Metagenome / Metatranscriptome Family F099963

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F099963
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	90 residues
Representative Sequence	MSRPHISALVCGVGLLVAFALAPAVFPNPFFRVAMGDLTPLLAIAAAVIVSTRNAFDSRGHTRLFWSLMATGMAMWCFNQACWVWF
Number of Associated Samples	90
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	13.86 %
% of genes near scaffold ends (potentially truncated)	98.06 %
% of genes from short scaffolds (< 2000 bps)	92.23 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (90.291 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland (21.359 % of family members)
Environment Ontology (ENVO)	Unclassified (58.252 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (41.748 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 66.67% β-sheet: 0.00% Coil/Unstructured: 33.33%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF00490	ALAD	54.37
PF13180	PDZ_2	1.94
PF05598	DUF772	1.94
PF01715	IPPT	0.97
PF00486	Trans_reg_C	0.97
PF11946	DUF3463	0.97
PF13620	CarboxypepD_reg	0.97
PF13229	Beta_helix	0.97
PF07638	Sigma70_ECF	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG0113	Delta-aminolevulinic acid dehydratase, porphobilinogen synthase	Coenzyme transport and metabolism [H]	54.37
COG0324	tRNA A37 N6-isopentenylltransferase MiaA	Translation, ribosomal structure and biogenesis [J]	0.97
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	90.29 %
Unclassified	root	N/A	9.71 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	90.29 %
Unclassified	root	N/A	9.71 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	90.29 %
Unclassified	root	N/A	9.71 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	79.61 %
Unclassified	root	N/A	9.71 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.97 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	72.82 %
Unclassified	root	N/A	9.71 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	5.83 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	72.82 %
Unclassified	root	N/A	9.71 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	4.85 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.97 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	72.82 %
Unclassified	root	N/A	9.71 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4.85 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.97 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	72.82 %
Unclassified	root	N/A	9.71 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	3.88 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.97 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	72.82 %
Unclassified	root	N/A	9.71 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1.94 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.97 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	72.82 %
Unclassified	root	N/A	9.71 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1.94 %
Streptomyces leeuwenhoekii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces leeuwenhoekii	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10146822	All Organisms → cellular organisms → Bacteria	895	Open in IMG/M
3300001356\|JGI12269J14319_10070478	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1928	Open in IMG/M
3300001593\|JGI12635J15846_10056595	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2959	Open in IMG/M
3300004082\|Ga0062384_100995079	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	599	Open in IMG/M
3300004152\|Ga0062386_100623239	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	882	Open in IMG/M
3300005445\|Ga0070708_100731563	Not Available	931	Open in IMG/M
3300005518\|Ga0070699_100795856	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	865	Open in IMG/M
3300006052\|Ga0075029_100839606	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300006055\|Ga0097691_1154858	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	610	Open in IMG/M
3300006059\|Ga0075017_100627874	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	823	Open in IMG/M
3300006059\|Ga0075017_100633730	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	819	Open in IMG/M
3300006102\|Ga0075015_100089648	All Organisms → cellular organisms → Bacteria	1528	Open in IMG/M
3300009029\|Ga0066793_10888860	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	504	Open in IMG/M
3300009520\|Ga0116214_1179371	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	793	Open in IMG/M
3300009521\|Ga0116222_1140633	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1039	Open in IMG/M
3300009522\|Ga0116218_1165969	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1001	Open in IMG/M
3300009624\|Ga0116105_1021166	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1367	Open in IMG/M
3300009624\|Ga0116105_1254217	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	501	Open in IMG/M
3300009632\|Ga0116102_1109249	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	788	Open in IMG/M
3300009634\|Ga0116124_1105865	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	794	Open in IMG/M
3300009643\|Ga0116110_1079549	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1134	Open in IMG/M
3300009646\|Ga0116132_1062850	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1172	Open in IMG/M
3300009683\|Ga0116224_10244066	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	857	Open in IMG/M
3300009839\|Ga0116223_10368427	Not Available	849	Open in IMG/M
3300009839\|Ga0116223_10487093	All Organisms → cellular organisms → Bacteria → Acidobacteria	719	Open in IMG/M
3300010343\|Ga0074044_10224379	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1244	Open in IMG/M
3300010343\|Ga0074044_11060601	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	531	Open in IMG/M
3300010379\|Ga0136449_100952105	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1390	Open in IMG/M
3300011269\|Ga0137392_10962142	All Organisms → cellular organisms → Bacteria	702	Open in IMG/M
3300011269\|Ga0137392_11634208	Not Available	502	Open in IMG/M
3300012361\|Ga0137360_11295767	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	629	Open in IMG/M
3300012363\|Ga0137390_10367988	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1418	Open in IMG/M
3300012363\|Ga0137390_10766248	All Organisms → cellular organisms → Bacteria	924	Open in IMG/M
3300012924\|Ga0137413_10288802	Not Available	1141	Open in IMG/M
3300012929\|Ga0137404_11195628	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	699	Open in IMG/M
3300014153\|Ga0181527_1211389	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	803	Open in IMG/M
3300014161\|Ga0181529_10462913	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	676	Open in IMG/M
3300014162\|Ga0181538_10259242	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	956	Open in IMG/M
3300014167\|Ga0181528_10101385	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1565	Open in IMG/M
3300014491\|Ga0182014_10539673	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	568	Open in IMG/M
3300014502\|Ga0182021_12893659	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	576	Open in IMG/M
3300014638\|Ga0181536_10145499	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1254	Open in IMG/M
3300014654\|Ga0181525_10562066	All Organisms → cellular organisms → Bacteria	634	Open in IMG/M
3300016750\|Ga0181505_10834756	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1195	Open in IMG/M
3300017823\|Ga0187818_10311025	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	693	Open in IMG/M
3300017941\|Ga0187850_10497799	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	527	Open in IMG/M
3300017946\|Ga0187879_10624047	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	599	Open in IMG/M
3300017946\|Ga0187879_10789291	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	530	Open in IMG/M
3300018003\|Ga0187876_1238645	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	596	Open in IMG/M
3300018004\|Ga0187865_1275921	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	558	Open in IMG/M
3300018008\|Ga0187888_1118696	Not Available	1110	Open in IMG/M
3300018009\|Ga0187884_10258313	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	708	Open in IMG/M
3300018012\|Ga0187810_10401695	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	576	Open in IMG/M
3300018016\|Ga0187880_1015248	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	4801	Open in IMG/M
3300018019\|Ga0187874_10422337	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	537	Open in IMG/M
3300018021\|Ga0187882_1361486	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	552	Open in IMG/M
