Metagenome / Metatranscriptome Family F100018

Basic Information
Family ID	F100018
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	41 residues
Representative Sequence	ADLAANGGKLPDGIPETARSQLAATLRRDADGLIAITTTD
Number of Associated Samples	88
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	98.06 %
% of genes from short scaffolds (< 2000 bps)	86.41 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Most Common Taxonomy
Group	Bacteria (59.223 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (15.534 % of family members)
Environment Ontology (ENVO)	Unclassified (33.981 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.573 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 41.18% β-sheet: 0.00% Coil/Unstructured: 58.82%
Feature Viewer

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Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF01695	IstB_IS21	10.68
PF13546	DDE_5	3.88
PF13565	HTH_32	1.94
PF02826	2-Hacid_dh_C	1.94
PF00239	Resolvase	1.94
PF02796	HTH_7	1.94
PF13358	DDE_3	1.94
PF00561	Abhydrolase_1	1.94
PF12728	HTH_17	0.97
PF03636	Glyco_hydro_65N	0.97
PF13515	FUSC_2	0.97
PF01740	STAS	0.97
PF07592	DDE_Tnp_ISAZ013	0.97
PF01337	Barstar	0.97
PF05048	NosD	0.97
PF01526	DDE_Tnp_Tn3	0.97
PF13424	TPR_12	0.97
PF00069	Pkinase	0.97
PF13487	HD_5	0.97
PF08388	GIIM	0.97
PF13466	STAS_2	0.97
PF01966	HD	0.97
PF03060	NMO	0.97
PF01243	Putative_PNPOx	0.97
PF07681	DoxX	0.97
PF00440	TetR_N	0.97
PF00400	WD40	0.97
PF01145	Band_7	0.97
PF01555	N6_N4_Mtase	0.97
PF00582	Usp	0.97
PF00106	adh_short	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG1484	DNA replication protein DnaC	Replication, recombination and repair [L]	10.68
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.88
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	1.94
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	1.94
COG0516	IMP dehydrogenase/GMP reductase	Nucleotide transport and metabolism [F]	0.97
COG0863	DNA modification methylase	Replication, recombination and repair [L]	0.97
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	0.97
COG1554	Phosphatase/phosphodiesterase/kojibiose phosphorylase YcjT/PafA/Npp1, AlkP superfamily	Carbohydrate transport and metabolism [G]	0.97
COG2070	NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase family	General function prediction only [R]	0.97
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	0.97
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	0.97
COG2732	Barstar, RNAse (barnase) inhibitor	Transcription [K]	0.97
COG4270	Uncharacterized membrane protein	Function unknown [S]	0.97
COG4644	Transposase and inactivated derivatives, TnpA family	Mobilome: prophages, transposons [X]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	59.22 %
Unclassified	root	N/A	40.78 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	59.22 %
Unclassified	root	N/A	40.78 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	59.22 %
Unclassified	root	N/A	40.78 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	53.40 %
Unclassified	root	N/A	40.78 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	46.60 %
Unclassified	root	N/A	40.78 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.97 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.78 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	38.83 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.97 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.78 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	5.83 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	4.85 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	2.91 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	1.94 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	1.94 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.97 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.97 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.97 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.97 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	0.97 %
Catenulisporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales	0.97 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.78 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	4.85 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	2.91 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1.94 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.94 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	1.94 %
Bogoriellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Bogoriellaceae	0.97 %
Actinopolymorphaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae	0.97 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.97 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.97 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	0.97 %
Streptosporangiales incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiales incertae sedis	0.97 %
Catenulisporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae	0.97 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.97 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.78 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	4.85 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	2.91 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	1.94 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.94 %
Haloechinothrix	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Haloechinothrix	0.97 %
Allonocardiopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiales incertae sedis → Allonocardiopsis	0.97 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	0.97 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.97 %
Micromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	0.97 %
Catenulispora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora	0.97 %
Actinopolymorpha	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha	0.97 %
Georgenia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Bogoriellaceae → Georgenia	0.97 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.97 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.97 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.78 %
Mycobacterium gastri	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium gastri	4.85 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1.94 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.94 %
Allonocardiopsis opalescens	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiales incertae sedis → Allonocardiopsis → Allonocardiopsis opalescens	0.97 %
Georgenia satyanarayanai	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Bogoriellaceae → Georgenia → Georgenia satyanarayanai	0.97 %
unclassified Catenulispora	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → unclassified Catenulispora	0.97 %
Haloechinothrix alba	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Haloechinothrix → Haloechinothrix alba	0.97 %
Actinopolymorpha pittospori	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha → Actinopolymorpha pittospori	0.97 %
unclassified Streptomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces	0.97 %
unclassified Micromonospora	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → unclassified Micromonospora	0.97 %
unclassified Amycolatopsis	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis	0.97 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.97 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.97 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.97 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.78 %
Mycobacterium gastri	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium gastri	4.85 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1.94 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.94 %
Catenulispora sp. 13_1_20CM_3_70_7	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → unclassified Catenulispora → Catenulispora sp. 13_1_20CM_3_70_7	0.97 %
Streptomyces sp. DvalAA-43	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. DvalAA-43	0.97 %
Amycolatopsis sp. GM8	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. GM8	0.97 %
Micromonospora sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → unclassified Micromonospora → Micromonospora sp.	0.97 %
Allonocardiopsis opalescens	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiales incertae sedis → Allonocardiopsis → Allonocardiopsis opalescens	0.97 %
Georgenia satyanarayanai	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Bogoriellaceae → Georgenia → Georgenia satyanarayanai	0.97 %
Haloechinothrix alba	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Haloechinothrix → Haloechinothrix alba	0.97 %
Actinopolymorpha pittospori	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha → Actinopolymorpha pittospori	0.97 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.97 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.97 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.97 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_122901329	All Organisms → cellular organisms → Bacteria	1156	Open in IMG/M
3300001356\|JGI12269J14319_10034502	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	3289	Open in IMG/M
3300001431\|F14TB_102635513	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora → unclassified Catenulispora → Catenulispora sp. 13_1_20CM_3_70_7	602	Open in IMG/M
3300005445\|Ga0070708_101324231	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	672	Open in IMG/M
3300005552\|Ga0066701_10645746	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	640	Open in IMG/M
3300005554\|Ga0066661_10690515	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	600	Open in IMG/M
3300006052\|Ga0075029_100897189	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	608	Open in IMG/M
3300006059\|Ga0075017_100995739	Not Available	653	Open in IMG/M
3300006162\|Ga0075030_100988754	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300006577\|Ga0074050_12017705	Not Available	553	Open in IMG/M
3300006603\|Ga0074064_11527091	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Bogoriellaceae → Georgenia → Georgenia satyanarayanai	543	Open in IMG/M
3300009012\|Ga0066710_102818397	Not Available	686	Open in IMG/M
3300009038\|Ga0099829_10654834	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	873	Open in IMG/M
3300009038\|Ga0099829_11060436	Not Available	672	Open in IMG/M
3300009089\|Ga0099828_10367701	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1296	Open in IMG/M
3300009520\|Ga0116214_1053887	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1459	Open in IMG/M
3300009521\|Ga0116222_1299069	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	695	Open in IMG/M
3300009522\|Ga0116218_1417146	Not Available	599	Open in IMG/M
3300009523\|Ga0116221_1313851	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	679	Open in IMG/M
3300009683\|Ga0116224_10504069	Not Available	577	Open in IMG/M
3300009698\|Ga0116216_10735828	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Haloechinothrix → Haloechinothrix alba	592	Open in IMG/M
3300010337\|Ga0134062_10790201	Not Available	507	Open in IMG/M
3300010379\|Ga0136449_100584372	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1909	Open in IMG/M
3300010876\|Ga0126361_11306516	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	899	Open in IMG/M
3300011107\|Ga0151490_1757389	Not Available	512	Open in IMG/M
3300012189\|Ga0137388_10817736	Not Available	863	Open in IMG/M
3300012202\|Ga0137363_10405978	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1135	Open in IMG/M
3300012206\|Ga0137380_10697922	Not Available	881	Open in IMG/M
3300012207\|Ga0137381_11526276	Not Available	559	Open in IMG/M
3300012210\|Ga0137378_10771971	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	873	Open in IMG/M
3300012210\|Ga0137378_10911511	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	792	Open in IMG/M
3300012350\|Ga0137372_10272906	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1321	Open in IMG/M
3300012351\|Ga0137386_11146072	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300012356\|Ga0137371_10804014	Not Available	716	Open in IMG/M
3300012361\|Ga0137360_11680758	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	540	Open in IMG/M
3300012532\|Ga0137373_10627510	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	808	Open in IMG/M
3300016270\|Ga0182036_11821897	Not Available	515	Open in IMG/M
3300016270\|Ga0182036_11921927	Not Available	502	Open in IMG/M
3300016319\|Ga0182033_10018108	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4211	Open in IMG/M
3300016341\|Ga0182035_11017362	Not Available	735	Open in IMG/M
3300016371\|Ga0182034_11125022	All Organisms → cellular organisms → Bacteria → Terrabacteria group	681	Open in IMG/M
3300016422\|Ga0182039_10876631	Not Available	800	Open in IMG/M
