Metagenome / Metatranscriptome Family F099926

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F099926
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	66 residues
Representative Sequence	MFNRVVSVCSFLMVILSVAACGLGAWWTLIGRISVGDGVFMMAGWCVSAIVFSYRASDPAWLDPISIIKSR
Number of Associated Samples	84
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	66.02 %
% of genes near scaffold ends (potentially truncated)	29.13 %
% of genes from short scaffolds (< 2000 bps)	91.26 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.67

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (72.816 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil (9.709 % of family members)
Environment Ontology (ENVO)	Unclassified (35.922 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (50.485 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 57.58% β-sheet: 0.00% Coil/Unstructured: 42.42%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.67
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.67
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF01987	AIM24	8.74
PF01699	Na_Ca_ex	6.80
PF01804	Penicil_amidase	5.83
PF01408	GFO_IDH_MocA	3.88
PF13761	DUF4166	1.94
PF13240	zinc_ribbon_2	1.94
PF07813	LTXXQ	0.97
PF02826	2-Hacid_dh_C	0.97
PF07940	Hepar_II_III	0.97
PF07687	M20_dimer	0.97
PF03471	CorC_HlyC	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG2013	AIM24 protein, required for mitochondrial respiration	Energy production and conversion [C]	8.74
COG0387	Cation (Ca2+/Na+/K+)/H+ antiporter ChaA	Inorganic ion transport and metabolism [P]	6.80
COG0530	Ca2+/Na+ antiporter	Inorganic ion transport and metabolism [P]	6.80
COG2366	Acyl-homoserine lactone (AHL) acylase PvdQ	Secondary metabolites biosynthesis, transport and catabolism [Q]	5.83
COG3678	Periplasmic chaperone Spy, Spy/CpxP family	Posttranslational modification, protein turnover, chaperones [O]	3.88
COG5360	Uncharacterized conserved protein, heparinase superfamily	General function prediction only [R]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	72.82 %
Unclassified	root	N/A	27.18 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	72.82 %
Unclassified	root	N/A	27.18 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	72.82 %
Unclassified	root	N/A	27.18 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	44.66 %
Unclassified	root	N/A	27.18 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	1.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	41.75 %
Unclassified	root	N/A	27.18 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1.94 %

Name	Rank	Taxonomy	Distribution
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	40.78 %
Unclassified	root	N/A	27.18 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.18 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	19.42 %
unclassified Bryobacterales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales	10.68 %
Bryobacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae	1.94 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.18 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	19.42 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	10.68 %
unclassified Bryobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae	1.94 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.18 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	17.48 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	10.68 %
Bryobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	1.94 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.18 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	10.68 %
Candidatus Solibacter usitatus Ellin6076	isolate	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus → Candidatus Solibacter usitatus Ellin6076	8.74 %
Bryobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	1.94 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908032\|Perma_A_C_ConsensusfromContig134542	Not Available	660	Open in IMG/M
2170459012\|GOYVCMS01ESOVE	Not Available	502	Open in IMG/M
3300002071\|JGIcombinedJ21915_10221039	Not Available	668	Open in IMG/M
3300002568\|C688J35102_118634926	Not Available	579	Open in IMG/M
3300002568\|C688J35102_119559595	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	720	Open in IMG/M
3300002569\|JGI24136J36422_10129673	Not Available	663	Open in IMG/M
3300004114\|Ga0062593_101450533	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	736	Open in IMG/M
3300004801\|Ga0058860_12184745	Not Available	565	Open in IMG/M
3300005181\|Ga0066678_10488211	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	819	Open in IMG/M
3300005328\|Ga0070676_10921045	All Organisms → cellular organisms → Bacteria	652	Open in IMG/M
3300005328\|Ga0070676_11217623	Not Available	573	Open in IMG/M
3300005329\|Ga0070683_100123256	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2449	Open in IMG/M
3300005329\|Ga0070683_100465202	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	1207	Open in IMG/M
3300005330\|Ga0070690_101124189	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300005338\|Ga0068868_100857091	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	823	Open in IMG/M
3300005338\|Ga0068868_102117287	Not Available	535	Open in IMG/M
3300005340\|Ga0070689_100617880	All Organisms → cellular organisms → Bacteria	940	Open in IMG/M
3300005344\|Ga0070661_101792609	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300005353\|Ga0070669_100226828	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	1479	Open in IMG/M
3300005367\|Ga0070667_101413325	Not Available	653	Open in IMG/M
3300005544\|Ga0070686_101697540	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300005617\|Ga0068859_101545450	All Organisms → cellular organisms → Bacteria	733	Open in IMG/M
3300005841\|Ga0068863_100104704	All Organisms → cellular organisms → Bacteria → Acidobacteria	2692	Open in IMG/M
3300005841\|Ga0068863_102062528	Not Available	580	Open in IMG/M
3300005938\|Ga0066795_10066153	Not Available	1069	Open in IMG/M
3300006055\|Ga0097691_1032325	All Organisms → cellular organisms → Bacteria	2040	Open in IMG/M
3300006086\|Ga0075019_10500637	Not Available	753	Open in IMG/M
3300006162\|Ga0075030_100631317	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus → Candidatus Solibacter usitatus Ellin6076	849	Open in IMG/M
3300006163\|Ga0070715_10288552	All Organisms → cellular organisms → Bacteria	873	Open in IMG/M
3300006237\|Ga0097621_100189600	All Organisms → cellular organisms → Bacteria → Acidobacteria	1780	Open in IMG/M
3300006358\|Ga0068871_100097572	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	2457	Open in IMG/M
3300006642\|Ga0075521_10161636	Not Available	1053	Open in IMG/M
3300006642\|Ga0075521_10429601	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus → Candidatus Solibacter usitatus Ellin6076	644	Open in IMG/M
3300006864\|Ga0066797_1136634	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus → Candidatus Solibacter usitatus Ellin6076	857	Open in IMG/M
3300006864\|Ga0066797_1318360	Not Available	543	Open in IMG/M
3300009029\|Ga0066793_10244628	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus → Candidatus Solibacter usitatus Ellin6076	1041	Open in IMG/M
3300009038\|Ga0099829_11541784	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300009093\|Ga0105240_11523867	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300009098\|Ga0105245_10571092	All Organisms → cellular organisms → Bacteria	1155	Open in IMG/M
3300009098\|Ga0105245_13112427	Not Available	514	Open in IMG/M
3300009101\|Ga0105247_11190011	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300009177\|Ga0105248_11434965	All Organisms → cellular organisms → Bacteria	781	Open in IMG/M
3300010397\|Ga0134124_10171725	All Organisms → cellular organisms → Bacteria	1949	Open in IMG/M
3300011119\|Ga0105246_10795327	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	839	Open in IMG/M
3300012212\|Ga0150985_108423762	Not Available	552	Open in IMG/M
3300012212\|Ga0150985_111490250	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	737	Open in IMG/M
3300012212\|Ga0150985_113617873	Not Available	532	Open in IMG/M
3300012469\|Ga0150984_100397490	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	1164	Open in IMG/M
3300012469\|Ga0150984_112809222	Not Available	568	Open in IMG/M
3300013297\|Ga0157378_11584984	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	700	Open in IMG/M
3300013306\|Ga0163162_10348755	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	1613	Open in IMG/M
3300013306\|Ga0163162_12959933	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300014325\|Ga0163163_11276103	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	797	Open in IMG/M
3300014325\|Ga0163163_11643700	All Organisms → cellular organisms → Bacteria → Acidobacteria	703	Open in IMG/M
3300014490\|Ga0182010_10294385	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus → Candidatus Solibacter usitatus Ellin6076	870	Open in IMG/M
3300014498\|Ga0182019_10004750	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	6999	Open in IMG/M
3300014968\|Ga0157379_11236716	All Organisms → cellular organisms → Bacteria	719	Open in IMG/M
3300014968\|Ga0157379_11656649	All Organisms → cellular organisms → Bacteria	626	Open in IMG/M
3300014969\|Ga0157376_10319274	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	1476	Open in IMG/M
3300014969\|Ga0157376_11309316	All Organisms → cellular organisms → Bacteria	755	Open in IMG/M
3300016404\|Ga0182037_11959015	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	525	Open in IMG/M
3300017792\|Ga0163161_10735638	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	824	Open in IMG/M
3300018083\|Ga0184628_10298944	All Organisms → cellular organisms → Bacteria	846	Open in IMG/M
3300018431\|Ga0066655_10387326	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	921	Open in IMG/M
3300018476\|Ga0190274_12137430	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	657	Open in IMG/M
3300020070\|Ga0206356_11361935	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300022526\|Ga0224533_1020999	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	1127	Open in IMG/M
3300023091\|Ga0224559_1020513	Not Available	2800	Open in IMG/M
3300023091\|Ga0224559_1138980	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus → Candidatus Solibacter usitatus Ellin6076	871	Open in IMG/M
3300025457\|Ga0208850_1038654	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus → Candidatus Solibacter usitatus Ellin6076	808	Open in IMG/M
3300025579\|Ga0207927_1002708	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	7120	Open in IMG/M
3300025579\|Ga0207927_1010894	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	3070	Open in IMG/M
3300025619\|Ga0207926_1081845	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	816	Open in IMG/M
3300025852\|Ga0209124_10236350	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus → Candidatus Solibacter usitatus Ellin6076	709	Open in IMG/M
3300025924\|Ga0207694_10908796	All Organisms → cellular organisms → Bacteria	744	Open in IMG/M
3300025936\|Ga0207670_10116150	All Organisms → cellular organisms → Bacteria	1937	Open in IMG/M
3300025937\|Ga0207669_10761684	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	800	Open in IMG/M
3300025944\|Ga0207661_12042581	Not Available	519	Open in IMG/M
3300025944\|Ga0207661_12101125	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300026023\|Ga0207677_11328606	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	661	Open in IMG/M
3300026089\|Ga0207648_11835418	Not Available	568	Open in IMG/M
3300026095\|Ga0207676_10231333	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	1653	Open in IMG/M
3300026118\|Ga0207675_101381574	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	725	Open in IMG/M
3300026223\|Ga0209840_1103085	Not Available	615	Open in IMG/M
3300026273\|Ga0209881_1038255	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	1174	Open in IMG/M
3300026273\|Ga0209881_1135383	Not Available	615	Open in IMG/M
3300026551\|Ga0209648_10192929	All Organisms → cellular organisms → Bacteria	1563	Open in IMG/M
3300027898\|Ga0209067_10398741	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	770	Open in IMG/M
3300030114\|Ga0311333_11235392	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	639	Open in IMG/M
3300030730\|Ga0307482_1138293	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300031232\|Ga0302323_102540345	Not Available	585	Open in IMG/M
3300031344\|Ga0265316_10013071	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	7404	Open in IMG/M
3300031681\|Ga0318572_10961625	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	507	Open in IMG/M
3300031754\|Ga0307475_11358776	Not Available	549	Open in IMG/M
3300031902\|Ga0302322_101888090	Not Available	733	Open in IMG/M
3300031938\|Ga0308175_100285810	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	1674	Open in IMG/M
3300031939\|Ga0308174_11889229	Not Available	514	Open in IMG/M
3300031962\|Ga0307479_11812360	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300032074\|Ga0308173_11562210	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	621	Open in IMG/M
3300032261\|Ga0306920_102760094	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	670	Open in IMG/M
3300033289\|Ga0310914_10643737	All Organisms → cellular organisms → Bacteria	954	Open in IMG/M
3300034125\|Ga0370484_0075086	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus → Candidatus Solibacter usitatus Ellin6076	863	Open in IMG/M
3300034820\|Ga0373959_0216313	Not Available	512	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	59.22%
Host-Associated	Host-Associated	40.78%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	55.34%
Plants	Host-Associated → Plants	39.81%
Aquatic	Environmental → Aquatic	3.88%
Human	Host-Associated → Human	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	49.51%
Rhizosphere	Host-Associated → Plants → Rhizosphere	21.36%
Rhizoplane	Host-Associated → Plants → Rhizoplane	14.56%
Peat	Environmental → Terrestrial → Peat	5.83%
Sediment	Environmental → Aquatic → Sediment	3.88%
Roots	Host-Associated → Plants → Roots	3.88%
Digestive System	Host-Associated → Human → Digestive System	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	29.13%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	11.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.65%
Loam	Environmental → Terrestrial → Soil → Loam	10.68%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.71%
Soil	Host-Associated → Plants → Rhizosphere → Soil	9.71%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	5.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.88%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	3.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.91%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	11.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.65%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	10.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	9.71%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	8.74%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.74%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.80%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	5.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.88%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	3.88%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.88%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	3.88%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.91%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.94%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.97%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.97%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.97%

Habitat	Taxonomy	Distribution
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	9.71%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	5.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.85%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.88%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	3.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.88%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.91%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.91%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	2.91%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	2.91%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	2.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.94%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	1.94%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	1.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.94%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.94%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.97%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.97%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.97%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.97%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.97%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.97%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.97%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.97%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908032	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Perma_all	Environmental	Open in IMG/M
2170459012	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO1O1 lysis Rhizosphere grass	Environmental	Open in IMG/M
3300002071	Barrow Graham LP Ref core NGADG0011-312 (Barrow Graham LP Ref core NGADG0011-312,NGADG0011-212, ASSEMBLY_DATE=20131010)	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300002569	Arctic peat soil from Barrow, Alaska, USA - Barrow Graham LP Ref core NGADG0011-212	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004801	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005938	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-191	Environmental	Open in IMG/M
3300006055	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006642	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D	Environmental	Open in IMG/M
3300006864	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 3 DNA2013-193	Environmental	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014490	Permafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaG	Environmental	Open in IMG/M
3300014498	Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022526	Peat soil microbial communities from Stordalen Mire, Sweden - 717 E1 10-14	Environmental	Open in IMG/M
3300023091	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 30-34	Environmental	Open in IMG/M
3300025457	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025579	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025619	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025852	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 011-22A (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026223	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-190 (SPAdes)	Environmental	Open in IMG/M
3300026273	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 3 DNA2013-193 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300030114	I_Fen_E2 coassembly	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031232	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3	Environmental	Open in IMG/M
3300031344	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG	Host-Associated	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031902	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300034125	Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_tus_01_15	Environmental	Open in IMG/M
3300034820	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Perma_A_C_02176300	2124908032	Soil	MVILSVVAFGLGAWWTLIGRISEGDGVFMLFGWCLCGIVFWYRAVDPAYLDAVSIIKSR
N56_00289620	2170459012	Grass Soil	SLCSFLMVILSVAAFGMGAWFTMIGRISVGDGVFMMAGWCVSAIVFSYRAIDPAYLDPISIIKSR
JGIcombinedJ21915_102210391	3300002071	Arctic Peat Soil	MLNRVVSVCSFFMVILSVVAFGLGAWWTLIGRISEGDGVFMLFGWCVSAIVFSYRAIDPAYLDAVSIIK
C688J35102_1186349261	3300002568	Soil	MFDRVVSLCSFLMVILSVAAFGMGAWWTLISRISVGDGVFMMAGWCVSAIVFSYRAIDPAYLDPISIIKSR*
C688J35102_1195595952	3300002568	Soil	MFNRVVCVGSFFMVLLSVAAIGMGAWWTFIGAISQGDGLFLMSGWCVSALVFLYRAMDPVYLDPISIIKSR*
JGI24136J36422_101296731	3300002569	Arctic Peat Soil	MLNRVVSVCSFFMVILSVVAFGLGAWWTLIGRISEGDGVFMLFGWCVSAIVFSYRAIDPAYLDAVSI
Ga0062593_1014505331	3300004114	Soil	MLNRVVCVCSFLMVLLSVASAAMGAWWTFESRISVGDGVFMMAGWIVSAIVFSYRAADPDYLDPISIIKSR*
Ga0058860_121847452	3300004801	Host-Associated	ASAAMGAWWTFESRISVGDGVFMMAGWIVSAIVFSYRAADPDYLDPISIIKSR*
Ga0066678_104882112	3300005181	Soil	MFNRVVCVGSFFMVLLSVAAVGMGAWWTFIGAISQGDGLFLMSGWGVSALVFLYRAIDPVYLDPISIIKSR*
Ga0070676_109210451	3300005328	Miscanthus Rhizosphere	MLNRVVCVCSFLMVLLSLASAAMGAWWTFESRISVGDGVFMMAGWIVSAIVFSYRAADPDYLDPISIIKSR*
Ga0070676_112176231	3300005328	Miscanthus Rhizosphere	MLNRVVSVCSFLMVLLSLTMFVLGAWWTCDGRITPGDGMFLMGGWLVSALVFSYRAADPDYLDPVSIIKSR*
Ga0070683_1001232562	3300005329	Corn Rhizosphere	MFNRVVRLGSLFMVLLSVAAIGMGAWWTFIGAISQGDGLFLMSGWCVSALVFLYRAMDPVYLDPISIIKSR*
Ga0070683_1004652022	3300005329	Corn Rhizosphere	AMFALGAWWTCDGRITPGDGVFLMGGWLVSALVFSYRAADPDYLDPISIIKSR*
Ga0070690_1011241892	3300005330	Switchgrass Rhizosphere	MLNRVVCVCSFLMVLLSVASAAMGAWWTFESRISVGDGVFMMAGWIVSAIVFSYRAADPDYLDPVSIIKSR*
Ga0068868_1008570911	3300005338	Miscanthus Rhizosphere	MLNRIVSVCSFLMVLLSLAMFALGAWWTCDGRITPGDGVFLMGGWLVSALVFSYRAADPDYLDPISIIKSR*
Ga0068868_1021172871	3300005338	Miscanthus Rhizosphere	MLNRGVVSLCSFIVMMLSLVFFGMSGWWTLTGRISEGDGVFMLGGWLLAALVFGARAADPVYLDAVSIVKGR*
Ga0070689_1006178802	3300005340	Switchgrass Rhizosphere	MFNRVVSVCSFLMVILSVAACGLGAWWTLIGRISVGDGVFMMAGWCVSAIVFSYRASDPAWLDPISIIKSR*
Ga0070661_1017926092	3300005344	Corn Rhizosphere	MLNRVVCVCSFLMVLLSVASAAMGAWWTFESRISVGDGVFMMAGWIVSAIVFSYRAADPDYL
Ga0070669_1002268282	3300005353	Switchgrass Rhizosphere	MLNRVVCVCSLLMVLLSVASAAMGAWWTFESRISVGDGVFMMAGWIVSAIVFSYRAADPDYLDPISIIKSR*
Ga0070667_1014133252	3300005367	Switchgrass Rhizosphere	VFNRVVSVCSFLMVILSVAACGLGVWWTLIGRISVGDGVFLMAGWCVSAIVFSYRASDPAWLDPISIIKSR*
Ga0070686_1016975401	3300005544	Switchgrass Rhizosphere	MFNRVVSVCSFLMVILSVVACGLGAWWTFIGRVSVGDGVFLMAGWCVSAIVFSYRASDPAWL
Ga0068859_1015454502	3300005617	Switchgrass Rhizosphere	MFNRVVSVCSFLMVILSVAACGLGVWWTLIGRISVGDGVFLMAGWCVSAIVFSYRASDPAWLDPISIIKSR*
Ga0068863_1001047042	3300005841	Switchgrass Rhizosphere	MVILSVAACGLGAWWTLIGRISVGDGVFLMAGWCVSAIVFSYRASDPAWLDPISIIKSR*
Ga0068863_1020625282	3300005841	Switchgrass Rhizosphere	MLNRIVSVCSFLMVLLSLTMFVLGAWWTCDSRITPGDGMFLMGGWLVSALVFSYRAADPDYLDPVSIIKSR*
Ga0066795_100661531	3300005938	Soil	MLNRVVSVCSFFMVILSVVAFGLGAWWTLIGRISEGDGVFMLFGWCVSAIVFSYRAIDPAYLDAVSIIKSR*
Ga0097691_10323252	3300006055	Arctic Peat Soil	MFNRVVSICSFFMVILSVVAFGLGAWWTLLGSISPGDGLFMLAGWCVSAMVFSYRAADPAYLDAVSIIKGR*
Ga0075019_105006371	3300006086	Watersheds	MFNRVVSVCSYLMVILSVVAFTLGGWWTLIGRISPGDGIFMLAGWCVSAVVFSYRAVDPVYLDAISIIKAR*
Ga0075030_1006313172	3300006162	Watersheds	MFDRVVSVCSYFMVILSVVAFAMGAWWTLIGRISSGDGVFMLAGWCVCAVVFLYRALDPAHLDAISIIKAR*
Ga0070715_102885522	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MFNRVVSVCSFLMVILSVVACGLGAWWTFIGRVSVGDGVFLMAGWCVSAIVFSYRASDPAWLDPISIIKSR*
Ga0097621_1001896002	3300006237	Miscanthus Rhizosphere	MFDRVVSVSSFLLVILSVVAFAMGGWWTLVGRISVGDGVFLMAGWCVSAIVFSYRALDPAYLDAISIIKSR*
Ga0068871_1000975722	3300006358	Miscanthus Rhizosphere	MLNRVVCVCSFLMVLLSVASAVMGAWWTFESRISVGDGVFMMAGWIVSAIVFSYRAADPDYLDPISIIKSR*
Ga0075521_101616362	3300006642	Arctic Peat Soil	MLNRVVSVCSFLMVILSVVAFGLGAWWTLISRISAGDGLFMLAGWCVCAMVFSYRAIDPAYLDAVSIIKAR*
Ga0075521_104296011	3300006642	Arctic Peat Soil	MLNRVVSVCSYLMVILSVVAFAMGAWWTFLSRISQGDGVFMLFGWSVCGIVFLYRALDP
Ga0066797_11366342	3300006864	Soil	MLNRVVSVCSFFMVILSVVAFGLGAWWTLIGRISEGDGVFMLFGWCVSAIVFSYRAADPMYLDAVSII
Ga0066797_13183602	3300006864	Soil	MLNRVVSVCSFFMVILSVVAFGLGAWWTFIGRISVGDGVFMLFGWCVSAIVFSYRAADPMYLDAVSII
Ga0066793_102446282	3300009029	Prmafrost Soil	MVILSVVAFGLGAWWTLIGRISEGDGVFMLFGWCLCGIVFWYRAVDPAYLDAVSIIKSR*
Ga0099829_115417842	3300009038	Vadose Zone Soil	MFNRVVSVCSFLMVILSVVAFGLGAWWTLIGSISVGDGVFMLSGWCVSAVVFSYRAI
Ga0105240_115238672	3300009093	Corn Rhizosphere	MVLLSVAAIGMGAWWTFIGAISQGDGLFLMSGWCVSALVFLYRAMDPVYLDPISIIKSR*
Ga0105245_105710922	3300009098	Miscanthus Rhizosphere	MVLLSVASAAMGAWWTFESRISVGDGVFMMAGWIVSAIVFSYRAADPDYLDPVSIIKSR*
Ga0105245_131124271	3300009098	Miscanthus Rhizosphere	MVLLSLTMFVLGAWWTCDGRITPGDGMFLMGGWLVSALVFSYRAADPDYLDPVSIIKSR*
Ga0105247_111900112	3300009101	Switchgrass Rhizosphere	VFNRVVSVCSFLMVILSVAACGLGAWWTLIGRISVGDGVFMMAGWCVSAIVFSYRASDPAWLDPISIIKSR*
Ga0105248_114349652	3300009177	Switchgrass Rhizosphere	MVLLSVASAAMGAWWTFESRISVGDGVFMMAGWIVSAIVFSYRAADPDYLDPISIIKSR*
Ga0134124_101717253	3300010397	Terrestrial Soil	MVILSVAASGLGAWWTFIGRVSVGDGVFLMAGWCVSAIVFSYRASDPAWLDPISIIK
Ga0105246_107953272	3300011119	Miscanthus Rhizosphere	MVLLSLASAAMGAWWTFESRISVGDGVFMMAGWIVSAIVFSYRAADPDYLDPISIIKSR*
Ga0150985_1084237622	3300012212	Avena Fatua Rhizosphere	MVILSVAAFGMGAWWTLISRISVGDGVFMMAGWCVSAIVFSYRAIDPAYLDPISIIKSR*
Ga0150985_1114902501	3300012212	Avena Fatua Rhizosphere	MVILSVAAAAMGAWWTLSSQISVGDGVFMMGGWIVAAIVFSYRAADPDYLDAISIIKSR*
Ga0150985_1136178731	3300012212	Avena Fatua Rhizosphere	MVLLSVAFAAMGAWWTFESRISVGDGVFMMAGWIVSAIVFSYRAADPDYLDPISIIKSR*
Ga0150984_1003974902	3300012469	Avena Fatua Rhizosphere	MMNRIVSACSYLMVILSLAMFALGAWWTCDARITPGDGVFLMGGWLVSALVFSYRAVDPDYLDPVSIIKSR*
Ga0150984_1128092222	3300012469	Avena Fatua Rhizosphere	MLNRIVSVCSFLMVLLSLAMFVFGAWWTCDGRITPGDGVFLMGGWLVSAMVFSYRAADPDYLDPVSIIKSR*
Ga0157378_115849841	3300013297	Miscanthus Rhizosphere	MVILSLAMFAFGAWWTCDGRITPGDGVFLMGGWLVSALVFSYRAADPDYLDPVSIIKSR*
Ga0163162_103487551	3300013306	Switchgrass Rhizosphere	MGAWWTFESRISVGDGVFMMAGWIVSAIVFSYRAADPDYLDPISIIKSR*
Ga0163162_129599332	3300013306	Switchgrass Rhizosphere	MFDRVVSVSSFLLVILSVVAFAMGGWWTLVGRISVGDGVFMMAGWIVSAIVFSYRAADPDYL
Ga0163163_112761032	3300014325	Switchgrass Rhizosphere	MVLLSVASAAMGAWWTFESRISVGDGVFMMAGWIVSAIVFSYRAAAPDYLDPISIIKSR*
Ga0163163_116437002	3300014325	Switchgrass Rhizosphere	VILSVAACGLGVWWTLIGRISVGDGVFLMAGWCVSAIVFSYRASDPAWLDPISIIKSR*
Ga0182010_102943851	3300014490	Fen	MLNRIVSVCSFFMVILSVAVFGMGAWWTLLGRISQGDGVFMLSGGCLCAIVFLYRALDPAYLDAVSIIKSR*
Ga0182019_100047504	3300014498	Fen	MVILSVAAFGLGAWWTMLGRISQGDGLFMLSGWCVSAMVFSYRALDPAYLEPVSIVKSR*
Ga0157379_112367161	3300014968	Switchgrass Rhizosphere	VVAFAMGGWWTLVGRISVGDGVFLMAGWCVSAIVFSYRASDPAWLDPISIIKSR*
Ga0157379_116566492	3300014968	Switchgrass Rhizosphere	MVILSVVACGLGVWWTFIGRVSVGDGVFLMSGWCVSAIVFSYRASDPAWLDPISIIKSR*
Ga0157376_103192742	3300014969	Miscanthus Rhizosphere	LLSVASAAMGAWWTFESRISVGDGVFMMAGWIVSAIVFSYRAADPDYLDPVSIIKSR*
Ga0157376_113093162	3300014969	Miscanthus Rhizosphere	MVILSVVACGLGAWWTFIGRVSVGDGVFLMAGWCVSAIVFSYRASDPAWLDPISIIKSR*
Ga0182037_119590151	3300016404	Soil	MPNRVVSLCSFLVVMLSVVAFALGVWWTFTGTISEGDGFFMMFGWCVCAMVFLYRAMDPAYLDPISIIKSR
Ga0163161_107356382	3300017792	Switchgrass Rhizosphere	MLNRVVCVCSFLMVLLSVASAAMGAWWTFESRISVGDGVFMMAGWIVSAIVFSYRAADPDYLDPVSIIKSR
Ga0184628_102989441	3300018083	Groundwater Sediment	MFNRVVSVCSFLMVILSVVASGLGAWWTLIGRISVGDGVFLMAGWCVSAIVFSYRAIDPV
Ga0066655_103873262	3300018431	Grasslands Soil	DRVVSVCSFLMVVLSLAAAGLGAWLTFASRISVGDGMFMMGGWIVSAIVFSYRASDPVYLDAISIIKSR
Ga0190274_121374302	3300018476	Soil	MLNRVVCVCSFLMVLLSVASAAMGAWWTFSSVISVGDGVFMMAGWIVSAIVFSYRAADPDYLDPISIIKSR
Ga0206356_113619351	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MFNRVVRLGSLFMVLLSVAAIGMGAWWTFIGAISQGDGLFLMSGWCVSALVFLYRAMDPVYLDPISIIKSR
Ga0224533_10209992	3300022526	Soil	MLNRVVSVCSFFMVMLSVAAFGLGAWWTFLGTISQGDGLFMLSGWCVSAMVFSYRALDPAYLDAVSIIKSR
Ga0224559_10205132	3300023091	Soil	LSVVAFGLGAWWTLLGRISPGDGLFMLGGWCVSALVFSYRAADPAHLDAVSIIKGR
Ga0224559_11389801	3300023091	Soil	MFNRVVSICSFFMVILSVVAFGLGAWWTLLGRISPGDGLFMLGGWCVSALVFSYRAADPAHLDAVSI
Ga0208850_10386542	3300025457	Arctic Peat Soil	MLNRVVSVCSFFMVILSVVAFGLGAWWTLIGRISEGDGVFMLFGWCVSAIVFSYRAIDPAYLDAVSIIKSR
Ga0207927_10027082	3300025579	Arctic Peat Soil	MLNRVVSVCSFFMVILSVVAFGLGAWWTIIGRISEGDGVFMLFGWCVSAIVFSYRAIDPAYLDAVSIIKSR
Ga0207927_10108942	3300025579	Arctic Peat Soil	MVILSVVAFGLGAWWTLLGSISPGDGLFMLAGWCVSAMVFSYRAADPAYLDAVSIIKGR
Ga0207926_10818452	3300025619	Arctic Peat Soil	FFMVILSVVAFGLGAWWTLLGSISPGDGLFMLAGWCVSAMVFSYRAADPAYLDAVSIIKG
Ga0209124_102363501	3300025852	Arctic Peat Soil	MLNRVVSVCSFFMVILSVVAFGLGAWWTLIGRISEGDGVFMLFGWCVSAIVFSYRAIDP
Ga0207694_109087962	3300025924	Corn Rhizosphere	MGAWWTFIGAISQGDGLFLMSGWCVSALVFLYRAMDPVYLDPISIIKSR
Ga0207670_101161502	3300025936	Switchgrass Rhizosphere	VFNRVVSVCSFLMVILSVAACGLGAWWTLIGRISVGDGVFLMAGWCVSAIVFSYRASDPAWLDPISIIKSR
Ga0207669_107616841	3300025937	Miscanthus Rhizosphere	SPMLNRVVCVCSFLMVLLSVASAAMGAWWTFESRISVGDGVFMMAGWIVSAIVFSYRAADPDYLDPISIIKSR
Ga0207661_120425811	3300025944	Corn Rhizosphere	AMFALGAWWTCDGRITPGDGVFLMGGWLVSALVFSYRAADPDYLDPISIIKSR
Ga0207661_121011252	3300025944	Corn Rhizosphere	VFNRVVSVCSFLMVILSVAACGLGVWWTLIGRISVGDGVFLMAGWCVSAIVFSYRASDPA
Ga0207677_113286062	3300026023	Miscanthus Rhizosphere	MLNRGVVSLCSFIVMMLSLVFFGMSGWWTLTGRISEGDGVFMLGGWLLAALVFGARAADPVYLDAVSIVKGR
Ga0207648_118354181	3300026089	Miscanthus Rhizosphere	MFNRVVSVCSFLMVILSVAASGLGAWWTFIGRISVGDGVFLMAGWCVSAIVFSYRASDPAWLDPISIIKSR
Ga0207676_102313331	3300026095	Switchgrass Rhizosphere	MLNRVVCVCSFLMVLLSVASAVMGAWWTFESRISVGDGVFMMAGWIVSAIVFSYRAADPDYLDPIS
Ga0207675_1013815741	3300026118	Switchgrass Rhizosphere	MLNRVVCVCSFLMVLLSLASAAMGAWWTFESRISVGDGVFMMAGWIVSAIVFSYRAADPDYLDPVSIIKSR
Ga0209840_11030851	3300026223	Soil	MVILSVVAFGLGAWWTFIGRISVGDGVFMLFGWCVSAIVFSYRAMDPAYLDAVSIIKSR
Ga0209881_10382552	3300026273	Soil	MLNRVVSVCSFFMVILSVVAFGLGAWWTLIGRISEGDGVFMLFGWCVSAIVFSYRAADPMYLDAVSIIKSR
Ga0209881_11353831	3300026273	Soil	MLNRVVSVCSFFMVILSVVAFGLGAWWTLIGRISEGDGVFMLFGWCLCGIVFWYRAVDPAYLDAVSIVKSPGD
Ga0209648_101929293	3300026551	Grasslands Soil	MLNRVVSLCSSLVVILSVVAFGLGAWWTFTSTISEGDGLFMMFGWCVCAMVFLYRAMDPAYLDPISIIKSR
Ga0209067_103987412	3300027898	Watersheds	MFNRVVSVCSYLMVILSVVAFTLGGWWTLIGRISPGDGIFMLAGWCVSAVVFSYRAVDPVYLDAISIIKAR
Ga0311333_112353921	3300030114	Fen	MTNRFVSLCSLFMVILSVTAAGLGAWWTVARKISEGDGVFMMFGWALAALVFAYRAADPAYLDAISIVKSR
Ga0307482_11382931	3300030730	Hardwood Forest Soil	MFDRVVSVCSYFMVILSVVAFAMGAWWTLIGRISSGDGVFMLAGWCVCAVVFLYRAIDPAHLDAISIIKAR
Ga0302323_1025403451	3300031232	Fen	MLNRVVSICSFLMVILSVAAFGLGAWWTLLGRISPGDGLFMLAGWCVSAIVFSYRAADPAYLDAVSIIKGR
Ga0265316_100130716	3300031344	Rhizosphere	MLNRVVSLCSFFMVILSVAAFGLGAWWTMAGRISSGDGVFMLAGWCVSALVFAFRAMDPAYLDAVSIIRSR
Ga0318572_109616251	3300031681	Soil	SLCSSLVVMLSVVAFALGVWWTFTGTISEGDGLFMMFGWCVCAMVFLYRAMDPAYLDPISIIKSR
Ga0307475_113587761	3300031754	Hardwood Forest Soil	MLNRVVSLCSSLVVMLSVVAFALGVWWTFTSTISEGDGLFMMFGWCVCAMVFLYRAMDPAYLDPISIIKSR
Ga0302322_1018880902	3300031902	Fen	MLNRVVCVCSFLMVLLSVAAAAMGAWWTFESRISVGDGVFMMAGWIVSAIVFSYRAADPEYLDPISIIKSR
Ga0308175_1002858102	3300031938	Soil	MLNRVVSVCSFLMVLLSLAMFAFGAWWTCDGRITPGDGVFLMGGWLVSALVFSYRAADPDYLDPVSIIKSR
Ga0308174_118892291	3300031939	Soil	MFNRVVCVGSFFMVLLSVAAIGMGAWWTFIGAISQGDGLFLMSGWCVSALVFLYRAMDPVYLDPISIIKSR
Ga0307479_118123602	3300031962	Hardwood Forest Soil	NRVVSLCSSLVVILSVVAFGLGAWWTFTSTISEGDGLFMMFGWCVCAMVFLYRAMDPAYLDPISIIKSR
Ga0308173_115622102	3300032074	Soil	MLNRVVCVCSFLMVLLSVAFAAMGAWWTFESRISVGDGVFMMAGWIVSAIVFSYRAADPDYLDPISIIKSR
Ga0306920_1027600942	3300032261	Soil	MLNRVVSLCSSLVVMLSVVAFALGVWWTFTGTISEGDGLFMMFGWCVCAMVFLYRAMDPAYLDPISIIKSR
Ga0310914_106437372	3300033289	Soil	MLNRVVSLCSFLVVMLSVVAFALGVWWTFTGTISEGDGLFMMFGWCVCAMVFLYRAMDPAYLDPISIIKSR
Ga0370484_0075086_118_297	3300034125	Untreated Peat Soil	MVILSVVAFGLGAWWTLLGRFSEGDGLFMLAGWCVSAMVFWYRAIDPVYLDAISIIKSR
Ga0373959_0216313_258_437	3300034820	Rhizosphere Soil	MVILSVAACGLGAWWTLIGRISVGDGVFMMAGWCVSAIVFSYRASDPAWLDPISIIKSR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099926

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences