NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F099873

Metagenome Family F099873

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F099873
Family Type Metagenome
Number of Sequences 103
Average Sequence Length 48 residues
Representative Sequence MEDVDLARELIILKAKDLGMDDESLDALDEVVCKMLGIEDADPLIFPT
Number of Associated Samples 88
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 84.16 %
% of genes near scaffold ends (potentially truncated) 16.50 %
% of genes from short scaffolds (< 2000 bps) 71.84 %
Associated GOLD sequencing projects 78
AlphaFold2 3D model prediction Yes
3D model pTM-score0.61

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (75.728 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(23.301 % of family members)
Environment Ontology (ENVO) Unclassified
(67.961 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(89.320 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.
1DelMOSum2010_100479432
2DelMOSpr2010_100131544
3DelMOSpr2010_100420892
4BBAY94_100129092
5BBAY94_126109502
6JGI24006J15134_100610631
7JGI24003J15210_100383263
8JGI24004J15324_100229182
9Water_10021713
10JGI26119J46589_10468791
11Ga0065861_11003971
12Ga0066224_10506473
13Ga0066222_12709471
14Ga0068514_10142582
15Ga0068514_10255811
16Ga0074648_10258322
17Ga0078894_114040561
18Ga0078893_122533401
19Ga0075478_102483802
20Ga0075441_100966452
21Ga0066836_105150182
22Ga0075446_101960741
23Ga0075445_100472863
24Ga0075448_100501332
25Ga0098054_10008026
26Ga0070749_101423582
27Ga0070749_102829483
28Ga0070754_102126222
29Ga0075468_102349411
30Ga0070752_10582842
31Ga0099849_10374572
32Ga0105746_11689182
33Ga0114916_11047281
34Ga0118687_100255793
35Ga0114995_100609012
36Ga0114995_101702052
37Ga0114994_104178412
38Ga0114994_108297932
39Ga0114998_104906262
40Ga0114915_10369072
41Ga0114915_10457322
42Ga0114915_10852042
43Ga0115562_11687321
44Ga0115564_100147542
45Ga0115564_105275342
46Ga0118733_1051719362
47Ga0180120_101745253
48Ga0181369_10944562
49Ga0181390_10028007
50Ga0181344_10174643
51Ga0181561_104326521
52Ga0181560_101479092
53Ga0181563_104140632
54Ga0181592_104020152
55Ga0206131_101368842
56Ga0211504_10608694
57Ga0211505_11423181
58Ga0206677_100932272
59Ga0213863_100639362
60Ga0213865_101746832
61Ga0213869_100086696
62Ga0213868_100285704
63Ga0213866_100306142
64Ga0222717_100221522
65Ga0222717_102369802
66Ga0222718_100104204
67Ga0222716_101801942
68Ga0222719_100914962
69Ga0224906_100188110
70Ga0196903_10026643
71Ga0196899_10196042
72Ga0224504_102615511
73Ga0228664_10650492
74Ga0207905_10070153
75Ga0207890_10044302
76Ga0208791_10226272
77Ga0208298_10080073
78Ga0208792_10517581
79Ga0208434_10866921
80Ga0209634_10279124
81Ga0209634_10537282
82Ga0208032_10295832
83Ga0208814_10099626
84Ga0208814_10526565
85Ga0208814_10675372
86Ga0208149_11256671
87Ga0209138_11677111
88Ga0208134_10441442
89Ga0209199_12539862
90Ga0209223_100786334
91Ga0209223_102212762
92Ga0209632_102286073
93Ga0209384_10249383
94Ga0209192_100789572
95Ga0209830_103222521
96Ga0209090_105287542
97Ga0209712_101711232
98Ga0256382_11824412
99Ga0183757_10194083
100Ga0307488_104793262
101Ga0307488_108264001
102Ga0302126_102460682
103Ga0334987_0037699_3025_3183
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 39.47%    β-sheet: 0.00%    Coil/Unstructured: 60.53%
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Variant

51015202530354045MEDVDLARELIILKAKDLGMDDESLDALDEVVCKMLGIEDADPLIFPTSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.61
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
24.3%75.7%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Freshwater Lake
Freshwater
Marine
Deep Ocean
Marine Sediment
Aqueous
Seawater
Marine Surface Water
Sackhole Brine
Freshwater To Marine Saline Gradient
Marine
Estuary Water
Marine
Seawater
Estuary Water
Salt Marsh
Marine
Estuarine Water
Pelagic Marine
Seawater
Pelagic Marine
Marine
Marine Water
Seawater
Sediment
Saline Water And Sediment
Sediment
Macroalgal Surface
23.3%7.8%10.7%5.8%2.9%3.9%7.8%4.9%3.9%2.9%2.9%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2010_1004794323300000101MarineMIDVELAREMIYLKAKDLGLDEEQLESLDTLVCSQLKILNPDPFIYPT*
DelMOSpr2010_1001315443300000116MarineMIDVDLARELIILKAKDLGLDDEKLDSLDVLVCSRLGIEDPDPLIFPS*
DelMOSpr2010_1004208923300000116MarineMETARELIILKAKDLGLDDEKLDQLDDTVCGLLGLEDADPLIFPT*
BBAY94_1001290923300000949Macroalgal SurfaceMIDADLARELIILKAKDLGMDENKLDALDELVCKMLEIDDADPLIFPS*
BBAY94_1261095023300000949Macroalgal SurfaceMLDADLARELIILKAKDLGLDDSELDQLDEVVCMALDIEDPDPLIFPV*
JGI24006J15134_1006106313300001450MarineMVDADLARELIVLKAKDLGMNDEKLGELDKVICKMLGIEDADPFIFPS*
JGI24003J15210_1003832633300001460MarineMVDADLARELIVLKAKDLGMNDEKLDELDKVICKMLGIEDADPFIFPS*
JGI24004J15324_1002291823300001472MarineMVDMETARELIILKAKDLGLDDEKLDQLDDTVCELLGLENADPLIFPT*
Water_100217133300002930Estuary WaterMIDVDLARELIVLKAKDLGLEGENLDQMDELVCELLGIEDADPLIFPS*
JGI26119J46589_104687913300003264MarineLIILKAKDLGLEDEDLNDLDEVICKMLRIKDAEPFIFPS*
Ga0065861_110039713300004448MarineMDDVNLSRELIILKAKDLGMDDESLDALDEVVCKMLGIKDADPFIFPT*
Ga0066224_105064733300004457MarineMDDVNLSREFIILKAKDLGMNDESLDALDEVVCKMLGIKDADPFIFPT*
Ga0066222_127094713300004460MarineMTDIDLARELIILKAKDLGLGDDALEQLDAVVCKMLNIEDAEPLIFPT*
Ga0068514_101425823300004941Marine WaterWEDSMIDVDLARELIVLKAKDLGLEDEKLDQMDELVCELLGIEAADPLIFPS*
Ga0068514_102558113300004941Marine WaterMLEAELAREIIALKAKDLGMDDADLEQLDEVICKVLGIDDPD
Ga0074648_102583223300005512Saline Water And SedimentMLDADLARELIILKAKDLGLDDSELDQLDEAVCMVLGIEDPDPLIFPV*
Ga0078894_1140405613300005662Freshwater LakeMGENDIDVNLARELIVLKAKDLGLDDAALERLDEVVCAVLDIEDADPLIFPT*
Ga0078893_1225334013300005837Marine Surface WaterLTFTPTWEDSMIDVDLARELIVLKAKDLGLEDEKLDQMDELVCELLGVEDADPLIFPS*
Ga0075478_1024838023300006026AqueousMIDVDLARELIVLKAKDLGLEDENLDQMDELVCELLGIEDADPLIFPS*
Ga0075441_1009664523300006164MarineMDDVDLSRELIILKAKDLGMDDKSLDALDEVVCKMLGIEDADPFIFPT*
Ga0066836_1051501823300006166MarineMIDVDFARELIILKAKDLKMDDESLDALDKVFCKILFY*
Ga0075446_1019607413300006190MarineMEDVDLSRELIILKAKDLGMDDESLDALDGVVCKMLGIEDADPFIFPT*
Ga0075445_1004728633300006193MarineMENDNMIDVDLARELIILKAKDLGMDDGGLDALDEVVCKMLGIEDADPFIFPT*
Ga0075448_1005013323300006352MarineKMEDVDLSRELIILKAKDLGMDDESLDALDGVVCKMLGIEDADPFIFPT*
Ga0098054_100080263300006789MarineMDDVDLARELIILKAKDLGMDDESLNELDEVVCNILGIKDADPFIWPA*
Ga0070749_1014235823300006802AqueousMEDVELAREIILLKAKDLGLDDDALDQLDVVICKMLDIEFPDPIIFPV*
Ga0070749_1028294833300006802AqueousMIDVDLARELIVLKAKDLGLDEEQLESLDAFVCKMLEIEDADP
Ga0070754_1021262223300006810AqueousMIDVDLARELIVLKAKDLGLDEEQLESLDAVVCKMLEIEDADPLIFPS*
Ga0075468_1023494113300007229AqueousMLDADLARELIILKAKDLGLDDSELDQLDEAVCMVLGIEDPDPLIFP
Ga0070752_105828423300007345AqueousMIDVDLARELIVLKAKDLGLDEEQLDSLDAVVCKMLEIEDADPLIFPS*
Ga0099849_103745723300007539AqueousMIDVDLARELIILKAKDLGLGEKALQELDSTVCKMLNIEDPEPFIFPD*
Ga0105746_116891823300007973Estuary WaterMIDVDLARELIVLKSKDLGLEDEKLDQMDELVCELLGIEDADPLIFPS*
Ga0114916_110472813300008221Deep OceanMFMEDVNLSRELIILKAKDLGMDDESLDALDGVVCKMLGIENADPLIFPT*
Ga0118687_1002557933300009124SedimentMIDVDLARELIVLKAKDLGLEDEKLDQMDELVCELLGVEDADPLIFPS*
Ga0114995_1006090123300009172MarineMIDADLARELIILKAKDLEMDDENLDALDQVVCKMLEIVDADPLIFPS*
Ga0114995_1017020523300009172MarineMDDVNLSREFIILKAKDLGMDDESLDALDEVVCKMLGIKDADPLIFPT*
Ga0114994_1041784123300009420MarineMFMEDVDLARELIILKAKDLGMDDESLDALDEVVCKMLGIEDADPLIFPT*
Ga0114994_1082979323300009420MarineMDDVDLARELIILKAKDLKMDDESLESLDEVVCKMLGIEDADPFIFPT*
Ga0114998_1049062623300009422MarineMIDVDLARELIILKAKDLKMDDKSLEALDEVVCKMLKIENADPLIFPS*
Ga0114915_103690723300009428Deep OceanMDDVDLARELIILKAKDLKMDDKSLEALDEVVCKMLKIENADPLIFPS*
Ga0114915_104573223300009428Deep OceanMGRSKLIDMETARELIILKAKDLGLDDEKLDQLDDTVCGLLGLEDADPLIFPT*
Ga0114915_108520423300009428Deep OceanMEDVNLSRELIILKAKDLGMDDEGLDALDEVVCKMLGIEDADPFIFPT*
Ga0115562_116873213300009434Pelagic MarineMIDVDLAREMIYLKAKDLGLDEEQLESLDTLVCSQLKIEDPDPFIYPT*
Ga0115564_1001475423300009505Pelagic MarineMIDVDLAREMIYLKAKDLGLDDEKLESLDILVCSQLKIKDPDPFIYPT*
Ga0115564_1052753423300009505Pelagic MarineKMEKMIDVELARELIYLKAKDLGLDEEQLESLDRVVCSRLKIEDPDPFIYPT*
Ga0118733_10517193623300010430Marine SedimentMLDADLAREIIVLKAKDLGLDDSELEQLDEVVCMMLDIEDPEPLIFPV*
Ga0180120_1017452533300017697Freshwater To Marine Saline GradientMDKMIDVELAREMIYLKAKDLGLDEEQLESLDTLVCSQLKIEDPDPFIYPT
Ga0181369_109445623300017708MarineMIDVDLTRELIILKAKDLGMEDDSLDALDELVCKMLEIDDADPLIFPS
Ga0181390_100280073300017719SeawaterMIDVDLARELIVLKAKDLGLKDEKLDQMDELVCELLNIEDADPLIFPS
Ga0181344_101746433300017754Freshwater LakeMGENDIDVNLARELIVLKAKDLGLDDAALERLDEVVCAVLDIEDADPLIFPT
Ga0181561_1043265213300018410Salt MarshTFTPTWEDSMIDVDLAREPIVLKAKDLGLEDEKLDQMDELVCELLGIEVADPLIFPS
Ga0181560_1014790923300018413Salt MarshMEDADLAREIILLKAKDLGLDDDALDQLDVVICKMLDIEFPDPIIFPV
Ga0181563_1041406323300018420Salt MarshMEDADLAREIILLKAKDLGLDDDALDQLDVVICKMLDIEFPDPIIFPA
Ga0181592_1040201523300018421Salt MarshVDLARELIILKAKDLGLSDDDLQSLDDVVCKMLNIENPEPFIFPT
Ga0206131_1013688423300020185SeawaterRGRSKLIDMETARELIILKAKDLGLDDEKLDQLDDTVCGLLGLEDADPLIFPT
Ga0211504_106086943300020347MarineMDDVDLARELIILKAKDLGMDDESLNELDEVVCNILGIKDADP
Ga0211505_114231813300020352MarineMDDVDLARELIILKAKDLGMDDESLNELDEVVCNILGIKDADPFIWPS
Ga0206677_1009322723300021085SeawaterMTDADLSRELIALKAKDLGLDDSEIDELDQLVCELLGIEDPDPIIFPS
Ga0213863_1006393623300021371SeawaterMIDVDLARELIVLKAKDLGLEDENLDQMDELVCELLGIEDADPLIFPS
Ga0213865_1017468323300021373SeawaterMIDVDLARELIILKAKDLGLGEKALQELDSTVCKMLNIEDPEPFIFPD
Ga0213869_1000866963300021375SeawaterMIDVDLARELIVLKAKDLGLDEEQLESLDAVVCKMLEIEDVDPLIFPS
Ga0213868_1002857043300021389SeawaterMIDVDLARELIVLKAKDLGLEDEKLDQMDELVCELLGIEDADPLIFPS
Ga0213866_1003061423300021425SeawaterMIDVDLARELIILKAKDLGLSDDDLQSLDDVVCKMLNIENPDPLIFPT
Ga0222717_1002215223300021957Estuarine WaterMIDVDLTRELIILKAKDLGMEDDNLDALDELVCKMLEIDDADPLIFPS
Ga0222717_1023698023300021957Estuarine WaterMIDADLARELIILKAKDLGMDENKLDALDELVCKMLEIDDADPLIFPS
Ga0222718_1001042043300021958Estuarine WaterMIDVDLARELIVLKAKDLGLEDEKLDQMDELVCELLGVEDADPLIFPS
Ga0222716_1018019423300021959Estuarine WaterVLTFTPTWEDSMIDVDLARELIVLKAKDLGLEDEKLDQMDELVCELLGVEDADPLIFPS
Ga0222719_1009149623300021964Estuarine WaterMEDAELAREIILLKAKDLGLDDDALDQLDVVICKMLDIEFPDPIIFPV
Ga0224906_1001881103300022074SeawaterMIDVDLARELIVLKAKDLGLEDEKLDQMDELVCELLGIENADPLIFPS
Ga0196903_100266433300022169AqueousMIDVDLARELIVLKAKDLGLDEEQLESLDAVVCKMLEIEDADPLIFPS
Ga0196899_101960423300022187AqueousMIDVDLARELIILKAKDLKMDDKSLEALDEVVCKMLKIENADPLIFPS
Ga0224504_1026155113300022308SedimentMIDVDLARELIVLKAKDLGLEDEKLDQMDELVCELLGI
Ga0228664_106504923300024294SeawaterMIDVDLTRELIILKAKDLGMEDDSLDALDELVCKMLEIDNADPLIFPS
Ga0207905_100701533300025048MarineMVDADLARELIVLKAKDLGMNDEKLGELDKVICKMLGIEDADPFIFPS
Ga0207890_100443023300025079MarineMVDADLARELIVLKAKDLGMNDEKLDELDKVICKMLGIEDADPFIFPS
Ga0208791_102262723300025083MarineMIDVDLARELIILKAKDLGLDDEKLDSLDVLVCSRLGIEDPDPLIFPS
Ga0208298_100800733300025084MarineMIDVDLARELIVLKAKDLGLEDEKLDQMDELVCELLNIEDADPLIFPS
Ga0208792_105175813300025085MarineIDVDLARELIVLKAKDLGLEDEKLDQMDELVCELLNIEDADPLIFPS
Ga0208434_108669213300025098MarineMDDVDLARELIILKAKDLGMDDESLNELDEVVCNILGIKDADPFIWPA
Ga0209634_102791243300025138MarineMGRSKLIDMETARELIILKAKDLGLDDEKLDQLDDTVCGLLGLEDADPLIFPT
Ga0209634_105372823300025138MarineMVDMETARELIILKAKDLGLDDEKLDQLDDTVCELLGLENADPLIFPT
Ga0208032_102958323300025266Deep OceanMEDVDLSRELIILKAKDLGMDDESLDALDGVVCKMLGIEDADPFIFPT
Ga0208814_100996263300025276Deep OceanMEDVNLSRELIILKAKDLGMDDESLDALDGVVCKMLGIEDADPLIFPT
Ga0208814_105265653300025276Deep OceanMDDVDLARELIILKAKDLKMDDKSLEALDEVVCKMLKIENADPLIFPS
Ga0208814_106753723300025276Deep OceanMEDVNLSRELIILKAKDLGMDDEGLDALDEVVCKMLGIEDADPFIFPT
Ga0208149_112566713300025610AqueousMIDVDLARELIVLKAKDLGLDEEQLESLDAVVCKMLEIEDADPL
Ga0209138_116771113300025617MarineVIMIDVDLARELIVLKAKDLGLDEEQLESLDAVVCKMLEIEDADPLIFPS
Ga0208134_104414423300025652AqueousMIDVDLARELIVLKAKDLGLEDEKLDQMDELVCELLGIEDADPFIFPS
Ga0209199_125398623300025809Pelagic MarineMIDVDLAREMIYLKAKDLGLDDEKLESLDILVCSQLKIKDPDPFIYPT
Ga0209223_1007863343300025876Pelagic MarineMGPKEIEMIDVELAREMIYLKAKDLGLDEEQLESLDRLVCSQLKIEDPDPFIYPT
Ga0209223_1022127623300025876Pelagic MarineMEKMIDVELARELIYLKAKDLGLDDEQLESLDTLVCSQLKIEDPDPFIYPI
Ga0209632_1022860733300025886Pelagic MarineMEKMIDVELARELIYLKAKDLGLDDEQLESLDTLVCSQLKIEDPDPFIYPT
Ga0209384_102493833300027522MarineMDDVDLSRELIILKAKDLGMDDKSLDALDEVVCKMLGIEDADPFIFPT
Ga0209192_1007895723300027752MarineLYLGDDNMIDADLARELIILKAKDLEMDDENLDALDQVVCKMLEIVDADPLIFPS
Ga0209830_1032225213300027791MarineMIDVDLARELIILKAKDLKMDDKSLEALDEVVCKMLKIENADPLIF
Ga0209090_1052875423300027813MarineMEDVDLARELIILKAKDLGMDDESLDALDEVVCKMLGIEDADPLIFPT
Ga0209712_1017112323300027849MarineMIDADLARELIILKAKDLEMDDENLDALDQVVCKMLEIVDADPLIFPS
Ga0256382_118244123300028022SeawaterMVDADLARELIVLKAKDLGMNDKKLDELDKVICKMLGIENADPFIFPS
Ga0183757_101940833300029787MarineMVDADLARELIVLKAKDLGMNDKKLDELDKVICKMLGIEDADPFIFPS
Ga0307488_1047932623300031519Sackhole BrineMIDVDLARELIILKAKALGLDDEKLDSLDVLVCSRLGIEDPDPLIFPS
Ga0307488_1082640013300031519Sackhole BrineMDDVNLSRELIILKAKDLGMDDESLDALDEVVCKMLGIKDADPFIFPT
Ga0302126_1024606823300031622MarineMDDVNLSREFIILKAKDLGMDDESLDALDEVVCKMLGIKDADPLIFPT
Ga0334987_0037699_3025_31833300034061FreshwaterMEENDIDVNLARELIVLKAKDLGLDDIAIERLDAVICAALNIDDADPLIFPT


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