAQLAAVREELGVVRAQLDALTTARGLTMAGQVRCPGCGGRKLLHVTKVLDRAHGGSKTLAVAQTGAFRERSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGSAP
Ga0370487_0028741_114_4943300034170Untreated Peat SoilMNAEEDLRAQLAAVREELGAVRAQLDALTTAPRLTMAGQVRCPGCGGRKLLHVTKVLDRADSGSKTLAIARKGTFRERSIGEFQVYICQGCGLVEWYVPDLSGIETDGETVRELDGSAPDPGGPYR
Ga0370487_0080060_51_4313300034170Untreated Peat SoilMNADEDLRAQLAAVREELGAMRAQLDALAAARGLTMAGQVRCPGCGGRKLLHVTKVLDRADGGSKTLAVAQKGGFGKRSIGEFQVYICQGCGLVEWYVPDLSGIVADGETVRELDGGAPDPGAPYR


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.