Basic Information | |
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Family ID | F100717 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 102 |
Average Sequence Length | 52 residues |
Representative Sequence | MNDLIEMIEDLETISTMTMHPALEETIERILTKYEERKDDLEAEMERQYEMEV |
Number of Associated Samples | 67 |
Number of Associated Scaffolds | 102 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 84.31 % |
% of genes near scaffold ends (potentially truncated) | 38.24 % |
% of genes from short scaffolds (< 2000 bps) | 85.29 % |
Associated GOLD sequencing projects | 58 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.62 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (60.784 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh (53.922 % of family members) |
Environment Ontology (ENVO) | Unclassified (53.922 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (94.118 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 60.49% β-sheet: 0.00% Coil/Unstructured: 39.51% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.62 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Marine Marine Plankton Aqueous Seawater Freshwater To Marine Saline Gradient Marine Salt Marsh Marine Estuarine Water Marine Water Pond Water Water |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
ACM24_10607144 | 3300001833 | Marine Plankton | MKELIEMIEDLETIQTLVNHPALEDTIERILEKYEERKDAWEAEMERQ |
JGI26083J51738_101264112 | 3300003621 | Marine | MNDLLEMIEDLETIQTMTMHPALEETIERILTKYDQRREDLEADMA |
Ga0068515_1039445 | 3300004829 | Marine Water | MNDILEMIEDLETIQTLTMHPALDETVERILTKYEQRKDDLEAEMERQYEMEV* |
Ga0068514_10482272 | 3300004941 | Marine Water | MNDLLEMIEDLETISTLTMHPALDETVERILTKYEQRKDDLEAEMERQYEMEV* |
Ga0070749_101139717 | 3300006802 | Aqueous | MQELLEMIEDLETIQTLTSHPALEETIERILEKYEVRKIELEEDME |
Ga0099849_11181631 | 3300007539 | Aqueous | MQELLEMIEDLETISTMTMHPALEETIERILQKYEQRKEDLEADLERQYELFKEELNF* |
Ga0099849_11628181 | 3300007539 | Aqueous | MQELLEMIEDLETIQTLTMHPALEETIERILQKYEERKDDLEAEMERQYEMEFAGVTRIL |
Ga0099849_13357343 | 3300007539 | Aqueous | MNDLIEMIEDLETISTMTMHPALEETIERILQKYEERKDDLEAEMERQYEMGV* |
Ga0102948_11171003 | 3300007623 | Water | MNDLIEMIEDLETISTMTMHPALEETIERILQKYEQRQADLEAEMERQFEMEV* |
Ga0102951_11475662 | 3300007725 | Water | MNDLIEMIEDLETIQTLTNHPALEETIERILQKYDQRKEDLEAEMERQFEMF* |
Ga0102954_10919515 | 3300007778 | Water | MNDLIEMIEDLETIQTLTNHPALEETIERILTKYELRKEDLEAEMERQFEMFDNVPV* |
Ga0102963_10747165 | 3300009001 | Pond Water | MNDLIEMIEDLETIQTLTNHPALEETIERILTKYEERKEDLEAEMERQFEMFDNVPV* |
Ga0102963_10961101 | 3300009001 | Pond Water | MNDLLEMIEDLETISTMTMHPALEETIENIICKYIARKEDWEAEMERQFEMFDNVPV* |
Ga0129348_11087974 | 3300010296 | Freshwater To Marine Saline Gradient | MQELLEMIEDLETIQTLTMHPALEETIERILEKYEVRKIELEEEMERQY |
Ga0129348_12608494 | 3300010296 | Freshwater To Marine Saline Gradient | NMNDLIEMIEDLETISTMTMHPALEETIERILQKYEERKDDLEAEMERQYEMEV* |
Ga0129345_13164543 | 3300010297 | Freshwater To Marine Saline Gradient | MQELLEMIEDLETISTMTMHPALEETIERILQKYEQRKDDLEADMERQYELFKEELNF* |
Ga0129351_10803784 | 3300010300 | Freshwater To Marine Saline Gradient | MQELLEMIEDLETIQTLTMHPALEETIERILEKYEVRKIELEEDMERQYEMFDNVPV* |
Ga0129351_11058814 | 3300010300 | Freshwater To Marine Saline Gradient | MNDLIEIVEDLETIQTLTSHPALEETIERILEKYEVRKIELEE |
Ga0129351_13288241 | 3300010300 | Freshwater To Marine Saline Gradient | MQELLEMIEDLETISTMTMHPALEETIERILQKYEQRKEDLEADIERQY |
Ga0116836_10068903 | 3300013181 | Marine | MIEDLETISTMTMHPALDETVERILTKYEQRKDDLEAEMERQYEMEV* |
Ga0116836_10225983 | 3300013181 | Marine | MNELIEMIEDLETISTMTMHPALEETIERILTKYEERKDDLEAEMERQYEMEV* |
Ga0116815_10153033 | 3300013195 | Marine | MIEDLETISTMTMHPALEETIERILTKYEERKDDLEAEMERQYEMEV* |
Ga0182078_105309902 | 3300016747 | Salt Marsh | MNDLMEMIEDVETISTMTMHQALEETIERILTKYEERKDDLEAELERQYEMEV |
Ga0182084_15485941 | 3300016762 | Salt Marsh | MQELLEMIEDLETISTMTMHPALEETIERILQKYEQRKDD |
Ga0182063_15942405 | 3300016781 | Salt Marsh | MNELIEMIEDLETISTMTMHPALEETIERILTKYEERKDDLEAEME |
Ga0182090_14390331 | 3300016797 | Salt Marsh | EGIMQELLEMIEDLETISTMTMHPALEETIERILEKYEVRKIELEEDMERQYELEFMENVPV |
Ga0181565_100669656 | 3300017818 | Salt Marsh | MNELIEMIEDLETIQTMTMHPALEETIENILQKYEQRKDDLEADMERQYELFKEEINFG |
Ga0181565_101217804 | 3300017818 | Salt Marsh | MNELIEMIEDLETISTMTMHPALEETIERILTKYEERQADLEAEMERQYEMEV |
Ga0181565_102692443 | 3300017818 | Salt Marsh | MQELLEMIEDLETISTMTMHPALEETIERILQKYEQRKDDLEADMERQYELFKEELNF |
Ga0181565_102972693 | 3300017818 | Salt Marsh | MNDLLEMIEDLETISTMTMHPALDETVERILTKYEQRKDDLEAEMERQYEMEV |
Ga0181565_103638433 | 3300017818 | Salt Marsh | MNDLIEMIEDLETIQTMTMHPALEETIERILTKYEERKDDLEAELERQYEMEV |
Ga0181565_104932504 | 3300017818 | Salt Marsh | MLELLEMIEDLETIQTLTMHPALEETIERILEKYELRKEDLEAEMERQFEMEV |
Ga0181565_108328521 | 3300017818 | Salt Marsh | MNDLIEMIEDLETIQTLTMHPALEETIERILTKYEERKDDLEAEMERQYEMEV |
Ga0181565_109694192 | 3300017818 | Salt Marsh | MQDLLEMIEDLETIQTLTMHPALEETIERILEKYEVRKIELEEDMERQYELEFMENVPV |
Ga0181584_100441596 | 3300017949 | Salt Marsh | MNELLEMIEDLETIQTMTMHPALEETIENILQKYEQRKDDLEADMERQYELFKEEINFG |
Ga0181584_104355003 | 3300017949 | Salt Marsh | MNDLIEFIEDLETIQTLTNHPALEETIERILTKHEERLADYEADMARQHELDLV |
Ga0181584_106095644 | 3300017949 | Salt Marsh | MLELMEMIEDLETIQTLTMHPALEETIERILEKYELRKEDLEAEMERQFEMEV |
Ga0181577_101107025 | 3300017951 | Salt Marsh | MNDLIEMIEDLETIQTLTMHPALEETIERILTKYEERKDAWEAELERQYEMEV |
Ga0181577_102423384 | 3300017951 | Salt Marsh | MQELLEMIEDLETISTMTMHPALEETIERILQKYEQRKDDLEADLERQYELFKEELNF |
Ga0181577_103314144 | 3300017951 | Salt Marsh | MNDLLEMIEDLETIQTMTMHPALEETIERILEKYELRKEDLEAEMERQFEMEV |
Ga0181583_103922312 | 3300017952 | Salt Marsh | MNDLIEMIEDLETIQTLTMHPALEETIERILTKYEERKDDLEAELERQYEMEV |
Ga0181583_107358272 | 3300017952 | Salt Marsh | MNDLIEMIEDLETIQTLTMHPALEETIERILTKYEERKDALEAELERQYEMEI |
Ga0181571_108760822 | 3300017957 | Salt Marsh | MNDLLEMIEDLETIQTLTMHPALEETIENIICKYIARKEDWEAEMERQYELDMFDNVPV |
Ga0181581_104715012 | 3300017962 | Salt Marsh | MNDLIEMIEDLETISTMTMHPALEETIERILTKYEERKDDLEAEMERQYEMEV |
Ga0181589_108905292 | 3300017964 | Salt Marsh | MQELLEMIEDLETIQTLTMHPALEETIERILEKYELRKEDLEAEMERQ |
Ga0181589_109696184 | 3300017964 | Salt Marsh | GNCMNDLMEMIEDLETISTMTMHPALEETIERILTKYEERKDDLEAEMERQYEMEV |
Ga0181590_102319976 | 3300017967 | Salt Marsh | MNDLIEMIEDLETIQTLTSHPALEETIERILEKYEERKDALEAEMERQYDLFKEELNFG |
Ga0181590_105111101 | 3300017967 | Salt Marsh | MNDLMEMIEDLETISTMTMHPALEETIERILTKYEER |
Ga0181590_110382512 | 3300017967 | Salt Marsh | MNDLLEMIEDLETIQTLTNHPALEDTIVEILAKYDQRKEDLEAEMERQYDLFKEEINFG |
Ga0181587_106699944 | 3300017968 | Salt Marsh | MNDLIEMIEDLETISTMTMHPALEETIERILEKYEQRKDDLEAEMERQFEMEV |
Ga0181576_101654633 | 3300017985 | Salt Marsh | MNELIEMIEDLETISTMTMHPALEETIERILTKYEERKDDLEAEMERQYEMEV |
Ga0181576_105631581 | 3300017985 | Salt Marsh | MQELLEMIEDLETISTMTMHPALEETIERILQKYEQRKDDLEAD |
Ga0181569_103638141 | 3300017986 | Salt Marsh | MNDLIEMIEDLETIQTLTMHPALEETIERILTKYEERKTDLEAEMERQYE |
Ga0181579_106600303 | 3300018039 | Salt Marsh | MNDLIEMIEDLETIQTMTMHPALEETIERILTKYEERKD |
Ga0181572_102308774 | 3300018049 | Salt Marsh | MQELLEMIEDLETISTMTMHPALEETIERILQKYEQRKDDLKQTWNANMNCSRRN |
Ga0181572_105180571 | 3300018049 | Salt Marsh | MNDLLEMIEDLETIQTLTMHPALEETIENIICKYIARKEDWEAEMERQFEMFDNVPV |
Ga0181559_107179391 | 3300018415 | Salt Marsh | MNDLLEMIEDLETISTMTMHPALDETVERILTKYEQRKDDLE |
Ga0181553_101822365 | 3300018416 | Salt Marsh | MNELIEMIEDLETISTMTMHPALEETIERILQKYEQRK |
Ga0181567_104125331 | 3300018418 | Salt Marsh | KRATMNELIEMIEDLETISTMTMHPALEETIERILTKYEERQADLEAEMERQYEMEV |
Ga0181567_107558764 | 3300018418 | Salt Marsh | MNELIEMIEDLETISTMTMHPALEETIERILTKYEER |
Ga0181592_102714173 | 3300018421 | Salt Marsh | MNDLIEMIEDLETIQTLTMHPALEETIERILTKYEERKDALEAELERQYEMEV |
Ga0181593_108370861 | 3300018423 | Salt Marsh | MNELIEMIEDLETISTMTMHPALEETIERILTKYEERKEDLEAEMERQFEMEV |
Ga0181591_104997391 | 3300018424 | Salt Marsh | MNDLIEVIEDLETIQTLTMHPALEETIERILTKYEERKDAWEAELERQYEMEV |
Ga0181568_100842117 | 3300018428 | Salt Marsh | MNELIEMIEDLETIQTMTMHPALEETIENILQKYEQRKDDLEADLERQYELFKEEINFG |
Ga0182064_14120543 | 3300019253 | Salt Marsh | MNELLEMIEDLETISTMTMHPALEETIERILTKYEERQADLEAEMERQYEMEV |
Ga0181574_100934261 | 3300020056 | Salt Marsh | TKRATMNELIEMIEDLETISTMTMHPALEETIERILTKYEERQADLEAEMERQYEMEV |
Ga0181574_105207251 | 3300020056 | Salt Marsh | TMNDLLEMIEDLETISTMTMHPALDETVERILTKYEQRKDDLEAEMERQYEMEV |
Ga0211523_100321073 | 3300020414 | Marine | MNDLLEMIEDLETISTMTMHPALEETIERILVKYEQRKDDLEAEMERQYEMEV |
Ga0213867_10195795 | 3300021335 | Seawater | MNDLIEMIEDLETITSLTMHPALDETVERILQKYEQRKDDLEAEMERQYEMEV |
Ga0213867_10283567 | 3300021335 | Seawater | MNDLIEMIEDLETIQTMTMHPALEETIERILTKYEERKVDLEAELERQYEMEV |
Ga0213867_10284335 | 3300021335 | Seawater | MNDLIEMIEDLETISTMTMHPALEETIERILQKYEERKDDLEAEMERQYEMEV |
Ga0213867_10845303 | 3300021335 | Seawater | MNDLIEMIEDLETIQTLTSHPALEETIERILTKYEERKDAWEAELERQYDLFKEELNFG |
Ga0213867_11578981 | 3300021335 | Seawater | MYKLKGQNEMNDLIEMIEDLETISTMTMHPALEETIERILTKYEERKDDLEAEMERQYEMEV |
Ga0213858_100055772 | 3300021356 | Seawater | MNELVEMIEDLETISTMTMHPALEETIERITQKYEQRLADAEADLERQYEMDFA |
Ga0213858_100124514 | 3300021356 | Seawater | MNELIEMIEDLETISTMTMHPALDETVERILEKYEERKDAWEAELERQFEMEV |
Ga0213858_100464943 | 3300021356 | Seawater | MNELIEMIEDLETISTMTMHPALEETIERILEKYELRKEDLEAEMERQYEMEV |
Ga0213859_100929903 | 3300021364 | Seawater | MNELIEMIEDLETIQTLTSHPALEETIERILAKYEERAEDLEREMERQMGFDFA |
Ga0213860_100612574 | 3300021368 | Seawater | MQELLEMIEDLETISTMTMHPALEETIERILEKYEVRKIELEEDMERQYEMFDNVPV |
Ga0213860_101640673 | 3300021368 | Seawater | MNELIEMIEDLETIQTLTSHPALEETIERILAKYEERADDLEREMERQMGFDFA |
Ga0213860_105168161 | 3300021368 | Seawater | MNDLLEMIEDLETIQTMTMHPALEETIERILTKYEERKEDLEAEMERQYVMEV |
Ga0213865_100808547 | 3300021373 | Seawater | MNDLIEMIEDLETIQTMTMHPALEETIERILTKYEERKVDLEAELERQYDLFKEEL |
Ga0213864_100404781 | 3300021379 | Seawater | YINNITTMRDIMNDLIEMIEDLETITSLTMHPALDETVERILQKYEQRKDDLEAEMERQYEMEV |
Ga0213866_105979091 | 3300021425 | Seawater | MNDLIEMIEDLETISTMTMHPALEETIERILTKYEERKDALEAEMERQADLFDNVPV |
Ga0222717_100133693 | 3300021957 | Estuarine Water | MNELLEMIEDLETIQTLTMHPALDETVERILAKYEERREAWEAELERQYEMFKEELV |
Ga0222715_102268015 | 3300021960 | Estuarine Water | MNDLIEMIEDLETIQTLTNHPALEETIERILQKYDQRKEDLEAEMERQFEMF |
Ga0222719_107298762 | 3300021964 | Estuarine Water | MNDLIEMIEDLETISTMTMHPALEETIERILQKYEQRQADLEAEMERQFEMEV |
Ga0196895_10394912 | 3300022067 | Aqueous | MQELLEMIEDLETIQTLTMHPTLEETIERILEKYEERKDDLEAE |
Ga0255765_13461222 | 3300022921 | Salt Marsh | MQDLLEMIEDLETIQTLTMHPALEETIERILEKYEVRKIELEE |
Ga0255752_102092701 | 3300022929 | Salt Marsh | MNELIEMIEDLETISTMTMHPALEETIERILTKYEERQA |
Ga0255752_102800311 | 3300022929 | Salt Marsh | EMIEDLETISTMTMHPALEETIERILTKYEERKDDLEAEMERQYEMEV |
Ga0255781_104169281 | 3300022934 | Salt Marsh | MNELIEMIEDLETISTMTMHPALEETIERILTKYEERQADLEAEMERQY |
Ga0255764_103067861 | 3300023081 | Salt Marsh | MNDLIEMIEDLETISTMTMHPALEETIERILQKYEERKEDLEAEMERQFE |
Ga0255778_103817771 | 3300023084 | Salt Marsh | CGEVNMLELMEMIEDLETIQTLTMHPALEETIERILEKYELRKEDLEAEMERQFEMEV |
Ga0255782_102695711 | 3300023105 | Salt Marsh | MQELLEMIEDLETISTMTMHPALEETIERILQKYEQRKD |
Ga0255760_103888641 | 3300023115 | Salt Marsh | MNDLIEMIEDLETISTMTMHPALEETIERILQKYEERKEDLEAEMERQFEM |
Ga0255766_105183911 | 3300023172 | Salt Marsh | MNDLIEMIEDLETIQTLTMHPALEETIERILTKYEERKDAL |
Ga0255768_101781551 | 3300023180 | Salt Marsh | VNMLELMEMIEDLETIQTLTMHPALEETIERILEKYELRKEDLEAEMERQFEMEV |
Ga0208004_10423896 | 3300025630 | Aqueous | MHELLEMIEDLETIQTLTSHPALEETIERILEKYEVRKIE |
Ga0208162_11087821 | 3300025674 | Aqueous | MQELLEMIEDLETISTMTMHPALEETIERILQKYEQRKEDLEADLERQYEL |
Ga0209653_10073226 | 3300025695 | Marine | MNDLLEMIEDLETIQTMTMHPALEETIERILAKYEQRQSDWEADMSRQFDLDFMENVPV |
Ga0209555_102451022 | 3300025879 | Marine | MNDLLEMIEDLETIQTMTMHPALEETIERILTKYDQRREDLEADMARQFDLDFMENVPV |
Ga0348336_040325_1872_2048 | 3300034375 | Aqueous | MHELLEMIEDLETIQTLTMHPALEETIERILEKYEVRKIELEEDMERQYEMEFAGVTRL |
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