Metagenome / Metatranscriptome Family F099930

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F099930
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	84 residues
Representative Sequence	MAHSTPNQKSSPTESVRSNRTGLAEISEKTETRDALYLFACHVEWYTKQSLVEYKELLAAIDDHDGYIRTLAEELLTRSSSRPAY
Number of Associated Samples	67
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	86.27 %
% of genes near scaffold ends (potentially truncated)	25.24 %
% of genes from short scaffolds (< 2000 bps)	69.90 %
Associated GOLD sequencing projects	63
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (71.845 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (42.718 % of family members)
Environment Ontology (ENVO)	Unclassified (46.602 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (66.019 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 60.18% β-sheet: 0.00% Coil/Unstructured: 39.82%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF00691	OmpA	13.59
PF02954	HTH_8	8.74
PF02470	MlaD	6.80
PF13683	rve_3	3.88
PF00196	GerE	2.91
PF07508	Recombinase	2.91
PF07494	Reg_prop	2.91
PF00005	ABC_tran	2.91
PF07730	HisKA_3	1.94
PF01527	HTH_Tnp_1	1.94
PF00158	Sigma54_activat	1.94
PF02405	MlaE	1.94
PF09851	SHOCT	0.97
PF00930	DPPIV_N	0.97
PF02566	OsmC	0.97
PF03551	PadR	0.97
PF06537	DHOR	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	2.91
COG3292	Periplasmic ligand-binding sensor domain	Signal transduction mechanisms [T]	2.91
COG0767	Permease subunit MlaE of the ABC-type intermembrane phospholipid transporter Mla	Cell wall/membrane/envelope biogenesis [M]	1.94
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	1.94
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	1.94
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	1.94
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	1.94
COG0823	Periplasmic component TolB of the Tol biopolymer transport system	Intracellular trafficking, secretion, and vesicular transport [U]	0.97
COG1506	Dipeptidyl aminopeptidase/acylaminoacyl peptidase	Amino acid transport and metabolism [E]	0.97
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.97
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.97
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	0.97
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	0.97
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.97
COG3488	Uncharacterized conserved protein with two CxxC motifs, DUF1111 family	General function prediction only [R]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	71.84 %
Unclassified	root	N/A	28.16 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	71.84 %
Unclassified	root	N/A	28.16 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	71.84 %
Unclassified	root	N/A	28.16 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	51.46 %
Unclassified	root	N/A	28.16 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	48.54 %
Unclassified	root	N/A	28.16 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.94 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	41.75 %
Unclassified	root	N/A	28.16 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.94 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.97 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.97 %
unclassified Terriglobia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia	0.97 %

Name	Rank	Taxonomy	Distribution
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	41.75 %
Unclassified	root	N/A	28.16 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.94 %
Bryobacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae	0.97 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.97 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.16 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	6.80 %
Silvibacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium	6.80 %