3300018024\|Ga0187881_10442170	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	531	Open in IMG/M
3300018025\|Ga0187885_10366197	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	648	Open in IMG/M
3300018033\|Ga0187867_10766639	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	524	Open in IMG/M
3300018042\|Ga0187871_10032911	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3229	Open in IMG/M
3300018042\|Ga0187871_10577849	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	623	Open in IMG/M
3300018042\|Ga0187871_10696752	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	565	Open in IMG/M
3300018043\|Ga0187887_10070845	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2116	Open in IMG/M
3300018043\|Ga0187887_10215431	All Organisms → cellular organisms → Bacteria	1141	Open in IMG/M
3300018047\|Ga0187859_10464712	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	701	Open in IMG/M
3300018057\|Ga0187858_10192006	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1337	Open in IMG/M
3300018057\|Ga0187858_10195073	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1325	Open in IMG/M
3300018088\|Ga0187771_10920933	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	741	Open in IMG/M
3300019887\|Ga0193729_1016729	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3220	Open in IMG/M
3300022875\|Ga0224553_1064426	All Organisms → cellular organisms → Bacteria	773	Open in IMG/M
3300023090\|Ga0224558_1166983	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	691	Open in IMG/M
3300024233\|Ga0224521_1054765	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	885	Open in IMG/M
3300025414\|Ga0208935_1009441	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1343	Open in IMG/M
3300025434\|Ga0208690_1069061	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	549	Open in IMG/M
3300025527\|Ga0208714_1066323	Not Available	754	Open in IMG/M
3300025888\|Ga0209540_10397303	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	753	Open in IMG/M
3300026920\|Ga0208575_1021794	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	576	Open in IMG/M
3300027158\|Ga0208725_1031784	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	829	Open in IMG/M
3300027334\|Ga0209529_1021461	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1095	Open in IMG/M
3300027497\|Ga0208199_1044932	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	949	Open in IMG/M
3300027562\|Ga0209735_1028628	Not Available	1162	Open in IMG/M
3300027591\|Ga0209733_1102965	All Organisms → cellular organisms → Bacteria	719	Open in IMG/M
3300027604\|Ga0208324_1123725	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	714	Open in IMG/M
3300027604\|Ga0208324_1147509	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	641	Open in IMG/M
3300027641\|Ga0208827_1115982	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	777	Open in IMG/M
3300027645\|Ga0209117_1136203	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	649	Open in IMG/M
3300027696\|Ga0208696_1116003	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	881	Open in IMG/M
3300027853\|Ga0209274_10548934	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	598	Open in IMG/M
3300027862\|Ga0209701_10002978	All Organisms → cellular organisms → Bacteria	11050	Open in IMG/M
3300027862\|Ga0209701_10653045	Not Available	549	Open in IMG/M
3300028047\|Ga0209526_10189397	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1429	Open in IMG/M
3300028745\|Ga0302267_10209163	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	863	Open in IMG/M
3300028866\|Ga0302278_10232165	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	894	Open in IMG/M
3300028882\|Ga0302154_10284941	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	815	Open in IMG/M
3300029817\|Ga0247275_1140082	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces leeuwenhoekii	615	Open in IMG/M
3300029910\|Ga0311369_10856884	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	730	Open in IMG/M
3300030004\|Ga0302186_10306561	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	529	Open in IMG/M
3300031247\|Ga0265340_10290863	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	725	Open in IMG/M
3300031708\|Ga0310686_100462713	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	566	Open in IMG/M
3300033888\|Ga0334792_060878	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1139	Open in IMG/M
3300033891\|Ga0334811_165599	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	543	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.03%
Host-Associated	Host-Associated	0.97%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	55.34%
Aquatic	Environmental → Aquatic	43.69%
Plants	Host-Associated → Plants	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	45.63%
Freshwater	Environmental → Aquatic → Freshwater	39.81%
Peat	Environmental → Terrestrial → Peat	9.71%
Sediment	Environmental → Aquatic → Sediment	3.88%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.97%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	39.81%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	29.13%
Loam	Environmental → Terrestrial → Soil → Loam	10.68%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	9.71%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.88%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.97%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	29.13%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.21%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	9.71%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.74%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	7.77%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.88%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.91%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	2.91%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.91%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	21.36%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	13.59%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.71%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	7.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.80%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	5.83%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	4.85%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.88%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	3.88%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.91%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	2.91%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.94%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.97%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.97%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.97%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.97%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.97%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.97%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006055	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009624	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10	Environmental	Open in IMG/M
3300009632	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40	Environmental	Open in IMG/M
3300009634	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_150	Environmental	Open in IMG/M
3300009643	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40	Environmental	Open in IMG/M
3300009646	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_150	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014153	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_60_metaG	Environmental	Open in IMG/M
3300014161	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_30_metaG	Environmental	Open in IMG/M
3300014162	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG	Environmental	Open in IMG/M
3300014167	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaG	Environmental	Open in IMG/M
3300014491	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG	Environmental	Open in IMG/M
3300014502	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014638	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300016750	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017941	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_150	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300018003	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_40	Environmental	Open in IMG/M
3300018004	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_100	Environmental	Open in IMG/M
3300018008	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_40	Environmental	Open in IMG/M
3300018009	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300018016	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_40	Environmental	Open in IMG/M
3300018019	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150	Environmental	Open in IMG/M
3300018021	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_150	Environmental	Open in IMG/M
3300018024	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_100	Environmental	Open in IMG/M
3300018025	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_100	Environmental	Open in IMG/M
3300018033	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300022875	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 10-14	Environmental	Open in IMG/M
3300023090	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24	Environmental	Open in IMG/M
3300024233	Peat soil microbial communities from Stordalen Mire, Sweden - C.F.S.T0	Environmental	Open in IMG/M
3300025414	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10 (SPAdes)	Environmental	Open in IMG/M
3300025434	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10 (SPAdes)	Environmental	Open in IMG/M
3300025527	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025888	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 011-21A (SPAdes)	Environmental	Open in IMG/M
3300026920	Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN397 (SPAdes)	Environmental	Open in IMG/M
3300027158	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF011 (SPAdes)	Environmental	Open in IMG/M
3300027334	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O2 (SPAdes)	Environmental	Open in IMG/M
3300027497	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG (SPAdes)	Environmental	Open in IMG/M
3300027562	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027591	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)	Environmental	Open in IMG/M
3300027604	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG (SPAdes)	Environmental	Open in IMG/M
3300027641	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG (SPAdes)	Environmental	Open in IMG/M
3300027645	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)	Environmental	Open in IMG/M
3300027696	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028745	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E1_3	Environmental	Open in IMG/M
3300028866	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_2	Environmental	Open in IMG/M
3300028882	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_3	Environmental	Open in IMG/M
3300029817	Soil microbial communities from Marcell Experimental Forest, Minnesota, USA - Bog25	Environmental	Open in IMG/M
3300029910	III_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030004	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E1_1	Environmental	Open in IMG/M
3300031247	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG	Host-Associated	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300033888	Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-3-X1	Environmental	Open in IMG/M
3300033891	Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-1-D	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_101468221	3300000567	Peatlands Soil	MIEKVSFRPIPSLLWGVGLLLVFALAPAVFPSPFFRLALGDLVPLLVIAVACIPCARNAFDSRGHTRLFWSLMTAGMVMWTFNQAMW
JGI12269J14319_100704782	3300001356	Peatlands Soil	VAQRNISALLWGTGLLLAFALAAVVFPDPFFRVAMGXVTPLLAIAAAFILCNRNAFDSRGRTRLFWSLMAAGMAMWCFNAACWTWFE
JGI12635J15846_100565951	3300001593	Forest Soil	VVSRPHIPSLLCGAGLLLAFVLAPVVFPNPFFRLAMGDAVPLLVIAAAFIVSARNAFDSRGHTRLFWSLMTAGMAMWCFNQACWMWFEVVIR
Ga0062384_1009950792	3300004082	Bog Forest Soil	VLLVGFALAPLVFPNATFRVAIGDIVPLLVIGAASVVTIRNAIDSRGHARLFWGLMAAGMTMWTFNQACWAWLEVIARRPLPDPFPGDIVL
Ga0062386_1006232392	3300004152	Bog Forest Soil	VGYRSHISALVFGIGLLLAFALAPVVFPDPFFRVAMGDLVPLLVILAAFAVSARNAFDSRGHTRLFWALITAGMAMWCFNQGCWAWFEVVLRK
Ga0070708_1007315632	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VVSRLHISSLLSGVGLLLVFFLVPAAFPSPFLRVAIGDLIPLLVVTAAFILSARNASDSRGHTRLFWSLIAAGMAMWCFNQACWVWF
Ga0070699_1007958562	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	VVSRLHISSLLSGVGLLLVFFLVPAAFPSPFLRVAIGDLIPLLVVTAAFILSARNASDSRGHTRLFWSLIAAGMAMWCFNQACWVWFEVVVRRPLPEPNLG
Ga0075029_1008396061	3300006052	Watersheds	VVSRLHISSLLCGVGLLLAFALAPTVFPSPFFRVAMGDLAPLLLITATVVLSAKSAFDSRGHTRLFWSLMTAGMAMWCF
Ga0097691_11548582	3300006055	Arctic Peat Soil	MMQRVSGRHISSLLFGVGLLLTFAVAPAVFPNPFFRVVMGDMTPLLLIATAAILAARNAIDSRGHTRLFWSLMTAGLAMWWFNQAGW
Ga0075017_1006278741	3300006059	Watersheds	VVSLRQISSLLGGLGLLLGFALAPHVIPTPFFRTAMGDLVPLVVAVATTILALRNAFESRGHARLFWSLMTAGMVMWSFNQAGWAW
Ga0075017_1006337301	3300006059	Watersheds	VGLLLGYALTPYVFPRPFVRTAMGDLVPLVVAAATAILTLRNAIDSRGHARMFWGLMTVGMAMWCFNQGGWVWFE
Ga0075015_1000896482	3300006102	Watersheds	LSLLLGFALAHQVFASAFLRLAMGDLVPLLVAVAATILTLRNAFDSRGHARLFWSLMTAGMAMWSINQAGWA
Ga0066793_108888601	3300009029	Prmafrost Soil	VSRLQISSLLCGVGLLLAFALAPVVFPNPFFRVAMGDLIPLLAITAAFILSARNAFDSRGHTRLFWSLMATGMAMWCFNQAC
Ga0116214_11793711	3300009520	Peatlands Soil	VVAQRNISALLWGTGLLLAFALAAVVFPDPFFRVAMGDVTPLLAIAAAFILCNRNAFDSRGRTRLFWSLMAAGMAMWCFNAACWTWFEV
Ga0116222_11406331	3300009521	Peatlands Soil	MSRPHISALVCGVGLLVAFALAPAVFPNPFFRVAMGDLTPLLAIAAAVIVSTRNAFDSRGHTRLFWSLMATGMAMWCFNQACWVWFEVVARKPVPDPY
Ga0116218_11659691	3300009522	Peatlands Soil	MSRPHISALVCGVGLLVAFALAPSVFPNPFFRVAMGDLTPLLAIAAAVIVSSRNAFNSRGHTRLFWSLMATGMAMWCFNQACWVWFEVVARKPVPDP
Ga0116105_10211662	3300009624	Peatland	VSRFHKSALLSAIGLLLVFALAPVVFPNPSFRVAMGNVVPLLVIVAAFVVSARNAFDSRGHTRLFWGLMTAGMAMWCYNQACWTWFEVVL
Ga0116105_12542171	3300009624	Peatland	LACGIALLAGFALAPLVIPSPLFRTAMGDLVPLLLITVALIVCARNAFDSRGHTRLFWSLMAAGVAMWCCSQVCWAWIEVVVRKPVPDPFPGDI
Ga0116102_11092491	3300009632	Peatland	VGLLLAYALAPTVFPNPLFRVAMGNLIPLLVIAAACIVSARNAFDSRGHTRLFWSLMTAGMTMWCFNQACW
Ga0116124_11058652	3300009634	Peatland	MSRLHIAALLCGVGLLLAFALAPAVFPNPFVRVAMGDLILLLVIAAAFTLCARNAFDSRGHARLFWSLMATGMAMWCFNQACWVWFEVV
Ga0116110_10795491	3300009643	Peatland	MSRLHISALVSGVGLLVAFALAPAVFPNAYFRVAMGDLTPLLAITAAVIVSARNAFDSRGHTRLFWGLITAGMGMW
Ga0116132_10628501	3300009646	Peatland	MSRLHISALVCGVGLLVAFALAPAVFPNPYFRVAMGDLTPLLAIAAAVIVSSRNAFDSRGHTRLFWSLMATGMAMWCFNQACWVWFEVVARKPVPD
Ga0116224_102440661	3300009683	Peatlands Soil	MSRPHISALVCGVGLLVAFALAPTVFPNPFFRVAMGDLPPLLAIAAAVIVSTRNAFDSRGHTRLFWSLMATGMAMWCFNQACWVWFEVVARKPVPDP
Ga0116223_103684272	3300009839	Peatlands Soil	VSLRPISALLYGAGLLLAFALAPVVFPNPFFRVAMGDLIPLLVTAAAFILCARNAFDSREHTRLFWILMAAGMAMWCFN
Ga0116223_104870932	3300009839	Peatlands Soil	VSRLHISSLFCGVSLLLAFALAPAVFPSPFFRVAMGDIVPLVVIAAACIVSARNAFDSRGHTRLFWSLITTGMAMW
Ga0074044_102243791	3300010343	Bog Forest Soil	VVSRSYISSLLCGIGLLLAFALAPMVLPSPFFRVAMGNLVPLVVLAAGCVVSAGNAFDSRGHTRLFWGLMTLGMAMWCYNQGCWTWFE
Ga0074044_110606011	3300010343	Bog Forest Soil	MSRPHISALVCGVGLLVAFALAPAVFPNPFFRVAMGDLIPLLAIAAAVIVSTRNAIDSRGHTRLFWSLMATGMAMWCFNQACW
Ga0136449_1009521052	3300010379	Peatlands Soil	MSRPHISALVCGVGLLVAFALAPTVFPNPFFRVAMGDLTPLLAIAAAVIVSTRNAFDSRGHTRLFWSLMATGMAMWCFNQACWVWFEVVARK
Ga0137392_109621422	3300011269	Vadose Zone Soil	VVSRLHISSLLSGVGLLLVFFLVPAAFPSPFLRVAIGDLIPLLVVTAAFILSARNAFDSRGHTRLFWSLIAAGMAM
Ga0137392_116342081	3300011269	Vadose Zone Soil	VVSRLHISSLLGGVGLLLALFLVPAVFPSPFLRVAMGDLIPLLLVAAALILSARNAFDSRGHTRLFWSLIAAGMAMWCFNQACWVWFE
Ga0137363_109393091	3300012202	Vadose Zone Soil	LLLCGVGLLLAFALAPVVFPSPLFRVAMGDLIPLLVITAAFMVSARNAFDSRGRTRLFWSLMTAGMAMWSFN
Ga0137360_112957671	3300012361	Vadose Zone Soil	VSRLHISSLLGGVGLLLAFFLVPAAFPSPFFRVAMGDLIPLLMVTAAFILSARNAFDSRGQTRLFWSLIAMGMAMWCFNQAGWVWFEV
Ga0137390_103679881	3300012363	Vadose Zone Soil	VVSRLHISSLLGGVGLLLALFLFAAVFPSPFFRVAMGDLIPLLLVAAALILSARNAFDSRGHTRLFWSLIAAGMAMWCFNQACWVWFE
Ga0137390_107662481	3300012363	Vadose Zone Soil	VSRSHISALLYGTGLLLAFVLAPAVFPNPFFRVAMGDLIPLLVITAAFILSARNAFDSRGHTRLFWSLIAAGMAMWCFNQACWVW
Ga0137413_102888022	3300012924	Vadose Zone Soil	MLGRSISPVVAGIALLLMFALAPVVFPNPFFRIVMGDLIPLVISTATLVLAVRNTVDSRGHTRLFWVLMTAGLVMWWFNQA
Ga0137404_111956281	3300012929	Vadose Zone Soil	LLVCGIALLVAFALAPVVFPNPFFHAAMGNLVPLFVITAAFFFSARNAFDSRGHTRLFWSLMTASMGMWWFNQAGWTWFEVVFRRPIPDPYPGDIVLF
Ga0181527_12113891	3300014153	Bog	MASRSHISSLFGGVGLLLAFVLASAVFPSAFFRVAIGDLVPQLALTVAFVLCARNAFDSRGHTRLFWSLMAMGMAMWCFNAACWTWFEVVVRKPLP
Ga0181529_104629131	3300014161	Bog	LFLCGIGLVLGFALAPLVFTSDWFRVALGDVAPLVVLLAALVLTAKNTLGSRGHTRLFWGLMTASMAMWCFNQASWTWYELIIHKALPDPFIGDIVLFAHV
Ga0181538_102592422	3300014162	Bog	MSRLHIPALLCGVGLLLAFALAPAVFPNPFVRVAMGDLILLLVIAAALTLCARNAFDSRGHTRLFWSLMATGMAMWCFNQACWVWFEVVARKP
Ga0181528_101013851	3300014167	Bog	LFLCGIGLVLGFALAPLVFTGDWFRVALGDVAPLVVLLAALVLTAKNTLGSRGHTRLFWGLMTASMAMWCFNQASWTWYELIIHKALPD
Ga0182014_105396731	3300014491	Bog	MMKRVSRLQIPALLCGVGLLLLTFALVPVVFPSPFLRVAAGDVIPLLVMVAAVIVCTRNAFDSRGHTRLFWGLMTTGMAMWCFNQACWTW
Ga0182021_128936591	3300014502	Fen	MMKRVSRLQIPALLCGVGLLLAFALAPVVFPSPFLRVAAGDLIPLLVIVAAVIVCARNAFDSRGHTRLFWSLMTAGMATWCFNQACWSWYEVVV
Ga0181536_101454991	3300014638	Bog	VVPWRKILPLLGGAGLLVAFALAPVVFPRPFFRVAMGNLVPLAVIVAACIVSVRNAVDSRGHPRLLWGLMAAGMALWGCNQAFYAWLEVVIRRPMHFGFPGDIV
Ga0181525_105620661	3300014654	Bog	MAVLIAFALAPLAVSSTHFKIAMGDLVPLVVISTAFVVSARNGFESRGHTRLFWSLFAAGMGMWAFNQACWAWFEVVIRRP
Ga0181505_108347561	3300016750	Peatland	VSRLHISPLLSGVGLLLAFALAPAVFPSHLFCLAMGDLVPFLVITAACIVSTRNAFDSRGHTRLFWSLVAAGMAMWAFNQACWAWFEVVVRQPLPDPFQGDI
Ga0187818_103110252	3300017823	Freshwater Sediment	VSLRPIPPLLWGAGLLLVFVLAPAVFPSPFFRLAIGDLIPLLVITAACIPSARNAFDSRGHTRLFWSLMTAGLVMWAFNQFMWAWFEVV
Ga0187850_104977991	3300017941	Peatland	MSRSHIPAFVCGIGLLLAFALAPAVFPSPFFRVAMGDVVPLLVIVAACILCARNTFGSRGHTRLFWGLMTAGMAMWCFNQACWTWFEVVLRK
Ga0187808_104496251	3300017942	Freshwater Sediment	VVLPRPISSLLCGLGFLLVFALTPYVFPRPFVRTAMGDLVPLLVSAATTLLTLRNAFDSRGHARLFWSLMTAGMAMWTFNQAGWTWFEVVVRKPLPDPFIGDVILFLHMVP
Ga0187879_106240472	3300017946	Peatland	VVSPKPISALLGGVGLLLAFALASAVFPNPFFRVAMGDLIPLVVIGAAFALSARNAFDSRGHTRLFWSLMTAGLAMWCYNQACWTWFEVLVRKPLPEPFQG
Ga0187879_107892911	3300017946	Peatland	MSRPHISALVCGVCLLVAFALAPAVFPNPYFRVAMGDLTPLLAIAAAVIVSARNVFDSRGHRRLFWSLMTAGMAMWCFNQAYWVWFEVVVRKP
Ga0187876_12386452	3300018003	Peatland	VVAFALAPTVFPNPWFRVAMGDLIPLLLIAAACVVSARNAFDSRGHTRLFWSLMAAGMVLWGFNQACWVWFEVVVRKPLPDPFQGHIVLFLHVV
Ga0187865_12759212	3300018004	Peatland	VSLRHISALLCGVGLLLAFALAPAVFLSPFFRVAMGDLIPLLVITAAFIVSVRNAFDSRGHTRLFWSLVTAGMAMWCFNQACWVWFEVVV
Ga0187888_11186961	3300018008	Peatland	VSKPHISALVCGVGLLVAFALAPAVSPNPFFRVAMGDLTPLLAITAAVIVSARNAFDSRGHTRLFWGLITAGMGMWCFNQAN
Ga0187884_102583131	3300018009	Peatland	VSRLQISALFYGVGLLLAFALAPLVFPSPFFRVAMGDLVPLLVIAAAFIVSARNAFDSRGHTRLFWGLMTAGMAMWFFNQGCWTWFEVVL
Ga0187810_104016952	3300018012	Freshwater Sediment	LLAFALAPAVFPSPFFRVAMGDLIPLLLITAAFIVSARNAFDSRGHTRLFWSLMTAGMVMWCFNQACWGWFEVVVRKPLPDPFYGDV
Ga0187880_10152481	3300018016	Peatland	VSKPHISALVCGVGLLVAFALAPAVSPNPFFRVAMGDLTPLLAIAAAVIVSSRNAFDSRGHTRLFWSLMATGMAMWCFNQACWVWFEVVARKPVPDPYEGDIVLFLHI
Ga0187874_104223371	3300018019	Peatland	MVAPRHISALLWGAGLLLVFFLAPVVFPSPFLRVAMGDLIPLLVIAAACILCARNAFDSRGRTRLFWSLMAAGMAMWCFNAA
Ga0187882_13614861	3300018021	Peatland	MSRPHISALVSGVGLLVAFALAPAVFPNPFFRVAMGDLTPLLAIAAAVIVSSRNAFDSRGHTRLFWSLMATGMAMWCFNQACWVWFEVVARKPVPDPY
Ga0187881_104421701	3300018024	Peatland	MMPVVSRLHISSLLCGVGLLLAYALAPTVFPNPLFRVAMGNLIPLLVIAAACIVSARNAFDSRGHTRLFWSLMTAGMTMWCFNQACW
Ga0187885_103661972	3300018025	Peatland	MMPVVSRLHISSLLCGVGLLLAYALAPTVFPNPLFRVAMGNLIPLLVIAAACIVSARNAFDSRGHTRLFWSLMTAGMTMWCFN
Ga0187867_107666391	3300018033	Peatland	MSRPHISALVCGVGLLVAFALAPAVFPNPYFRVAMGDLTPLLAIAAAVIVSARNAFDSRGHTRLFWSLMTAGLAMW
Ga0187871_100329114	3300018042	Peatland	VSRFHKLAILTATGLLLAFAVVPLIFPNHAFRVAMGNIVPLLVIIAAFVVSGRNAYDSHGHTRLFWGLMTAGMAMW
Ga0187871_105778491	3300018042	Peatland	VVYRNRIPALVGGVGLLLAFALAPVVFPAPFFRVAMGDIVPLLVLLAASIVSAQNAIGSRGHGRLFWSLMTAGMAMWCCNQSFWVW
Ga0187871_106967521	3300018042	Peatland	MPRLHISALVWGVGLLVAFALAPAVFPNPYFRVAMGDLTPLLAIAAAVIVSARNVFDSRGHRRLFWSLMTAGMAMWCFNQAYWVWFEVVVRKP
Ga0187887_100708451	3300018043	Peatland	VSRNHISALLSGTGLLLAFALAPAVFPSAFFRAAMGNLVPLLVLLAAFAFSARNALDSRGHTRLFWGLMAIGMAMWSFNQAAWAWFEVIARQPLPDAFFGDIVLF
Ga0187887_102154311	3300018043	Peatland	MSRTHISALVCGTTLLLAFGLAPTVFPSPFFRVAMGDMVPFFLILAASIVSARNAFDSRGRTRLFWSLMTAGLAMWCFNQSCW
Ga0187859_104647121	3300018047	Peatland	MSRLHIAALLCGVGLLLAFALAPAVFPNPFVRVAMGDLILLLVIAAAFTLCARNAFDSRGHARLFWSLMATGMAMWCFNQACWVWFEVVARKPVPDPYEGDIVLF
Ga0187858_101920062	3300018057	Peatland	VSKPHISALVCGVGLLVAFALAPAVSPNPFFRVAMGDLTPLLAIAAAVIVSSRNAFDSRGHTRLFWSLMATGMAMWCFNQACWVWFEVVARKPVPDPY
Ga0187858_101950732	3300018057	Peatland	VVYRNRIPALVGGVGLLLAFALAPVVFPAPFFRVAMGDIVPLLVLLAASIVSAQNAIGSRGHGRLFWSLMTAGMAMWCCNQSFWVWFEVMLRRTLPNPF
Ga0187771_109209332	3300018088	Tropical Peatland	VPLRYISWLAGAGGILLAFALAPFVYPNATFRVAMGDLVPLLVLVASCVLCVGNLWDSRGHTRLFWSLMAASMAMWCFNQACWAWFEVIFRKP
Ga0193729_10167294	3300019887	Soil	LAFVLAPVVFPNPFFRLAMGDAVPLLVIAAAFIVSARNAFDSRGHTRLFWSLMTAGMAMWCFNQACWMWFEVVIRKPL
Ga0224553_10644262	3300022875	Soil	VVYRNRIPALVGGVGLLLAFALAPVVFPAPFFRVAMGDIVPLLVLLAASIVSAQNAIGSRGHGRLFWSLMTAGMAMWC
Ga0224558_11669831	3300023090	Soil	MSRPHISALVCGVGLLVGFALAPAVFPNPFFRVAVGDLTPLLAIAAAVIVSSRNAFDSRGHTRLFWSLMATGMAMWC
Ga0224521_10547652	3300024233	Soil	VPRLQISALLGGACLLLAFLLAPVVFPNAFFRVAMGDLVPLLAITAAFILSTRNALDSRGHTRLFWSLMAAGMAMWGSNAACWTWFEVLDRKPLPHPFQGDIVLF
Ga0208935_10094411	3300025414	Peatland	VSRFHKSALLSAIGLLLVFALAPVVFPNPSFRVAMGNVVPLLVIVAAFVVSARNAFDSRGHTRLFWGLMTAGMAMWCYNQACW
Ga0208690_10690611	3300025434	Peatland	VSRNHISALLSGTGLLLAFALAPAVFPSAFFRAAMGNLVPLLVLLAAFAFSARNALDSRGHTRLFWGLMAIGMAMWSFNQA
Ga0208714_10663231	3300025527	Arctic Peat Soil	MERVSGRHISSLLFGVGLLLAFAAAPAVFPNPFFRVVMGDVTPLLVITAACILSARNAIDSRGHTRLFWSLMTTGLVMW
Ga0209540_103973032	3300025888	Arctic Peat Soil	MMQAVSRRHISSLLIGVGLLLAFALAPAVFPSPFFRVAMGDLIPLLLIAAAAIVSARNAFDSRGHTRLFWSLMTAGTVMWCFNQAGWACF
Ga0208575_10217942	3300026920	Soil	VVSRPHIPSLLCGVGLLLAFVLAPVVFPNPFFRLAMGDVVPLLVIMAAFIVSARNAFDSRGHTRLFWSLMTAGMAMWCFNQACWTW
Ga0208725_10317842	3300027158	Forest Soil	MLLWGVGVLVAFALAPVMFPNPRFRVAMGDLVPLLVISAAFVVSIRNAFDSRGHTRLFWSLVAASMAMWCFSQSCWAWYEVVINR
Ga0209529_10214612	3300027334	Forest Soil	VGLLLAFALAPLLFRNPAFAVAMGNVVPLLVITAAFVVSARNARDSRGHTRLFWGLMTAGMAMWCYNQVCWTWFEVVLR
Ga0208199_10449322	3300027497	Peatlands Soil	VAQRNISALLWGTGLLLAFALAAVVFPDPFFRVAMGDVTPLLAIAAAFILCNRNAFDSRGRTRLFWSLMAAGMAMWCFNAACWTWFEV
Ga0209735_10286282	3300027562	Forest Soil	VSRLQISALFGGVCLLAGFALAPIIFPNPHFRTAVGDLTPLLIITTAFIFSARNARDSRGHKRLFWSLIAAGMAMWGFNQASWVWFEVLVRQRVPEPF
Ga0209733_11029651	3300027591	Forest Soil	VVSRPHISLLLCGVGLLLAFALAPVVFPSPLFRVAMGDLIPLLVIAAASIVSARNAFDSSGQTRLFWSLMTAGMAMWCFNQAC
Ga0208324_11237251	3300027604	Peatlands Soil	MSRPHISALVCGVGLLVAFALAPAVFPNPFFRVAMGDLTPLLAIAAAVIVSSRNAFNSRGHTRLFWSLMATGMAMWCFNQACWVWFEVVARKPVPDPY
Ga0208324_11475092	3300027604	Peatlands Soil	MQAVSRRHISSLLCGVGLLLAFALAPAVFPSPFFRVAMGDLIPLLLIAAAAVVSARNAFDSRGHTRLFWSLMATGMAMWCFNQACWVWFEVVARKPVPD
Ga0208827_11159822	3300027641	Peatlands Soil	VSRLHISVLVCGVGLLLAFALAPAVFPNPSFRVAMGDLTPLLAIAAAVIVCARNAFDSRGHTRLFWSLMTAGMAMWCFNQAYWVWFEVLVRKPVPDPYWGD
Ga0209117_11362032	3300027645	Forest Soil	VVSRPHISLLLCGVGLLLAFVLAPVAFPSPLFRLAMGDGVPLLVITAAFIVSARNAFDSRGHTRLFWSLMTAGMAMWCFNQACWVWFEVVVRKPLPDPFGGDVVL
Ga0208696_11160031	3300027696	Peatlands Soil	MSRPHISALVCGVGLLVAFALAPAVFPNPFFRVAMGDLTPLLAIAAAVIVSTRNAFDSRGHTRLFWSLMATGMAMWCFNQACWVWF
Ga0209274_105489342	3300027853	Soil	MLLWGVGLLAAFALAPIVFPNPKFRVAMGDLVPLLVISAAFVVATRNAFDSRGHTRLFWSLVAASMAMWCFSQSCWAWYEVVVDRKPL
Ga0209701_1000297810	3300027862	Vadose Zone Soil	VVSRLHISSLLGGVGLLLALFLVPAVFPSPFLRVAMGDLIPLLLVAAALILSARNAFDSRGHTRLFWSLIAAGMAMWCFNQACWVWFEVVVRRP
Ga0209701_106530451	3300027862	Vadose Zone Soil	VVSRLHISSLLSGVGLLLVFFLVPAAFPSPFLRVAIGDLIPLLVVTAAFILSARNASDSRGHTRLFWSLIAAGMAMWCFNQACWVWFEVVVRRP
Ga0209526_101893972	3300028047	Forest Soil	LAFVLAPVVFPNPFFRLAMGDAVPLLVIAAAFIVSARNARDSRGHTRLFWSLMTAGMAMWCFNQACWMWFEVVI
Ga0302267_102091632	3300028745	Bog	VSRLQISALVSGIVLLCAFALAPVVYPNSSFRIAMGDLVPQLFLVAAFIVSARNAFDSRGHTRLFWSLIAAGMGMWCFNQACWTWFEVVIRKP
Ga0302278_102321651	3300028866	Bog	MALLAGFALAPLVFPNPFFRIVMGDLVPQVIITAAFFVSARNAFDSRGHTRLFWSLIAAGMGMWCFNQACWTWFEVVIHKPLPDPFPGDIVLFLHMVPLTAAV
Ga0302154_102849412	3300028882	Bog	VSRLQISALVSGIVLLCAFALAPVVYPNSSFRIAMGDLVPQLFLVAAFIVSARNAFDSRGHTRLFWSLIAAGMGMWCFNQACWTWFEV
Ga0247275_11400821	3300029817	Soil	MWPNVILWKMVAPRHISALLWGAGLLLVFFLAPVVFPSPFLRVAMGDLIPLLVIAAACILCARNAFDSRGRTRLFWSLMAAGMAMWCFNAACWTWFEVLVRKPLPHPFQGDIV
Ga0311369_108568841	3300029910	Palsa	MQAVSRLQISSLLGGVGLLLVFALAPAVFPNPFFRLVMGDLIPLLVITAACTVAAQNAFDSRGHTRLFWSLVAAGMAMWWFNQSCWVWYEVIIRKPVPDPFPGDV
Ga0302186_103065611	3300030004	Bog	VSRLQISALVSGIVLLCAFALAPVVYPNSSFRIAMGDLVPQLFLVAAFIVSARNAFDSRGHTRLFWSLIAAGMGMWCFNQACWTWFEVVIRKPLPDPFPSDVVLF
Ga0265340_102908632	3300031247	Rhizosphere	MLLSAVCVLLAFALAPAVFPSPSFRVAMGDLLPLLLIAGAFIVAGRNALDSRGHTRLFWSLLAMGMGMWCFNQACWTWFELVIRRPLPDPFPGDVV
Ga0310686_1004627131	3300031708	Soil	VVALRHISALLWGTSLLLAFFLASVVFPNPYFRVAMGDLIPLVLLAAASVLCARNALDSRGRTRLFWSRMAVGMAMWCFNAGCWAWFEVVVRKPLPHPFP
Ga0334792_060878_866_1138	3300033888	Soil	MSRPHISALVCGVGLLVGFALAPAVFPNPFFRVAVGDLTPLLAIAAAVIVSSRNAFDSRGHTRLFWSLMATGMAMWCFNQACWVWFEVVAR
Ga0334811_165599_233_541	3300033891	Soil	VSRLQISALLCGVGLLLAFALAPVVFPSPFFRVAMGDLVPLLVIAAAFIVSARNAFDSRGHTRLFWGLMTAGMAMWFFNQGCWTWFEVVLRKPLPEPSPGAMA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099963

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences