NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F100172

Metagenome Family F100172

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F100172
Family Type Metagenome
Number of Sequences 102
Average Sequence Length 42 residues
Representative Sequence MLTFTSILAGFALFEVLALRHGAESRPGFDERPLRAARRDI
Number of Associated Samples 38
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 50.98 %
% of genes near scaffold ends (potentially truncated) 9.80 %
% of genes from short scaffolds (< 2000 bps) 69.61 %
Associated GOLD sequencing projects 38
AlphaFold2 3D model prediction Yes
3D model pTM-score0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (89.216 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand
(47.059 % of family members)
Environment Ontology (ENVO) Unclassified
(47.059 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(61.765 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50
1Ga0126313_100108273
2Ga0126309_109484252
3Ga0136627_10944272
4Ga0136631_100036035
5Ga0136631_100089602
6Ga0136631_100101585
7Ga0136631_100126503
8Ga0136631_100689232
9Ga0136631_101877962
10Ga0136631_102647262
11Ga0136631_103294702
12Ga0136631_104125512
13Ga0136623_100217073
14Ga0136623_102408971
15Ga0136621_10056693
16Ga0136621_11920342
17Ga0136619_100193212
18Ga0136620_100015611
19Ga0136620_100274664
20Ga0136620_100777472
21Ga0136620_102563781
22Ga0136618_100048163
23Ga0136633_100001866
24Ga0136633_10066426
25Ga0136633_10301522
26Ga0136633_10444823
27Ga0136615_1000078111
28Ga0136616_100400923
29Ga0136612_100676932
30Ga0136612_101504472
31Ga0136612_105788502
32Ga0136612_105802891
33Ga0136613_100638871
34Ga0136613_101174292
35Ga0136613_107613092
36Ga0136614_101946803
37Ga0136614_102786572
38Ga0136614_103064882
39Ga0136614_105096252
40Ga0136614_111827311
41Ga0157375_135718622
42Ga0182001_104114202
43Ga0167630_10610011
44Ga0167665_100000837
45Ga0167665_10001134
46Ga0167664_10122132
47Ga0167664_11309521
48Ga0183260_100027092
49Ga0183260_100360055
50Ga0183260_100550063
51Ga0183260_101200562
52Ga0183260_102153432
53Ga0183260_109072982
54Ga0136617_100075958
55Ga0136617_103159572
56Ga0136617_106537842
57Ga0136617_108240922
58Ga0190265_107261912
59Ga0190265_108052212
60Ga0190265_120379742
61Ga0190265_137752341
62Ga0190275_100443952
63Ga0190275_101488913
64Ga0190275_102885822
65Ga0190275_105868722
66Ga0190275_108582401
67Ga0190275_109632782
68Ga0190275_113039082
69Ga0190275_130197902
70Ga0190268_100084572
71Ga0190268_100379952
72Ga0190268_114946822
73Ga0190264_108344002
74Ga0190267_100009435
75Ga0190267_101422392
76Ga0190267_101758432
77Ga0190267_104365082
78Ga0190267_107259422
79Ga0190267_111900982
80Ga0190267_112699592
81Ga0190267_113021382
82Ga0190267_116264041
83Ga0196958_100189542
84Ga0196958_100896002
85Ga0208736_10001145
86Ga0208736_10103924
87Ga0208736_10587592
88Ga0247708_10044472
89Ga0247708_10068462
90Ga0247708_10085312
91Ga0247704_10071742
92Ga0247704_10314612
93Ga0247704_10681751
94Ga0307288_104026101
95Ga0307502_100125052
96Ga0307502_100206802
97Ga0299913_101223434
98Ga0310813_105659712
99Ga0334944_074169_244_369
100Ga0372943_0469240_380_505
101Ga0334931_134432_406_540
102Ga0334931_141257_290_415
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 30.43%    β-sheet: 0.00%    Coil/Unstructured: 69.57%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

510152025303540MLTFTSILAGFALFEVLALRHGAESRPGFDERPLRAARRDISequenceα-helicesβ-strandsCoilSS Conf. score
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer

WebGL does not seem to be available.

This can be caused by an outdated browser, graphics card driver issue, or bad weather. Sometimes, just restarting the browser helps. Also, make sure hardware acceleration is enabled in your browser.

For a list of supported browsers, refer to http://caniuse.com/#feat=webgl.

Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.42
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
89.2%10.8%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Polar Desert
Polar Desert Sand
Soil
Soil
Serpentine Soil
Glacier Forefield Soil
Sub-Biocrust Soil
Soil
Soil
Soil
Miscanthus Rhizosphere
2.9%47.1%34.3%4.9%2.9%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0126313_1001082733300009840Serpentine SoilMFIAITLLAGFALFEVLAYRHGAESRPGFDERLVRGAQRNI*
Ga0126309_1094842523300010039Serpentine SoilMVLFASIITGFGLFEVLVLRYGAESRPGFDERPERGPHRNL*
Ga0136627_109442723300012042Polar Desert SandMLLLTSLLAGFALFEVLAYRHGAESRPGFDERPVRAARRNI*
Ga0136631_1000360353300012043Polar Desert SandMCPVLTLVSIAAGFALFEVLAMTHGAESRPGFDERPERGSRRDI*
Ga0136631_1000896023300012043Polar Desert SandMLDMLLFTSSLAAFALFEVLAHRYGAESRPGFDERLEHGHRRNV*
Ga0136631_1001015853300012043Polar Desert SandMLTLASILAGFAAFEVLALRHGAESRPGFDERPLRAARRDI*
Ga0136631_1001265033300012043Polar Desert SandMLFVVLFASIITAFGLFEVLALRYGAESRPGFDERPERGPYRKL*
Ga0136631_1006892323300012043Polar Desert SandMLTFTSILAGFALFEVLALRHGAESRPGFDERPLRAARRDI*
Ga0136631_1018779623300012043Polar Desert SandMSSMVLFASLLTAFGLFEALAYRYGAESRPGFDERLEHGHRRNL*
Ga0136631_1026472623300012043Polar Desert SandMHDMSILTSSLAAFALFEVLAHRYGAESRPGFDERPEHGHRRNV*
Ga0136631_1032947023300012043Polar Desert SandMLLLTSLLAGFALFEVLAYRHGAESRPGFDERPVRAAHRNI*
Ga0136631_1041255123300012043Polar Desert SandMFENARMVLLTSLLTAVALFEVLALRYGAESRPIFDERPERGHRRNL*
Ga0136623_1002170733300012045Polar Desert SandMLTFASILAGFAAFEALALRHGAESRPGFDERPLRAARRDV*
Ga0136623_1024089713300012045Polar Desert SandMITAASILAGFALFEVLAYRFGAESRPGFDERPEREPYRRNG*
Ga0136621_100566933300012092Polar Desert SandMLTSICILAGFALFEVLALRHGAESRPGFDERPLRAARRDI*
Ga0136621_119203423300012092Polar Desert SandMHGMLLFTSLLSAFAIFEVLAYRYGAESRPGFDERPERGPRRSL*
Ga0136619_1001932123300012185Polar Desert SandMFENARMVLLASLLTAVALFEVLALRYGAESRPIFDERPERGHRRNL*
Ga0136620_1000156113300012186Polar Desert SandMFENARMVLLTSLLTAVALFEVLALRYGAESRPIFDERPERG
Ga0136620_1002746643300012186Polar Desert SandFENARMVLLTSLLTAVALFEVLALRYGAESRPIFDERPERGHRRNL*
Ga0136620_1007774723300012186Polar Desert SandMLTFVSILAGFAAFEALALRHGAESRPGFDERPLRAARRDV*
Ga0136620_1025637813300012186Polar Desert SandMVLLTSLLTAVALFEVLALRYGAESRPIFDERPERG
Ga0136618_1000481633300012188Polar Desert SandMFENARMVLLASLLSAVALFEVLALRYGAESRPIFDERPERGHRRNL*
Ga0136633_1000018663300012527Polar Desert SandMRGMLLFTSLLSAFAIFEVLAYRYGAESRPGFDERPERGPRRSL*
Ga0136633_100664263300012527Polar Desert SandMLILSSLAAFGLFEVLALRYGAESRPGFDERPEREPRRNL*
Ga0136633_103015223300012527Polar Desert SandMLIAISLLAGFALFEVLAYRHGAESRPGFDERLTHETRRNI*
Ga0136633_104448233300012527Polar Desert SandMFPMLTFASILAGFAAFEVLALRHGADSRPGFDERPLRAARRNI*
Ga0136615_10000781113300012678Polar Desert SandMISAYSILAGFALFEVLAYRYGAESRPGFDERPEREPYRHNV*
Ga0136616_1004009233300012679Polar Desert SandMLTSVCILAGFALFEVLALRHGAESRPGFDERPLRAARRDI*
Ga0136612_1006769323300012680Polar Desert SandMHDMLILTSSLAAFALFEVLAHRYGAESRPGFDERLEHGHRRNV*
Ga0136612_1015044723300012680Polar Desert SandVLTSICILAGFALFEVLALRHGAESRPGFDERPLRAARRDI*
Ga0136612_1057885023300012680Polar Desert SandMLLVTALLTAFGVFEVLAYRHGAESRPGFDERPERGPRRSL*
Ga0136612_1058028913300012680Polar Desert SandMPSMLIFSSLLSAFGLFEVLAYRYGAESRPVFDERLERGHRRNL*
Ga0136613_1006388713300012681Polar Desert SandMLTFASILAGFAAFEALALRHGAESRPGFDERPLRA
Ga0136613_1011742923300012681Polar Desert SandMSFMLTFASILAGFAAFEALALRHGAESRPGFDERPLRAARRDV*
Ga0136613_1076130923300012681Polar Desert SandMLTFASILAGFAAFEALALRHGAESRPGFDERPLRAAR
Ga0136614_1019468033300012684Polar Desert SandMITAASILAGFALFEVLAYRYGAESRPGFDERPEREPYRRNV*
Ga0136614_1027865723300012684Polar Desert SandMITAILTLTGFALFEVLAYRYGAESRPGFDERPERAPYRHNV*
Ga0136614_1030648823300012684Polar Desert SandMLTSFCILAGFALFEVLALRHGAESRPGFDERPLRAARRDI*
Ga0136614_1050962523300012684Polar Desert SandMLLFTSLLSAFAIFEVLAYRYGAESRPGFDERPERGPHRSL*
Ga0136614_1118273113300012684Polar Desert SandLLTAVALFEVLALRYGAESRPIFDERPERGHRRNL*
Ga0157375_1357186223300013308Miscanthus RhizosphereIAAFGLFEVLAVRYGADSRPFFDERPERAHRRSL*
Ga0182001_1041142023300014488SoilMSMITVSSLFAGFALFEVLAYRYGAESRHGFDERPEREPYRHNV*
Ga0167630_106100113300015159Glacier Forefield SoilMVDHVRMITFASILAGFALFEVLAYRQGADSRPGFDERPERGPSRDI*
Ga0167665_1000008373300015163Glacier Forefield SoilMFVLAATIAAFAIFAILALRHGAESRPFFDERPERGCDRIR*
Ga0167665_100011343300015163Glacier Forefield SoilMLTFTSILAGFALFEVLAYRQGAESRRGFDERPERGPSRNI*
Ga0167664_101221323300015208Glacier Forefield SoilMLILTSLITAFAAFEVLAYRYGTESRPGFDERPDRARRRGR*
Ga0167664_113095213300015208Glacier Forefield SoilMSLFFVLLVAFVLFEVLTYRYGADSRPVFDERPERERRRNL*
Ga0183260_1000270923300017787Polar Desert SandMFENARMVLLASLLSAVALFEVLALRYGAESRPIFDERPERGHRRNL
Ga0183260_1003600553300017787Polar Desert SandMITAISILTGFALFEVLAYRYGAESRPGFDERPERAPYRHNV
Ga0183260_1005500633300017787Polar Desert SandMVLISLIAAFGLFEVLALRYGAESRPGFDERPERGPYRKL
Ga0183260_1012005623300017787Polar Desert SandMSPMLTFASILAGFAAFEALALRHGAESRPGFDERPLRAARRDV
Ga0183260_1021534323300017787Polar Desert SandMLTSICILAGFALFEVLALRHGAESRPGFDERPLRAARRDI
Ga0183260_1090729823300017787Polar Desert SandMITAASILAGFALFEVLAYRYGAESRPGFDERPEREPYRRNV
Ga0136617_1000759583300017789Polar Desert SandMFENARMVLLTSLLTAVALFEVLALRYGAESRPIFDERPERGHRRNL
Ga0136617_1031595723300017789Polar Desert SandMLLFASALAAFGIFEVLACRYGAEPRPVFDERLERGRRRSL
Ga0136617_1065378423300017789Polar Desert SandMITAILTLTGFALFEVLAYRYGAESRPGFDERPERAPYRHNV
Ga0136617_1082409223300017789Polar Desert SandMLIFSSLLAAFGLFEVLAYRYGAESRPVFDERLERGHRRNL
Ga0190265_1072619123300018422SoilMVLFASIIAAFGLFEVLVLRYGAESRPGFDERPERGPYRSI
Ga0190265_1080522123300018422SoilMSSMITFTSILAGFALFEVLAHRHGAESRPGFDERPEREPHRDI
Ga0190265_1203797423300018422SoilMISAFSILAGFALLEVLAYRYGAESRPGFDERPEREPYRHNA
Ga0190265_1377523413300018422SoilMSFMITFTSILAGLALFEVLALRHGAETRPGFDERPERGPHHTI
Ga0190275_1004439523300018432SoilMLTFASILAGFAAFEVLALRHGAESRPGFDERPLRAARRNI
Ga0190275_1014889133300018432SoilMLLFTSLLAAFGLFEVLVYRHGADTRPGFDERPERAPYRNI
Ga0190275_1028858223300018432SoilMVLFASIITAFGLFEVLALRYGAESRPGFDERPERAPYRNL
Ga0190275_1058687223300018432SoilMWSMITFTSILAGFALFEVLAHRHGVESRPGFDERPEREPHRDI
Ga0190275_1085824013300018432SoilMLTLASIIAGFALFEVLALRHGAESRPGFDERPLRAARRNI
Ga0190275_1096327823300018432SoilMILFASLITAFGLFEVLALRYGADSRPVFDERPERGHRRNL
Ga0190275_1130390823300018432SoilMFPMLTFALIGAAFALFEVLALRHGAESRPGFDERLLRAARRNL
Ga0190275_1301979023300018432SoilMLILASILAGFAAFEVLALTHGAESRPGFDERPERGSRRNI
Ga0190268_1000845723300018466SoilMLTLASIIVGFAAFEVLALTHGAESRPGFDERPERGSRRNI
Ga0190268_1003799523300018466SoilMIVLTSLLAAFGLFEVLAYRYGAESRPGFDERPEHGLRRNLP
Ga0190268_1149468223300018466SoilMITLATIIAGFAAFEVLALTHGAESRPGFDERPERGHRRNI
Ga0190264_1083440023300019377SoilMLTFASIIAGFAVFEVLALRHGAESRPGFDERPLRAARRDI
Ga0190267_1000094353300019767SoilVVIMSSMVILASVITAFAAFEVLAYRYGAESRPVFDERPERGPARNLR
Ga0190267_1014223923300019767SoilMYSMITFTSILAGFALFEVLAHRHGAETRPGFDERPERGPHRDI
Ga0190267_1017584323300019767SoilMLIATTILAGFALFEVLAYRHGAESRHGFDERLERGSSRNI
Ga0190267_1043650823300019767SoilMLTFISLIAAFGLFEVLAYRSGAESRHGFDERLEHGHRRNI
Ga0190267_1072594223300019767SoilMIVFTSLLAAFGLFEVLAYRYGAESRPGFDERPEHGLRRNLP
Ga0190267_1119009823300019767SoilDHVLMLTLASILAGFAAFEVLALRRGAESRPGFDERPLRAARRNI
Ga0190267_1126995923300019767SoilMITFTTILAGFALFEVLAHRHGAETRPGFDERPERGPHRDI
Ga0190267_1130213823300019767SoilMSMLTFTSLIAALGLFEVLAYRSGAESRPGFDERPEHGHRRNV
Ga0190267_1162640413300019767SoilILAGFALFEVLAHRHGAETRPGFDERPERGPHRDI
Ga0196958_1001895423300020181SoilMLILASIIVGFATFEVLALTHGAESRPGFDERPERGPRRNI
Ga0196958_1008960023300020181SoilMLIFASILAGFAAFEVLALTHGAESRPGFDERPERGSRRNI
Ga0208736_100011453300027618Polar DesertMFENARMVLLTSLLSAVALFEVLALRYGAESRPIFDERPERGHRRNL
Ga0208736_101039243300027618Polar DesertMLTFTSILAGFALFEVLALRHGAESRPGFDERPLRAARRDI
Ga0208736_105875923300027618Polar DesertMLDMLLFTSSLAAFALFEVLAHRYGAESRPGFDERLEHGHRRNV
Ga0247708_100444723300028005SoilMITFTAILAGFTLFEVLAFRHGAETRPGFDERPERAPHRHTV
Ga0247708_100684623300028005SoilMPIMSTMIIFTTVIAGFALFEVLALRHGAESRPGFDERPERAPQRII
Ga0247708_100853123300028005SoilMLITASILAGLALFEVLAYSHGAETRPGFDERPERGPRRNI
Ga0247704_100717423300028040SoilMLTLASIIVGFATFEVLALTHGAESRRGFDERPERGPRRSI
Ga0247704_103146123300028040SoilMLLLLSAIAFALFELLAFRYGAESRPFFDERLERGPARAI
Ga0247704_106817513300028040SoilMITFASILVGFAAFEVLALTHGAESRPGFDERPERAPRRNI
Ga0307288_1040261013300028778SoilADHVGMLLFASAVTAFGLFEMLAYRYGADTRPGFDERPERGPRNTV
Ga0307502_1001250523300031164SoilMLTITSISILAGFALFEVLAYRAGADSRPGFDERPERGPHRNI
Ga0307502_1002068023300031164SoilMLTITSISILAGFALFEVLAYRVGADSRPGFDERPERGSHRNI
Ga0299913_1012234343300031229SoilMLIVTSILAGFALFEVLAYRHGAESRPGFDERLEHGPYHSI
Ga0310813_1056597123300031716SoilMLLATSLLAFGIFEALALRYGAESRPGFDERPERDRR
Ga0334944_074169_244_3693300034009Sub-Biocrust SoilMLIFTSLITAFGLFEVLAYRYGAESRPVFDERLEHGPRRNV
Ga0372943_0469240_380_5053300034268SoilMVLFASAVAAFGLFELLALRHGAESRPFFDERPERGRPRNI
Ga0334931_134432_406_5403300034377Sub-Biocrust SoilMSMITVSSILAGFALFEVLAYRYGAESRPGFDGRPEREPHRHNV
Ga0334931_141257_290_4153300034377Sub-Biocrust SoilMLILASAITAFGLFEVLAYRYGADSRPGFDERPERAPRNTV


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.