Acidipila	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila	3.88 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	2.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.94 %
unclassified Bryobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae	0.97 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.97 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.16 %
Silvibacterium bohemicum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	6.80 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	6.80 %
unclassified Acidipila	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila	3.88 %
Granulicella mallensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	2.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.94 %
Bryobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	0.97 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.97 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.16 %
Silvibacterium bohemicum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	6.80 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	6.80 %
Acidipila sp. EB88	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp. EB88	3.88 %
Granulicella mallensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	2.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.94 %
Bryobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	0.97 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.97 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.97 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_101536846	Not Available	561	Open in IMG/M
3300004479\|Ga0062595_100363011	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1016	Open in IMG/M
3300004479\|Ga0062595_100943488	Not Available	733	Open in IMG/M
3300005436\|Ga0070713_100169804	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1953	Open in IMG/M
3300005439\|Ga0070711_100785324	Not Available	807	Open in IMG/M
3300005445\|Ga0070708_100004986	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	10493	Open in IMG/M
3300005468\|Ga0070707_100003865	All Organisms → cellular organisms → Bacteria	14107	Open in IMG/M
3300005536\|Ga0070697_100011120	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7033	Open in IMG/M
3300005536\|Ga0070697_101114659	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	702	Open in IMG/M
3300005602\|Ga0070762_10163278	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	1341	Open in IMG/M
3300005712\|Ga0070764_10679583	Not Available	633	Open in IMG/M
3300005952\|Ga0080026_10010840	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2138	Open in IMG/M
3300005995\|Ga0066790_10194433	Not Available	867	Open in IMG/M
3300006028\|Ga0070717_10130658	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2159	Open in IMG/M
3300006163\|Ga0070715_10236424	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	948	Open in IMG/M
3300006176\|Ga0070765_100837040	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	870	Open in IMG/M
3300006893\|Ga0073928_10036511	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4618	Open in IMG/M
3300006893\|Ga0073928_10183669	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	1653	Open in IMG/M
3300006904\|Ga0075424_100531103	All Organisms → cellular organisms → Bacteria	1256	Open in IMG/M
3300006904\|Ga0075424_101905202	Not Available	628	Open in IMG/M
3300007076\|Ga0075435_100684032	Not Available	891	Open in IMG/M
3300007982\|Ga0102924_1067410	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1966	Open in IMG/M
3300010400\|Ga0134122_10356031	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1277	Open in IMG/M
3300010880\|Ga0126350_10045939	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	511	Open in IMG/M
3300013297\|Ga0157378_12236341	Not Available	598	Open in IMG/M
3300014489\|Ga0182018_10004862	All Organisms → cellular organisms → Bacteria	11092	Open in IMG/M
3300014501\|Ga0182024_10006225	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	26319	Open in IMG/M
3300014968\|Ga0157379_10062805	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3321	Open in IMG/M
3300020579\|Ga0210407_10031148	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3966	Open in IMG/M
3300020579\|Ga0210407_10557315	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	894	Open in IMG/M
3300020579\|Ga0210407_11220982	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	565	Open in IMG/M
3300020580\|Ga0210403_10164099	All Organisms → cellular organisms → Bacteria	1819	Open in IMG/M
3300020580\|Ga0210403_10291388	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	1337	Open in IMG/M
3300020581\|Ga0210399_10147042	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1948	Open in IMG/M
3300020581\|Ga0210399_10250873	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1475	Open in IMG/M
3300020581\|Ga0210399_10332875	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	1267	Open in IMG/M
3300020581\|Ga0210399_11587813	Not Available	505	Open in IMG/M
3300020582\|Ga0210395_10772199	Not Available	717	Open in IMG/M
3300020583\|Ga0210401_10424554	Not Available	1192	Open in IMG/M
3300020583\|Ga0210401_10736365	Not Available	846	Open in IMG/M
3300021088\|Ga0210404_10241512	Not Available	980	Open in IMG/M
3300021168\|Ga0210406_10001512	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	28160	Open in IMG/M
3300021168\|Ga0210406_10205958	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp. EB88	1630	Open in IMG/M
3300021170\|Ga0210400_10014585	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6238	Open in IMG/M
3300021170\|Ga0210400_10018661	All Organisms → cellular organisms → Bacteria	5431	Open in IMG/M
3300021170\|Ga0210400_10318524	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	1278	Open in IMG/M
3300021171\|Ga0210405_10039583	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3752	Open in IMG/M
3300021178\|Ga0210408_10152447	All Organisms → cellular organisms → Bacteria	1831	Open in IMG/M
3300021180\|Ga0210396_10016947	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6770	Open in IMG/M
3300021180\|Ga0210396_10019643	All Organisms → cellular organisms → Bacteria	6263	Open in IMG/M
3300021403\|Ga0210397_10300767	Not Available	1178	Open in IMG/M
3300021404\|Ga0210389_10242184	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	1410	Open in IMG/M
3300021405\|Ga0210387_10025773	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	4605	Open in IMG/M
3300021420\|Ga0210394_10000325	All Organisms → cellular organisms → Bacteria → Acidobacteria	109445	Open in IMG/M
3300021420\|Ga0210394_10391971	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	1221	Open in IMG/M
3300021420\|Ga0210394_10595552	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp. EB88	972	Open in IMG/M
3300021420\|Ga0210394_11303806	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	620	Open in IMG/M
3300021432\|Ga0210384_10044775	All Organisms → cellular organisms → Bacteria	4043	Open in IMG/M
3300021432\|Ga0210384_10455384	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp. EB88	1152	Open in IMG/M
3300021432\|Ga0210384_10684701	All Organisms → cellular organisms → Bacteria	918	Open in IMG/M
3300021432\|Ga0210384_11134611	All Organisms → cellular organisms → Bacteria	685	Open in IMG/M
3300021478\|Ga0210402_10150928	All Organisms → cellular organisms → Bacteria	2116	Open in IMG/M
3300021478\|Ga0210402_10532486	Not Available	1090	Open in IMG/M
3300021478\|Ga0210402_11704653	Not Available	557	Open in IMG/M
3300021479\|Ga0210410_11429310	Not Available	584	Open in IMG/M
3300021559\|Ga0210409_10203535	All Organisms → cellular organisms → Bacteria	1802	Open in IMG/M
3300021559\|Ga0210409_10340077	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	1349	Open in IMG/M
3300023259\|Ga0224551_1000077	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	10957	Open in IMG/M
3300025320\|Ga0209171_10262153	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	939	Open in IMG/M
3300025910\|Ga0207684_10000994	All Organisms → cellular organisms → Bacteria	31792	Open in IMG/M
3300026217\|Ga0209871_1008550	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1926	Open in IMG/M
3300026294\|Ga0209839_10147233	Not Available	779	Open in IMG/M
3300027537\|Ga0209419_1116610	Not Available	532	Open in IMG/M
3300027583\|Ga0209527_1102933	Not Available	640	Open in IMG/M
3300027610\|Ga0209528_1037907	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	1066	Open in IMG/M
3300027727\|Ga0209328_10194003	Not Available	613	Open in IMG/M
3300027895\|Ga0209624_10265341	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1142	Open in IMG/M
3300027908\|Ga0209006_10115078	All Organisms → cellular organisms → Bacteria	2378	Open in IMG/M
3300028906\|Ga0308309_10030771	All Organisms → cellular organisms → Bacteria	3676	Open in IMG/M
3300028906\|Ga0308309_10820310	Not Available	808	Open in IMG/M
3300029636\|Ga0222749_10104199	All Organisms → cellular organisms → Bacteria	1335	Open in IMG/M
3300029636\|Ga0222749_10157287	Not Available	1111	Open in IMG/M
3300029636\|Ga0222749_10438120	Not Available	698	Open in IMG/M
3300029999\|Ga0311339_10994720	Not Available	787	Open in IMG/M
3300030991\|Ga0073994_12060829	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1056	Open in IMG/M
3300031708\|Ga0310686_104603492	All Organisms → cellular organisms → Bacteria	2204	Open in IMG/M
3300031708\|Ga0310686_118287435	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	854	Open in IMG/M
3300031718\|Ga0307474_10016938	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5284	Open in IMG/M
3300031718\|Ga0307474_10021012	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	4758	Open in IMG/M
3300031753\|Ga0307477_10107929	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1937	Open in IMG/M
3300031753\|Ga0307477_10384411	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	962	Open in IMG/M
3300031754\|Ga0307475_10330014	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp. EB88	1225	Open in IMG/M
3300031754\|Ga0307475_10341923	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1202	Open in IMG/M
3300031754\|Ga0307475_10999585	Not Available	657	Open in IMG/M
3300031754\|Ga0307475_11063283	Not Available	634	Open in IMG/M
3300031820\|Ga0307473_10038224	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2168	Open in IMG/M
3300031823\|Ga0307478_10057384	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2905	Open in IMG/M
3300031823\|Ga0307478_10275544	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1372	Open in IMG/M
3300031962\|Ga0307479_10600656	All Organisms → cellular organisms → Bacteria	1082	Open in IMG/M
3300031962\|Ga0307479_10867627	All Organisms → cellular organisms → Bacteria	876	Open in IMG/M
3300031962\|Ga0307479_11458091	Not Available	642	Open in IMG/M
3300032180\|Ga0307471_100180507	All Organisms → cellular organisms → Bacteria	2081	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.15%
Host-Associated	Host-Associated	4.85%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.26%
Plants	Host-Associated → Plants	4.85%
Aquatic	Environmental → Aquatic	3.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.32%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.85%
Thermal Springs	Environmental → Aquatic → Thermal Springs	3.88%
Peat	Environmental → Terrestrial → Peat	1.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	63.11%
Loam	Environmental → Terrestrial → Soil → Loam	20.39%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.85%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	3.88%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.94%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	57.28%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.74%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	5.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.85%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	3.88%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	3.88%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.94%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	42.72%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	14.56%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.74%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.80%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	4.85%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	3.88%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.94%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	1.94%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.97%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.97%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.97%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.97%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.97%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.97%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005952	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045	Environmental	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007982	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300023259	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 20-24	Environmental	Open in IMG/M
3300025320	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026217	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045 (SPAdes)	Environmental	Open in IMG/M
3300026294	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 (SPAdes)	Environmental	Open in IMG/M
3300027537	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027583	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027610	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030991	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1015368461	3300002245	Forest Soil	RGNRTSLPVISEKTETRDALYLFACHAEWCTTQSLVEYRELLAAIDDHDCYIRTLAEELLTRSSSRPATDTDIETW*
Ga0062595_1003630112	3300004479	Soil	MANSTPDRKSPPVESVRSNGTGLADISNETEPRDALYLFACHVEWCTKQRLVEYKELLAAIDDHDCYIRTLAEELLTRNSSRPAY*
Ga0062595_1009434881	3300004479	Soil	MANSTPNQKSPPAESVRGNRTALAEISEREETRDALYLFACHVEWCTQQSLVEYKELLAAINDHDCYSRTLADELLTRSLSRPAY*
Ga0070713_1001698043	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MANSTPDRKSPPVESVRSNGTGLADISKEKETRDALYLFACHVEWCTKQSLVEYKELLAAIDDHDCYIRTLAEELLTRNSSRPAY*
Ga0070711_1007853241	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MANSTPNQKSPPAESVRGNRTALAEISEREETRDALYLFACHVEWCTQQSLVEYKELLAAIDDHDCHIRTLAEELLTRSSSRPAY*
Ga0070708_1000049866	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MAHSAPNQKSSPTESVRSNRTGLAEISEKTETRDALYLFACHVEWYTKQSLVAYKELLAAIDDHDGYIRTLAEELLTRSSSRPAY*
Ga0070707_1000038656	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MAHSAPNQKSSPTESVRSNRTGLAEISEKTETRDALYLFACHVEWYTTQSLVAYKELLAAIDDHDGYIRTLAEELLTRSSSRPAY*
Ga0070697_1000111205	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MAHSTPNQKSSPTESVRSNRTGLAEISEKTETRDALYLFACHVEWYTKQSLVEYKELLAAIDDHDGYIRTLAEELLTRSSSRPAY*
Ga0070697_1011146591	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	PNQKSSPTESVRSNRTGLAEISEKTETRDALYLFACHVEWYTKQSLVAYKELLAAIDDHDGYIRTLAEELLTRSSSRPAY*
Ga0070762_101632782	3300005602	Soil	MANSTPNQKTSPAETVHSNRTGLAEISEKKTRDPLYLFACHVEWCTKQSLVEYNELLAAMDDHDCYIRTHAEELATRSSSRPTY*
Ga0070764_106795831	3300005712	Soil	MPNSTPNQKSPPAESVCCNRTSLSEVSERNETRDALYLFACHVEWCSKQSLVEYKELLAARDDHDCQIRTLAEELVSRSSSRPTY*
Ga0080026_100108403	3300005952	Permafrost Soil	MANSTPNQKSSPAESVLSNRTGLSDISERKETRDALYLFACHVEWCTRQSLVEHNELLAAMDDHDCYIRTLAEELITRSSSRPRY*
Ga0066790_101944331	3300005995	Soil	MANSTPNQKSSPAESVLSNRTGLSDISERKETRDALYLFACYVEWCTRQSLVEHNELLAAMDDHDCYIRTLAEELITRSSSRPRY*
Ga0070717_101306582	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MAHSTPNQKSSPTESVRSNRTGLAEISEKTETRDALYLFACHVEWYTKQSLVAYKELLAAIDDHDGYIRTLAEELLTRSSSRPAY*
Ga0070715_102364243	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	SPPVESVRSNGTGLADISKEKETRDALYLFACHVEWCTKQSLVEYKELLAAIDDHDCYIRTLAEELLTRNSSRPAY*
Ga0070765_1008370402	3300006176	Soil	MLANIIAPGVEVRKMANSTPNQKSSPAESVRGNRTSLPVISEKTETRDALYLFACHAEWCTTQSLVEYRELLAAIDDHDC
Ga0073928_100365113	3300006893	Iron-Sulfur Acid Spring	MANSTANQKSSPAESVRSNRTGLSDTSERKETRDALYLFACHVEWCTRQSLFEYSELLAAMDDHDCHIRTLAEELVTRSSSRPRYTYIEAW*
Ga0073928_101836692	3300006893	Iron-Sulfur Acid Spring	MRKTAKGTQNQKSSPAESVSSNRTGLSDISERKETRDALYLFACHVEWCTKQSLVEYNELLAAMDDHDDYICTLAEELVTRTHRGLGTDADIEAW*
Ga0075424_1005311032	3300006904	Populus Rhizosphere	MANSTPNQKRPPAESVRSNRTGLSDISGRKETRDALYLFACHVEWCTKQRLVEYNELLAAMDDHDCYIRTLAEELVTRSSPRPTY*
Ga0075424_1019052022	3300006904	Populus Rhizosphere	NSTPDRKSPPVESVRSNGTGLADISKEKETRDALYLFACHVEWCTKQSLVEYKELLAAIDDHDCYIRTLAEELLTRNSSRPAY*
Ga0075435_1006840321	3300007076	Populus Rhizosphere	SGVEVRKMANSTPDRKSPPVESVRSNGTGLADISKEKETRDALYLFACHVEWCTKQSLVEYKELLAAIDDHDCYIRTLAEELLTRNSSRPAY*
Ga0102924_10674102	3300007982	Iron-Sulfur Acid Spring	MANRTPNQKSSPAESVRSNRTGLAEISERKETRDALYLFACHVEWCTKQSLVEYNELLAAMDDHDDYICTLAEELVTRTHRGLGTDADIEAW*
Ga0134122_103560311	3300010400	Terrestrial Soil	KKMANSTPNQKSPPAESVRGNRTALAEISEREETRDALYLFACHVEWCTQQSLVEYKELLAAINDHDCYSRTLADELLTRSLSRPAY*
Ga0126350_100459391	3300010880	Boreal Forest Soil	MANSTPNQKSSPAESVRSNRTGLSDISERNEARDALYLFACHVEWCTKQSLVEYKELLAAIDDHDCYIRTLAEELLTRSSSGWAPEL*
Ga0157378_122363412	3300013297	Miscanthus Rhizosphere	MANSTPNQKSPPAESVRGNRTALAEISEREETRDALYLFACHVEWCTQQSLVEYKELLAAINDHDCYSRTLAD
Ga0182018_100048621	3300014489	Palsa	MANSTPNQKSSPAESVPGNRTGLSDISERKETRDALYLFACHVEWCTKQSLIEYNELLAAMDDHDCYICTLAEELVTRTSSRPSLNNS*
Ga0182024_100062252	3300014501	Permafrost	MANSTPNQKSSPAESVPGNRTGLSDISERKETRDALYLFACHVEWWTKQSLIEYNELLAAMDDHDCYICTLAEELVTRSSSRPRY*
Ga0157379_100628051	3300014968	Switchgrass Rhizosphere	NSTPNQKSPPAESVRGNRTALAEISEREETRDALYLFACHVEWCTQQSLVEYKELLAAINDHDCYSRTLADELLTRSLSRPAY*
Ga0210407_100311484	3300020579	Soil	MANSTPNQKSSPAESVRSNRTGLSEISEKKTRDPLYLFACHVEWCTKQSLVEYNELLAAMDDHDCYIRTLAEELATRSSSRPTY
Ga0210407_105573151	3300020579	Soil	MANSTPNQKSSPAESVRSNRSGLSDMSERKEIRDALYLFACHVEWCTKQSLVEYNELFAAMDDHDCDIRVLAEEL
Ga0210407_112209821	3300020579	Soil	MANNTPNQKSSPTESVRSNRTGLSDKSERKETRDALYLFACHVEWCTKQSLVEYSELLAAMDDHDCHIRSLAEELAARSSSRPTH
Ga0210403_101640992	3300020580	Soil	MANSTPNQKSPQAESVCCNRTSLADRSKNNEHRDALYLFACHVEWCTKQSLVEYNELLAAKDDHDCHIRTLAEELATRSSSRPSTGTDIEA
Ga0210403_102913882	3300020580	Soil	MAHSTPNQKSSPTESVRSNRTGLAEISEKTETRDALYLFACHVEWYTKQSLVEYKELLAAIDDHDGYIRTLAEELLTRSSSGPAY
Ga0210399_101470423	3300020581	Soil	MPHCTRNRKSSPAESVRSNRTGLAEISERTEPRDALYLFACHVEWCTKQSLVEYKELLAAIDDHDGSIRTLAEELLTRSPSRPAY
Ga0210399_102508731	3300020581	Soil	MANSTPNQESSPAESVRSNRTGLAEISEKTETRDALYLFACHVEWCTKQSLVEYKELLAAIDDHDCYIRTVAEELLTRNSSRPAY
Ga0210399_103328752	3300020581	Soil	MANSTPNQKSSPAESVRSDRTGLAEISEKKTRDPLYLFACHVEWCTKQSLVEYNELLAAMDDHDCYIRTLAEELATRSSSRPTY
Ga0210399_115878131	3300020581	Soil	MAHSTPNQKSSPTESVRSNRTGLAEISEKTETRDPLYLFACHVEWYTKQSLVEYRELLAAIDDHDGYIRTLAEELLTRSSSRPAYWRRY
Ga0210395_107721991	3300020582	Soil	MANSTPNQKSPPAESFRSNRTGLSDVSERNETRAALYLFTCHVEWCTKQSLFEYSELLAAMDDHDCHIRTLAEELVTRSSSRPTY
Ga0210401_104245542	3300020583	Soil	MANSTPNQKSPPAESVRGNRTALAEISERVKTRDALYLFACHVEWCTQQSLVEYKELLAAINDHDCYIRTLADELLTRNLSRPAY
Ga0210401_107363651	3300020583	Soil	MEHSTPNQKSSPTESVRGNRTGLAETSEKTETRDALYLFACHVEWYTKQSLVEYKELLAAIDDHDGYIRTLAEELLTRSSSRPAY
Ga0210404_102415121	3300021088	Soil	MANSTPDRKSPPVESVRSNGTGLADISKEEETRDTLYLFACHVEWCTKQSLVEYKELLAAIDDHDCYIRTLAEELLTRNSSRPAY
Ga0210406_100015126	3300021168	Soil	MANSTPNQKTSPAETVHSNRTGLAEISEKKTRDPLYLFACHVEWCTKQSLVEYNELLAAMDDHDCYIRTLAEELATRSSSRPTY
Ga0210406_102059582	3300021168	Soil	MAKSTPNQKSFLAESVRSNRTGVSDISERKETRDAFYLFACHVEWCSKQSLVEYKELLAAIGDHDCHIRTLAEKLLTRSSSRPAY
Ga0210400_100145853	3300021170	Soil	MANSTPNQKSSPAESVSNRTGLAEIGEKTETRDALYLFACHVEWRTKQSLVEYKELLAAIDDHDCCIRTLAEELLTRSSSRPTY
Ga0210400_100186613	3300021170	Soil	MANSTPNQKSSPAESIRNNITGLAEIWEKTETRDALYLFACHVEWCTKQSLLEYKELLAAIDDHDCYICTLAEELLTRSSSRPAY
Ga0210400_103185242	3300021170	Soil	MAHSTPNQKSSPTESVRSNRTGLAEISEKTETRDALYLFACHVEWYTKQSLVEYKELLAAIDDHDGYIRTLAEELLTRSSSRPAY
Ga0210405_100395832	3300021171	Soil	MANSTPNQKSSPAESVRSNRSGLSDISERKETRDALYLFACHVEWCTKQSLVEYNELLAAMDDHDCYICTLAEELVTRSSSRPGY
Ga0210408_101524471	3300021178	Soil	SPAESVRSNRSGLSDMSERKETRDALYLFACHVEWCTKQSLVEYNELFAAMDDHDCDIRVLAEELATRSSSRPTY
Ga0210396_100169474	3300021180	Soil	MANSTPNQKSSPAETVRSNRTGLAEISEKKTRDPLYLFACHVEWCTKQSLVEYNELLAAMDDHDCYIRTLAEELATRSSSRPTY
Ga0210396_100196432	3300021180	Soil	MAHSTPNQKSSPTESVRSNRTGLAEISEKTETRDALYLFACHVEWYTKQSLVKYKELLAAIDDHDGYIRTLAEELLTRSSSRPAY
Ga0210397_103007671	3300021403	Soil	MANSTPNQKNSPAESVRSNRSGLSDISERKETRDALYLFACHVEWCTKQSLVEYNELLAAMDDHDCYIRTLAEELATRSSSRPTY
Ga0210389_102421842	3300021404	Soil	MANSTPNQESSPAESVRSNRTGLAEISEKTETRDALYLFACHVEWYTKQSLVEYKELLAAIDDHDGYIRTLAEELLTRSSSGPAY
Ga0210387_100257732	3300021405	Soil	MANNTPNQKSSPAESVRCNRTGLAKISEKTETRDALYLLACHVEWCTKQSLVKYNELLLAAMDDHDGYIRTLAEELLTRSSSRPAY
Ga0210394_100003258	3300021420	Soil	MPNSTPNQKSPPAESVCCNRTSLSEVSERNETRDALYLFACHVEWCSKQSLVEYKELLAARDDHDCQIRTLAEELVSRSSSRPTY
Ga0210394_103919713	3300021420	Soil	MANRTPNQKSSPAESVRSNRTGLAEISERKETRDALYLFACHVEWCTKQSLVEYNELLAAMDDHDDYICTLAEELVTRTHRGLGTDADIEAW
Ga0210394_105955522	3300021420	Soil	MAHTTPNQKSSPTESVRSNRTGLAEISEKTETRDALYLFACHVEWYTKQSLVEYKELLAAIDDHDGYIRTLAEELLTRSSSRPAY
Ga0210394_113038061	3300021420	Soil	MANSTPNQKSSPAESVRSDRTGLAEISEKKTRDPLYLFACHVEWCTKQSLVEYNELLAAMDDHDCYIRTHAE
Ga0210384_100447752	3300021432	Soil	MANSTPNQKSSPAESVRSNRSGLSDMSERKETRDALYLFACHVEWCTKQSLVEYNELLAAMDDHDCDIRVLAEELATRSSSRPTY
Ga0210384_104553842	3300021432	Soil	MANSTPNQESSPAESVRSNRTGLAEISEKTETRDALYLFACHVEWCTKQSLVEYKELLAAIDDHDCYIRTV
Ga0210384_106847012	3300021432	Soil	MANSTPNQKNSPAESVRSNRSGLSDISERKETRDALYLFACHVEWCTKQSLVEYNELLAAMDDHDCYICTLAEELVTRSSSRPTY
Ga0210384_111346112	3300021432	Soil	MANSTPNQKSPPAESVRGNRTALAEISERVKTRDALYLFACHVEWCTQQSLVEYKELLAAINDHDCYIRTLADELLTRN
Ga0210390_106873852	3300021474	Soil	MAHSTPNQKSSPTESVRSNRTGLAETSEKTETRDALYLFACHVEWYTKQSLVEYKELLAAIDDHDGYI
Ga0210402_101509282	3300021478	Soil	MAHTTPNQKSSPTESVRSNRTDPSDKSERKETRDALYLFACHVEWCTKQSLVEYNELLAAMDDHDCHIRTLAEELATRNSSRPTH
Ga0210402_105324861	3300021478	Soil	RHNSRGIEVRKMAHSTPNQKSSPAESVPSNRTDLSDVSERNETRDALYLFACHVEWCTKQSLFEYSELLAAMDDHDCHIRTLAEELATRSSSRPSTGTDIEAW
Ga0210402_117046531	3300021478	Soil	MANSTPNQKSSPAESVSNRTGLAEIWEKTETRDALYLFACHVEWYTKQSLVEYKELLAAIDDHDGYIRTLAEELLTLSSSRPAY
Ga0210410_114293101	3300021479	Soil	MAHSTPNQKSSPTESVRSNRTGLAEISEKTETRDALYLFACHVEWYTKQSLVEYKELLAAIDDHDGYIRTLAEQLLTRSSSR
Ga0210409_102035353	3300021559	Soil	PAESVRSNRSGLSDMSERKETRDALYLFACHVEWCTKQSLVEYNELFAAMDDHDCDIRVLAEELATRSSSRPTY
Ga0210409_103400771	3300021559	Soil	MEHSTPNQKSSPTESVRGNRTGLSGISEKTETRDALYLFACHVEWYTKQSLVEYKELLAAIDDHDGYIRTLAEELLTRSSSRPAY
Ga0224551_10000774	3300023259	Soil	MANSTPNQKRSPAESVRTNRTGLSDISERTEARDALYLFACHVEWCTKQSLVEYNELLAAMDDHDEYICTLAKELVTRSSPGLRTDTNIEAW
Ga0209171_102621532	3300025320	Iron-Sulfur Acid Spring	MRKTAKGTQNQKSSPAESVSSNRTGLSDISERKETRDALYLFACHVEWCTKQSLVEYNELLAAMDDHDDYICTLAEELVTRTHRGLGTDADIEAW
Ga0207684_1000099418	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MAHSAPNQKSSPTESVRSNRTGLAEISEKTETRDALYLFACHVEWYTKQSLVAYKELLAAIDDHDGYIRTLAEELLTRSSSRPAY
Ga0209871_10085502	3300026217	Permafrost Soil	MANSTPNQKSSPAESVLSNRTGLSDISERKETRDALYLFACHVEWCTRQSLVEHNELLAAMDDHDCYIRTLAE
Ga0209839_101472332	3300026294	Soil	MANSTPNQKSSPAESVLSNRTGLSDISERKETRDALYLFACYVEWCTRQSLVEHNELLAAMDDHDCYIRTLAEELITRSSSRPRY
Ga0209419_11166101	3300027537	Forest Soil	MAHSTPNQKSSPTESVRSNRTGLAEISEKTETRDALYLFACHVEWYTKQSLVEYKELLAAIDDHDGYIRTLAEELLTR
Ga0209527_11029332	3300027583	Forest Soil	MAHSTPNQKSSPTESVRSNRTGLAEISEKTETRDALYLFACHVEWYTKQSLVEYKELLAAIDDHDCYIRTLAEELLTRSSSGWAPEL
Ga0209528_10379072	3300027610	Forest Soil	MAHSTPNQKSSPTESVRSNRTGLAEISEKTETRDALYLFACHVEWYTKQSLVEYKELLAAIDDHDGYIRTLAEELLARSSSRPAY
Ga0209328_101940031	3300027727	Forest Soil	MAHSTPNQKSSPTESVRSNRTGLAETSEKTETRDALYLFACHVEWYTKQSLVEYKELLAAIDDHDGYIRTLAEELLTRSSSRPAY
Ga0209624_102653412	3300027895	Forest Soil	MANSTPNQKSPPAESVCCNRTSLADRSKNNEHRDALYLFACHVEWCTKQSLVEYNELLAAKDDHDCHIRTLAEELATRSSSRPSTGTDIEA
Ga0209006_101150782	3300027908	Forest Soil	MLANIIAPGVEVRKMANSTPNQKSSPAESVRSNRTGLSDISQRMETRDALYLFACHVEWCTKQSLVEYNELLAAMVNHDCYIRTLAEELLTRSSSRPAY
Ga0308309_100307711	3300028906	Soil	PNQKSSPTESVRSNRTGLAEISEKTETRDALYLFACHVEWYTKQSLVEYKELLAAIDDHDGYIRTLAEELLTRSSSRPAY
Ga0308309_108203101	3300028906	Soil	MANSTPNQKSSPAESVRGNRTSLPVISEKTETRDALYLFACHAEWCTTQSLVEYRELLAAIDDHDCYIRTLAEELLT
Ga0222749_101041992	3300029636	Soil	MANSTPNQKTSPAETVHSNRTGLAEISEKKTRDPLYLFACHVEWCTKQSLVEYNELLAAMDDHDCDIRVLAEELATRSSSRPTY
Ga0222749_101572872	3300029636	Soil	MAHSTPNQKSSPTESVRSNRTGQAEISEKTETRDALYLFACHVEWYTKQSLVEYKELLAAIDNHDGYIRTLAEELLTRSSSRPAY
Ga0222749_104381202	3300029636	Soil	SPAESVRSNRTGLSNISESKETCDALYLFACHVEWCTKQNLVEYNELLAAMDDHDCYIRTLAEELATRSSSRPSIGTDIEA
Ga0311339_109947202	3300029999	Palsa	MANSTPNQKSSPVESVRSNRTGLSDMSERKETRDALYLFACHVEWCTKQSLVEYNELRAAMDHHDCYIRTLAEELVTRSSSRPRGTDTDIEA
Ga0073994_120608291	3300030991	Soil	MANSTPNQNSAESVRSNRTGLSDISEKKETRDALYLFACHVEWCTKQSLVEYNELLAAMDDHDCYIRTLAEGLVTRSSSRPTY
Ga0310686_1046034924	3300031708	Soil	MANSTPNQKSSPAESVRCNRTGLSDMERKETRDALYLFACHVEWCTKQSLVEYNELLAAMDHHDSYIRTLAEELVTRSSSRTTY
Ga0310686_1182874352	3300031708	Soil	MANRTPNQKSSPAELVRCNRTGLSDMSERKETRDALYLFACHVECCTKQSLVEYNELLAAMDHHDCHIRTLAEELVTRNSYRPTYCTDIGAW
Ga0307474_100169382	3300031718	Hardwood Forest Soil	MAHSTPNQKSSPTESVRRNRTGLAEISEKTETRDALYLFACHVEWYTKQSPVEYKELLAAIDDHDGYIRTLAEELLTRS
Ga0307474_100210121	3300031718	Hardwood Forest Soil	MRKMANSTPNQTSSPAESVRSNRTGLAEISEKTETRDALYLFACHVEWCTKQSLIEYKELLAAINDHDGYIRTLAEELLIRSSSRPAY
Ga0307477_101079291	3300031753	Hardwood Forest Soil	TPNQKSSPAETVRSNRTGLAEISEKKTRDPLYLFACHVEWCTKQSLVEYNELLAAMDDHDCYIRTLAEELATRSSSRPTY
Ga0307477_103844112	3300031753	Hardwood Forest Soil	MAHSTPNQKSSQTESVRSNRTGLAEVSEKTETRDALYLFACHVEWYTKQSLVEYKELLAAIDDDDGYIRTLAEELLTRSSSRPAY
Ga0307475_103300141	3300031754	Hardwood Forest Soil	MANSTRNQKSSPAESVSNRTGLAEIWEKTETRDALYLFACHVEWRTKQSLVEYKELLAAIDDHDCCIRTLAEELLTRSSSKPTY
Ga0307475_103419232	3300031754	Hardwood Forest Soil	MANSTPNQKNSPAESVRSNRSGLSDISERKETRDALYLFACHVEWCTKQSLVEYKELLAAIDDHDGYIRTLAEELLTRSSSRPAY
Ga0307475_109995851	3300031754	Hardwood Forest Soil	MAHSTPNQKSSQTESVRSNRTGLAEVSEKTETRDALYLFACHVEWYTKQSLVEYKELLAAIDDDDGYIRILAEELLTRSSSRPAY
Ga0307475_110632832	3300031754	Hardwood Forest Soil	KMAHSTPNQKSSPTESVRSNRTGLAEISEKTETRDALYLFACHVEWYTKQSPVEYKELLAAIDDHDGYIRTLAEELLTRS
Ga0307473_100382243	3300031820	Hardwood Forest Soil	MANSTPDRKSPPVESVRSNGAGLADISKEKETRDALYLFACHVEWCTKQSLVEYKELLAAIDDHDCYIRTLAEELLTRNSSRPAY
Ga0307478_100573844	3300031823	Hardwood Forest Soil	MAHSTPNQKSSPTESVRSNRTGLAEISEKTETRDALYLFACHVEWYTKQSPVEYKELLAAIDDHDGYIRTLAEELLTRS
Ga0307478_102755441	3300031823	Hardwood Forest Soil	MANSTPNQKNSPAESVRSNRSGLSDISERKETRDALYLFACHVEWCTKQSLVEYKELLAAIDDHDGYIRTLAE
Ga0307479_106006562	3300031962	Hardwood Forest Soil	MVNSTPDRKSPPVESVRSNGTGLADISNETEPRDALYLFACHVEWCTKQRLVEYKELLAAIDDHDCYIRTLAEELLTRNSSRPAY
Ga0307479_108676271	3300031962	Hardwood Forest Soil	MANSTPNQKSSPAESDRSNRTGLAEISEKTETRDPLYLFACHVEWWTKRSLVEYKELLAAIDHHDCYIRTLAEELLTRSSSSPPY
Ga0307479_114580911	3300031962	Hardwood Forest Soil	MANSTPNQKSSPAESVRSNRSGLSDISKRKDTRDALYLFACHVAWCTKQSLVEYNELLAAMDDHDCYICTLAEELVTRSSSRPRY
Ga0307471_1001805074	3300032180	Hardwood Forest Soil	MANSTPNQKSSPAESVSNRTGLAEIWEKTETRDALYLFACHVEWRTKQSLVEYKELLAAIDDHDCCIRTLAEELLTRSSSSPAY

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099930

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences