Basic Information | |
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Family ID | F100864 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 102 |
Average Sequence Length | 37 residues |
Representative Sequence | MPFLMSFALEPEIVTLAWIDNASVQFPLNIYATKG |
Number of Associated Samples | 60 |
Number of Associated Scaffolds | 102 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 78.43 % |
% of genes near scaffold ends (potentially truncated) | 38.24 % |
% of genes from short scaffolds (< 2000 bps) | 85.29 % |
Associated GOLD sequencing projects | 60 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.30 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (65.686 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (41.176 % of family members) |
Environment Ontology (ENVO) | Unclassified (40.196 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (52.941 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 36.51% β-sheet: 0.00% Coil/Unstructured: 63.49% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.30 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Groundwater Sediment Soil Groundwater Sediment Groundwater Sediment Soil Vadose Zone Soil Terrestrial Soil Grasslands Soil Soil Grasslands Soil Corn, Switchgrass And Miscanthus Rhizosphere Switchgrass Rhizosphere Populus Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
Ga0070694_1016880272 | 3300005444 | Corn, Switchgrass And Miscanthus Rhizosphere | GNGRGAMPFLMSFALEPEIVTLAWTDNASVQFPLNIYATKG* |
Ga0066681_106808932 | 3300005451 | Soil | MPFLMSFALEPEIVTVAWIDNASVQFPLNIYATKGLTVLSQWN* |
Ga0070685_110304702 | 3300005466 | Switchgrass Rhizosphere | MPFIMSFAREPAIVTLAWSDSVSVAFPLNIDATKGLTRFEK |
Ga0066697_106409791 | 3300005540 | Soil | MPFLMSFALEPEIVTLAWIDNASVQFPLNIYATKG |
Ga0066695_102437852 | 3300005553 | Soil | MSFVLEPEIVTLAWIDNASVQFPLNIYATKEHSKRGTATTSI* |
Ga0066695_102880011 | 3300005553 | Soil | MPFLMSFALEHEIVRLAWIDNAAVQFPLNIYATKGF |
Ga0066707_109255202 | 3300005556 | Soil | MPFLMSFVLEPEIVTLAWIDNASVQFPLNIYAASSGKA* |
Ga0066704_107694022 | 3300005557 | Soil | MPFLMSFALEHEIVTFAWIDNASVQFPLNIYATKGL |
Ga0066698_107487642 | 3300005558 | Soil | MPFLMSLALEPEIVTLVDNAFVQFPLNIYATKGSTHLYLL* |
Ga0066706_104376482 | 3300005598 | Soil | MPFLMSFALEHEIVTLAWIDNASVQFPLNIYATKG* |
Ga0066656_103383832 | 3300006034 | Soil | NGRGAMPFLMSFALEPEIVTFAWIDNASVQFPLNIYATNG* |
Ga0066653_102557101 | 3300006791 | Soil | MSFALEPEIVTLAWIDNASVHFPLNICATKGFKNGSR* |
Ga0066653_107646672 | 3300006791 | Soil | MPFLMSFALEPEIMTLAWIDNASVQFLLNIYATKG* |
Ga0066665_114788372 | 3300006796 | Soil | MPFLMSFALEPEIVALAWIDNAFVQFPLNSYATKGLPQ |
Ga0066659_101751172 | 3300006797 | Soil | MPFLMSFALEPEIVTVAWIDNASVPFPLNVYATKG* |
Ga0066659_105350662 | 3300006797 | Soil | RGAMPFLMSFALEPEIVTLAWIDNVPVQFPLNIYATKG* |
Ga0099794_102812502 | 3300007265 | Vadose Zone Soil | MPFLMSFALEHEIVTFAWIDNASVQFPLNIYATKGFN* |
Ga0099795_104950381 | 3300007788 | Vadose Zone Soil | MSFLMSFALEPEIVTLAWIDNASVQFPLNIYATKG* |
Ga0066710_1017310152 | 3300009012 | Grasslands Soil | MPFLMSFALEHEIVTLAWIDNASVQFPLNIYATKG |
Ga0111539_100949642 | 3300009094 | Populus Rhizosphere | MPFLMSFALEPEFMTLAWIDNASVQFPLNIYATKG* |
Ga0111539_102185443 | 3300009094 | Populus Rhizosphere | MPFLMSFALEHEIVTLAWIENAFAQFPINIHATKV* |
Ga0111539_108940332 | 3300009094 | Populus Rhizosphere | MPFLMIVALELEIMTFAWIDNASVQFPLNIYPTKG* |
Ga0075418_122370612 | 3300009100 | Populus Rhizosphere | AMPFLMSFALEPEIVTLAWIHNASVQFPLNIYATKG* |
Ga0066709_1001621411 | 3300009137 | Grasslands Soil | MPFLMSFALEPEIVTFAWIDNASVQFPLNIYATNG* |
Ga0066709_1008377263 | 3300009137 | Grasslands Soil | MLFLMSFALEPEIVTVAWIDNASVPFPLNVYATKG* |
Ga0111538_103220371 | 3300009156 | Populus Rhizosphere | MPFLMSFAPEPEIVTFAWIDNASVQFPLNIYATKG* |
Ga0134084_102580112 | 3300010322 | Grasslands Soil | MPFLMSFALEPEMVTLAWIDNDSVQFPLNIYATKGVIQIASA* |
Ga0134084_104001331 | 3300010322 | Grasslands Soil | MSFLMSFALEPEIVTLAWIDNAPVQFPLNIYATKG* |
Ga0134086_102977031 | 3300010323 | Grasslands Soil | MSFLMSFAMEPEIVPLAWIDNASVQFPLNIYATKG |
Ga0134111_104675131 | 3300010329 | Grasslands Soil | MPFLMSFALEPEIVTLAWIDNISVQFPLNIYPTKGRARS |
Ga0134111_105179651 | 3300010329 | Grasslands Soil | MPFLMSFALEPEIVTLTWIDNASVQISLNIYATEE* |
Ga0134066_100340681 | 3300010364 | Grasslands Soil | MPFLMSFALEPEILTLAWIDNASVQFPLNIYATKE* |
Ga0134066_101606291 | 3300010364 | Grasslands Soil | MPFLMIVALELEIMTFAWIDNASVQFPLNIYATKG* |
Ga0134127_110516663 | 3300010399 | Terrestrial Soil | MPSLTSLALEPEIMTLAWIDNASVQFPLNIYATLGF |
Ga0137436_11046842 | 3300011423 | Soil | MPFLMSFALEPEIMTLAWIDNASVQFPLNIYATKG* |
Ga0137388_101436693 | 3300012189 | Vadose Zone Soil | MPFLMSFALEPEIVTLAKIDNVSLQFPLNLYATKGCT* |
Ga0137383_101862001 | 3300012199 | Vadose Zone Soil | GRGAMSFLMSFALEPEIVTLAWIDNASVQFPLNIYATKG* |
Ga0137383_103710172 | 3300012199 | Vadose Zone Soil | MPFLMSFALEPEIVTVAWIDNASVQFPLNIYAAKGLTYG* |
Ga0137383_106341071 | 3300012199 | Vadose Zone Soil | MPFLMSFALGHEIVMVAWIDNASVQFPLNIYATKG* |
Ga0137383_106845881 | 3300012199 | Vadose Zone Soil | MPFLMSFALEPEIVALAWIDNGSVQFSLNISATKG* |
Ga0137365_100968622 | 3300012201 | Vadose Zone Soil | MPFLMSFVLEPEIVTLAWIDNASVQFPLNIYSTSSGKA* |
Ga0137365_101355553 | 3300012201 | Vadose Zone Soil | MPFLMSFVLEPEIVTLAWIDNASVQFLLNIYATKE* |
Ga0137365_101724062 | 3300012201 | Vadose Zone Soil | MPFLVSFALEPEIVTMAWIENASVHFPLNIYATKG* |
Ga0137365_104883052 | 3300012201 | Vadose Zone Soil | MSFALEPEIVTLAWIDNASVQFPLNIYATLGFTFQGFN* |
Ga0137365_106185981 | 3300012201 | Vadose Zone Soil | MPFLMSLALEPEIMTLAWIDNASVQFPLNIYATKG* |
Ga0137374_109143401 | 3300012204 | Vadose Zone Soil | NGRGEMPFLMSFVLEHEIITFAWIANAFVQFPLNFYATKG* |
Ga0137374_112749452 | 3300012204 | Vadose Zone Soil | MSFLMSFALEHEIVTLAWADNASVQFPLNIYATKRLIGAIFGI |
Ga0137380_102278382 | 3300012206 | Vadose Zone Soil | MPFLMSFALEHEIVTLAWIDNASVQFPLNIYPTKGFN* |
Ga0137380_110338902 | 3300012206 | Vadose Zone Soil | PFLMSFAMEPEIVTLAWIDNASVQFPLNIYATKG* |
Ga0137381_106317422 | 3300012207 | Vadose Zone Soil | MPFAMSFALEHEILTLTWIDNASVQISLNIYATEE* |
Ga0137376_102371742 | 3300012208 | Vadose Zone Soil | MPFLMSFALEHEIVTFAWIDNASVQFPLNIYATKG* |
Ga0137376_104411091 | 3300012208 | Vadose Zone Soil | MPFLMSFALEHEIVTLAWIDNASVQFPLNIYANEG* |
Ga0137379_100218122 | 3300012209 | Vadose Zone Soil | MSFLMSFALEPEIVTLAWIDNASVQFPLNIYATKGLIPR* |
Ga0137379_100350834 | 3300012209 | Vadose Zone Soil | MPFSMSFALEHEIVTLAWIDNASVQFPLNIYATKG* |
Ga0137379_100631861 | 3300012209 | Vadose Zone Soil | MPFLMSFALEHEIVTFAWIDNAFVQFPLNFYATKG |
Ga0137379_100640005 | 3300012209 | Vadose Zone Soil | MPFLMSFALEHEIVTFALIDNASVQFPLNIYATKG* |
Ga0137379_100902973 | 3300012209 | Vadose Zone Soil | MRFLMSFALEPEIVALAWIENASVQFPFNIYATKG* |
Ga0137379_102282292 | 3300012209 | Vadose Zone Soil | MSLLMSFAPEPEIVTLAWIDNASVQFQLNIYATKEHSKRGTATTSI* |
Ga0137379_102539181 | 3300012209 | Vadose Zone Soil | GNGRGAMPLLMSFALQYESVTFAWIDNASVQFPLNIYATKG* |
Ga0137379_112268871 | 3300012209 | Vadose Zone Soil | RGAMPFLMSFALEHEIVTLAWVDNASVQFPLNIYATKG* |
Ga0137379_116863771 | 3300012209 | Vadose Zone Soil | GRGEMPFLKSFALEHEIVTFAWIDNAFVQFPLNFYATKG* |
Ga0137378_112178211 | 3300012210 | Vadose Zone Soil | AMSSLMSFALEPEIVTLAWIDNASVQFPLNIYATKG* |
Ga0137372_104663481 | 3300012350 | Vadose Zone Soil | MPFLMSFALEPEIVTLAWIDNVSVQFPLNVYATKG* |
Ga0137386_100902132 | 3300012351 | Vadose Zone Soil | MPLLMSFALQYESVTFAWIDNASVQFPLNIYATKG* |
Ga0137386_111134341 | 3300012351 | Vadose Zone Soil | MSFLMSFALEPEIVTLAWIDNGSVQFALNIYATKGFS |
Ga0137367_111030273 | 3300012353 | Vadose Zone Soil | MPFLMSFALEHEIVTLAWVDNASVQFPLNIYATKGLNIPRFVG* |
Ga0137366_100894692 | 3300012354 | Vadose Zone Soil | MSFALEPEIVTLTLIDNASVQFPLNIYSTSSGKA* |
Ga0137366_107533641 | 3300012354 | Vadose Zone Soil | GAMPFVMSFALEHEIVTLAWIDNASVEFPLNNYATKG* |
Ga0137384_105705002 | 3300012357 | Vadose Zone Soil | LMSFALEHEIVTFAWIDNASVQFPLNIYATKVFRLPF* |
Ga0137384_111816782 | 3300012357 | Vadose Zone Soil | MPFLMSFALEHEIVTFAWIDNAPVQFTLNIYATKG* |
Ga0137368_101237444 | 3300012358 | Vadose Zone Soil | EMPFLMSFVLEHEIITFAWIANAFVQFPLNFYATKG* |
Ga0137368_103536352 | 3300012358 | Vadose Zone Soil | MPFLMSFALEHEFVTFAWIDNDSVHFPLNFHTTKGF |
Ga0137368_104954481 | 3300012358 | Vadose Zone Soil | MPFLMSFALEHEILTLAWIDNASVQFPLNVYATKG* |
Ga0137368_108625842 | 3300012358 | Vadose Zone Soil | MSFLMSFALEPEIVTFAWIDNASVQFPLNIYATKRFILPH* |
Ga0137373_100887082 | 3300012532 | Vadose Zone Soil | MPFLMSFALQHAIVTLAWIDNASVQFPLNIYATKGFPCVVSLLK* |
Ga0134075_103654591 | 3300014154 | Grasslands Soil | MSFLMSFALEPEIVTLAWIENASVQFPLNIYATKG* |
Ga0134078_105529872 | 3300014157 | Grasslands Soil | MPFLMSFALEHEIVTFAWIDNASVQFPLNIDATKGYSYF* |
Ga0134078_105653612 | 3300014157 | Grasslands Soil | MPFLMSFALEREIVTLAWIDYVSVQFPLNIYATKG* |
Ga0134112_103861612 | 3300017656 | Grasslands Soil | MPFLMSFVLEPEIVTLAWIDNASVQFPLNIYAASSGKA |
Ga0184619_102192002 | 3300018061 | Groundwater Sediment | MPFLMSFALEHEVVTFAWIDDASVQFPLNIYATKG |
Ga0184618_101917331 | 3300018071 | Groundwater Sediment | MPFLMSFALEPEIMTLAWIDNASVQFPLNIYATKGLTRAD |
Ga0184618_102080621 | 3300018071 | Groundwater Sediment | MPFLMSFALEHEIVTFAWIDNASVQFPLNIYATKGLLLW |
Ga0184612_104557311 | 3300018078 | Groundwater Sediment | MPFLMSFALEHEIVTFAWIDNASVQFPLNIYATKG |
Ga0066655_111128292 | 3300018431 | Grasslands Soil | MSFLMSFALEPEIVTLAWIDNASVQFPLNIYATKG |
Ga0190270_119932533 | 3300018469 | Soil | MPFLMSFALEPEIMTLAWIDNASVQFLLNIYATKG |
Ga0066669_116117471 | 3300018482 | Grasslands Soil | MPFLMSFALEHEIVTLAWIDNASVQFPLNIYATKA |
Ga0066669_121283552 | 3300018482 | Grasslands Soil | MSFLVSFALEPEIVTLAWIDNDSVQFPLNFYATKG |
Ga0210382_100113094 | 3300021080 | Groundwater Sediment | MPFLMSFALEHEIVTIAWLDNASVQFPLNIYATKE |
Ga0210382_100500951 | 3300021080 | Groundwater Sediment | MPFVMSFALEHEIVTLTWIDNASVQFPLNIYATKGIT |
Ga0210382_104641501 | 3300021080 | Groundwater Sediment | MPFLMSFALEHEIVTFAWIDNASVQFPLNICATKGL |
Ga0222622_111348261 | 3300022756 | Groundwater Sediment | GNGRGAMPFLMSFALEHEIVTFAWIDNASVQFPLNIYATKG |
Ga0207670_100237684 | 3300025936 | Switchgrass Rhizosphere | MPSLMSFALEHEIVTFAWIDNASVQLPLNIYATKG |
Ga0207670_101301663 | 3300025936 | Switchgrass Rhizosphere | MPFLMSFALEHEIVTLAWIENAFAQFPINIHATKV |
Ga0207670_102542621 | 3300025936 | Switchgrass Rhizosphere | MPFLMSFALEHEIVTFAWIDNASVQFALTIYATKELFFEISR |
Ga0207670_116620681 | 3300025936 | Switchgrass Rhizosphere | MPFFMNFALEHEIVTLAWIDNASVQFPLNIYATKGFT |
Ga0209236_12080162 | 3300026298 | Grasslands Soil | MPFLMSFALEPEIVTIAWIDKASVQFPLTIYATKG |
Ga0209470_12985032 | 3300026324 | Soil | FAMEPEIVTLAWIDNASVQFQLNIYATKEHSKRGTATTSI |
Ga0209807_11127092 | 3300026530 | Soil | MPFLMSFALEHEIVTLAWIDNASVQFPLNIYATKAFTD |
Ga0209807_12104832 | 3300026530 | Soil | MPFLMSFALEREIVTLAWIDYVSVQFPLNIYATKG |
Ga0209157_12342502 | 3300026537 | Soil | MSLLMSFAPEPEIVTLAWIDNASVQFPLNIYATKGYSKRGTA |
Ga0308179_10051521 | 3300031424 | Soil | MSFLMRFALEHEIVTLAWIDNASVQFPLNIYATKGLIQK |
Ga0370546_020602_157_264 | 3300034681 | Soil | MPFLMSFALEPEIMTLAWIDNASVQFPPNIYATGG |
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