NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F099894

Metagenome / Metatranscriptome Family F099894

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F099894
Family Type Metagenome / Metatranscriptome
Number of Sequences 103
Average Sequence Length 48 residues
Representative Sequence RVTERDGAVQLTASADIDPERPEAAGEAVARLLEGEGAASLLAR
Number of Associated Samples 95
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 100.00 %
% of genes from short scaffolds (< 2000 bps) 92.23 %
Associated GOLD sequencing projects 93
AlphaFold2 3D model prediction Yes
3D model pTM-score0.63

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (66.990 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(28.155 % of family members)
Environment Ontology (ENVO) Unclassified
(37.864 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(44.660 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 26.39%    β-sheet: 11.11%    Coil/Unstructured: 62.50%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.63
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 103 Family Scaffolds
PF00490ALAD 84.47
PF00230MIP 10.68
PF02801Ketoacyl-synt_C 1.94
PF01494FAD_binding_3 0.97
PF03364Polyketide_cyc 0.97

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 103 Family Scaffolds
COG0113Delta-aminolevulinic acid dehydratase, porphobilinogen synthaseCoenzyme transport and metabolism [H] 84.47
COG0580Glycerol uptake facilitator or related aquaporin (Major Intrinsic protein Family)Carbohydrate transport and metabolism [G] 10.68
COG06542-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductasesEnergy production and conversion [C] 1.94
COG0578Glycerol-3-phosphate dehydrogenaseEnergy production and conversion [C] 0.97
COG0644Dehydrogenase (flavoprotein)Energy production and conversion [C] 0.97
COG0665Glycine/D-amino acid oxidase (deaminating)Amino acid transport and metabolism [E] 0.97


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A66.99 %
All OrganismsrootAll Organisms33.01 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001686|C688J18823_10213249All Organisms → cellular organisms → Bacteria1298Open in IMG/M
3300002560|JGI25383J37093_10168335Not Available577Open in IMG/M
3300002886|JGI25612J43240_1052281Not Available607Open in IMG/M
3300002907|JGI25613J43889_10104102Not Available730Open in IMG/M
3300002908|JGI25382J43887_10054272All Organisms → cellular organisms → Bacteria2177Open in IMG/M
3300002912|JGI25386J43895_10172590Not Available542Open in IMG/M
3300004153|Ga0063455_100295522All Organisms → cellular organisms → Bacteria884Open in IMG/M
3300005180|Ga0066685_10598972Not Available758Open in IMG/M
3300005187|Ga0066675_11151334All Organisms → cellular organisms → Bacteria577Open in IMG/M
3300005336|Ga0070680_101560819All Organisms → cellular organisms → Bacteria572Open in IMG/M
3300005451|Ga0066681_10622671Not Available663Open in IMG/M
3300005518|Ga0070699_100743298All Organisms → cellular organisms → Bacteria897Open in IMG/M
3300005556|Ga0066707_10341832All Organisms → cellular organisms → Bacteria979Open in IMG/M
3300005574|Ga0066694_10565180Not Available530Open in IMG/M
3300006163|Ga0070715_11071114All Organisms → cellular organisms → Bacteria506Open in IMG/M
3300006797|Ga0066659_10207780All Organisms → cellular organisms → Bacteria1438Open in IMG/M
3300006797|Ga0066659_10233012Not Available1368Open in IMG/M
3300006844|Ga0075428_100337932All Organisms → cellular organisms → Bacteria1617Open in IMG/M
3300006847|Ga0075431_101955406Not Available542Open in IMG/M
3300006852|Ga0075433_10562682All Organisms → cellular organisms → Bacteria1002Open in IMG/M
3300006854|Ga0075425_100062699All Organisms → cellular organisms → Bacteria4172Open in IMG/M
3300006954|Ga0079219_11322574Not Available636Open in IMG/M
3300007255|Ga0099791_10230329Not Available877Open in IMG/M
3300009090|Ga0099827_10202146All Organisms → cellular organisms → Bacteria1653Open in IMG/M
3300009100|Ga0075418_10691353Not Available1099Open in IMG/M
3300009162|Ga0075423_10249924All Organisms → cellular organisms → Bacteria1857Open in IMG/M
3300009806|Ga0105081_1089496Not Available509Open in IMG/M
3300010301|Ga0134070_10421756All Organisms → cellular organisms → Bacteria529Open in IMG/M
3300010304|Ga0134088_10578949Not Available557Open in IMG/M
3300010323|Ga0134086_10019286All Organisms → cellular organisms → Bacteria2172Open in IMG/M
3300010323|Ga0134086_10024061All Organisms → cellular organisms → Bacteria1969Open in IMG/M
3300010325|Ga0134064_10470978Not Available516Open in IMG/M
3300010326|Ga0134065_10258930Not Available652Open in IMG/M
3300010333|Ga0134080_10640135Not Available521Open in IMG/M
3300010337|Ga0134062_10436126Not Available647Open in IMG/M
3300010362|Ga0126377_13161958All Organisms → cellular organisms → Bacteria532Open in IMG/M
3300010403|Ga0134123_11511429Not Available716Open in IMG/M
3300011270|Ga0137391_11383506Not Available550Open in IMG/M
3300012200|Ga0137382_10450335Not Available911Open in IMG/M
3300012201|Ga0137365_10052993All Organisms → cellular organisms → Bacteria3068Open in IMG/M
3300012203|Ga0137399_11333976Not Available602Open in IMG/M
3300012204|Ga0137374_10490530Not Available956Open in IMG/M
3300012207|Ga0137381_10918661Not Available756Open in IMG/M
3300012208|Ga0137376_10168750All Organisms → cellular organisms → Bacteria1887Open in IMG/M
3300012208|Ga0137376_11060901Not Available693Open in IMG/M
3300012208|Ga0137376_11718123Not Available518Open in IMG/M
3300012349|Ga0137387_10245747All Organisms → cellular organisms → Bacteria1289Open in IMG/M
3300012351|Ga0137386_10583193Not Available805Open in IMG/M
3300012353|Ga0137367_10406151Not Available965Open in IMG/M
3300012356|Ga0137371_10386440Not Available1086Open in IMG/M
3300012356|Ga0137371_11369741Not Available520Open in IMG/M
3300012358|Ga0137368_10044410All Organisms → cellular organisms → Bacteria3842Open in IMG/M
3300012360|Ga0137375_11323736Not Available542Open in IMG/M
3300012362|Ga0137361_10397876Not Available1265Open in IMG/M
3300012407|Ga0134050_1062110Not Available645Open in IMG/M
3300012582|Ga0137358_10207688Not Available1336Open in IMG/M
3300012683|Ga0137398_10302056Not Available1076Open in IMG/M
3300012683|Ga0137398_10924645Not Available607Open in IMG/M
3300012917|Ga0137395_10237515Not Available1277Open in IMG/M
3300012918|Ga0137396_10857129All Organisms → cellular organisms → Bacteria667Open in IMG/M
3300012922|Ga0137394_10560763Not Available968Open in IMG/M
3300012930|Ga0137407_12350955All Organisms → cellular organisms → Bacteria509Open in IMG/M
3300012972|Ga0134077_10104443Not Available1099Open in IMG/M
3300014154|Ga0134075_10406076Not Available602Open in IMG/M
3300014166|Ga0134079_10000599All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae9481Open in IMG/M
3300014308|Ga0075354_1171455Not Available508Open in IMG/M
3300015241|Ga0137418_11102101Not Available565Open in IMG/M
3300015358|Ga0134089_10156016Not Available903Open in IMG/M
3300017657|Ga0134074_1053545All Organisms → cellular organisms → Bacteria1365Open in IMG/M
3300017657|Ga0134074_1196256Not Available715Open in IMG/M
3300017939|Ga0187775_10225517Not Available707Open in IMG/M
3300018053|Ga0184626_10008790All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae3926Open in IMG/M
3300018071|Ga0184618_10208286Not Available819Open in IMG/M
3300018078|Ga0184612_10389957Not Available701Open in IMG/M
3300018089|Ga0187774_11416012Not Available510Open in IMG/M
3300019875|Ga0193701_1038532Not Available979Open in IMG/M
3300019880|Ga0193712_1011973All Organisms → cellular organisms → Bacteria1779Open in IMG/M
3300021081|Ga0210379_10580951Not Available500Open in IMG/M
3300021086|Ga0179596_10218964Not Available932Open in IMG/M
3300025326|Ga0209342_10837135Not Available720Open in IMG/M
3300025885|Ga0207653_10161873Not Available829Open in IMG/M
3300025910|Ga0207684_10492658Not Available1051Open in IMG/M
3300025921|Ga0207652_11501580Not Available578Open in IMG/M
3300025922|Ga0207646_10920934Not Available775Open in IMG/M
3300026295|Ga0209234_1066187All Organisms → cellular organisms → Bacteria1375Open in IMG/M
3300026295|Ga0209234_1146569Not Available841Open in IMG/M
3300026300|Ga0209027_1206323Not Available633Open in IMG/M
3300026301|Ga0209238_1196037Not Available592Open in IMG/M
3300026313|Ga0209761_1299004All Organisms → cellular organisms → Bacteria561Open in IMG/M
3300026332|Ga0209803_1251440Not Available610Open in IMG/M
3300026333|Ga0209158_1151489Not Available848Open in IMG/M
3300026343|Ga0209159_1275164All Organisms → cellular organisms → Bacteria513Open in IMG/M
3300026528|Ga0209378_1142210Not Available981Open in IMG/M
3300026548|Ga0209161_10162209Not Available1281Open in IMG/M
3300027643|Ga0209076_1016165All Organisms → cellular organisms → Bacteria1985Open in IMG/M
3300027909|Ga0209382_12021116All Organisms → cellular organisms → Bacteria552Open in IMG/M
3300028145|Ga0247663_1080165Not Available580Open in IMG/M
3300028711|Ga0307293_10062447Not Available1166Open in IMG/M
3300031820|Ga0307473_10608939Not Available755Open in IMG/M
3300033475|Ga0310811_10237698All Organisms → cellular organisms → Bacteria2173Open in IMG/M
3300033814|Ga0364930_0119160Not Available902Open in IMG/M
3300034114|Ga0364938_081095Not Available607Open in IMG/M
3300034176|Ga0364931_0245906Not Available588Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil28.16%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil14.56%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil11.65%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil9.71%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere6.80%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere4.85%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil3.88%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment2.91%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment2.91%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland1.94%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil1.94%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere1.94%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.97%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.97%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil0.97%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.97%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.97%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.97%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands0.97%
SoilEnvironmental → Terrestrial → Soil → Loam → Unclassified → Soil0.97%
Groundwater SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand0.97%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001686Grasslands soil microbial communities from Hopland, California, USAEnvironmentalOpen in IMG/M
3300002560Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cmEnvironmentalOpen in IMG/M
3300002886Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cmEnvironmentalOpen in IMG/M
3300002907Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cmEnvironmentalOpen in IMG/M
3300002908Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cmEnvironmentalOpen in IMG/M
3300002912Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cmEnvironmentalOpen in IMG/M
3300004153Grasslands soil microbial communities from Hopland, California, USA (version 2)EnvironmentalOpen in IMG/M
3300005180Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134EnvironmentalOpen in IMG/M
3300005187Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124EnvironmentalOpen in IMG/M
3300005336Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaGEnvironmentalOpen in IMG/M
3300005451Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130EnvironmentalOpen in IMG/M
3300005518Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaGEnvironmentalOpen in IMG/M
3300005556Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156EnvironmentalOpen in IMG/M
3300005574Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143EnvironmentalOpen in IMG/M
3300006163Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaGEnvironmentalOpen in IMG/M
3300006797Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108EnvironmentalOpen in IMG/M
3300006844Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2Host-AssociatedOpen in IMG/M
3300006847Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5Host-AssociatedOpen in IMG/M
3300006852Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2Host-AssociatedOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300007255Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1EnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300009806Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_50_60EnvironmentalOpen in IMG/M
3300010301Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015EnvironmentalOpen in IMG/M
3300010304Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015EnvironmentalOpen in IMG/M
3300010323Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010325Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaGEnvironmentalOpen in IMG/M
3300010326Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010333Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010337Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300012200Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012201Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012204Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012207Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012349Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaGEnvironmentalOpen in IMG/M
3300012351Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012353Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012356Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012358Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012360Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012407Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_16_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012582Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaGEnvironmentalOpen in IMG/M
3300012683Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaGEnvironmentalOpen in IMG/M
3300012917Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaGEnvironmentalOpen in IMG/M
3300012918Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaGEnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012972Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300014154Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015EnvironmentalOpen in IMG/M
3300014166Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015EnvironmentalOpen in IMG/M
3300014308Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleC_D1EnvironmentalOpen in IMG/M
3300015241Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015358Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300017657Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015EnvironmentalOpen in IMG/M
3300017939Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MGEnvironmentalOpen in IMG/M
3300018053Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1EnvironmentalOpen in IMG/M
3300018071Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1EnvironmentalOpen in IMG/M
3300018078Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coexEnvironmentalOpen in IMG/M
3300018089Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MGEnvironmentalOpen in IMG/M
3300019875Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s2EnvironmentalOpen in IMG/M
3300019880Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a1EnvironmentalOpen in IMG/M
3300021081Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redoEnvironmentalOpen in IMG/M
3300021086Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300025326Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_2 (SPAdes)EnvironmentalOpen in IMG/M
3300025885Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025921Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026295Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026300Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026301Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026313Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026332Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)EnvironmentalOpen in IMG/M
3300026333Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)EnvironmentalOpen in IMG/M
3300026343Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)EnvironmentalOpen in IMG/M
3300026528Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)EnvironmentalOpen in IMG/M
3300026548Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)EnvironmentalOpen in IMG/M
3300027643Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)EnvironmentalOpen in IMG/M
3300027909Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)Host-AssociatedOpen in IMG/M
3300028145Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK04EnvironmentalOpen in IMG/M
3300028711Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150EnvironmentalOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300033475Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YCEnvironmentalOpen in IMG/M
3300033814Sediment microbial communities from East River floodplain, Colorado, United States - 55_j17EnvironmentalOpen in IMG/M
3300034114Sediment microbial communities from East River floodplain, Colorado, United States - 9_s17EnvironmentalOpen in IMG/M
3300034176Sediment microbial communities from East River floodplain, Colorado, United States - 21_j17EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
C688J18823_1021324913300001686SoilNTGSGMRLYGRVTEHDGAVQLTASAELDPEQPDATGEAVARLLEAEGAASLLAR*
JGI25383J37093_1016833523300002560Grasslands SoilEGTRLYGRVTERDGASQLTASADLDPKRPEAAGEAVARLLEGEGAASLLAR*
JGI25612J43240_105228113300002886Grasslands SoilGGGCQAPVAAVVTGGRLFGRVTERDGAVQLTASADIDRAAPERAGEAVAGLLEREGAATLLAR*
JGI25613J43889_1010410213300002907Grasslands SoilVAAWVDGQRLFGRVTGLDGAVQHTASAPIDSARPEAAGEAVARLLEADGAASLLAR*
JGI25382J43887_1005427213300002908Grasslands SoilDGAVQLSASAELDPGKPEAAGEAVARLLESEGAASLLAR*
JGI25386J43895_1017259023300002912Grasslands SoilGGCQAPVAAWVASRETGNGKRLYGRVTERDGAVQLTASADIDDSAPERAGEVVARLLEGQGAASLLAR*
Ga0063455_10029552223300004153SoilEHDGAVQLTASAELDPEQPDATGEAVARLLEAEGAASLLAR*
Ga0066685_1059897213300005180SoilHGTRLYGRVTERDGAVQLTASAELDAKKPEAAGEAVARLLEGEGAASLLAR*
Ga0066675_1115133413300005187SoilLYGRVTETDGAVQLTASADVDAKRPEAAGEAVARLLEGEGAASLLAR*
Ga0070680_10156081923300005336Corn RhizosphereGMREAGSGMRVYGRVTASDGAVQLTTSADIDPKRPAAAGEAVARLLEAEGAASLLAR*
Ga0066681_1062267113300005451SoilGRVTDRDGAVQLTASAELDFKKPEAAGEAVARLLEGEGAASLLAR*
Ga0070699_10074329813300005518Corn, Switchgrass And Miscanthus RhizosphereRLFGRVTASDGAVQLNASADIDAARPQNAGEAVARLLEAEGAATLLAR*
Ga0066707_1034183213300005556SoilLYGRVTDRNGTVQLTASADIDDSAPERAGEAVARLLEGEGAASLLRQ*
Ga0066694_1056518013300005574SoilRDGAVQLTASAELDFKKPEAAGEAVARLLEGEGAASLLAR*
Ga0070715_1107111423300006163Corn, Switchgrass And Miscanthus RhizosphereAVQLTASAEIDRRAPERAGKAVASLLEAEGAASLLAR*
Ga0066659_1020778013300006797SoilGGGCQAPVAAWVDGNRLYGRVTERDGASQLTASTDLVPKHRGAAGEIVARLLLAEGAGTLLAR*
Ga0066659_1023301233300006797SoilWVGMRDAGSGMRLYGRVTETDGAVQLTASADVDATRPEAAGEAVARLLEGEGAASLLAR*
Ga0075428_10033793213300006844Populus RhizosphereRGKGRLFGRVTASDGGVQLTASADIDAARPQNAGEAVARLLEAAGAATLLAR*
Ga0075431_10195540613300006847Populus RhizosphereDGRLYGRVTERDGAVQLTASADIDRGQPAAAGERVARLLDHQGASILLAR*
Ga0075433_1056268213300006852Populus RhizosphereDERRLFGRVTASDGAVQLTASADIDAARPQKAGEAVARLLEAAGAASLLAR*
Ga0075425_10006269973300006854Populus RhizospherePGAGNRLYGRVTAHDGSVQLTASAEVDPKRPEAAGEAVARLLEGAGAASLLAR*
Ga0079219_1132257413300006954Agricultural SoilVVTGGRLYGRVTERDGAVQLTASADIDRRAPERAGEAVASLLEAEGAASLLAR*
Ga0099791_1023032913300007255Vadose Zone SoilTGNRETGNGKRLFGRVLAVDGAVQLTASVDVDPARPAAAGEDLARLLEAHGALELLAR*
Ga0099827_1020214633300009090Vadose Zone SoilAEIRLYGRVTERDGAVQLTASWGIDPERPEPTGERVARLLEAEGAATLLAR*
Ga0075418_1069135323300009100Populus RhizosphereGASGLGPRLYGRVTAPDGSAQLTASADIDPKRPEAAGEAVARLLEGEGAASLLAR*
Ga0075423_1024992433300009162Populus RhizosphereYGRVTERDGAVQLTASADINDDRPDAAGETVARLLEGEGAASLLAR*
Ga0105081_108949613300009806Groundwater SandRREQGAGSRLYGRVTAQDGSVQLTASADVDAKHPEKAGETVARLLEGEGAASLLAR*
Ga0134070_1042175613300010301Grasslands SoilRVTALDGVVQLTASAPLDPARSEAAGEAVARLLEAEGAASLLAR*
Ga0134088_1057894923300010304Grasslands SoilTGSGMRLYGRVTEADGAVQLTASAELDPKRPEAAGEAVARLLEAEGAASLLAR*
Ga0134086_1001928613300010323Grasslands SoilHTASAEIDAARPEAAGEAVARLLEADGAASLLAR*
Ga0134086_1002406113300010323Grasslands SoilRDTGNGKRLYGRVTDRNGTVQLTASADIDDSAPERAGEAVARLFEGEGAASLLRQ*
Ga0134064_1047097823300010325Grasslands SoilQLTASADVDATRPEAAGEAVARLLEGEGAASLLAR*
Ga0134065_1025893013300010326Grasslands SoilYVGSREPGAGSRLYGRVTDRDGAVQLTASAELDFKKPEAAGEAVARLLQGEGAASLLAR*
Ga0134080_1064013523300010333Grasslands SoilQLTASAELDAKKPEAAGVAVARLLEGEGAASLLAR*
Ga0134062_1043612623300010337Grasslands SoilERDGAVQLTASSELNGNAEAAGEKVARLLEGEGAASLLAR*
Ga0126377_1316195823300010362Tropical Forest SoilRVTERDGAVQLTASADIDPERPEAAGEAVARLLEGEGAASLLAR*
Ga0134123_1151142913300010403Terrestrial SoilTAADGAVQHTASAEIDPARPEAAGEAVARLLEQGGAASLLAR*
Ga0137391_1138350613300011270Vadose Zone SoilLTASADLDPKRPEAAGEAVARLLQAEGAGSLLAR*
Ga0137382_1045033513300012200Vadose Zone SoilDEIRLYGRVTERDGAVQLTASWGIDPERPEAAGEKVARLLEGEGAASLLAR*
Ga0137365_1005299343300012201Vadose Zone SoilGRRVFGRVTASDGSVQHTASAEIDPARPEAAGEAVARLLAADGAASLLAR*
Ga0137399_1133397613300012203Vadose Zone SoilRVTERDGAVQLTASAELDPNRPEATGETVARLLEAEGAASLLAR*
Ga0137374_1049053013300012204Vadose Zone SoilRDGAVQLTASADIDQSAPERAGETVARLLESEGAASLLAR*
Ga0137381_1091866113300012207Vadose Zone SoilDGSVQLTASADLDPKRPEAAGEAVARLLEGEGAASLLAR*
Ga0137376_1016875013300012208Vadose Zone SoilWVEARETGNGKRLYGRVTERDGSVQLTASADLDPKRPEAAGEAVARLLESEGAASLLAR*
Ga0137376_1106090123300012208Vadose Zone SoilLYGRVTDRDGAAQLTASADIDRAAPQQAGETVARLLLAEGAGTLLAR*
Ga0137376_1171812323300012208Vadose Zone SoilCQAPVAAWVDGVVLYGRVTERDGAVQLTASSKLNGNAEAAGEKVARVLEGEGAASLLAR*
Ga0137387_1024574713300012349Vadose Zone SoilRLYGRVTDRDGAVQLTASADIDDSAPARAGETVARLLEAEGAATLLAR*
Ga0137386_1058319323300012351Vadose Zone SoilYGRVTERDGAVQLTASADIDRTAPERAGEAVASLLEREGAATLLAR*
Ga0137367_1040615113300012353Vadose Zone SoilVQLTASADIDRTAPERAGEAVASLLEREGAATLLAR*
Ga0137371_1038644013300012356Vadose Zone SoilGSVQLTASAEIDPNRPERAGDAVARLLQGEGAATLLAR*
Ga0137371_1136974123300012356Vadose Zone SoilVTETDGAAQLTASADLEGDRPEAAGDAVARLLEGEGAASLLAR*
Ga0137368_1004441063300012358Vadose Zone SoilYGRVTASDGSVQLTASADIDPERPEQAGAAVARLLEAAGAASLLAR*
Ga0137375_1132373613300012360Vadose Zone SoilGGRGKGRLFGRVTAPDGSVQLTASAEIDPNRPERAGDAVARLLQGEGAGTLLAR*
Ga0137361_1039787613300012362Vadose Zone SoilLTASADLDPKHPDAAGEAVARLLQAEGAGSLLAR*
Ga0134050_106211013300012407Grasslands SoilQAPVAAWVDGNRLYGRVTERDGASQLTASADLVPKRPGAAGEVVARLLESEGAASLLAR*
Ga0137358_1020768833300012582Vadose Zone SoilAWVDTRETGNGKRLYGRVTERDGSVQLTASADLDPKRPEAAGEAVARLLESEGAASLLAR
Ga0137398_1030205623300012683Vadose Zone SoilVTGGRLYGRVTDRDGAVQLTASADIDRSAPERAGEAVASLLEREGAASLLAR*
Ga0137398_1092464523300012683Vadose Zone SoilAPVAAWVEKRGAKQWMRLYGRVTETNGAVQLTASADIDPRLPHAAGEVVARLLWGEGAATLLAR*
Ga0137395_1023751513300012917Vadose Zone SoilERDGAVQLTASADIDRSAPERAGEAVASLLEREGAATLLAR*
Ga0137396_1085712913300012918Vadose Zone SoilLTASADIDRDAPERAGEAVARLLESEGAASLLAR*
Ga0137394_1056076313300012922Vadose Zone SoilLFGRVTASDGTGQLTASADIDGARPQKAGETVARLLEAAGAVSLLAR*
Ga0137407_1235095523300012930Vadose Zone SoilGKRLYGRVTERDGTVQLTASADLDPKRPEAAGEAVARLLESEGAASLLAR*
Ga0134077_1010444323300012972Grasslands SoilQLTASADLDPKRPEAAGEAVARLLEGEGAASLLAR*
Ga0134075_1040607613300014154Grasslands SoilDARSGMRLYGRVTETDGAVQLTASAEIDAKRPEAAGDAVARLLEGEGAASLLAR*
Ga0134079_10000599133300014166Grasslands SoilGRVTASDGAVQLTASAAIDAGWPRKAGEAVARLLEAAGAASLLAR*
Ga0075354_117145523300014308Natural And Restored WetlandsGSVQLTASAAFDESTPERTGDAVARLLEREGAATLLAR*
Ga0137418_1110210113300015241Vadose Zone SoilVDGMRLYGRVTERDGASQLTASADIDRAAPERAGEAVARLLEAEGAGTLLAR*
Ga0134089_1015601623300015358Grasslands SoilETGNGKRLYGRVTERDGTVQLTASADLDPKRPEAAGEAVARLLEGEGAASLLAR*
Ga0134074_105354513300017657Grasslands SoilTETDGAAQLTASADLEGDRPEAVGDAVARLLEGEGAASLLAR
Ga0134074_119625613300017657Grasslands SoilTDGAVQLTASAEIDAKRPEAAGDAVARLLEGEGAASLLAR
Ga0187775_1022551723300017939Tropical PeatlandGGCQAPVAAWVEGETLFGRVTERDGAVQLTASATLRGNPEAAGEAVARLLEAEGAASLLA
Ga0184626_1000879063300018053Groundwater SedimentQLTASADIDPTRPETAGESVARLLEGEGAASLLAR
Ga0184618_1020828623300018071Groundwater SedimentYVETGDGGRGRGRLYGRVTAADGSVQHTASAEIDPARPEAAGEAVARLLEADGAATLLAR
Ga0184612_1038995723300018078Groundwater SedimentRLFGRVTASDGAVQHTASAEIDPARPEAAGEAVARLLEADGAASLLAR
Ga0187774_1141601223300018089Tropical PeatlandVEGETLFGRVTERDGAVQLTASATLRGNPEAAGEAVARLLEAEGAASLLAR
Ga0193701_103853223300019875SoilAVQLTASADIDAARPQKAGEAVARLLEAEGAASLLAR
Ga0193712_101197313300019880SoilAERRLFGRVTADDGSVQLTASAEIDPARPERAGEAVARLLEAEGAASLLAR
Ga0210379_1058095123300021081Groundwater SedimentRVTAPDGAVQHTASAAIDPVRPEAAGEAVARLLEADGAASLLAR
Ga0179596_1021896423300021086Vadose Zone SoilDGAVQLTASANLDDAKPEQAGEAVARLLEGEGAASLLAR
Ga0209342_1083713523300025326SoilASRLYGRVTATDGSVQLTASAPLDASRPAAAAETVAHLLESQGAPKLLAR
Ga0207653_1016187313300025885Corn, Switchgrass And Miscanthus RhizosphereTRETGNGKRLYGRVTEHDGGVQLTASSDLDESAPEKAGEAVARLLEHQGAASLLAR
Ga0207684_1049265823300025910Corn, Switchgrass And Miscanthus RhizosphereRDGAVQLTASADIDRKVPERAGEAVASLLEREGAASLLAR
Ga0207652_1150158023300025921Corn RhizosphereWVDGARLYGRVTERDGAAQLTASANIEKSAPEKAGAAVARLLEHQGAASLLAR
Ga0207646_1092093423300025922Corn, Switchgrass And Miscanthus RhizosphereDGAVQLTASADIDRKVPERAGEAVASLLEREGAASLLAR
Ga0209234_106618713300026295Grasslands SoilLYGRVTAADGAIQLTASADIDPERPERAGETVARLLEAEGAASLLAR
Ga0209234_114656913300026295Grasslands SoilYGRVTERDGAVQLTASADIDDSAPERAGEVVARLLEGQGAASLLAR
Ga0209027_120632313300026300Grasslands SoilRETGNGKRLYGRVTDRDGAVQLTASAPIDPGIPERAGEAVARLLQAEGAGTLLAR
Ga0209238_119603713300026301Grasslands SoilGRVTASDGAIQLTASADIDPEQPERAGETVARLLEAEGAASLLAR
Ga0209761_129900423300026313Grasslands SoilYGRVTETNGAVQLTASADLDPKRAEAAGEAVARLLQSEGAGTLLAR
Ga0209803_125144023300026332SoilAPVAAWVEGTRLYGRVTERDGASQLTASADLDPKRPEAAGEAVARLLEGEGAASLLAR
Ga0209158_115148913300026333SoilETENGKRLYGRVTERDGSVQLTASADLDPKHPEAAGEAVARLLESEGAASLLAR
Ga0209159_127516423300026343SoilGSRLYGRVTALDGVVQLTASAPLDPARSEAAGEAVARLLEAEGAASLLAR
Ga0209378_114221013300026528SoilLYGRVTDRNGTVQLTASADIDDSAPERAGEAVARLLEGEGAASLLRQ
Ga0209161_1016220933300026548SoilQLTASADLDPKRPEAAGEAVARLLQSEGAGSLLAR
Ga0209076_101616513300027643Vadose Zone SoilTERDGSVQLTASSDLDPKRPEAAGEAVASLLESEGAASLLAR
Ga0209382_1202111623300027909Populus RhizosphereGRVTAPDGSVQLTASADIDPKRPEAAGEAVARLLEGEGAASLLAR
Ga0247663_108016523300028145SoilRVTEQDGGVQLTASSDIDESAPEKAGEAVARLLEHQGAASLLAR
Ga0307293_1006244723300028711SoilAPVAAWVDGHRLFGRVTAADGSVQLTASAEIEPARPQAAGEAVARLLEAEGAASLLAR
Ga0307473_1060893923300031820Hardwood Forest SoilVGSQEPGAGSRLYGRVTAHDGSVQLTASADIDPKRPEASGEIVARLLEGEGAASLLAR
Ga0310811_1023769843300033475SoilQAPVAAWVGKGEAGSGMRLYGRVTETNGCVQLTASADLDPSKPEAAGEAVARLLEGEGAATLLAR
Ga0364930_0119160_745_9003300033814SedimentDGQRLFGRVTAPDGAVQLTASAQIDPQRPETAGETVARLLEAQGAASLLAR
Ga0364938_081095_453_6053300034114SedimentGARLSGRVTERDGAVQLTASADIDPAHPEQAGETVARLLEGEGAASLLAR
Ga0364931_0245906_445_5883300034176SedimentLFGRVTASDGAVQHTASAEIDPARPEAAGEAVARLLEADGAASLLAR


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