NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F100864

Metagenome / Metatranscriptome Family F100864

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F100864
Family Type Metagenome / Metatranscriptome
Number of Sequences 102
Average Sequence Length 37 residues
Representative Sequence MPFLMSFALEPEIVTLAWIDNASVQFPLNIYATKG
Number of Associated Samples 60
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 78.43 %
% of genes near scaffold ends (potentially truncated) 38.24 %
% of genes from short scaffolds (< 2000 bps) 85.29 %
Associated GOLD sequencing projects 60
AlphaFold2 3D model prediction Yes
3D model pTM-score0.30

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (65.686 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(41.176 % of family members)
Environment Ontology (ENVO) Unclassified
(40.196 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(52.941 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52
1Ga0070694_1016880272
2Ga0066681_106808932
3Ga0070685_110304702
4Ga0066697_106409791
5Ga0066695_102437852
6Ga0066695_102880011
7Ga0066707_109255202
8Ga0066704_107694022
9Ga0066698_107487642
10Ga0066706_104376482
11Ga0066656_103383832
12Ga0066653_102557101
13Ga0066653_107646672
14Ga0066665_114788372
15Ga0066659_101751172
16Ga0066659_105350662
17Ga0099794_102812502
18Ga0099795_104950381
19Ga0066710_1017310152
20Ga0111539_100949642
21Ga0111539_102185443
22Ga0111539_108940332
23Ga0075418_122370612
24Ga0066709_1001621411
25Ga0066709_1008377263
26Ga0111538_103220371
27Ga0134084_102580112
28Ga0134084_104001331
29Ga0134086_102977031
30Ga0134111_104675131
31Ga0134111_105179651
32Ga0134066_100340681
33Ga0134066_101606291
34Ga0134127_110516663
35Ga0137436_11046842
36Ga0137388_101436693
37Ga0137383_101862001
38Ga0137383_103710172
39Ga0137383_106341071
40Ga0137383_106845881
41Ga0137365_100968622
42Ga0137365_101355553
43Ga0137365_101724062
44Ga0137365_104883052
45Ga0137365_106185981
46Ga0137374_109143401
47Ga0137374_112749452
48Ga0137380_102278382
49Ga0137380_110338902
50Ga0137381_106317422
51Ga0137376_102371742
52Ga0137376_104411091
53Ga0137379_100218122
54Ga0137379_100350834
55Ga0137379_100631861
56Ga0137379_100640005
57Ga0137379_100902973
58Ga0137379_102282292
59Ga0137379_102539181
60Ga0137379_112268871
61Ga0137379_116863771
62Ga0137378_112178211
63Ga0137372_104663481
64Ga0137386_100902132
65Ga0137386_111134341
66Ga0137367_111030273
67Ga0137366_100894692
68Ga0137366_107533641
69Ga0137384_105705002
70Ga0137384_111816782
71Ga0137368_101237444
72Ga0137368_103536352
73Ga0137368_104954481
74Ga0137368_108625842
75Ga0137373_100887082
76Ga0134075_103654591
77Ga0134078_105529872
78Ga0134078_105653612
79Ga0134112_103861612
80Ga0184619_102192002
81Ga0184618_101917331
82Ga0184618_102080621
83Ga0184612_104557311
84Ga0066655_111128292
85Ga0190270_119932533
86Ga0066669_116117471
87Ga0066669_121283552
88Ga0210382_100113094
89Ga0210382_100500951
90Ga0210382_104641501
91Ga0222622_111348261
92Ga0207670_100237684
93Ga0207670_101301663
94Ga0207670_102542621
95Ga0207670_116620681
96Ga0209236_12080162
97Ga0209470_12985032
98Ga0209807_11127092
99Ga0209807_12104832
100Ga0209157_12342502
101Ga0308179_10051521
102Ga0370546_020602_157_264
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 36.51%    β-sheet: 0.00%    Coil/Unstructured: 63.49%
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Variant

5101520253035MPFLMSFALEPEIVTLAWIDNASVQFPLNIYATKGSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.30
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
65.7%34.3%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Groundwater Sediment
Soil
Groundwater Sediment
Groundwater Sediment
Soil
Vadose Zone Soil
Terrestrial Soil
Grasslands Soil
Soil
Grasslands Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Switchgrass Rhizosphere
Populus Rhizosphere
2.9%3.9%2.9%41.2%10.8%17.6%6.9%4.9%4.9%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0070694_10168802723300005444Corn, Switchgrass And Miscanthus RhizosphereGNGRGAMPFLMSFALEPEIVTLAWTDNASVQFPLNIYATKG*
Ga0066681_1068089323300005451SoilMPFLMSFALEPEIVTVAWIDNASVQFPLNIYATKGLTVLSQWN*
Ga0070685_1103047023300005466Switchgrass RhizosphereMPFIMSFAREPAIVTLAWSDSVSVAFPLNIDATKGLTRFEK
Ga0066697_1064097913300005540SoilMPFLMSFALEPEIVTLAWIDNASVQFPLNIYATKG
Ga0066695_1024378523300005553SoilMSFVLEPEIVTLAWIDNASVQFPLNIYATKEHSKRGTATTSI*
Ga0066695_1028800113300005553SoilMPFLMSFALEHEIVRLAWIDNAAVQFPLNIYATKGF
Ga0066707_1092552023300005556SoilMPFLMSFVLEPEIVTLAWIDNASVQFPLNIYAASSGKA*
Ga0066704_1076940223300005557SoilMPFLMSFALEHEIVTFAWIDNASVQFPLNIYATKGL
Ga0066698_1074876423300005558SoilMPFLMSLALEPEIVTLVDNAFVQFPLNIYATKGSTHLYLL*
Ga0066706_1043764823300005598SoilMPFLMSFALEHEIVTLAWIDNASVQFPLNIYATKG*
Ga0066656_1033838323300006034SoilNGRGAMPFLMSFALEPEIVTFAWIDNASVQFPLNIYATNG*
Ga0066653_1025571013300006791SoilMSFALEPEIVTLAWIDNASVHFPLNICATKGFKNGSR*
Ga0066653_1076466723300006791SoilMPFLMSFALEPEIMTLAWIDNASVQFLLNIYATKG*
Ga0066665_1147883723300006796SoilMPFLMSFALEPEIVALAWIDNAFVQFPLNSYATKGLPQ
Ga0066659_1017511723300006797SoilMPFLMSFALEPEIVTVAWIDNASVPFPLNVYATKG*
Ga0066659_1053506623300006797SoilRGAMPFLMSFALEPEIVTLAWIDNVPVQFPLNIYATKG*
Ga0099794_1028125023300007265Vadose Zone SoilMPFLMSFALEHEIVTFAWIDNASVQFPLNIYATKGFN*
Ga0099795_1049503813300007788Vadose Zone SoilMSFLMSFALEPEIVTLAWIDNASVQFPLNIYATKG*
Ga0066710_10173101523300009012Grasslands SoilMPFLMSFALEHEIVTLAWIDNASVQFPLNIYATKG
Ga0111539_1009496423300009094Populus RhizosphereMPFLMSFALEPEFMTLAWIDNASVQFPLNIYATKG*
Ga0111539_1021854433300009094Populus RhizosphereMPFLMSFALEHEIVTLAWIENAFAQFPINIHATKV*
Ga0111539_1089403323300009094Populus RhizosphereMPFLMIVALELEIMTFAWIDNASVQFPLNIYPTKG*
Ga0075418_1223706123300009100Populus RhizosphereAMPFLMSFALEPEIVTLAWIHNASVQFPLNIYATKG*
Ga0066709_10016214113300009137Grasslands SoilMPFLMSFALEPEIVTFAWIDNASVQFPLNIYATNG*
Ga0066709_10083772633300009137Grasslands SoilMLFLMSFALEPEIVTVAWIDNASVPFPLNVYATKG*
Ga0111538_1032203713300009156Populus RhizosphereMPFLMSFAPEPEIVTFAWIDNASVQFPLNIYATKG*
Ga0134084_1025801123300010322Grasslands SoilMPFLMSFALEPEMVTLAWIDNDSVQFPLNIYATKGVIQIASA*
Ga0134084_1040013313300010322Grasslands SoilMSFLMSFALEPEIVTLAWIDNAPVQFPLNIYATKG*
Ga0134086_1029770313300010323Grasslands SoilMSFLMSFAMEPEIVPLAWIDNASVQFPLNIYATKG
Ga0134111_1046751313300010329Grasslands SoilMPFLMSFALEPEIVTLAWIDNISVQFPLNIYPTKGRARS
Ga0134111_1051796513300010329Grasslands SoilMPFLMSFALEPEIVTLTWIDNASVQISLNIYATEE*
Ga0134066_1003406813300010364Grasslands SoilMPFLMSFALEPEILTLAWIDNASVQFPLNIYATKE*
Ga0134066_1016062913300010364Grasslands SoilMPFLMIVALELEIMTFAWIDNASVQFPLNIYATKG*
Ga0134127_1105166633300010399Terrestrial SoilMPSLTSLALEPEIMTLAWIDNASVQFPLNIYATLGF
Ga0137436_110468423300011423SoilMPFLMSFALEPEIMTLAWIDNASVQFPLNIYATKG*
Ga0137388_1014366933300012189Vadose Zone SoilMPFLMSFALEPEIVTLAKIDNVSLQFPLNLYATKGCT*
Ga0137383_1018620013300012199Vadose Zone SoilGRGAMSFLMSFALEPEIVTLAWIDNASVQFPLNIYATKG*
Ga0137383_1037101723300012199Vadose Zone SoilMPFLMSFALEPEIVTVAWIDNASVQFPLNIYAAKGLTYG*
Ga0137383_1063410713300012199Vadose Zone SoilMPFLMSFALGHEIVMVAWIDNASVQFPLNIYATKG*
Ga0137383_1068458813300012199Vadose Zone SoilMPFLMSFALEPEIVALAWIDNGSVQFSLNISATKG*
Ga0137365_1009686223300012201Vadose Zone SoilMPFLMSFVLEPEIVTLAWIDNASVQFPLNIYSTSSGKA*
Ga0137365_1013555533300012201Vadose Zone SoilMPFLMSFVLEPEIVTLAWIDNASVQFLLNIYATKE*
Ga0137365_1017240623300012201Vadose Zone SoilMPFLVSFALEPEIVTMAWIENASVHFPLNIYATKG*
Ga0137365_1048830523300012201Vadose Zone SoilMSFALEPEIVTLAWIDNASVQFPLNIYATLGFTFQGFN*
Ga0137365_1061859813300012201Vadose Zone SoilMPFLMSLALEPEIMTLAWIDNASVQFPLNIYATKG*
Ga0137374_1091434013300012204Vadose Zone SoilNGRGEMPFLMSFVLEHEIITFAWIANAFVQFPLNFYATKG*
Ga0137374_1127494523300012204Vadose Zone SoilMSFLMSFALEHEIVTLAWADNASVQFPLNIYATKRLIGAIFGI
Ga0137380_1022783823300012206Vadose Zone SoilMPFLMSFALEHEIVTLAWIDNASVQFPLNIYPTKGFN*
Ga0137380_1103389023300012206Vadose Zone SoilPFLMSFAMEPEIVTLAWIDNASVQFPLNIYATKG*
Ga0137381_1063174223300012207Vadose Zone SoilMPFAMSFALEHEILTLTWIDNASVQISLNIYATEE*
Ga0137376_1023717423300012208Vadose Zone SoilMPFLMSFALEHEIVTFAWIDNASVQFPLNIYATKG*
Ga0137376_1044110913300012208Vadose Zone SoilMPFLMSFALEHEIVTLAWIDNASVQFPLNIYANEG*
Ga0137379_1002181223300012209Vadose Zone SoilMSFLMSFALEPEIVTLAWIDNASVQFPLNIYATKGLIPR*
Ga0137379_1003508343300012209Vadose Zone SoilMPFSMSFALEHEIVTLAWIDNASVQFPLNIYATKG*
Ga0137379_1006318613300012209Vadose Zone SoilMPFLMSFALEHEIVTFAWIDNAFVQFPLNFYATKG
Ga0137379_1006400053300012209Vadose Zone SoilMPFLMSFALEHEIVTFALIDNASVQFPLNIYATKG*
Ga0137379_1009029733300012209Vadose Zone SoilMRFLMSFALEPEIVALAWIENASVQFPFNIYATKG*
Ga0137379_1022822923300012209Vadose Zone SoilMSLLMSFAPEPEIVTLAWIDNASVQFQLNIYATKEHSKRGTATTSI*
Ga0137379_1025391813300012209Vadose Zone SoilGNGRGAMPLLMSFALQYESVTFAWIDNASVQFPLNIYATKG*
Ga0137379_1122688713300012209Vadose Zone SoilRGAMPFLMSFALEHEIVTLAWVDNASVQFPLNIYATKG*
Ga0137379_1168637713300012209Vadose Zone SoilGRGEMPFLKSFALEHEIVTFAWIDNAFVQFPLNFYATKG*
Ga0137378_1121782113300012210Vadose Zone SoilAMSSLMSFALEPEIVTLAWIDNASVQFPLNIYATKG*
Ga0137372_1046634813300012350Vadose Zone SoilMPFLMSFALEPEIVTLAWIDNVSVQFPLNVYATKG*
Ga0137386_1009021323300012351Vadose Zone SoilMPLLMSFALQYESVTFAWIDNASVQFPLNIYATKG*
Ga0137386_1111343413300012351Vadose Zone SoilMSFLMSFALEPEIVTLAWIDNGSVQFALNIYATKGFS
Ga0137367_1110302733300012353Vadose Zone SoilMPFLMSFALEHEIVTLAWVDNASVQFPLNIYATKGLNIPRFVG*
Ga0137366_1008946923300012354Vadose Zone SoilMSFALEPEIVTLTLIDNASVQFPLNIYSTSSGKA*
Ga0137366_1075336413300012354Vadose Zone SoilGAMPFVMSFALEHEIVTLAWIDNASVEFPLNNYATKG*
Ga0137384_1057050023300012357Vadose Zone SoilLMSFALEHEIVTFAWIDNASVQFPLNIYATKVFRLPF*
Ga0137384_1118167823300012357Vadose Zone SoilMPFLMSFALEHEIVTFAWIDNAPVQFTLNIYATKG*
Ga0137368_1012374443300012358Vadose Zone SoilEMPFLMSFVLEHEIITFAWIANAFVQFPLNFYATKG*
Ga0137368_1035363523300012358Vadose Zone SoilMPFLMSFALEHEFVTFAWIDNDSVHFPLNFHTTKGF
Ga0137368_1049544813300012358Vadose Zone SoilMPFLMSFALEHEILTLAWIDNASVQFPLNVYATKG*
Ga0137368_1086258423300012358Vadose Zone SoilMSFLMSFALEPEIVTFAWIDNASVQFPLNIYATKRFILPH*
Ga0137373_1008870823300012532Vadose Zone SoilMPFLMSFALQHAIVTLAWIDNASVQFPLNIYATKGFPCVVSLLK*
Ga0134075_1036545913300014154Grasslands SoilMSFLMSFALEPEIVTLAWIENASVQFPLNIYATKG*
Ga0134078_1055298723300014157Grasslands SoilMPFLMSFALEHEIVTFAWIDNASVQFPLNIDATKGYSYF*
Ga0134078_1056536123300014157Grasslands SoilMPFLMSFALEREIVTLAWIDYVSVQFPLNIYATKG*
Ga0134112_1038616123300017656Grasslands SoilMPFLMSFVLEPEIVTLAWIDNASVQFPLNIYAASSGKA
Ga0184619_1021920023300018061Groundwater SedimentMPFLMSFALEHEVVTFAWIDDASVQFPLNIYATKG
Ga0184618_1019173313300018071Groundwater SedimentMPFLMSFALEPEIMTLAWIDNASVQFPLNIYATKGLTRAD
Ga0184618_1020806213300018071Groundwater SedimentMPFLMSFALEHEIVTFAWIDNASVQFPLNIYATKGLLLW
Ga0184612_1045573113300018078Groundwater SedimentMPFLMSFALEHEIVTFAWIDNASVQFPLNIYATKG
Ga0066655_1111282923300018431Grasslands SoilMSFLMSFALEPEIVTLAWIDNASVQFPLNIYATKG
Ga0190270_1199325333300018469SoilMPFLMSFALEPEIMTLAWIDNASVQFLLNIYATKG
Ga0066669_1161174713300018482Grasslands SoilMPFLMSFALEHEIVTLAWIDNASVQFPLNIYATKA
Ga0066669_1212835523300018482Grasslands SoilMSFLVSFALEPEIVTLAWIDNDSVQFPLNFYATKG
Ga0210382_1001130943300021080Groundwater SedimentMPFLMSFALEHEIVTIAWLDNASVQFPLNIYATKE
Ga0210382_1005009513300021080Groundwater SedimentMPFVMSFALEHEIVTLTWIDNASVQFPLNIYATKGIT
Ga0210382_1046415013300021080Groundwater SedimentMPFLMSFALEHEIVTFAWIDNASVQFPLNICATKGL
Ga0222622_1113482613300022756Groundwater SedimentGNGRGAMPFLMSFALEHEIVTFAWIDNASVQFPLNIYATKG
Ga0207670_1002376843300025936Switchgrass RhizosphereMPSLMSFALEHEIVTFAWIDNASVQLPLNIYATKG
Ga0207670_1013016633300025936Switchgrass RhizosphereMPFLMSFALEHEIVTLAWIENAFAQFPINIHATKV
Ga0207670_1025426213300025936Switchgrass RhizosphereMPFLMSFALEHEIVTFAWIDNASVQFALTIYATKELFFEISR
Ga0207670_1166206813300025936Switchgrass RhizosphereMPFFMNFALEHEIVTLAWIDNASVQFPLNIYATKGFT
Ga0209236_120801623300026298Grasslands SoilMPFLMSFALEPEIVTIAWIDKASVQFPLTIYATKG
Ga0209470_129850323300026324SoilFAMEPEIVTLAWIDNASVQFQLNIYATKEHSKRGTATTSI
Ga0209807_111270923300026530SoilMPFLMSFALEHEIVTLAWIDNASVQFPLNIYATKAFTD
Ga0209807_121048323300026530SoilMPFLMSFALEREIVTLAWIDYVSVQFPLNIYATKG
Ga0209157_123425023300026537SoilMSLLMSFAPEPEIVTLAWIDNASVQFPLNIYATKGYSKRGTA
Ga0308179_100515213300031424SoilMSFLMRFALEHEIVTLAWIDNASVQFPLNIYATKGLIQK
Ga0370546_020602_157_2643300034681SoilMPFLMSFALEPEIMTLAWIDNASVQFPPNIYATGG


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