3300017928\|Ga0187806_1007641	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	2992	Open in IMG/M
3300017928\|Ga0187806_1204835	All Organisms → cellular organisms → Bacteria → Terrabacteria group	670	Open in IMG/M
3300017955\|Ga0187817_10022569	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3753	Open in IMG/M
3300017955\|Ga0187817_10523009	Not Available	757	Open in IMG/M
3300017961\|Ga0187778_11256172	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	520	Open in IMG/M
3300017974\|Ga0187777_10898718	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	637	Open in IMG/M
3300017975\|Ga0187782_11077235	Not Available	627	Open in IMG/M
3300018012\|Ga0187810_10467543	Not Available	536	Open in IMG/M
3300018038\|Ga0187855_10810114	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha → Actinopolymorpha pittospori	546	Open in IMG/M
3300018058\|Ga0187766_10026581	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3338	Open in IMG/M
3300018058\|Ga0187766_11086130	All Organisms → cellular organisms → Bacteria → Terrabacteria group	574	Open in IMG/M
3300018060\|Ga0187765_10428123	Not Available	823	Open in IMG/M
3300018086\|Ga0187769_11066668	Not Available	611	Open in IMG/M
3300018482\|Ga0066669_11129065	Not Available	707	Open in IMG/M
3300020581\|Ga0210399_10360403	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1214	Open in IMG/M
3300021432\|Ga0210384_10043432	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4116	Open in IMG/M
3300021432\|Ga0210384_10650847	All Organisms → cellular organisms → Bacteria → Terrabacteria group	945	Open in IMG/M
3300025898\|Ga0207692_11191479	Not Available	506	Open in IMG/M
3300025910\|Ga0207684_11399350	Not Available	573	Open in IMG/M
3300026021\|Ga0208140_1021399	All Organisms → cellular organisms → Bacteria → Terrabacteria group	901	Open in IMG/M
3300026934\|Ga0207816_1045157	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium gastri	512	Open in IMG/M
3300026947\|Ga0207853_1041969	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium gastri	598	Open in IMG/M
3300027882\|Ga0209590_10408797	Not Available	877	Open in IMG/M
3300027894\|Ga0209068_10834579	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium gastri	544	Open in IMG/M
3300027905\|Ga0209415_11068657	Not Available	529	Open in IMG/M
3300030494\|Ga0310037_10069818	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → unclassified Micromonospora → Micromonospora sp.	1654	Open in IMG/M
3300030617\|Ga0311356_11572799	Not Available	592	Open in IMG/M
3300031549\|Ga0318571_10418775	Not Available	526	Open in IMG/M
3300031564\|Ga0318573_10190284	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. GM8	1086	Open in IMG/M
3300031640\|Ga0318555_10514757	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium gastri	648	Open in IMG/M
3300031671\|Ga0307372_10208287	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1244	Open in IMG/M
3300031708\|Ga0310686_116471585	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	704	Open in IMG/M
3300031713\|Ga0318496_10566149	Not Available	628	Open in IMG/M
3300031778\|Ga0318498_10530154	Not Available	517	Open in IMG/M
3300031792\|Ga0318529_10293803	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium gastri	756	Open in IMG/M
3300031796\|Ga0318576_10365090	Not Available	682	Open in IMG/M
3300031797\|Ga0318550_10182159	Not Available	1014	Open in IMG/M
3300031912\|Ga0306921_11892230	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	639	Open in IMG/M
3300031945\|Ga0310913_11122630	Not Available	549	Open in IMG/M
3300032001\|Ga0306922_10061278	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3915	Open in IMG/M
3300032160\|Ga0311301_10008691	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	33346	Open in IMG/M
3300032160\|Ga0311301_10809860	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. DvalAA-43	1284	Open in IMG/M
3300032160\|Ga0311301_11326848	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	906	Open in IMG/M
3300032160\|Ga0311301_11897436	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiales incertae sedis → Allonocardiopsis → Allonocardiopsis opalescens	702	Open in IMG/M
3300032261\|Ga0306920_100609567	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1615	Open in IMG/M
3300032783\|Ga0335079_10958203	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	875	Open in IMG/M
3300032805\|Ga0335078_10773725	Not Available	1176	Open in IMG/M
3300032805\|Ga0335078_11004813	Not Available	987	Open in IMG/M
3300032828\|Ga0335080_10116503	All Organisms → cellular organisms → Bacteria	2965	Open in IMG/M
3300032828\|Ga0335080_10739834	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1021	Open in IMG/M
3300032828\|Ga0335080_11419438	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	689	Open in IMG/M
3300032828\|Ga0335080_11912534	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	576	Open in IMG/M
3300032829\|Ga0335070_11215167	Not Available	691	Open in IMG/M
3300032892\|Ga0335081_10098841	Not Available	4347	Open in IMG/M
3300032892\|Ga0335081_10163649	All Organisms → cellular organisms → Bacteria	3153	Open in IMG/M
3300032895\|Ga0335074_11452133	Not Available	550	Open in IMG/M
3300032897\|Ga0335071_11179503	Not Available	711	Open in IMG/M
3300032955\|Ga0335076_10122402	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2524	Open in IMG/M
3300033158\|Ga0335077_11814583	Not Available	572	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	90.29%
Aquatic	Environmental → Aquatic	9.71%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.32%
Freshwater	Environmental → Aquatic → Freshwater	5.83%
Sediment	Environmental → Aquatic → Sediment	3.88%
Peat	Environmental → Terrestrial → Peat	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	61.17%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	21.36%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	5.83%
Loam	Environmental → Terrestrial → Soil → Loam	5.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.88%
Clay	Environmental → Terrestrial → Soil → Clay	0.97%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	34.95%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	21.36%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	20.39%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.83%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	4.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.91%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.94%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.97%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.97%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.97%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	15.53%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	13.59%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	13.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.74%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	6.80%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	4.85%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.94%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.97%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.97%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.97%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.97%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006577	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006603	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011107	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAC (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026021	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_0N_404 (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026934	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 10 (SPAdes)	Environmental	Open in IMG/M
3300026947	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 6 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031671	Soil microbial communities from Risofladan, Vaasa, Finland - OX-1	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100018

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1229013293	3300000956	Soil	SGGKLPDGIPEAARGQLAATLRRDADGLTAITITGQPGR*
JGI12269J14319_100345024	3300001356	Peatlands Soil	DLAASGGNLPDGVPEAARGELAAALRRDADGLITVTATA*
F14TB_1026355131	3300001431	Soil	AADLAANGGNLPDGIPETARSQLAATLRRDADGLSAITTTD*
Ga0070708_1013242311	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	ISNAADLAASGGNLPDGVPEAARGELAAALRRDADGLITITTTA*
Ga0066701_106457461	3300005552	Soil	NGGKLPDGIPEPARNQLAATLRRDADGLIAITATE*
Ga0066661_106905152	3300005554	Soil	ARYISGAADLAASGGKLPDGIPETARNQLAATLRRDADGLIAITTTG*
Ga0075029_1008971891	3300006052	Watersheds	RYISGAADLAADGGKLPDGVPETARNQLVATLRRDADGLIAITATG*
Ga0075017_1009957394	3300006059	Watersheds	SGAADLAANGGKLPDGIPETARNQLAATLRRDADGLIAITTTE*
Ga0075030_1009887542	3300006162	Watersheds	GAADLAANGGKLPDGIPETARSQLAATLRRDADGLIAITATD*
Ga0074050_120177051	3300006577	Soil	DLAANGGKLPDGIPETARSQLAGTLRRDADGLIAITTTD*
Ga0074064_115270911	3300006603	Soil	ISGAADLAANGGKLPDGIPETARSQLAATLRRDADGLIAITTTD*
Ga0066710_1028183971	3300009012	Grasslands Soil	GAADLAANGGKLPDGIPETARSKLAATLRRDADGLTALTAAG
Ga0099829_106548341	3300009038	Vadose Zone Soil	NGGKLPDGIPETARSQLAATLRRDADGLIAITTTD*
Ga0099829_110604362	3300009038	Vadose Zone Soil	SGAAGLAASGGKLPDGIPETARSQLAATLRRDADGLMAITTTD*
Ga0099828_103677011	3300009089	Vadose Zone Soil	AASGGNLPDGVPEAARGELAAALRRDADGLITVTTTA*
Ga0116214_10538871	3300009520	Peatlands Soil	NGGKLPDGIPETARNQLAATLRRDADGLIAITTRDS*
Ga0116222_12990691	3300009521	Peatlands Soil	DLAANGGKLPDGIPETARSQLAATLRRDADGLIAITATG*
Ga0116218_14171461	3300009522	Peatlands Soil	DLAANGGKLPDGIPETARSQLAATLRRDADGLIAITATE*
Ga0116221_13138512	3300009523	Peatlands Soil	GKLPDGIPETARHQLAATLRRDADGLIAITTRDS*
Ga0116224_105040692	3300009683	Peatlands Soil	YISGAADLAANGGKLPDGIPETARSQLAATLRRDADGLIAITATD*
Ga0116216_107358281	3300009698	Peatlands Soil	DLAASGGNLPDGVPEAARGELAAALRRDADGLITVTTTA*
Ga0134062_107902011	3300010337	Grasslands Soil	SGGKLPDGIPEAARGQLAATLRRDADGLTAITITGQPGH*
Ga0136449_1005843723	3300010379	Peatlands Soil	AASGGNLPDGVPEAARGELAAALRRDADGLITVTATA*
Ga0126361_113065161	3300010876	Boreal Forest Soil	AAAADLAAGGGRLPDGIPETARSQLAATLRRDADGLTAITTAC*
Ga0151490_17573891	3300011107	Soil	LAANGGKLPDGIPETARNQLAATLRRDADGLIAITAAG*
Ga0137388_108177362	3300012189	Vadose Zone Soil	AASGGNLPDGIPEAARDELAAALRRDADRLITISTDT*
Ga0137363_104059781	3300012202	Vadose Zone Soil	AANGGKLPDGIPETARSQLAASLRRDADGLIAIATTD*
Ga0137380_106979221	3300012206	Vadose Zone Soil	LAASGGNLPDGVPEAARGELAAALRRDADGLITITTTA*
Ga0137381_115262762	3300012207	Vadose Zone Soil	AAGLAASGGNLPDGVPEAARGELAAALRRDADGLITITTTA*
Ga0137378_107719712	3300012210	Vadose Zone Soil	HIGNAAGLAASGGNLPDGVPEAARGELAAALRRDADGLITVTTTA*
Ga0137378_109115112	3300012210	Vadose Zone Soil	NGGKLPDGIPETARNQLAATLRRDADGLIAITTTD*
Ga0137372_102729062	3300012350	Vadose Zone Soil	ANGGKLPDGIPETARNQLAATLRRDADGLIAITTTD*
Ga0137386_111460721	3300012351	Vadose Zone Soil	ISGAADLAASGGKLPDGIPETARSQLAATLRRDADGLIAIAITTTD*
Ga0137371_108040141	3300012356	Vadose Zone Soil	AADLAANGGNLPDGIPETARNQLAATLRRDADGLIAITTTD*
Ga0137360_116807581	3300012361	Vadose Zone Soil	ISNAAGLAASGGNLPDGVPEAARGELAAALRRDAGGLITVTATA*
Ga0137373_106275101	3300012532	Vadose Zone Soil	RYISGAADLAASGGRLPNGIPETARSQLAATLRRDADGLIAITTTD*
Ga0137416_106588883	3300012927	Vadose Zone Soil	AARYISNAADLAASGGNLPDGVPEAARDELAAALRRDADSLITISADA*
Ga0182036_118218971	3300016270	Soil	ADLAANGGKLPDGVPEAARGELAATLRRDADGLIAVITTA
Ga0182036_119219272	3300016270	Soil	ADLAANGGKLPDGIPETARSQLAATLRRDADGLIAITNMAID
Ga0182033_100181084	3300016319	Soil	AANGGKLPDGIPETARSQLAATLRRDADGLIAVTAAG
Ga0182035_110173621	3300016341	Soil	AADLAANGGKLPDGIPETARNQLAATLRRDADGLIAITTTG
Ga0182034_111250222	3300016371	Soil	LAANGGKLPDGIPETARNQLGASLRRDADGLIAITTTE
Ga0182039_108766312	3300016422	Soil	AADLAANGGHLPDGIPEAARTQLAASLRRDADGLIAITTTD
Ga0187806_10076417	3300017928	Freshwater Sediment	ARYISGAADLAANGGRLPDGIPETARSQLAASLRRDADGLIAIITG
Ga0187806_12048352	3300017928	Freshwater Sediment	DLAANGGELPDGIPETARDQLAATLRRDADGLIAIADAG
Ga0187817_100225696	3300017955	Freshwater Sediment	YISGAADLAANGGKLPDGIPETARNQLAATLRRDADGLIAIAITTTD
Ga0187817_105230091	3300017955	Freshwater Sediment	AADLAASGGKLPGRDSRDGTRPAAATLRRDADGLIAITTTG
Ga0187778_112561721	3300017961	Tropical Peatland	SGAADLAANGGNLPDGIPETARSQLAATLRRDADGLIAITATG
Ga0187777_108987181	3300017974	Tropical Peatland	LAANGGKLPDGIPETARSQLAATLRRDADGLIAITTRDS
Ga0187782_110772351	3300017975	Tropical Peatland	SAADLAANGGQLPDGVPETARSQLAATLRRDADGLIAITTTG
Ga0187810_104675431	3300018012	Freshwater Sediment	AADLAANGGKLPDGIPETARSQLAATLRRDADGLTAITATD
Ga0187855_108101142	3300018038	Peatland	DLAADGGKLPDGIPETARNQLAATLRRDADRLIAITATD
Ga0187766_100265815	3300018058	Tropical Peatland	NGGKLPDGIPETARSQLAATLRRDADGVVAITATG
Ga0187766_110861302	3300018058	Tropical Peatland	AADLAANGGKLPDGIPGTARSQLAATLRRDADGLIAITATG
Ga0187765_104281232	3300018060	Tropical Peatland	AANGGKLPDGVPETARSQLAATLRRDAERLTALTAAG
Ga0187769_110666682	3300018086	Tropical Peatland	GAADLAANGGKLPDGIPETARNQLAATLRRDADGLIAITTTG
Ga0066669_111290652	3300018482	Grasslands Soil	GKLPDGIPEAARGQLAATLRRDADGLTAITITGQPGH
Ga0210399_103604034	3300020581	Soil	SGGKLPDGIPEAARGQLAATLRRNADGLTAITVTG
Ga0210384_100434321	3300021432	Soil	GGKLPDGIPEAARGQLAATLRRDADGLTAITITGQPGH
Ga0210384_106508473	3300021432	Soil	LAASGGKLPDGIPEAARGQLAATLRRDADGLTAITITG
Ga0207692_111914791	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	AADLAANGGKLPAGIPETARSQLAATLRRDADGLTAITATG
Ga0207684_113993502	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	NGGKLPDGIPETARSQLAATLRRDADGLVAITTTD
Ga0208140_10213991	3300026021	Rice Paddy Soil	YISNAADLAANGGKLPDGVPEAARGELAATLRRDADGLIAVTTTA
Ga0209131_10359062	3300026320	Grasslands Soil	MTDTAKSAAADLAASGGNLPDGVPEAARDELAAALRRHADRLITISADV
Ga0207816_10451571	3300026934	Tropical Forest Soil	ADLAANGGKLPDGIPETARSQLAATLRRDADGLIAITGTG
Ga0207853_10419691	3300026947	Tropical Forest Soil	ARYISGAADLAANGGKLPDGIPETARSQLAATLRRDADGLIAITGTG
Ga0209590_104087971	3300027882	Vadose Zone Soil	DLAANGGKLPDGIPETARNQLAATLRRDADGLIAITTTD
Ga0209068_108345791	3300027894	Watersheds	DPVSADLAANGGKLPDGIPETARNQLAATLRRDADGLIAITTTG
Ga0209415_110686571	3300027905	Peatlands Soil	GAADLAANGGKLPDGIPETARNQLAATLRRDADGLIAITTRDS
Ga0310037_100698183	3300030494	Peatlands Soil	DLAASGGNLPDGVPEAARGELAAALRRDADGLITVTTTA
Ga0311356_115727991	3300030617	Palsa	YISGTADLAANGGKLPDGIPETARHQLVATLRRDADGLTAITAAD
Ga0318571_104187752	3300031549	Soil	GGKLPAGIPETARNQLAATLRRDADGLIAIAIAATD
Ga0318573_101902841	3300031564	Soil	ANGGHLPAGIPEAARTQLAATLRRDADGLIAITATG
Ga0318555_105147571	3300031640	Soil	LAANGGKLPDGIPETARSQLAATLRRDADGLTAITDAG
Ga0307372_102082874	3300031671	Soil	SAADLAASGGNLPDGVPEAARGELAAALRRDADGLITVTTTA
Ga0310686_1164715851	3300031708	Soil	LAASGGNLPDGVPEAARDELAAALRRDADRLIAVTTTA
Ga0318496_105661491	3300031713	Soil	ARYISGAADLTANGGQFPDGIPETARSQLAATLRRDADGLIAITTAD
Ga0318498_105301541	3300031778	Soil	YIGGAADLAANGKLPDGIPETARSQLAATLRRDADGLIAITTTG
Ga0318529_102938032	3300031792	Soil	ANGGKLPDGIPETARSQLAATLRRDADGLIAVTAAG
Ga0318576_103650902	3300031796	Soil	RYISGAADLAANGGKLPDGIPETARHQLAATLRRDADGLTALTAAG
Ga0318550_101821591	3300031797	Soil	RYIGGAADLAANGGHLPDGIPEAARTQLAASLRRDADGLIAITTTD
Ga0306921_118922302	3300031912	Soil	YISGAADLVANGGKLPDGIPETARNQLAATLRRDANGLIAIAIAATD
Ga0310913_111226301	3300031945	Soil	ISDAADLAANGGNLPDGIPETARNQLAATLRRDADGLIAITTTG
Ga0306922_100612785	3300032001	Soil	ANGGHLPDGIPEAARTQLAASLRRDADGLIAITTTD
Ga0311301_1000869137	3300032160	Peatlands Soil	YIGNAADLAASGGNLPDGVPEAARGELAAALRRDADGLITVTTTA
Ga0311301_108098602	3300032160	Peatlands Soil	RYISNAADLAGSGGNLPDGVPEAARGELAAALRRDADRLITVTTTA
Ga0311301_113268482	3300032160	Peatlands Soil	AGGKLPDGIPETARSQLAATLRRDADGLIAITTTD
Ga0311301_118974362	3300032160	Peatlands Soil	YISGAADLAANGGKLPDGIPETARNQLAATLRRDADGLIAITTTG
Ga0306920_1006095674	3300032261	Soil	ANGGKLPDGIPETARSQLAATLRRDADGLIAITTG
Ga0335079_109582031	3300032783	Soil	GAADLAANGGKLPDGISETARSQLAATLRRDADGLIAITTRDS
Ga0335078_107737252	3300032805	Soil	WYRGGAADLAMNGGQLPEGIPETARSQLAATLRRDADGLIAITAAD
Ga0335078_110048131	3300032805	Soil	DLAASGGKLPDGIPEAARGQLAATLRRDADGLTAITITGQPGH
Ga0335080_101165036	3300032828	Soil	IGGAADLAANGGNLPDGVPETARSQLAATLRRDADGLIAITTTG
Ga0335080_107398341	3300032828	Soil	ADLAANGGKLPDGIPETARSQLAATLRRDADGLIAITTTD
Ga0335080_114194382	3300032828	Soil	YISGAADLAANGGKLPDGIPETARSQLAATLRRDADGLIAITARDS
Ga0335080_119125342	3300032828	Soil	GAADLAANDGKLPDGIPETARNQLAATLRRDADGLIAITTTE
Ga0335070_112151671	3300032829	Soil	ASGGKLPDGIPEAARGQLAATLRRDADGLTAITITGQPGH
Ga0335081_100988411	3300032892	Soil	AADLAANGGNLPDGVPETARSQLAATLRRDADGLIAITTTG
Ga0335081_101636495	3300032892	Soil	ANGGKLPDGIPETARSQLAATLRRDADGLIAITATD
Ga0335074_114521332	3300032895	Soil	RAANGGRLPDGIPETARSQLAASLRRDADGLIAIITG
Ga0335071_111795031	3300032897	Soil	KLPDGIPEAARGQLAATLRRDADGLTAITITGQPGH
Ga0335076_101224021	3300032955	Soil	DGKLPAGIPETARSQLAATLRRDADGLTAITITGQPGH
Ga0335077_118145831	3300033158	Soil	AADLAANGGKLPDGIPETARSQLAATLRRDADGLIAITTTD

Hidden Markov Model


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