Metagenome / Metatranscriptome Family F100483

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100483
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	50 residues
Representative Sequence	MDRADAIRLLRALVAAGMDTRAPRANAWIEKKALEIGLEGHQFVSALAYA
Number of Associated Samples	75
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	10.31 %
% of genes near scaffold ends (potentially truncated)	88.24 %
% of genes from short scaffolds (< 2000 bps)	84.31 %
Associated GOLD sequencing projects	67
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (51.961 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (36.274 % of family members)
Environment Ontology (ENVO)	Unclassified (54.902 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.922 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 44.87% β-sheet: 0.00% Coil/Unstructured: 55.13%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF01135	PCMT	4.90
PF00072	Response_reg	4.90
PF01738	DLH	3.92
PF00120	Gln-synt_C	2.94
PF13531	SBP_bac_11	2.94
PF00226	DnaJ	2.94
PF03951	Gln-synt_N	1.96
PF04545	Sigma70_r4	1.96
PF13185	GAF_2	1.96
PF00536	SAM_1	0.98
PF11953	DUF3470	0.98
PF02558	ApbA	0.98
PF01988	VIT1	0.98
PF07298	NnrU	0.98
PF09140	MipZ	0.98
PF01161	PBP	0.98
PF08031	BBE	0.98
PF00211	Guanylate_cyc	0.98
PF02371	Transposase_20	0.98
PF00892	EamA	0.98
PF00775	Dioxygenase_C	0.98
PF05239	PRC	0.98
PF00497	SBP_bac_3	0.98
PF00719	Pyrophosphatase	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	4.90
COG2518	Protein-L-isoaspartate O-methyltransferase	Posttranslational modification, protein turnover, chaperones [O]	4.90
COG2519	tRNA A58 N-methylase Trm61	Translation, ribosomal structure and biogenesis [J]	4.90
COG4122	tRNA 5-hydroxyU34 O-methylase TrmR/YrrM	Translation, ribosomal structure and biogenesis [J]	4.90
COG0174	Glutamine synthetase	Amino acid transport and metabolism [E]	1.96
COG0221	Inorganic pyrophosphatase	Energy production and conversion [C]	0.98
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	0.98
COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	Cell cycle control, cell division, chromosome partitioning [D]	0.98
COG1633	Rubrerythrin, includes spore coat protein YhjR	Inorganic ion transport and metabolism [P]	0.98
COG1814	Predicted Fe2+/Mn2+ transporter, VIT1/CCC1 family	Inorganic ion transport and metabolism [P]	0.98
COG1881	Uncharacterized conserved protein, phosphatidylethanolamine-binding protein (PEBP) family	General function prediction only [R]	0.98
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.98
COG3485	Protocatechuate 3,4-dioxygenase beta subunit	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.98
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.98
COG4094	Uncharacterized membrane protein	Function unknown [S]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	51.96 %
Unclassified	root	N/A	48.04 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	51.96 %
Unclassified	root	N/A	48.04 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	51.96 %
Unclassified	root	N/A	48.04 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.04 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	37.25 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.04 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	32.35 %
Nitrospira	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.04 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	20.59 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	4.90 %
Nitrospirales	order	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.04 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	12.75 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.90 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	1.96 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.98 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.98 %
Nitrospiraceae	family	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.04 %
Nitrobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter	10.78 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.90 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	1.96 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	0.98 %
unclassified Nitrospiraceae	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae	0.98 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	0.98 %
Aquibium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Aquibium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.04 %
Nitrobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter	10.78 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4.90 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	1.96 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.98 %
Nitrospiraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium	0.98 %
Aquibium carbonis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Aquibium → Aquibium carbonis	0.98 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000655\|AF_2010_repII_A100DRAFT_1089014	Not Available	542	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10058472	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter	849	Open in IMG/M
3300005332\|Ga0066388_103771054	Not Available	773	Open in IMG/M
3300005713\|Ga0066905_100487186	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium	1022	Open in IMG/M
3300005713\|Ga0066905_101389312	Not Available	635	Open in IMG/M
3300005764\|Ga0066903_105644099	Not Available	658	Open in IMG/M
3300005764\|Ga0066903_105816471	Not Available	647	Open in IMG/M
3300005764\|Ga0066903_107440194	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter	565	Open in IMG/M
3300005764\|Ga0066903_108469965	Not Available	524	Open in IMG/M
3300006031\|Ga0066651_10826393	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300006954\|Ga0079219_11936228	Not Available	558	Open in IMG/M
3300009518\|Ga0116128_1013426	All Organisms → cellular organisms → Bacteria → Proteobacteria	2880	Open in IMG/M
3300010043\|Ga0126380_11472224	Not Available	602	Open in IMG/M
3300010359\|Ga0126376_10717582	Not Available	964	Open in IMG/M
3300010376\|Ga0126381_102344819	Not Available	766	Open in IMG/M
3300010376\|Ga0126381_102650344	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	717	Open in IMG/M
3300010376\|Ga0126381_102870227	Not Available	687	Open in IMG/M
3300010376\|Ga0126381_103231526	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter	644	Open in IMG/M
3300010376\|Ga0126381_104594193	All Organisms → cellular organisms → Bacteria → Proteobacteria	532	Open in IMG/M
3300010376\|Ga0126381_104713938	Not Available	525	Open in IMG/M
3300010398\|Ga0126383_13531004	Not Available	511	Open in IMG/M
3300010398\|Ga0126383_13608400	Not Available	505	Open in IMG/M
3300010863\|Ga0124850_1008619	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3229	Open in IMG/M
3300010868\|Ga0124844_1214116	Not Available	699	Open in IMG/M
3300010868\|Ga0124844_1243003	Not Available	636	Open in IMG/M
3300012177\|Ga0153943_1140123	Not Available	528	Open in IMG/M
3300012285\|Ga0137370_10782061	Not Available	592	Open in IMG/M
3300012971\|Ga0126369_12359019	All Organisms → cellular organisms → Bacteria	618	Open in IMG/M
3300016270\|Ga0182036_10719213	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter	809	Open in IMG/M
3300016294\|Ga0182041_10057234	All Organisms → cellular organisms → Bacteria → Proteobacteria	2672	Open in IMG/M
3300016294\|Ga0182041_11526131	Not Available	615	Open in IMG/M
3300016357\|Ga0182032_10445703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1056	Open in IMG/M
3300016357\|Ga0182032_11037970	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	701	Open in IMG/M
3300016371\|Ga0182034_11090340	Not Available	692	Open in IMG/M
3300016387\|Ga0182040_10127468	All Organisms → cellular organisms → Bacteria	1777	Open in IMG/M
3300016387\|Ga0182040_10648432	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter	859	Open in IMG/M
3300016404\|Ga0182037_10466776	All Organisms → cellular organisms → Bacteria	1052	Open in IMG/M
3300016422\|Ga0182039_10001830	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	11494	Open in IMG/M
3300016422\|Ga0182039_10250097	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1444	Open in IMG/M
3300016445\|Ga0182038_10605181	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	946	Open in IMG/M
3300016445\|Ga0182038_11129589	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter	697	Open in IMG/M
3300017823\|Ga0187818_10325445	Not Available	677	Open in IMG/M
3300017996\|Ga0187891_1005827	All Organisms → cellular organisms → Bacteria → Proteobacteria	7544	Open in IMG/M
3300018007\|Ga0187805_10253753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	806	Open in IMG/M
3300020150\|Ga0187768_1034352	Not Available	1110	Open in IMG/M
3300021420\|Ga0210394_11364715	Not Available	604	Open in IMG/M
3300021560\|Ga0126371_10350015	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter	1612	Open in IMG/M
3300021560\|Ga0126371_11838487	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter	726	Open in IMG/M
3300021560\|Ga0126371_12119571	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	678	Open in IMG/M
3300021560\|Ga0126371_13545124	Not Available	527	Open in IMG/M
3300025460\|Ga0208562_1025706	All Organisms → cellular organisms → Bacteria	1383	Open in IMG/M
3300026494\|Ga0257159_1065782	Not Available	622	Open in IMG/M
3300028047\|Ga0209526_10569768	Not Available	729	Open in IMG/M
3300030855\|Ga0075374_11285690	Not Available	581	Open in IMG/M
3300031057\|Ga0170834_110989260	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1477	Open in IMG/M
3300031122\|Ga0170822_14178821	All Organisms → cellular organisms → Bacteria → Proteobacteria	1034	Open in IMG/M
3300031231\|Ga0170824_103591853	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300031231\|Ga0170824_119896700	Not Available	659	Open in IMG/M
3300031543\|Ga0318516_10832745	Not Available	520	Open in IMG/M
3300031544\|Ga0318534_10335603	All Organisms → cellular organisms → Bacteria	871	Open in IMG/M
3300031564\|Ga0318573_10147736	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1231	Open in IMG/M
3300031572\|Ga0318515_10154230	Not Available	1225	Open in IMG/M
3300031573\|Ga0310915_10411139	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Aquibium → Aquibium carbonis	961	Open in IMG/M
3300031573\|Ga0310915_11013295	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter	579	Open in IMG/M
3300031719\|Ga0306917_10988314	Not Available	657	Open in IMG/M
3300031744\|Ga0306918_10061077	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	2548	Open in IMG/M
3300031748\|Ga0318492_10352211	All Organisms → cellular organisms → Bacteria	771	Open in IMG/M
3300031763\|Ga0318537_10011510	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2981	Open in IMG/M
3300031765\|Ga0318554_10061046	All Organisms → cellular organisms → Bacteria	2077	Open in IMG/M
3300031777\|Ga0318543_10567535	Not Available	508	Open in IMG/M
3300031781\|Ga0318547_10400211	Not Available	843	Open in IMG/M
3300031795\|Ga0318557_10094456	All Organisms → cellular organisms → Bacteria	1317	Open in IMG/M
3300031796\|Ga0318576_10422495	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300031797\|Ga0318550_10216208	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	929	Open in IMG/M
3300031805\|Ga0318497_10830741	Not Available	518	Open in IMG/M
3300031833\|Ga0310917_10569326	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter	770	Open in IMG/M
3300031833\|Ga0310917_11064911	Not Available	540	Open in IMG/M
3300031879\|Ga0306919_10339432	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1146	Open in IMG/M
3300031880\|Ga0318544_10265737	Not Available	665	Open in IMG/M
3300031890\|Ga0306925_10106663	All Organisms → cellular organisms → Bacteria	2985	Open in IMG/M
3300031910\|Ga0306923_10012786	All Organisms → cellular organisms → Bacteria	8623	Open in IMG/M
3300031910\|Ga0306923_12491606	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	510	Open in IMG/M
3300031941\|Ga0310912_11013521	Not Available	636	Open in IMG/M
3300031941\|Ga0310912_11180279	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	583	Open in IMG/M
3300031942\|Ga0310916_10931366	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	727	Open in IMG/M
3300031947\|Ga0310909_10449657	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	1081	Open in IMG/M
3300031947\|Ga0310909_11073734	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	655	Open in IMG/M
3300032035\|Ga0310911_10386377	Not Available	809	Open in IMG/M
3300032043\|Ga0318556_10519057	Not Available	623	Open in IMG/M
3300032051\|Ga0318532_10093828	Not Available	1055	Open in IMG/M
3300032059\|Ga0318533_10643288	Not Available	778	Open in IMG/M
3300032059\|Ga0318533_11035677	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter	602	Open in IMG/M
3300032066\|Ga0318514_10175272	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	1118	Open in IMG/M
3300032076\|Ga0306924_12204986	Not Available	561	Open in IMG/M
3300032205\|Ga0307472_102271898	Not Available	548	Open in IMG/M
3300032261\|Ga0306920_100200248	All Organisms → cellular organisms → Bacteria	2979	Open in IMG/M
3300033289\|Ga0310914_10766243	Not Available	862	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.02%
Host-Associated	Host-Associated	0.98%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.12%
Aquatic	Environmental → Aquatic	4.90%
Fungi	Host-Associated → Fungi	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.12%
Freshwater	Environmental → Aquatic → Freshwater	4.90%
Mycelium	Host-Associated → Fungi → Mycelium	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	82.35%
Loam	Environmental → Terrestrial → Soil → Loam	10.78%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.90%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.98%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	64.71%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.69%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.78%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.96%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.96%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.98%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.98%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.98%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.98%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	36.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	21.57%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	14.71%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	9.80%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	5.88%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.96%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.96%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.98%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.98%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.98%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.98%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009518	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300012177	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ027 MetaG	Host-Associated	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017996	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_40	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300020150	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_20_MG	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025460	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150 (SPAdes)	Environmental	Open in IMG/M
3300026494	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-A	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300030855	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA9 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031122	Oak Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A100DRAFT_10890142	3300000655	Forest Soil	MDRADAIRLLRALAAAGMNTSVPKANTWIEKKALEIGLEGSRFVSALAYAGNEGWLVDAP
AF_2010_repII_A001DRAFT_100584723	3300000793	Forest Soil	MDRADAIRLLRALAAAGMNTSVPKANTWIEKKALEIGLEGSRFV
Ga0066388_1037710541	3300005332	Tropical Forest Soil	MDRADAIRLLQALADAGMDTHASRANAWIEKKALEIGLEGGQFVSALAYAGNEGWLAD
Ga0066905_1004871863	3300005713	Tropical Forest Soil	MDRADSIRLLRALAAAGMNTRAPKANAWIHKKALEMGLEGSQFVSAIAYAGNEG
Ga0066905_1013893121	3300005713	Tropical Forest Soil	MDRADAIRLLQALVAAGMDTRAPRANTWIEKKALEIGLEGNQFVSAFTYAGNE
Ga0066903_1056440991	3300005764	Tropical Forest Soil	MDRADAIRLLRALAAAGMNTRAPKANAWIQKKALEIGLEGSHFV
Ga0066903_1058164711	3300005764	Tropical Forest Soil	MDRADAIRLLRALAAAGMNTRAPKANAWIQKKALEIGLEGSHFVGALAYAGNEGWLADA
Ga0066903_1074401941	3300005764	Tropical Forest Soil	MDRADAIRLLRALVAAGMNTRAPRANAWIEKNALEI
Ga0066903_1084699651	3300005764	Tropical Forest Soil	MDRADAIRLLRALAAAGMNTRTPKASAWIQKKALEIGLEGSHFASALAYAGNEGWFETLTNSGRA*
Ga0066651_108263931	3300006031	Soil	MDRADAIRLLQALAAAGMDTRAPRANVWIEKRALEIGLEGGQFVSALAYAG
Ga0079219_119362281	3300006954	Agricultural Soil	MDRADAIRLLQALADAGMDTRAPRANAWIEKKALEIGLEGNQFVSAL
Ga0116128_10134263	3300009518	Peatland	MDRANAIRLLIDLAAAGMDTRAPMTNAWIQKKALEIGLEGNQFVSALAYP*
Ga0126380_114722241	3300010043	Tropical Forest Soil	MDRADAIRLLQALADAGMDTRAPRANAWIEKKALEIGLDGDQFVRNEGW
Ga0126376_107175821	3300010359	Tropical Forest Soil	MDRADAMRLLQALADAGMNTRAPRTNAWIEKKALEIGLEGGQFVSALAYAGSEGWLVDAPRR
Ga0126381_1023448191	3300010376	Tropical Forest Soil	MDRADAMRLLQALADAGMDTRAPRTNAWIEKKAFEIGLEGGQFVIALAYARSKG*
Ga0126381_1026503441	3300010376	Tropical Forest Soil	MDRADAIRLLKALVAAGMDTRAPRANAWIERKALEIGLEGNQFVSAL
Ga0126381_1028702273	3300010376	Tropical Forest Soil	MDRADAIRLLRALVAAGMDTRAARANAWIETKAFEIGLEGNQFVSALAYAGNE
Ga0126381_1032315261	3300010376	Tropical Forest Soil	MDRADAIRLLRALAAAGMNTRTPKASAWIQKKALEIGLEGS
Ga0126381_1045941932	3300010376	Tropical Forest Soil	MDRADAIRLLQALVAAGMDTRAPRTNVWIEKRALEIGLEGGQFVSALAYAG
Ga0126381_1047139382	3300010376	Tropical Forest Soil	MDRADAIRLLKALVAAGMDTRAPRANAWIEKKALEIGLEGNQFVSALAYAGNEGWLADAARR
Ga0126383_135310041	3300010398	Tropical Forest Soil	MDRTDAIRLLEALVAAGMNTRAPRANAWIEKKALQIGLEGNQFVSARAYAGNEGWLVDAPVGIGLP*
Ga0126383_136084002	3300010398	Tropical Forest Soil	MDRADAIRLLQALADAGMDTHAPRANAWIEKKALEIGLEGGQ
Ga0124850_10086193	3300010863	Tropical Forest Soil	MDRADAIRLLQALAAAGMDSRAPRTNVWIEKKALEIGLEGGQFVSALAYAGS
Ga0124844_12141161	3300010868	Tropical Forest Soil	MDRADAIRLLQALADAGMDTHAPRANAWIEKKALEIGLEGNQLVSALAYAGNEGWL
Ga0124844_12430031	3300010868	Tropical Forest Soil	MDRADAIRLLQALADAGMDTHAPRANAWIEKKALEIGLEGNQLVSALAYAGNEGW
Ga0153943_11401231	3300012177	Attine Ant Fungus Gardens	MDRADTIRLLRALAAAGMNTRTAKADAWIEKKALEIGLEGIQFVSALAYAGNEGW
Ga0137370_107820611	3300012285	Vadose Zone Soil	MDRADAIRLLRALAAAGMNTRAPKANAWIQKKALEIGLEG
Ga0126369_123590192	3300012971	Tropical Forest Soil	MDRADAIRLLKALIAAGMDTRAPRANTWIEKKALEIGLEGNQFVSAFTYAGN
Ga0182036_107192133	3300016270	Soil	MDRTDAIRLLRALAAAGMNTRAPKANAWIQKKALEIGLEGS
Ga0182041_100572343	3300016294	Soil	MDRADAIRLLKALVAAGMDARAPRANAWIEKKALEIGLEGNQLVSALTYAG
Ga0182041_115261311	3300016294	Soil	MDRADAIRLLKALVAAGMDTRAPRANAWIEKKALEIGLEGNQFVSALAYAGNEGWL
Ga0182032_104457031	3300016357	Soil	MDRANAIRLLKALTAGGMDTRAPRANTWIKKKTLQIGLEGNQFVSALAYA
Ga0182032_110379701	3300016357	Soil	MDRADAIRLLKALVAAGMDTRAPRANAWIEKKALEIGLEGNQFVSALAYAGNEGWLADAA
Ga0182034_110903403	3300016371	Soil	MDRADAIRLLRALVAAGMDTRAARANAWIETKAFEIRLEGNQFVSALAYAGN
Ga0182040_101274681	3300016387	Soil	MDRADAIRLLQALADAGMDTRAPKANAWIEKKALEIGLEG
Ga0182040_106484321	3300016387	Soil	MDRADAIRLLRALAAAGMDTRAPRANAWIEKKALEIGLEGQFVSALAYAGNEGWL
Ga0182037_104667761	3300016404	Soil	MDRADAMRLLQALADAGMDTRAPRTNAWIEKKAFEIGLEGGQFASALAYAGSEG
Ga0182039_100018301	3300016422	Soil	MDRADAIRLLKALAAAGMNIYAPRANVWIEEKALEIGLEGNQFVGALT
Ga0182039_102500973	3300016422	Soil	MDRTDAIRLLEALVAAGMNARRPRANAWIEKKALEIGLEGSQFVSALAY
Ga0182038_106051812	3300016445	Soil	MDRADAIRLLQALAAAGMDTRAPKANVWIEKRALEIGLESGQFVSASHMREMRAVG
Ga0182038_111295891	3300016445	Soil	MDRADAIRLLRALAAAGMNTRAPKASAWIQKKALEIGLEGSHFASALAY
Ga0182038_116373751	3300016445	Soil	MDRADAMRLLQALADAGMDTRAPRTNAWIEKKAFEI
Ga0187818_103254451	3300017823	Freshwater Sediment	MDRSDAIRLLKALVAAGMDTRAPKANAWIQKKALEIGLEGNQFASALAYAGNEGWLVDA
Ga0187891_10058274	3300017996	Peatland	MDRANAIRLLIDLAAAGMDTRAPMTNAWIQKKALEIGLEGNQFVSALAYP
Ga0187805_102537531	3300018007	Freshwater Sediment	MDRANAIRLLKALAAAGMDTRAPMTNAWIQKKALEIGLEGNQFASALAYAGNEGW
Ga0187768_10343521	3300020150	Tropical Peatland	MDRADAIRLLRALAAAGMNARAPKANAWIQKKALEIRLEGSQFVSALA
Ga0210394_113647151	3300021420	Soil	MDRADAIRLLAALFAAGMDTRVARANVWIERKGLEIGLRGSQLASALAYAGNEGWLAD
Ga0126371_103500154	3300021560	Tropical Forest Soil	MDRADAIRLLKALVAAGMDTRAPRANTWIEKKALEIGLEGNQ
Ga0126371_118384871	3300021560	Tropical Forest Soil	MDRADAIRLLRALAAAGMNTRTPKASAWIQKKALEIGLEGSHFASALAYAGNEGW
Ga0126371_121195712	3300021560	Tropical Forest Soil	MDRADAIRLLRALADAGMDTHAPRANAWIEKKALEIGLEGSQFVSALAYAGSEGWLADAP
Ga0126371_135451241	3300021560	Tropical Forest Soil	MDRADAIRLLKALVSAALDTRAPRANAWIEKKALEIG
Ga0208562_10257063	3300025460	Peatland	MDRANAIRLLIDLAAAGMDTRAPMTNAWIQKKALEIGLEGNQF
Ga0257159_10657821	3300026494	Soil	MDRTDAIRLLESLVAAGMNTRAPRANAWIEKKALQIGLEGNQFVSALAYAGNEGWLADAPRK
Ga0209526_105697682	3300028047	Forest Soil	MDRADSMRLLRALVAAGMDTRAPRANAWIKKKALEIGLEGNQFVSAL
Ga0075374_112856901	3300030855	Soil	MDRTDAIRLLESLVAAGMNTRAPKANAWIEKKLCKL
Ga0170834_1109892601	3300031057	Forest Soil	MDRTDAIRLLESLVAAGMNTRAPKANAWIEKKALQIGLEGNQFVSALAYAGNEGWLADAPRK
Ga0170822_141788212	3300031122	Forest Soil	MDRTDAIRLLESLVAAGMNTRAPKANAWIEKKLCKLG
Ga0170824_1035918532	3300031231	Forest Soil	MDRTDAIRLLESLVAAGMNTRAPRANAWIEKKALQIGLEGNQFVSALAYAGNEGWLAD
Ga0170824_1198967002	3300031231	Forest Soil	MDRTDAIRLLESLVTAGMNTRAPKANAWIEKKALQIGLEGNQFVSALAYAGNEGWLADAP
Ga0318516_108327451	3300031543	Soil	MDRADAIRLLRALVAAGMDTRAARANAWIETKAFEIGLEGNQFVSALTY
Ga0318534_103356031	3300031544	Soil	MDRADAIRLLRALVAAGMDTRAARANAWIETKAFEIGL
Ga0318573_101477361	3300031564	Soil	MDRADAIRLLQALADAGMDTRAPKANAWIEKKAVEIGLEGAQFVSALTYAG
Ga0318515_101542303	3300031572	Soil	MDRADAIRLLRALVAAGMDTRAARANAWIETKAFEIGLEGNQFVSALAYAGNEGWLV
Ga0310915_104111391	3300031573	Soil	MDRADAIRLLQALADAGMDTRAPKANAWIEKKALE
Ga0310915_110132951	3300031573	Soil	MDRTDAIRLLRALAAAGMNTRAPKANAWIQKKALEIGLEGSHFVS
Ga0306917_109883142	3300031719	Soil	MDRADAIRLLQALADAGLDTRAPKANAWIEKKALEIGLEGDQ
Ga0306918_100610771	3300031744	Soil	MDRADAMRLLQALADAGMDTRAPRTNAWIENKAFEIGLEGGQFVSALAYAGSEGWLVDAP
Ga0318492_103522111	3300031748	Soil	MDRADAIRLLKALAAAGMNIYAPRANVWIEEKALEIGLEGNQFVGALTCWLVDAPR
Ga0318537_100115107	3300031763	Soil	MDRADAIRLLKALAAAGMNIYAPRANVWIEEKALEIGLEGNQFVGALTYA
Ga0318554_100610463	3300031765	Soil	MDRADAIRLLQALADAGMDTRAPKANAWIEQKAVEIGLEG
Ga0318543_105675351	3300031777	Soil	MDRADAMRLLQALADAGMDTRAPRTNAWIEKKALEIGLEGGQFVSALAYAGSEGWLVDAP
Ga0318547_104002112	3300031781	Soil	MPMSPDLQFQMDRTDAIRLLEALVAAGMNARRPRANAWIEKKALEIGLEGSQFVSALAYAGN
Ga0318529_105477692	3300031792	Soil	MDRADAMRLLQALADAGMDTRAPRTNAWIEKKAFEIGLE
Ga0318557_100944561	3300031795	Soil	MDRADAIRLLKALAAAGMNIYAPRANVWIEEKALEIGLEGNQ
Ga0318576_104224951	3300031796	Soil	MDRADAIRLLQALAAAGMDTRAPKANVWIEKKALEIGLEGGQFVSAVAYAGSEGWLADAPRR
Ga0318550_102162081	3300031797	Soil	MDRADAIRLLQALADAGMDTHAPRANAWIEKKALEIGLDGN
Ga0318497_108307411	3300031805	Soil	MDRADAIRLLQALADAGMDTHAPRANAWIEKKALEIGLDGNQLVSALAYAGNE
Ga0310917_105693261	3300031833	Soil	MDRADAIRLLRALVAAGMDTRAPRANAWIEKKALEIGLEGHQFVSALAYA
Ga0310917_110649112	3300031833	Soil	MDRADAIRLLRALVAAGMDTRAARANAWIETKAFEI
Ga0306919_103394323	3300031879	Soil	MDRADAIRLLKALVAAGMDTRAPRANAWIEKKALEIGLEGNQFVSALAYAGNEGW
Ga0318544_102657372	3300031880	Soil	MDRANAIRLLKALVAAGMDTRAPRANAWIEKKALEIGLEGNQFV
Ga0306925_101066635	3300031890	Soil	MDRADAMRLLQALADAGMDTRAPRTNAWIENKAFEIGLEGGQFVSALAYAGSEGWLVDA
Ga0306923_1001278612	3300031910	Soil	MDRADAMRLLQALADAGMDTRAPRTNAWIENKAFEIGLEGGQFVSALAY
Ga0306923_124916062	3300031910	Soil	MDRADAIRLLKALVAAGMDTREPRANAWIEKKALEIGLEGNQFVSALAYPG
Ga0310912_110135213	3300031941	Soil	MDRADAIRLLKALVSAGMDARAPRANAWIEKKALEIGLEGNQFVSALAYAGNEDWLADAARR
Ga0310912_111802791	3300031941	Soil	MDRADAIRLLQALAAAGMDTRAPKANVWIEKKALEIGLEGGQFVSAVA
Ga0310916_109313661	3300031942	Soil	MDRADAIRLLKALVAAGMDPRAPRANAWIEKKALEIGLEGNQFVSALAYAGNEGWLAD
Ga0310913_100976781	3300031945	Soil	MDRADAMRLLQALADAGTDTRAPRTNAWIENKAFEIGLEG
Ga0310909_104496573	3300031947	Soil	MDRADAIRLLQALADAGMDTHAPRANAWIEKKALEIGLDGNQLVSALAYAGNEGWLA
Ga0310909_110737342	3300031947	Soil	MDRANAIRLLKALTAGGMDTRAPRANTWIEKKALQIGLEGN
Ga0310911_103863772	3300032035	Soil	MDRADAIRLLKALVSAGMDARAPRANAWIEKKALEIGLEGNQFVSALA
Ga0318549_102650441	3300032041	Soil	MDRADAMRLLQALADAGMDTRAPRTNAWIEKIAFE
Ga0318556_105190572	3300032043	Soil	MDRADAIRLLRALVAAGMDTRAARANAWIETKAFEIRLECNQFVS
Ga0318532_100938281	3300032051	Soil	MDRADAMRLLQALADAGMDTRAPRTNAWIEKKALEIGLEGGQFVSALAYAGSEGWLVDAPRR
Ga0318575_100106561	3300032055	Soil	MDRADAMRLLQALADAGMDTRAPRTNAWIEKKALE
Ga0318533_106432881	3300032059	Soil	MSPDLQFQMDRTDAIRLLEALVAAGMNARRSRANAWIEKKALEIGLEGSQFVSALAYAGN
Ga0318533_110356771	3300032059	Soil	MDRADAIRLLRALAAAGMNTRAPKASAWIQRKALEI
Ga0318514_101752721	3300032066	Soil	MDRADAIRLLQALADAGMDTRAPKANAWIEKKAVEIGLEGAQFVSALTY
Ga0306924_122049862	3300032076	Soil	MDRADAIRLLQALADAGMDTRAPKANAWIEKKALEIGLEGDQFVSALTYAGNEGW
Ga0307472_1022718983	3300032205	Hardwood Forest Soil	MDRADAIRLLQALADAGMDTRAPKANAWIEKKAVEIGLEGAQFVSALTYAGNE
Ga0306920_1002002484	3300032261	Soil	MDRADAIRLLKALVAAGMDARAPRANAWIEKKALEIGLEGNQLVSALTYAGN
Ga0310914_107662431	3300033289	Soil	MDRADAIRLLQALADAGMDTHAPRANAWIEKKALEIGLDGNQLVS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100483

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences