Metagenome / Metatranscriptome Family F100644

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100644
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	71 residues
Representative Sequence	RLGFESALHARTRCKEYDQVMGEMTAQIEDLERQYPGVDVAEPFTRGYERGRDYYQQLCSESKAA
Number of Associated Samples	84
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.00 %
% of genes near scaffold ends (potentially truncated)	96.08 %
% of genes from short scaffolds (< 2000 bps)	84.31 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.59

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (86.275 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (18.628 % of family members)
Environment Ontology (ENVO)	Unclassified (36.275 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (76.471 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 61.29% β-sheet: 0.00% Coil/Unstructured: 38.71%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.59
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.59
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF13620	CarboxypepD_reg	4.90
PF00072	Response_reg	2.94
PF11345	DUF3147	1.96
PF02518	HATPase_c	1.96
PF03358	FMN_red	1.96
PF07730	HisKA_3	0.98
PF07883	Cupin_2	0.98
PF06170	DUF983	0.98
PF00069	Pkinase	0.98
PF13450	NAD_binding_8	0.98
PF00210	Ferritin	0.98
PF01594	AI-2E_transport	0.98
PF13668	Ferritin_2	0.98
PF11941	DUF3459	0.98
PF12779	WXXGXW	0.98
PF13586	DDE_Tnp_1_2	0.98
PF04542	Sigma70_r2	0.98
PF00903	Glyoxalase	0.98
PF04430	DUF498	0.98
PF07228	SpoIIE	0.98
PF04075	F420H2_quin_red	0.98
PF06202	GDE_C	0.98
PF11752	DUF3309	0.98
PF07689	KaiB	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.92
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.98
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	0.98
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.98
COG1504	Uncharacterized conserved protein, DUF498 domain	Function unknown [S]	0.98
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.98
COG3408	Glycogen debranching enzyme (alpha-1,6-glucosidase)	Carbohydrate transport and metabolism [G]	0.98
COG3737	Uncharacterized protein, contains Mth938-like domain	Function unknown [S]	0.98
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	0.98
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.98
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.98
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	0.98
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.98
COG5349	Uncharacterized conserved protein, DUF983 family	Function unknown [S]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	86.27 %
Unclassified	root	N/A	13.73 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	86.27 %
Unclassified	root	N/A	13.73 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	86.27 %
Unclassified	root	N/A	13.73 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	60.78 %
Unclassified	root	N/A	13.73 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.96 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	50.00 %
Unclassified	root	N/A	13.73 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	48.04 %
Unclassified	root	N/A	13.73 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	2.94 %
Acidobacteria bacterium 13_1_20CM_4_56_7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7	1.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	48.04 %
Unclassified	root	N/A	13.73 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.94 %
Acidobacteria bacterium 13_1_20CM_4_56_7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7	1.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	48.04 %
Unclassified	root	N/A	13.73 %
Acidobacteria bacterium 13_1_20CM_4_56_7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7	1.96 %
Candidatus Sulfotelmatobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	0.98 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	48.04 %
Unclassified	root	N/A	13.73 %
Acidobacteria bacterium 13_1_20CM_4_56_7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7	1.96 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	0.98 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001593\|JGI12635J15846_10722717	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	573	Open in IMG/M
3300002245\|JGIcombinedJ26739_101432545	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	585	Open in IMG/M
3300002245\|JGIcombinedJ26739_101712471	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	528	Open in IMG/M
3300004080\|Ga0062385_10051223	All Organisms → cellular organisms → Bacteria	1787	Open in IMG/M
3300004080\|Ga0062385_11064422	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	546	Open in IMG/M
3300005332\|Ga0066388_107593901	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300005533\|Ga0070734_10260063	All Organisms → cellular organisms → Bacteria	995	Open in IMG/M
3300005534\|Ga0070735_10023325	All Organisms → cellular organisms → Bacteria	4415	Open in IMG/M
3300005538\|Ga0070731_10158189	All Organisms → cellular organisms → Bacteria	1503	Open in IMG/M
3300005591\|Ga0070761_10956345	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	542	Open in IMG/M
3300005712\|Ga0070764_10237340	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1034	Open in IMG/M
3300005712\|Ga0070764_10852974	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	569	Open in IMG/M
3300005921\|Ga0070766_10158001	All Organisms → cellular organisms → Bacteria → Acidobacteria	1393	Open in IMG/M
3300006854\|Ga0075425_102879099	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	528	Open in IMG/M
3300006893\|Ga0073928_10180462	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1672	Open in IMG/M
3300006893\|Ga0073928_10366902	All Organisms → cellular organisms → Bacteria	1062	Open in IMG/M
3300010339\|Ga0074046_10335367	Not Available	923	Open in IMG/M
3300010361\|Ga0126378_13001841	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	538	Open in IMG/M
3300010362\|Ga0126377_11918902	All Organisms → cellular organisms → Bacteria	668	Open in IMG/M
3300010379\|Ga0136449_102026532	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	848	Open in IMG/M
3300010398\|Ga0126383_10290770	All Organisms → cellular organisms → Bacteria	1626	Open in IMG/M
3300012361\|Ga0137360_11078237	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	694	Open in IMG/M
3300012683\|Ga0137398_10153744	Not Available	1495	Open in IMG/M
3300014495\|Ga0182015_10436387	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	842	Open in IMG/M
3300014501\|Ga0182024_11314898	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	837	Open in IMG/M
3300014501\|Ga0182024_12028075	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	635	Open in IMG/M
3300016319\|Ga0182033_12039949	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	523	Open in IMG/M
3300017823\|Ga0187818_10017609	All Organisms → cellular organisms → Bacteria	3054	Open in IMG/M
3300017955\|Ga0187817_10694645	Not Available	649	Open in IMG/M
3300017955\|Ga0187817_11021113	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	530	Open in IMG/M
3300018007\|Ga0187805_10060863	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1697	Open in IMG/M
3300018035\|Ga0187875_10377925	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	759	Open in IMG/M
3300018047\|Ga0187859_10036330	All Organisms → cellular organisms → Bacteria	2647	Open in IMG/M
3300018468\|Ga0066662_12325134	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300019278\|Ga0187800_1768648	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	915	Open in IMG/M
3300019786\|Ga0182025_1151807	All Organisms → cellular organisms → Bacteria → Acidobacteria	905	Open in IMG/M
3300019881\|Ga0193707_1064371	All Organisms → cellular organisms → Bacteria	1148	Open in IMG/M
3300020581\|Ga0210399_10062435	All Organisms → cellular organisms → Bacteria → Acidobacteria	3008	Open in IMG/M
3300021088\|Ga0210404_10412442	Not Available	756	Open in IMG/M
3300021171\|Ga0210405_11212366	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	558	Open in IMG/M
3300021171\|Ga0210405_11249877	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	548	Open in IMG/M
3300021178\|Ga0210408_10314863	Not Available	1248	Open in IMG/M
3300021180\|Ga0210396_10844815	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	783	Open in IMG/M
3300021181\|Ga0210388_10787961	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	824	Open in IMG/M
3300021181\|Ga0210388_11711194	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	520	Open in IMG/M
3300021402\|Ga0210385_10542663	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	884	Open in IMG/M
3300021403\|Ga0210397_10224058	All Organisms → cellular organisms → Bacteria	1354	Open in IMG/M
3300021404\|Ga0210389_10035990	All Organisms → cellular organisms → Bacteria	3803	Open in IMG/M
3300021420\|Ga0210394_11424753	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	588	Open in IMG/M
3300021432\|Ga0210384_10445717	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1166	Open in IMG/M
3300021432\|Ga0210384_11721329	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	532	Open in IMG/M
3300021432\|Ga0210384_11895502	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	502	Open in IMG/M
3300021433\|Ga0210391_10469257	All Organisms → cellular organisms → Bacteria	988	Open in IMG/M
3300021433\|Ga0210391_10907517	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	687	Open in IMG/M
3300021433\|Ga0210391_10941180	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	673	Open in IMG/M
3300021479\|Ga0210410_11366948	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	601	Open in IMG/M
3300022557\|Ga0212123_10417874	All Organisms → cellular organisms → Bacteria	894	Open in IMG/M
3300022732\|Ga0224569_106076	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7	889	Open in IMG/M
3300022733\|Ga0224562_1016460	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	601	Open in IMG/M
3300023019\|Ga0224560_102485	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7	1245	Open in IMG/M
3300024227\|Ga0228598_1063831	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	734	Open in IMG/M
3300024271\|Ga0224564_1033373	Not Available	972	Open in IMG/M
3300024271\|Ga0224564_1095228	Not Available	602	Open in IMG/M
3300025939\|Ga0207665_10495534	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	943	Open in IMG/M
3300027548\|Ga0209523_1021998	All Organisms → cellular organisms → Bacteria → Acidobacteria	1251	Open in IMG/M
3300027568\|Ga0208042_1188677	Not Available	511	Open in IMG/M
3300027676\|Ga0209333_1108939	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	753	Open in IMG/M
3300027727\|Ga0209328_10194422	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	612	Open in IMG/M
3300027745\|Ga0209908_10038213	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1012	Open in IMG/M
3300027767\|Ga0209655_10067673	All Organisms → cellular organisms → Bacteria	1188	Open in IMG/M
3300027768\|Ga0209772_10202333	Not Available	629	Open in IMG/M
3300027826\|Ga0209060_10193403	Not Available	938	Open in IMG/M
3300027853\|Ga0209274_10729748	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	511	Open in IMG/M
3300027869\|Ga0209579_10025799	All Organisms → cellular organisms → Bacteria → Acidobacteria	3249	Open in IMG/M
3300027869\|Ga0209579_10235225	Not Available	983	Open in IMG/M
3300027869\|Ga0209579_10664341	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	565	Open in IMG/M
3300027879\|Ga0209169_10043342	All Organisms → cellular organisms → Bacteria → Acidobacteria	2354	Open in IMG/M
3300027879\|Ga0209169_10732024	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	511	Open in IMG/M
3300027884\|Ga0209275_10005819	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5136	Open in IMG/M
3300027889\|Ga0209380_10132664	All Organisms → cellular organisms → Bacteria → Acidobacteria	1452	Open in IMG/M
3300027895\|Ga0209624_10202634	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1318	Open in IMG/M
3300028874\|Ga0302155_10026031	All Organisms → cellular organisms → Bacteria	2826	Open in IMG/M
3300028906\|Ga0308309_10017825	All Organisms → cellular organisms → Bacteria	4623	Open in IMG/M
3300029883\|Ga0311327_10093823	All Organisms → cellular organisms → Bacteria	2232	Open in IMG/M
3300029999\|Ga0311339_10567613	Not Available	1137	Open in IMG/M
3300030618\|Ga0311354_11736124	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	544	Open in IMG/M
3300030879\|Ga0265765_1070555	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	506	Open in IMG/M
3300031236\|Ga0302324_100931686	All Organisms → cellular organisms → Bacteria	1190	Open in IMG/M
3300031708\|Ga0310686_105989330	All Organisms → cellular organisms → Bacteria → Acidobacteria	2919	Open in IMG/M
3300031708\|Ga0310686_106721189	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	519	Open in IMG/M
3300031708\|Ga0310686_110466711	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1481	Open in IMG/M
3300031715\|Ga0307476_10074624	All Organisms → cellular organisms → Bacteria	2358	Open in IMG/M
3300031718\|Ga0307474_10899835	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	700	Open in IMG/M
3300031820\|Ga0307473_11266344	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	551	Open in IMG/M
3300031954\|Ga0306926_11056109	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	963	Open in IMG/M
3300031962\|Ga0307479_10610854	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1072	Open in IMG/M
3300032160\|Ga0311301_10290121	All Organisms → cellular organisms → Bacteria → Proteobacteria	2635	Open in IMG/M
3300032205\|Ga0307472_101283740	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	704	Open in IMG/M
3300032515\|Ga0348332_13547492	All Organisms → cellular organisms → Bacteria	1914	Open in IMG/M
3300032892\|Ga0335081_12642237	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.06%
Host-Associated	Host-Associated	2.94%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.33%
Aquatic	Environmental → Aquatic	13.73%
Plants	Host-Associated → Plants	2.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	77.45%
Freshwater	Environmental → Aquatic → Freshwater	9.80%
Peat	Environmental → Terrestrial → Peat	4.90%
Thermal Springs	Environmental → Aquatic → Thermal Springs	2.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.94%
Sediment	Environmental → Aquatic → Sediment	0.98%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.98%
Loam	Environmental → Terrestrial → Soil → Loam	18.63%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	9.80%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.84%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	4.90%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	2.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.98%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	25.49%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.53%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	17.65%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	5.88%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	4.90%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	4.90%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.92%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	2.94%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.98%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.98%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.98%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.63%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	9.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.82%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	6.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.86%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.90%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.92%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.92%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	2.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.94%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.94%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	2.94%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	2.94%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.96%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.96%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.96%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.98%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.98%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.98%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.98%
Thawing Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost	0.98%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.98%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019278	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019786	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022732	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU1	Host-Associated	Open in IMG/M
3300022733	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU3	Environmental	Open in IMG/M
3300023019	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU1	Environmental	Open in IMG/M
3300024227	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4	Host-Associated	Open in IMG/M
3300024271	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU5	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027548	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027568	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG (SPAdes)	Environmental	Open in IMG/M
3300027676	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027745	Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 812P2M	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027768	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027826	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300028874	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_1	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029883	I_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030879	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12635J15846_107227171	3300001593	Forest Soil	DEKFYRMGFEAALHSRMRCKEYDQVMGEMNAKIEELEQQHPGTEVGEAFRRGYERGRDHYQQLCNESKAA*
JGIcombinedJ26739_1014325451	3300002245	Forest Soil	GFESALHARTRCKEYDQVMGEMNAAIRDLELLNPGVDVATPFTRGYERGRDYYQQLCGKSKAA*
JGIcombinedJ26739_1017124711	3300002245	Forest Soil	HYSTLGRNFGNDETFYRLGFESALHARTRCKEYDQTLAEMNAKIEDLERQYPGVEVAEPFTRGYERGRDHYQHLCDKSTAA*
Ga0062385_100512233	3300004080	Bog Forest Soil	SALHARTRCKEYDEVMGEMTAEIEELERQHPGGNVAEPFTRGYERGRDYYQQLCSESEAA
Ga0062385_110644222	3300004080	Bog Forest Soil	QFYRLGFESALHARTRCKEYDQVMGEMNAEIEDLERQHPGVDVAEPFTRGYERGRDYYQQLCSESKAA*
Ga0066388_1075939012	3300005332	Tropical Forest Soil	RTRCKEYDQTLGEMDAKIDELEQQYPGRDIAGPFTRGYERGRNYYQHLCDESRAA*
Ga0070734_102600631	3300005533	Surface Soil	ESEHYQTHGQKPGDNEKYYRLGFESALHARTRCKEYDQVMGEMNAAIRDLERGNPGVDVATPFTRGYERGRDYYQELCNKSKAA*
Ga0070735_100233258	3300005534	Surface Soil	QKPGDNEKYYRLGFESALHARTRCKEYDQVMGEMNAAIRDLEQGNPGVDVATPFTRGYERGRDYYQELCNKSKAA*
Ga0070731_101581894	3300005538	Surface Soil	RLGFESALHARTRCKEYDQVMGEMNAAIRDLEQGNPGVDVATPFTRGYERGRDYYQELCNKSKAA*
Ga0070761_109563451	3300005591	Soil	EDEKFYRLGFESALHARTRCKEYDQVMGEMNAEIEELERQHPGVDVAEPFTRGYERGRDYYQQLCSESRAA*
Ga0070764_102373403	3300005712	Soil	FGRNLSEDEKFYRLGFESALHARTRCKEYDQVLAEMTVDIEELERRYPGAQVAEPFRRGYERGRDYYQRLCGESKAA*
Ga0070764_108529742	3300005712	Soil	LRSAEREHYSSRGRNFTEDEKFYRLGFESALHARTRCKEYDQVLAEMDAKIEEVELQYPGKQAAEPFRKGYERGRDYYQRLCEEAKVA*
Ga0070766_101580012	3300005921	Soil	RMGFESALHARTRCKEYDQVMGEMTAQIEELEQQYPGAEVSEAYQRGYERGRDYYQQLCNESKAA*
Ga0075017_1000167271	3300006059	Watersheds	ALHARMRCQEYDQVLAEMSVQIEELERQYPGTEVADAFTRGYQRGREHYQEMCNESKAA*
Ga0079220_109720662	3300006806	Agricultural Soil	RCREFDQVSSEMANHIEEVERAHPGEEVSDAFTRGYQRGREYYERMCEESKAA*
Ga0075425_1028790991	3300006854	Populus Rhizosphere	NFGDDEIFYRLGFEAALHARTRCKEYDQTLGEMNAKLEELEQQYPGRDVAEPFIRGYERGRDYYQHLCDESRAA*
Ga0073928_101804625	3300006893	Iron-Sulfur Acid Spring	FGNDEKFYRLGFEAALHARTRCKEYDQTLGEMDSKIEDLERQHPGIDVAEPFRKGYERGRDYYQKLCNESKAA*
Ga0073928_103669023	3300006893	Iron-Sulfur Acid Spring	YYRLGFESALHARTRCKEYDQVMGEMNAAIRDLERGNPGVDVATPFTRGYERGRDYYQELCNKSKVA*
Ga0074046_103353672	3300010339	Bog Forest Soil	ALHARTRCKEYDQVMGEMSAQIEDLEHQNPGVNVAEPLTRGYERGRDYYQELCSKQKAA*
Ga0126378_130018411	3300010361	Tropical Forest Soil	EAALHARTRCKEYDQTLGEMDAKIADLEQQYPGRDVAEPFSRGYERGRDYYQHLCDESKAA*
Ga0126377_119189023	3300010362	Tropical Forest Soil	NFGDDEIFYRLGFEAALHARTRCKEYDQTLAEMNVKLEELEQQYPGRDVAEPFTRGYERGRDYYQHLCDESRAA*
Ga0136449_1020265321	3300010379	Peatlands Soil	HYSAQGKNFGEDEKFYRAGFEAALHARTRCKEYDQVLSEMTVKLEEVQKENPGSNVAEPFTKGYERGRDYYQQICDQSKAA*
Ga0126383_102907704	3300010398	Tropical Forest Soil	HGPNFGDDEIFYRLGFEAALHARTRCKEYDQTLGEMDAKIADLEQQYPGRDVAEPFSRGYERGRDYYQHLCDESKAA*
Ga0137360_110782371	3300012361	Vadose Zone Soil	DEKFYRQGFESALHARTRCKEYDQVLAEMNAEVEELERQHPGAEVAEPFRRGYERGRDYYQRLCDESRAA*
Ga0137398_101537443	3300012683	Vadose Zone Soil	FQAALHARTRCKEYDQVLSEMSVQVEELERQHPGAEVTEPFTKGFERGREHYQELCNQSRAA*
Ga0182015_104363872	3300014495	Palsa	RCKEYDQVLGEMTAKTEELEKQYPGVDVAGPFTRGYERGREHYQHLCTESKAA*
Ga0182024_113148981	3300014501	Permafrost	RSAEREHYSAQGRNFDGDEKFYRIGFESALHARTRCKEYDQVLAEMGAKLEEVQQQYPNASVEEPFTKGYERGRDYYQQICDKSKAA*
Ga0182024_120280751	3300014501	Permafrost	FEAALHARSRCKEYDQVLGEMTAKIEELEQKHPGVDVAGPFTRGYERGREHYQQLCNKSKAA*
Ga0182033_120399491	3300016319	Soil	LRSAEQEHYTAIGKNFGADEKFYRMGFEAALHAQSRCKEYDQALAEMSARVEDLERQYPGEAVEEPFLRGYERGRDHYQALCDHSKAA
Ga0187818_100176091	3300017823	Freshwater Sediment	EHYSTLGKDFGNDEKFYRLGFESALHARTRCKEYDQVMGEMSAQIEDLERQYPGVNVAEPFTRGYERGRDYYQELCSKQKAA
Ga0187817_106946452	3300017955	Freshwater Sediment	ARTRCKEYDQTLAEMDRKIEDLERKYTGVDVAEPFRKGYERGRDHYQQLCDESKAA
Ga0187817_110211132	3300017955	Freshwater Sediment	RTRCKEYDQVMGEMSAQIEDLERQYPGVNVAEPFTRGYERGRDYYQELCSKQEAA
Ga0187805_100608631	3300018007	Freshwater Sediment	GHYSTHSRNFSNDEKFYRLGFEAALHARTRCKEYDQVLAEMDSKIEDIEREYPGMNAGEPFCKGYERGRDYYQQLCNESKAA
Ga0187875_103779252	3300018035	Peatland	RMGFESALHARTRCKEYDQVMGEMTAQIEDLESQHPGINIAEPFTRGYERGRDYYQQLCSESKAA
Ga0187859_100363301	3300018047	Peatland	FYRMGFESALHARTRCKEYDQVMGEMTAQIEDLESQHPGINVAEPFTRGYERGRDYYQQLCSESKAA
Ga0066662_123251342	3300018468	Grasslands Soil	AALHARSRCKEYDQVLGEMNATLEDVRRQYPNANMDEPFTRGYERGRDYYQGLCNQSEAA
Ga0187800_17686482	3300019278	Peatland	LRSAEEEHYSSHGRNFTNDEKFYRLGFEAALHARTRCMEYDQVLGEMDSKIEDIERENPGANAGEPFRKGYERGRDYYQQLCDESKAA
Ga0182025_11518071	3300019786	Permafrost	MGFESALHARSRCKEYDQVLGEMTVQIEELERQHLGANVGEPFRRGYERGRDYYQRLCDERKAA
Ga0193707_10643711	3300019881	Soil	ERERYSTLGKNFSEDEHFFRLGFQAALHARSRCKEYDQVLAEMSVHIEELERQYPGSEVAEIYTRGYQRGREHYEQLCRESKAA
Ga0210399_100624351	3300020581	Soil	SFSRNLSENEKFYRMGFESALHARTRCKEYDQVMGEMTAQIEELEQQYPGAEVSEAYQRGYERGRDYYQQLCNESKAA
Ga0210404_104124421	3300021088	Soil	SALHARTRCKEYDQVMGEMNARIEDLEREHPGVNVSEPFTRGYERGRDYYQQLCSQSKAA
Ga0210405_112123662	3300021171	Soil	FESALHARTRCKQYDQVMGEMNAEIEDLERQHPGADVAEPFTRGYERGRDYYQQLCSESRAA
Ga0210405_112498772	3300021171	Soil	ARTRCKEYDQVMGEMNAEIEDLERQHPGVDLAEPFTRGYERGCDYYQQLCSESKAA
Ga0210408_103148631	3300021178	Soil	SALHARTRCKEYDQTLAEMTAKIEDLERQYPGVELAEPFTRGYERGRDHYQQLCDKSRAA
Ga0210396_108448151	3300021180	Soil	ARTRCKEYDQVMGEMTAQIEELEQQYPGAEVSEAYQRGYERGRDYYQQLCNESKAA
Ga0210388_107879611	3300021181	Soil	NDEKFYRLGFECALHAQARCKEYDQVMGEMTAKVEELEAAYPGAEVAEPFTRGYERGRDYYQEMCDKQKAA
Ga0210388_117111942	3300021181	Soil	FYRLGFESALHARTRCKEYDQVMGEMNAEIEDLERQHPGVDVAQPFTRGYERGRDYYQQLCSESKAA
Ga0210385_105426631	3300021402	Soil	FGRNLSEDEKFYRLGFESALHARTRCKEYDQVLAEMTVDIEELERRYPGAQVAEPFRRGYERGRDYYQRLCGESKAA
Ga0210397_102240583	3300021403	Soil	YSTLGRNFTEDEKFYRLGFESALHARTRCKEYDQVMGEMNAEIEDLERQHPGVDIAEPFTRGYERGRDYYQQLCSESRAA
Ga0210389_100359902	3300021404	Soil	MGFESALHARTRCKEYDQVMGEMTAQIEELEQQYPGAEVSEAYQRGYERGRDYYQQLCNESKAA
Ga0210394_114247532	3300021420	Soil	GLRDAEMEHYSSFSRNLSENEKFYRMGFESALHARTRCKEYDQVMGEMTAQIEELEQQYPGAEVSEAYQRGYERGRDYYQQLCNESKAA
Ga0210384_104457171	3300021432	Soil	RLGFESALHARTRCKEYDQVLGEMDADIDELERRYPGKALAEPFRRGYERGRAYYQHLCDESKAA
Ga0210384_117213291	3300021432	Soil	YRLGFESALHARTRCKEYDQVMGEMNAEIEDLERQHPGVDIAEPFTRGYERGRDYYQQLCSESKAA
Ga0210384_118955022	3300021432	Soil	DEKFYRLGFESALHARTRCKEYDQVLGEMVAKLEDVQREYPSASVEKPFTHGYERGRNYYQRLCNQCTPASSHL
Ga0210391_104692572	3300021433	Soil	YSAGGKNFGEDEKFYRLGFESALHARTRCKEYDEVMGEMTAEIEELERQHPGVNVAEPFTRGYERGRDYYQQLCSQSEAA
Ga0210391_109075172	3300021433	Soil	GFESALHARTRCKEYDQVMGEMNAEIEDLERQHPGVDVAQPFTRGYERGRDYYQQLCSESKAA
Ga0210391_109411801	3300021433	Soil	RDAEHEHYSTLGKNFAEDEKFYRLGFESALHARTRCKEYDQVMGEMNAEIEDLEGQHPGVNVAEPFTRGYERGRDYYQQLCSESKAA
Ga0210410_113669482	3300021479	Soil	RDAEHEHYSTLGRNFTEDEKFYRLGFESALHARTRCKEYDQVMGEMNAEIEDLERQHPGVDIAEPFTRGYERGRDYYQQLCSESRAA
Ga0212123_104178741	3300022557	Iron-Sulfur Acid Spring	AKSEHYSTHGEKPGEYERYYRLGFESALHARTRCKEYDQVMGEMNAAIRDLERRNPGVDVATPFTRGYERGRDYYQQLCGKSKAA
Ga0224569_1060762	3300022732	Rhizosphere	EKFYRLGFESALHARTRCKEYDQVLGEMTTAIEDLERENPGAHVAEPFQRGYERGRDYYQRLCNESKAA
Ga0224562_10164601	3300022733	Soil	LSDDEKFYRLGFESALHARTRCKEYDQVLGEMTAAIEDLERENPGAHVAEPFQRGYERGRDYYQRLCNESKAA
Ga0224560_1024851	3300023019	Soil	LGFESALHARTRCKEYDQVLGEMTTAIEDLERENPGAHVAEPFQRGYERGRDYYQRLCNESKAA
Ga0228598_10638311	3300024227	Rhizosphere	LSDDEKFYRLGFESALHARTRCKEYDQVLGEMTTAIEDLERENPGAHVAEPFQRGYERGRDYYQRLCNESKAA
Ga0224564_10333732	3300024271	Soil	GKNFKEDEKFYRVGFESALHARTRCKEYDQVMGEMTAQIEDLERQHPGVDVAEPFTRGYERGRDYYQQLCSESKAA
Ga0224564_10952282	3300024271	Soil	HARTRCREYDEVMGEMTSRIEDIEKQYPGINAAEAFEKGYKRGRDYYQQLCNESKAA
Ga0207665_104955343	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	AERERYSTLGKNFTEDEQFFRLGFQAALHARSRCKEYDQVLAEMSVQIEELEHQYPGSEVAEVYTRGYQRGREHYEQLCRESKAA
Ga0209523_10219981	3300027548	Forest Soil	YRLSFEAALHARTRCKEYDQTLGEMDAKIEELEQQYPGRNVTEPFSRGYERGRDYYQHLCDESRAA
Ga0208042_11886771	3300027568	Peatlands Soil	ALHARTRCKEYDQVLGEMTAQIEELERQNPGAEVAEAFQRGYERGRDYYQQLCNESKAA
Ga0209333_11089393	3300027676	Forest Soil	EQEHYANQGRKFGNDEKFYRLGFESALHARTRCKEYDQTLAEMSVEIEALECRYPGADLAEPFRKGYERGRDYYQQLCKESKAA
Ga0209328_101944222	3300027727	Forest Soil	VQVLRDAEKEHYSALGKNFGKDEKFYRLGFESALHARTRCKEYDQVYGEMTAQIEDLERQYPGVELAEPFTRGYERGRDYYQQLCNKPRAA
Ga0209908_100382132	3300027745	Thawing Permafrost	MGFESALHARTRCKEYDQVMGELTSQLEDIEKQYPGVNAAEVFQKGYERGRDYYQQLCNESKAA
Ga0209655_100676731	3300027767	Bog Forest Soil	RHAEDEHYSAGGKNFGEDEKFYRLGFESALHARTRCKEYDEVMGEMTAEIEELERQHPGGNVAEPFTRGYERGRDYYQQLCSESEAA
Ga0209772_102023331	3300027768	Bog Forest Soil	RCKEYDQVLGEMTAKIEELELQNPGAEVAEAFQRGYERGRDYYQQLCNESKAA
Ga0209060_101934032	3300027826	Surface Soil	RLGFESALHARTRCKEYDQVMGEMNAAIRDLERGNPGVDVATPFTRGYERGRDYYQELCNKSKAA
Ga0209274_107297481	3300027853	Soil	GRNFTEDEKFYRLGFESALHARTRCKEYDQVMGEMNAEIEELERQHPGVDVAEPFTRGYERGRDYYQQLCSESRAA
Ga0209579_100257991	3300027869	Surface Soil	LTEDEKFYRLGFESALHARSRCKEYDQVLSEMTARIEDLEKQYPHAAIEGPFRRGYERGRDYYQQLCDEKKAA
Ga0209579_102352251	3300027869	Surface Soil	KPGDNEKYYRLGFESALHARTRCKEYDQVMGEMNAAIRDLEQGNPGVDVATPFTRGYERGRDYYQELCNKSKAA
Ga0209579_106643411	3300027869	Surface Soil	FTEDEKFYRLGFESALHARTRCKEYDQVMGEMDAEIEDLERQHPGVDVAEPFTRGYERGRDYYQQLCSESRAA
Ga0209169_100433421	3300027879	Soil	SALHARTRCKEYDQVLAEMDAKIEEVELQYPGKQAAEPFRKGYERGRDYYQRLCEEAKVA
Ga0209169_107320241	3300027879	Soil	DEKFYRMGFESALHARTRCKEYDQVMGEMTSQIEDIEKQYPGINAAEAFEKGYKRGRDYYQQICNESKAA
Ga0209275_100058196	3300027884	Soil	SQHGKNFGNDEEFYRRGFEFALDARTRRKEYDQVVPEMKVKIQELERQYPGIEVAEPFRRGFERGRNHHQQLWSESKAA
Ga0209380_101326642	3300027889	Soil	NEKFYRMGFESALHARTRCKEYDQVMGEMTAQIEELEQQYPGAEVSEAYQRGYERGRDYYQQLCNESKAA
Ga0209624_102026341	3300027895	Forest Soil	YRMGFESALHARSRCKEYDQVMGEMTAQIEDLERQYPGVKVAEPFRRGYERGRDYYQQLCDERRAA
Ga0302155_100260311	3300028874	Bog	FEAALHARMRCKEYDQVLGEMNGKIEDLEREYPEADVAEPFRRGYERGRDYYQRLCDESKAA
Ga0308309_100178251	3300028906	Soil	YSNLGRNFTEDEKFYRLGFESALHARTRCKEYDQVMGEMNAGIEDLERQHPGVDVAEPFTRGYERGRDYYQQLCSESRAA
Ga0311327_100938234	3300029883	Bog	EHYSKFGKNLSEDEKFYRLGFEAALHARMRCKEYDQVLGEMNGKIEDLEREYPEADVAEPFRRGYERGRDYYQRLCDESKAA
Ga0311339_105676131	3300029999	Palsa	RTRCKEYDQVLAEMTVDIEELERRYPGAQVAEPFRRGYERGRDYYQRLCGESKAA
Ga0311354_117361241	3300030618	Palsa	STFGRNLSDDEKFYRLGFESALHARSRCQEYDQVAGELAAKIEELEEQYPGAEVAEPFQRGYERGRDYYQRLCDESKAA
Ga0265765_10705551	3300030879	Soil	KFYRMGFEAALHARTRCKEYDQVMGEMTAKIEDLERRYPGAKLDEPFRSGYERGRDYYQQLCDERKAA
Ga0302324_1009316861	3300031236	Palsa	AENEHYSSRGRNFSTDEQFYRLGFESALHARTRCKEYDQVLGEMSAQIEELERQHPDSEVAEPFTRGYERGRDHYQQICDKARAA
Ga0310686_1059893301	3300031708	Soil	EHYSTFARNLSDDEKFYRLGFESALHARTRCKEYDQVLGEMTAAIEDLERENPGAHVAEPFQRGYERGRDYYQRLCNESKAA
Ga0310686_1067211891	3300031708	Soil	RLGFESALHARTRCKEYDQVMGEMTAQIEDLERQYPGVDVAEPFTRGYERGRDYYQQLCSESKAA
Ga0310686_1104667111	3300031708	Soil	EHYSTFARNLSDDEKFYRLGFESALHARTRCKEYDQVLGEMTTAIEDLERENPGAHVAEPFQRGYERGRDYYQRLCNESKAA
Ga0307476_100746241	3300031715	Hardwood Forest Soil	FYRLGFESALHARTRCKEYDQVMGEMTAQIEDLERQYPGVNVAEPFTRGYERGRDYYQELCSKQNAA
Ga0307474_108998351	3300031718	Hardwood Forest Soil	NLTEDEKFYRLGFESALHARTRCKEYDQVLGEMTAKIEELELQNPGAEVAEAFQRGYERGREYYQQLCNESTAA
Ga0307473_112663441	3300031820	Hardwood Forest Soil	LGFEAALHARMRCQEYDQVVAEMSVQIEELERQYPDTEVAEAFTRGYQRGREHYQQLCSESRAA
Ga0306926_110561092	3300031954	Soil	RSAEQEHYTAIGKNFGADEKFYRMGFEAALHAQSRCKEYDQALAEMSARVEDLERQYPGEAVEEPFLRGYERGRDHYQALCDHSKAA
Ga0307479_106108542	3300031962	Hardwood Forest Soil	IFYRLGFEAALHARTRCKEYDQTLGEMDAKIEELEQQYPGRDVADPFSRGYERGRDYYQHLCDESRAA
Ga0311301_102901213	3300032160	Peatlands Soil	ESALHARTRCKEYDQVMGEMSAQIEDLERQYPGVNVAEPFTRGYERGRDYYQELCSRQKA
Ga0307472_1012837402	3300032205	Hardwood Forest Soil	YSKLGKNFTKDEQFFRLGFQAALHARSRCKEYDQVLAEMSAHIEELEHQYPGSEVAEVYTRGYQRGREHYEQLCRESKAA
Ga0348332_135474921	3300032515	Plant Litter	ARTRCKEYDQVLGEMTTAIEDLERENPGAHVAEPFQRGYERGRDYYQRLCNESKAA
Ga0335081_126422371	3300032892	Soil	FEAALHARTRCKEYDQTLGEMDAKIEDLEKQYPGRNVAEPFSRGYERGRDYYQQLCDESRAA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100644

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences