NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F100717

Metagenome / Metatranscriptome Family F100717

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F100717
Family Type Metagenome / Metatranscriptome
Number of Sequences 102
Average Sequence Length 52 residues
Representative Sequence MNDLIEMIEDLETISTMTMHPALEETIERILTKYEERKDDLEAEMERQYEMEV
Number of Associated Samples 67
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 84.31 %
% of genes near scaffold ends (potentially truncated) 38.24 %
% of genes from short scaffolds (< 2000 bps) 85.29 %
Associated GOLD sequencing projects 58
AlphaFold2 3D model prediction Yes
3D model pTM-score0.62

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (60.784 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh
(53.922 % of family members)
Environment Ontology (ENVO) Unclassified
(53.922 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(94.118 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78
1ACM24_10607144
2JGI26083J51738_101264112
3Ga0068515_1039445
4Ga0068514_10482272
5Ga0070749_101139717
6Ga0099849_11181631
7Ga0099849_11628181
8Ga0099849_13357343
9Ga0102948_11171003
10Ga0102951_11475662
11Ga0102954_10919515
12Ga0102963_10747165
13Ga0102963_10961101
14Ga0129348_11087974
15Ga0129348_12608494
16Ga0129345_13164543
17Ga0129351_10803784
18Ga0129351_11058814
19Ga0129351_13288241
20Ga0116836_10068903
21Ga0116836_10225983
22Ga0116815_10153033
23Ga0182078_105309902
24Ga0182084_15485941
25Ga0182063_15942405
26Ga0182090_14390331
27Ga0181565_100669656
28Ga0181565_101217804
29Ga0181565_102692443
30Ga0181565_102972693
31Ga0181565_103638433
32Ga0181565_104932504
33Ga0181565_108328521
34Ga0181565_109694192
35Ga0181584_100441596
36Ga0181584_104355003
37Ga0181584_106095644
38Ga0181577_101107025
39Ga0181577_102423384
40Ga0181577_103314144
41Ga0181583_103922312
42Ga0181583_107358272
43Ga0181571_108760822
44Ga0181581_104715012
45Ga0181589_108905292
46Ga0181589_109696184
47Ga0181590_102319976
48Ga0181590_105111101
49Ga0181590_110382512
50Ga0181587_106699944
51Ga0181576_101654633
52Ga0181576_105631581
53Ga0181569_103638141
54Ga0181579_106600303
55Ga0181572_102308774
56Ga0181572_105180571
57Ga0181559_107179391
58Ga0181553_101822365
59Ga0181567_104125331
60Ga0181567_107558764
61Ga0181592_102714173
62Ga0181593_108370861
63Ga0181591_104997391
64Ga0181568_100842117
65Ga0182064_14120543
66Ga0181574_100934261
67Ga0181574_105207251
68Ga0211523_100321073
69Ga0213867_10195795
70Ga0213867_10283567
71Ga0213867_10284335
72Ga0213867_10845303
73Ga0213867_11578981
74Ga0213858_100055772
75Ga0213858_100124514
76Ga0213858_100464943
77Ga0213859_100929903
78Ga0213860_100612574
79Ga0213860_101640673
80Ga0213860_105168161
81Ga0213865_100808547
82Ga0213864_100404781
83Ga0213866_105979091
84Ga0222717_100133693
85Ga0222715_102268015
86Ga0222719_107298762
87Ga0196895_10394912
88Ga0255765_13461222
89Ga0255752_102092701
90Ga0255752_102800311
91Ga0255781_104169281
92Ga0255764_103067861
93Ga0255778_103817771
94Ga0255782_102695711
95Ga0255760_103888641
96Ga0255766_105183911
97Ga0255768_101781551
98Ga0208004_10423896
99Ga0208162_11087821
100Ga0209653_10073226
101Ga0209555_102451022
102Ga0348336_040325_1872_2048
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 60.49%    β-sheet: 0.00%    Coil/Unstructured: 39.51%
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5101520253035404550MNDLIEMIEDLETISTMTMHPALEETIERILTKYEERKDDLEAEMERQYEMEVSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.62
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains




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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
39.2%60.8%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Marine
Marine Plankton
Aqueous
Seawater
Freshwater To Marine Saline Gradient
Marine
Salt Marsh
Marine
Estuarine Water
Marine Water
Pond Water
Water
2.9%7.8%14.7%5.9%2.9%53.9%2.9%2.9%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
ACM24_106071443300001833Marine PlanktonMKELIEMIEDLETIQTLVNHPALEDTIERILEKYEERKDAWEAEMERQ
JGI26083J51738_1012641123300003621MarineMNDLLEMIEDLETIQTMTMHPALEETIERILTKYDQRREDLEADMA
Ga0068515_10394453300004829Marine WaterMNDILEMIEDLETIQTLTMHPALDETVERILTKYEQRKDDLEAEMERQYEMEV*
Ga0068514_104822723300004941Marine WaterMNDLLEMIEDLETISTLTMHPALDETVERILTKYEQRKDDLEAEMERQYEMEV*
Ga0070749_1011397173300006802AqueousMQELLEMIEDLETIQTLTSHPALEETIERILEKYEVRKIELEEDME
Ga0099849_111816313300007539AqueousMQELLEMIEDLETISTMTMHPALEETIERILQKYEQRKEDLEADLERQYELFKEELNF*
Ga0099849_116281813300007539AqueousMQELLEMIEDLETIQTLTMHPALEETIERILQKYEERKDDLEAEMERQYEMEFAGVTRIL
Ga0099849_133573433300007539AqueousMNDLIEMIEDLETISTMTMHPALEETIERILQKYEERKDDLEAEMERQYEMGV*
Ga0102948_111710033300007623WaterMNDLIEMIEDLETISTMTMHPALEETIERILQKYEQRQADLEAEMERQFEMEV*
Ga0102951_114756623300007725WaterMNDLIEMIEDLETIQTLTNHPALEETIERILQKYDQRKEDLEAEMERQFEMF*
Ga0102954_109195153300007778WaterMNDLIEMIEDLETIQTLTNHPALEETIERILTKYELRKEDLEAEMERQFEMFDNVPV*
Ga0102963_107471653300009001Pond WaterMNDLIEMIEDLETIQTLTNHPALEETIERILTKYEERKEDLEAEMERQFEMFDNVPV*
Ga0102963_109611013300009001Pond WaterMNDLLEMIEDLETISTMTMHPALEETIENIICKYIARKEDWEAEMERQFEMFDNVPV*
Ga0129348_110879743300010296Freshwater To Marine Saline GradientMQELLEMIEDLETIQTLTMHPALEETIERILEKYEVRKIELEEEMERQY
Ga0129348_126084943300010296Freshwater To Marine Saline GradientNMNDLIEMIEDLETISTMTMHPALEETIERILQKYEERKDDLEAEMERQYEMEV*
Ga0129345_131645433300010297Freshwater To Marine Saline GradientMQELLEMIEDLETISTMTMHPALEETIERILQKYEQRKDDLEADMERQYELFKEELNF*
Ga0129351_108037843300010300Freshwater To Marine Saline GradientMQELLEMIEDLETIQTLTMHPALEETIERILEKYEVRKIELEEDMERQYEMFDNVPV*
Ga0129351_110588143300010300Freshwater To Marine Saline GradientMNDLIEIVEDLETIQTLTSHPALEETIERILEKYEVRKIELEE
Ga0129351_132882413300010300Freshwater To Marine Saline GradientMQELLEMIEDLETISTMTMHPALEETIERILQKYEQRKEDLEADIERQY
Ga0116836_100689033300013181MarineMIEDLETISTMTMHPALDETVERILTKYEQRKDDLEAEMERQYEMEV*
Ga0116836_102259833300013181MarineMNELIEMIEDLETISTMTMHPALEETIERILTKYEERKDDLEAEMERQYEMEV*
Ga0116815_101530333300013195MarineMIEDLETISTMTMHPALEETIERILTKYEERKDDLEAEMERQYEMEV*
Ga0182078_1053099023300016747Salt MarshMNDLMEMIEDVETISTMTMHQALEETIERILTKYEERKDDLEAELERQYEMEV
Ga0182084_154859413300016762Salt MarshMQELLEMIEDLETISTMTMHPALEETIERILQKYEQRKDD
Ga0182063_159424053300016781Salt MarshMNELIEMIEDLETISTMTMHPALEETIERILTKYEERKDDLEAEME
Ga0182090_143903313300016797Salt MarshEGIMQELLEMIEDLETISTMTMHPALEETIERILEKYEVRKIELEEDMERQYELEFMENVPV
Ga0181565_1006696563300017818Salt MarshMNELIEMIEDLETIQTMTMHPALEETIENILQKYEQRKDDLEADMERQYELFKEEINFG
Ga0181565_1012178043300017818Salt MarshMNELIEMIEDLETISTMTMHPALEETIERILTKYEERQADLEAEMERQYEMEV
Ga0181565_1026924433300017818Salt MarshMQELLEMIEDLETISTMTMHPALEETIERILQKYEQRKDDLEADMERQYELFKEELNF
Ga0181565_1029726933300017818Salt MarshMNDLLEMIEDLETISTMTMHPALDETVERILTKYEQRKDDLEAEMERQYEMEV
Ga0181565_1036384333300017818Salt MarshMNDLIEMIEDLETIQTMTMHPALEETIERILTKYEERKDDLEAELERQYEMEV
Ga0181565_1049325043300017818Salt MarshMLELLEMIEDLETIQTLTMHPALEETIERILEKYELRKEDLEAEMERQFEMEV
Ga0181565_1083285213300017818Salt MarshMNDLIEMIEDLETIQTLTMHPALEETIERILTKYEERKDDLEAEMERQYEMEV
Ga0181565_1096941923300017818Salt MarshMQDLLEMIEDLETIQTLTMHPALEETIERILEKYEVRKIELEEDMERQYELEFMENVPV
Ga0181584_1004415963300017949Salt MarshMNELLEMIEDLETIQTMTMHPALEETIENILQKYEQRKDDLEADMERQYELFKEEINFG
Ga0181584_1043550033300017949Salt MarshMNDLIEFIEDLETIQTLTNHPALEETIERILTKHEERLADYEADMARQHELDLV
Ga0181584_1060956443300017949Salt MarshMLELMEMIEDLETIQTLTMHPALEETIERILEKYELRKEDLEAEMERQFEMEV
Ga0181577_1011070253300017951Salt MarshMNDLIEMIEDLETIQTLTMHPALEETIERILTKYEERKDAWEAELERQYEMEV
Ga0181577_1024233843300017951Salt MarshMQELLEMIEDLETISTMTMHPALEETIERILQKYEQRKDDLEADLERQYELFKEELNF
Ga0181577_1033141443300017951Salt MarshMNDLLEMIEDLETIQTMTMHPALEETIERILEKYELRKEDLEAEMERQFEMEV
Ga0181583_1039223123300017952Salt MarshMNDLIEMIEDLETIQTLTMHPALEETIERILTKYEERKDDLEAELERQYEMEV
Ga0181583_1073582723300017952Salt MarshMNDLIEMIEDLETIQTLTMHPALEETIERILTKYEERKDALEAELERQYEMEI
Ga0181571_1087608223300017957Salt MarshMNDLLEMIEDLETIQTLTMHPALEETIENIICKYIARKEDWEAEMERQYELDMFDNVPV
Ga0181581_1047150123300017962Salt MarshMNDLIEMIEDLETISTMTMHPALEETIERILTKYEERKDDLEAEMERQYEMEV
Ga0181589_1089052923300017964Salt MarshMQELLEMIEDLETIQTLTMHPALEETIERILEKYELRKEDLEAEMERQ
Ga0181589_1096961843300017964Salt MarshGNCMNDLMEMIEDLETISTMTMHPALEETIERILTKYEERKDDLEAEMERQYEMEV
Ga0181590_1023199763300017967Salt MarshMNDLIEMIEDLETIQTLTSHPALEETIERILEKYEERKDALEAEMERQYDLFKEELNFG
Ga0181590_1051111013300017967Salt MarshMNDLMEMIEDLETISTMTMHPALEETIERILTKYEER
Ga0181590_1103825123300017967Salt MarshMNDLLEMIEDLETIQTLTNHPALEDTIVEILAKYDQRKEDLEAEMERQYDLFKEEINFG
Ga0181587_1066999443300017968Salt MarshMNDLIEMIEDLETISTMTMHPALEETIERILEKYEQRKDDLEAEMERQFEMEV
Ga0181576_1016546333300017985Salt MarshMNELIEMIEDLETISTMTMHPALEETIERILTKYEERKDDLEAEMERQYEMEV
Ga0181576_1056315813300017985Salt MarshMQELLEMIEDLETISTMTMHPALEETIERILQKYEQRKDDLEAD
Ga0181569_1036381413300017986Salt MarshMNDLIEMIEDLETIQTLTMHPALEETIERILTKYEERKTDLEAEMERQYE
Ga0181579_1066003033300018039Salt MarshMNDLIEMIEDLETIQTMTMHPALEETIERILTKYEERKD
Ga0181572_1023087743300018049Salt MarshMQELLEMIEDLETISTMTMHPALEETIERILQKYEQRKDDLKQTWNANMNCSRRN
Ga0181572_1051805713300018049Salt MarshMNDLLEMIEDLETIQTLTMHPALEETIENIICKYIARKEDWEAEMERQFEMFDNVPV
Ga0181559_1071793913300018415Salt MarshMNDLLEMIEDLETISTMTMHPALDETVERILTKYEQRKDDLE
Ga0181553_1018223653300018416Salt MarshMNELIEMIEDLETISTMTMHPALEETIERILQKYEQRK
Ga0181567_1041253313300018418Salt MarshKRATMNELIEMIEDLETISTMTMHPALEETIERILTKYEERQADLEAEMERQYEMEV
Ga0181567_1075587643300018418Salt MarshMNELIEMIEDLETISTMTMHPALEETIERILTKYEER
Ga0181592_1027141733300018421Salt MarshMNDLIEMIEDLETIQTLTMHPALEETIERILTKYEERKDALEAELERQYEMEV
Ga0181593_1083708613300018423Salt MarshMNELIEMIEDLETISTMTMHPALEETIERILTKYEERKEDLEAEMERQFEMEV
Ga0181591_1049973913300018424Salt MarshMNDLIEVIEDLETIQTLTMHPALEETIERILTKYEERKDAWEAELERQYEMEV
Ga0181568_1008421173300018428Salt MarshMNELIEMIEDLETIQTMTMHPALEETIENILQKYEQRKDDLEADLERQYELFKEEINFG
Ga0182064_141205433300019253Salt MarshMNELLEMIEDLETISTMTMHPALEETIERILTKYEERQADLEAEMERQYEMEV
Ga0181574_1009342613300020056Salt MarshTKRATMNELIEMIEDLETISTMTMHPALEETIERILTKYEERQADLEAEMERQYEMEV
Ga0181574_1052072513300020056Salt MarshTMNDLLEMIEDLETISTMTMHPALDETVERILTKYEQRKDDLEAEMERQYEMEV
Ga0211523_1003210733300020414MarineMNDLLEMIEDLETISTMTMHPALEETIERILVKYEQRKDDLEAEMERQYEMEV
Ga0213867_101957953300021335SeawaterMNDLIEMIEDLETITSLTMHPALDETVERILQKYEQRKDDLEAEMERQYEMEV
Ga0213867_102835673300021335SeawaterMNDLIEMIEDLETIQTMTMHPALEETIERILTKYEERKVDLEAELERQYEMEV
Ga0213867_102843353300021335SeawaterMNDLIEMIEDLETISTMTMHPALEETIERILQKYEERKDDLEAEMERQYEMEV
Ga0213867_108453033300021335SeawaterMNDLIEMIEDLETIQTLTSHPALEETIERILTKYEERKDAWEAELERQYDLFKEELNFG
Ga0213867_115789813300021335SeawaterMYKLKGQNEMNDLIEMIEDLETISTMTMHPALEETIERILTKYEERKDDLEAEMERQYEMEV
Ga0213858_1000557723300021356SeawaterMNELVEMIEDLETISTMTMHPALEETIERITQKYEQRLADAEADLERQYEMDFA
Ga0213858_1001245143300021356SeawaterMNELIEMIEDLETISTMTMHPALDETVERILEKYEERKDAWEAELERQFEMEV
Ga0213858_1004649433300021356SeawaterMNELIEMIEDLETISTMTMHPALEETIERILEKYELRKEDLEAEMERQYEMEV
Ga0213859_1009299033300021364SeawaterMNELIEMIEDLETIQTLTSHPALEETIERILAKYEERAEDLEREMERQMGFDFA
Ga0213860_1006125743300021368SeawaterMQELLEMIEDLETISTMTMHPALEETIERILEKYEVRKIELEEDMERQYEMFDNVPV
Ga0213860_1016406733300021368SeawaterMNELIEMIEDLETIQTLTSHPALEETIERILAKYEERADDLEREMERQMGFDFA
Ga0213860_1051681613300021368SeawaterMNDLLEMIEDLETIQTMTMHPALEETIERILTKYEERKEDLEAEMERQYVMEV
Ga0213865_1008085473300021373SeawaterMNDLIEMIEDLETIQTMTMHPALEETIERILTKYEERKVDLEAELERQYDLFKEEL
Ga0213864_1004047813300021379SeawaterYINNITTMRDIMNDLIEMIEDLETITSLTMHPALDETVERILQKYEQRKDDLEAEMERQYEMEV
Ga0213866_1059790913300021425SeawaterMNDLIEMIEDLETISTMTMHPALEETIERILTKYEERKDALEAEMERQADLFDNVPV
Ga0222717_1001336933300021957Estuarine WaterMNELLEMIEDLETIQTLTMHPALDETVERILAKYEERREAWEAELERQYEMFKEELV
Ga0222715_1022680153300021960Estuarine WaterMNDLIEMIEDLETIQTLTNHPALEETIERILQKYDQRKEDLEAEMERQFEMF
Ga0222719_1072987623300021964Estuarine WaterMNDLIEMIEDLETISTMTMHPALEETIERILQKYEQRQADLEAEMERQFEMEV
Ga0196895_103949123300022067AqueousMQELLEMIEDLETIQTLTMHPTLEETIERILEKYEERKDDLEAE
Ga0255765_134612223300022921Salt MarshMQDLLEMIEDLETIQTLTMHPALEETIERILEKYEVRKIELEE
Ga0255752_1020927013300022929Salt MarshMNELIEMIEDLETISTMTMHPALEETIERILTKYEERQA
Ga0255752_1028003113300022929Salt MarshEMIEDLETISTMTMHPALEETIERILTKYEERKDDLEAEMERQYEMEV
Ga0255781_1041692813300022934Salt MarshMNELIEMIEDLETISTMTMHPALEETIERILTKYEERQADLEAEMERQY
Ga0255764_1030678613300023081Salt MarshMNDLIEMIEDLETISTMTMHPALEETIERILQKYEERKEDLEAEMERQFE
Ga0255778_1038177713300023084Salt MarshCGEVNMLELMEMIEDLETIQTLTMHPALEETIERILEKYELRKEDLEAEMERQFEMEV
Ga0255782_1026957113300023105Salt MarshMQELLEMIEDLETISTMTMHPALEETIERILQKYEQRKD
Ga0255760_1038886413300023115Salt MarshMNDLIEMIEDLETISTMTMHPALEETIERILQKYEERKEDLEAEMERQFEM
Ga0255766_1051839113300023172Salt MarshMNDLIEMIEDLETIQTLTMHPALEETIERILTKYEERKDAL
Ga0255768_1017815513300023180Salt MarshVNMLELMEMIEDLETIQTLTMHPALEETIERILEKYELRKEDLEAEMERQFEMEV
Ga0208004_104238963300025630AqueousMHELLEMIEDLETIQTLTSHPALEETIERILEKYEVRKIE
Ga0208162_110878213300025674AqueousMQELLEMIEDLETISTMTMHPALEETIERILQKYEQRKEDLEADLERQYEL
Ga0209653_100732263300025695MarineMNDLLEMIEDLETIQTMTMHPALEETIERILAKYEQRQSDWEADMSRQFDLDFMENVPV
Ga0209555_1024510223300025879MarineMNDLLEMIEDLETIQTMTMHPALEETIERILTKYDQRREDLEADMARQFDLDFMENVPV
Ga0348336_040325_1872_20483300034375AqueousMHELLEMIEDLETIQTLTMHPALEETIERILEKYEVRKIELEEDMERQYEMEFAGVTRL


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