Basic Information | |
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Family ID | F100172 |
Family Type | Metagenome |
Number of Sequences | 102 |
Average Sequence Length | 42 residues |
Representative Sequence | MLTFTSILAGFALFEVLALRHGAESRPGFDERPLRAARRDI |
Number of Associated Samples | 38 |
Number of Associated Scaffolds | 102 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 50.98 % |
% of genes near scaffold ends (potentially truncated) | 9.80 % |
% of genes from short scaffolds (< 2000 bps) | 69.61 % |
Associated GOLD sequencing projects | 38 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.42 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (89.216 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand (47.059 % of family members) |
Environment Ontology (ENVO) | Unclassified (47.059 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (61.765 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 30.43% β-sheet: 0.00% Coil/Unstructured: 69.57% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.42 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Polar Desert Polar Desert Sand Soil Soil Serpentine Soil Glacier Forefield Soil Sub-Biocrust Soil Soil Soil Soil Miscanthus Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
Ga0126313_100108273 | 3300009840 | Serpentine Soil | MFIAITLLAGFALFEVLAYRHGAESRPGFDERLVRGAQRNI* |
Ga0126309_109484252 | 3300010039 | Serpentine Soil | MVLFASIITGFGLFEVLVLRYGAESRPGFDERPERGPHRNL* |
Ga0136627_10944272 | 3300012042 | Polar Desert Sand | MLLLTSLLAGFALFEVLAYRHGAESRPGFDERPVRAARRNI* |
Ga0136631_100036035 | 3300012043 | Polar Desert Sand | MCPVLTLVSIAAGFALFEVLAMTHGAESRPGFDERPERGSRRDI* |
Ga0136631_100089602 | 3300012043 | Polar Desert Sand | MLDMLLFTSSLAAFALFEVLAHRYGAESRPGFDERLEHGHRRNV* |
Ga0136631_100101585 | 3300012043 | Polar Desert Sand | MLTLASILAGFAAFEVLALRHGAESRPGFDERPLRAARRDI* |
Ga0136631_100126503 | 3300012043 | Polar Desert Sand | MLFVVLFASIITAFGLFEVLALRYGAESRPGFDERPERGPYRKL* |
Ga0136631_100689232 | 3300012043 | Polar Desert Sand | MLTFTSILAGFALFEVLALRHGAESRPGFDERPLRAARRDI* |
Ga0136631_101877962 | 3300012043 | Polar Desert Sand | MSSMVLFASLLTAFGLFEALAYRYGAESRPGFDERLEHGHRRNL* |
Ga0136631_102647262 | 3300012043 | Polar Desert Sand | MHDMSILTSSLAAFALFEVLAHRYGAESRPGFDERPEHGHRRNV* |
Ga0136631_103294702 | 3300012043 | Polar Desert Sand | MLLLTSLLAGFALFEVLAYRHGAESRPGFDERPVRAAHRNI* |
Ga0136631_104125512 | 3300012043 | Polar Desert Sand | MFENARMVLLTSLLTAVALFEVLALRYGAESRPIFDERPERGHRRNL* |
Ga0136623_100217073 | 3300012045 | Polar Desert Sand | MLTFASILAGFAAFEALALRHGAESRPGFDERPLRAARRDV* |
Ga0136623_102408971 | 3300012045 | Polar Desert Sand | MITAASILAGFALFEVLAYRFGAESRPGFDERPEREPYRRNG* |
Ga0136621_10056693 | 3300012092 | Polar Desert Sand | MLTSICILAGFALFEVLALRHGAESRPGFDERPLRAARRDI* |
Ga0136621_11920342 | 3300012092 | Polar Desert Sand | MHGMLLFTSLLSAFAIFEVLAYRYGAESRPGFDERPERGPRRSL* |
Ga0136619_100193212 | 3300012185 | Polar Desert Sand | MFENARMVLLASLLTAVALFEVLALRYGAESRPIFDERPERGHRRNL* |
Ga0136620_100015611 | 3300012186 | Polar Desert Sand | MFENARMVLLTSLLTAVALFEVLALRYGAESRPIFDERPERG |
Ga0136620_100274664 | 3300012186 | Polar Desert Sand | FENARMVLLTSLLTAVALFEVLALRYGAESRPIFDERPERGHRRNL* |
Ga0136620_100777472 | 3300012186 | Polar Desert Sand | MLTFVSILAGFAAFEALALRHGAESRPGFDERPLRAARRDV* |
Ga0136620_102563781 | 3300012186 | Polar Desert Sand | MVLLTSLLTAVALFEVLALRYGAESRPIFDERPERG |
Ga0136618_100048163 | 3300012188 | Polar Desert Sand | MFENARMVLLASLLSAVALFEVLALRYGAESRPIFDERPERGHRRNL* |
Ga0136633_100001866 | 3300012527 | Polar Desert Sand | MRGMLLFTSLLSAFAIFEVLAYRYGAESRPGFDERPERGPRRSL* |
Ga0136633_10066426 | 3300012527 | Polar Desert Sand | MLILSSLAAFGLFEVLALRYGAESRPGFDERPEREPRRNL* |
Ga0136633_10301522 | 3300012527 | Polar Desert Sand | MLIAISLLAGFALFEVLAYRHGAESRPGFDERLTHETRRNI* |
Ga0136633_10444823 | 3300012527 | Polar Desert Sand | MFPMLTFASILAGFAAFEVLALRHGADSRPGFDERPLRAARRNI* |
Ga0136615_1000078111 | 3300012678 | Polar Desert Sand | MISAYSILAGFALFEVLAYRYGAESRPGFDERPEREPYRHNV* |
Ga0136616_100400923 | 3300012679 | Polar Desert Sand | MLTSVCILAGFALFEVLALRHGAESRPGFDERPLRAARRDI* |
Ga0136612_100676932 | 3300012680 | Polar Desert Sand | MHDMLILTSSLAAFALFEVLAHRYGAESRPGFDERLEHGHRRNV* |
Ga0136612_101504472 | 3300012680 | Polar Desert Sand | VLTSICILAGFALFEVLALRHGAESRPGFDERPLRAARRDI* |
Ga0136612_105788502 | 3300012680 | Polar Desert Sand | MLLVTALLTAFGVFEVLAYRHGAESRPGFDERPERGPRRSL* |
Ga0136612_105802891 | 3300012680 | Polar Desert Sand | MPSMLIFSSLLSAFGLFEVLAYRYGAESRPVFDERLERGHRRNL* |
Ga0136613_100638871 | 3300012681 | Polar Desert Sand | MLTFASILAGFAAFEALALRHGAESRPGFDERPLRA |
Ga0136613_101174292 | 3300012681 | Polar Desert Sand | MSFMLTFASILAGFAAFEALALRHGAESRPGFDERPLRAARRDV* |
Ga0136613_107613092 | 3300012681 | Polar Desert Sand | MLTFASILAGFAAFEALALRHGAESRPGFDERPLRAAR |
Ga0136614_101946803 | 3300012684 | Polar Desert Sand | MITAASILAGFALFEVLAYRYGAESRPGFDERPEREPYRRNV* |
Ga0136614_102786572 | 3300012684 | Polar Desert Sand | MITAILTLTGFALFEVLAYRYGAESRPGFDERPERAPYRHNV* |
Ga0136614_103064882 | 3300012684 | Polar Desert Sand | MLTSFCILAGFALFEVLALRHGAESRPGFDERPLRAARRDI* |
Ga0136614_105096252 | 3300012684 | Polar Desert Sand | MLLFTSLLSAFAIFEVLAYRYGAESRPGFDERPERGPHRSL* |
Ga0136614_111827311 | 3300012684 | Polar Desert Sand | LLTAVALFEVLALRYGAESRPIFDERPERGHRRNL* |
Ga0157375_135718622 | 3300013308 | Miscanthus Rhizosphere | IAAFGLFEVLAVRYGADSRPFFDERPERAHRRSL* |
Ga0182001_104114202 | 3300014488 | Soil | MSMITVSSLFAGFALFEVLAYRYGAESRHGFDERPEREPYRHNV* |
Ga0167630_10610011 | 3300015159 | Glacier Forefield Soil | MVDHVRMITFASILAGFALFEVLAYRQGADSRPGFDERPERGPSRDI* |
Ga0167665_100000837 | 3300015163 | Glacier Forefield Soil | MFVLAATIAAFAIFAILALRHGAESRPFFDERPERGCDRIR* |
Ga0167665_10001134 | 3300015163 | Glacier Forefield Soil | MLTFTSILAGFALFEVLAYRQGAESRRGFDERPERGPSRNI* |
Ga0167664_10122132 | 3300015208 | Glacier Forefield Soil | MLILTSLITAFAAFEVLAYRYGTESRPGFDERPDRARRRGR* |
Ga0167664_11309521 | 3300015208 | Glacier Forefield Soil | MSLFFVLLVAFVLFEVLTYRYGADSRPVFDERPERERRRNL* |
Ga0183260_100027092 | 3300017787 | Polar Desert Sand | MFENARMVLLASLLSAVALFEVLALRYGAESRPIFDERPERGHRRNL |
Ga0183260_100360055 | 3300017787 | Polar Desert Sand | MITAISILTGFALFEVLAYRYGAESRPGFDERPERAPYRHNV |
Ga0183260_100550063 | 3300017787 | Polar Desert Sand | MVLISLIAAFGLFEVLALRYGAESRPGFDERPERGPYRKL |
Ga0183260_101200562 | 3300017787 | Polar Desert Sand | MSPMLTFASILAGFAAFEALALRHGAESRPGFDERPLRAARRDV |
Ga0183260_102153432 | 3300017787 | Polar Desert Sand | MLTSICILAGFALFEVLALRHGAESRPGFDERPLRAARRDI |
Ga0183260_109072982 | 3300017787 | Polar Desert Sand | MITAASILAGFALFEVLAYRYGAESRPGFDERPEREPYRRNV |
Ga0136617_100075958 | 3300017789 | Polar Desert Sand | MFENARMVLLTSLLTAVALFEVLALRYGAESRPIFDERPERGHRRNL |
Ga0136617_103159572 | 3300017789 | Polar Desert Sand | MLLFASALAAFGIFEVLACRYGAEPRPVFDERLERGRRRSL |
Ga0136617_106537842 | 3300017789 | Polar Desert Sand | MITAILTLTGFALFEVLAYRYGAESRPGFDERPERAPYRHNV |
Ga0136617_108240922 | 3300017789 | Polar Desert Sand | MLIFSSLLAAFGLFEVLAYRYGAESRPVFDERLERGHRRNL |
Ga0190265_107261912 | 3300018422 | Soil | MVLFASIIAAFGLFEVLVLRYGAESRPGFDERPERGPYRSI |
Ga0190265_108052212 | 3300018422 | Soil | MSSMITFTSILAGFALFEVLAHRHGAESRPGFDERPEREPHRDI |
Ga0190265_120379742 | 3300018422 | Soil | MISAFSILAGFALLEVLAYRYGAESRPGFDERPEREPYRHNA |
Ga0190265_137752341 | 3300018422 | Soil | MSFMITFTSILAGLALFEVLALRHGAETRPGFDERPERGPHHTI |
Ga0190275_100443952 | 3300018432 | Soil | MLTFASILAGFAAFEVLALRHGAESRPGFDERPLRAARRNI |
Ga0190275_101488913 | 3300018432 | Soil | MLLFTSLLAAFGLFEVLVYRHGADTRPGFDERPERAPYRNI |
Ga0190275_102885822 | 3300018432 | Soil | MVLFASIITAFGLFEVLALRYGAESRPGFDERPERAPYRNL |
Ga0190275_105868722 | 3300018432 | Soil | MWSMITFTSILAGFALFEVLAHRHGVESRPGFDERPEREPHRDI |
Ga0190275_108582401 | 3300018432 | Soil | MLTLASIIAGFALFEVLALRHGAESRPGFDERPLRAARRNI |
Ga0190275_109632782 | 3300018432 | Soil | MILFASLITAFGLFEVLALRYGADSRPVFDERPERGHRRNL |
Ga0190275_113039082 | 3300018432 | Soil | MFPMLTFALIGAAFALFEVLALRHGAESRPGFDERLLRAARRNL |
Ga0190275_130197902 | 3300018432 | Soil | MLILASILAGFAAFEVLALTHGAESRPGFDERPERGSRRNI |
Ga0190268_100084572 | 3300018466 | Soil | MLTLASIIVGFAAFEVLALTHGAESRPGFDERPERGSRRNI |
Ga0190268_100379952 | 3300018466 | Soil | MIVLTSLLAAFGLFEVLAYRYGAESRPGFDERPEHGLRRNLP |
Ga0190268_114946822 | 3300018466 | Soil | MITLATIIAGFAAFEVLALTHGAESRPGFDERPERGHRRNI |
Ga0190264_108344002 | 3300019377 | Soil | MLTFASIIAGFAVFEVLALRHGAESRPGFDERPLRAARRDI |
Ga0190267_100009435 | 3300019767 | Soil | VVIMSSMVILASVITAFAAFEVLAYRYGAESRPVFDERPERGPARNLR |
Ga0190267_101422392 | 3300019767 | Soil | MYSMITFTSILAGFALFEVLAHRHGAETRPGFDERPERGPHRDI |
Ga0190267_101758432 | 3300019767 | Soil | MLIATTILAGFALFEVLAYRHGAESRHGFDERLERGSSRNI |
Ga0190267_104365082 | 3300019767 | Soil | MLTFISLIAAFGLFEVLAYRSGAESRHGFDERLEHGHRRNI |
Ga0190267_107259422 | 3300019767 | Soil | MIVFTSLLAAFGLFEVLAYRYGAESRPGFDERPEHGLRRNLP |
Ga0190267_111900982 | 3300019767 | Soil | DHVLMLTLASILAGFAAFEVLALRRGAESRPGFDERPLRAARRNI |
Ga0190267_112699592 | 3300019767 | Soil | MITFTTILAGFALFEVLAHRHGAETRPGFDERPERGPHRDI |
Ga0190267_113021382 | 3300019767 | Soil | MSMLTFTSLIAALGLFEVLAYRSGAESRPGFDERPEHGHRRNV |
Ga0190267_116264041 | 3300019767 | Soil | ILAGFALFEVLAHRHGAETRPGFDERPERGPHRDI |
Ga0196958_100189542 | 3300020181 | Soil | MLILASIIVGFATFEVLALTHGAESRPGFDERPERGPRRNI |
Ga0196958_100896002 | 3300020181 | Soil | MLIFASILAGFAAFEVLALTHGAESRPGFDERPERGSRRNI |
Ga0208736_10001145 | 3300027618 | Polar Desert | MFENARMVLLTSLLSAVALFEVLALRYGAESRPIFDERPERGHRRNL |
Ga0208736_10103924 | 3300027618 | Polar Desert | MLTFTSILAGFALFEVLALRHGAESRPGFDERPLRAARRDI |
Ga0208736_10587592 | 3300027618 | Polar Desert | MLDMLLFTSSLAAFALFEVLAHRYGAESRPGFDERLEHGHRRNV |
Ga0247708_10044472 | 3300028005 | Soil | MITFTAILAGFTLFEVLAFRHGAETRPGFDERPERAPHRHTV |
Ga0247708_10068462 | 3300028005 | Soil | MPIMSTMIIFTTVIAGFALFEVLALRHGAESRPGFDERPERAPQRII |
Ga0247708_10085312 | 3300028005 | Soil | MLITASILAGLALFEVLAYSHGAETRPGFDERPERGPRRNI |
Ga0247704_10071742 | 3300028040 | Soil | MLTLASIIVGFATFEVLALTHGAESRRGFDERPERGPRRSI |
Ga0247704_10314612 | 3300028040 | Soil | MLLLLSAIAFALFELLAFRYGAESRPFFDERLERGPARAI |
Ga0247704_10681751 | 3300028040 | Soil | MITFASILVGFAAFEVLALTHGAESRPGFDERPERAPRRNI |
Ga0307288_104026101 | 3300028778 | Soil | ADHVGMLLFASAVTAFGLFEMLAYRYGADTRPGFDERPERGPRNTV |
Ga0307502_100125052 | 3300031164 | Soil | MLTITSISILAGFALFEVLAYRAGADSRPGFDERPERGPHRNI |
Ga0307502_100206802 | 3300031164 | Soil | MLTITSISILAGFALFEVLAYRVGADSRPGFDERPERGSHRNI |
Ga0299913_101223434 | 3300031229 | Soil | MLIVTSILAGFALFEVLAYRHGAESRPGFDERLEHGPYHSI |
Ga0310813_105659712 | 3300031716 | Soil | MLLATSLLAFGIFEALALRYGAESRPGFDERPERDRR |
Ga0334944_074169_244_369 | 3300034009 | Sub-Biocrust Soil | MLIFTSLITAFGLFEVLAYRYGAESRPVFDERLEHGPRRNV |
Ga0372943_0469240_380_505 | 3300034268 | Soil | MVLFASAVAAFGLFELLALRHGAESRPFFDERPERGRPRNI |
Ga0334931_134432_406_540 | 3300034377 | Sub-Biocrust Soil | MSMITVSSILAGFALFEVLAYRYGAESRPGFDGRPEREPHRHNV |
Ga0334931_141257_290_415 | 3300034377 | Sub-Biocrust Soil | MLILASAITAFGLFEVLAYRYGADSRPGFDERPERAPRNTV |
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